Query 022641
Match_columns 294
No_of_seqs 204 out of 2513
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 08:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u61_B DNA polymerase accessor 100.0 5.4E-31 1.8E-35 223.9 22.2 216 46-279 11-236 (324)
2 2chg_A Replication factor C sm 100.0 4.8E-30 1.6E-34 206.3 25.2 222 48-279 4-225 (226)
3 1sxj_D Activator 1 41 kDa subu 100.0 4.4E-31 1.5E-35 227.0 19.2 236 46-281 22-264 (353)
4 1sxj_C Activator 1 40 kDa subu 100.0 1.2E-30 4E-35 223.2 21.2 227 47-282 11-241 (340)
5 1iqp_A RFCS; clamp loader, ext 100.0 1.1E-30 3.8E-35 222.1 17.9 227 46-282 10-236 (327)
6 2chq_A Replication factor C sm 100.0 1.6E-30 5.3E-35 220.5 17.2 225 48-282 4-228 (319)
7 1sxj_B Activator 1 37 kDa subu 100.0 1.6E-29 5.4E-34 214.7 23.0 226 47-281 7-232 (323)
8 1jr3_A DNA polymerase III subu 100.0 1.5E-28 5.2E-33 212.7 25.9 224 48-281 3-245 (373)
9 1njg_A DNA polymerase III subu 100.0 1.7E-28 5.8E-33 199.9 24.2 222 47-278 9-249 (250)
10 1sxj_E Activator 1 40 kDa subu 100.0 2.8E-29 9.7E-34 215.9 20.4 221 50-270 3-250 (354)
11 3pvs_A Replication-associated 100.0 1.2E-28 4E-33 216.4 20.7 214 49-281 14-245 (447)
12 1sxj_A Activator 1 95 kDa subu 100.0 1.3E-27 4.6E-32 214.5 21.2 225 46-279 24-273 (516)
13 3pfi_A Holliday junction ATP-d 100.0 1.7E-26 5.9E-31 197.3 21.8 211 47-279 15-253 (338)
14 3uk6_A RUVB-like 2; hexameric 99.9 2E-25 6.8E-30 192.9 21.0 225 46-280 28-330 (368)
15 1hqc_A RUVB; extended AAA-ATPa 99.9 3.8E-25 1.3E-29 187.8 21.1 208 52-280 3-238 (324)
16 1in4_A RUVB, holliday junction 99.9 1.3E-23 4.5E-28 178.7 23.9 217 43-281 7-251 (334)
17 3bos_A Putative DNA replicatio 99.9 1.5E-24 5E-29 176.3 16.0 210 48-278 14-241 (242)
18 1a5t_A Delta prime, HOLB; zinc 99.9 7.1E-24 2.4E-28 180.4 19.9 183 64-261 5-209 (334)
19 4b4t_J 26S protease regulatory 99.9 8.7E-24 3E-28 180.3 18.1 205 57-282 144-391 (405)
20 2c9o_A RUVB-like 1; hexameric 99.9 4.4E-23 1.5E-27 182.5 22.3 125 157-282 297-439 (456)
21 3b9p_A CG5977-PA, isoform A; A 99.9 3.5E-23 1.2E-27 173.6 19.8 214 51-284 11-276 (297)
22 3eie_A Vacuolar protein sortin 99.9 2.2E-23 7.5E-28 176.6 18.7 196 50-261 7-232 (322)
23 3vfd_A Spastin; ATPase, microt 99.9 5.7E-23 2E-27 178.5 20.9 218 50-283 104-368 (389)
24 2qp9_X Vacuolar protein sortin 99.9 3.7E-23 1.3E-27 177.2 18.5 192 50-261 40-265 (355)
25 4b4t_M 26S protease regulatory 99.9 8.7E-23 3E-27 176.7 19.7 209 56-285 176-427 (434)
26 4b4t_I 26S protease regulatory 99.9 1.6E-22 5.3E-27 173.0 18.1 207 54-282 175-425 (437)
27 3d8b_A Fidgetin-like protein 1 99.9 4E-22 1.4E-26 171.1 20.0 218 52-285 75-339 (357)
28 4b4t_L 26S protease subunit RP 99.9 3.2E-22 1.1E-26 173.3 19.5 206 57-283 177-425 (437)
29 2gno_A DNA polymerase III, gam 99.9 2E-22 6.8E-27 168.4 17.0 173 65-259 1-175 (305)
30 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.7E-21 9.4E-26 163.4 23.8 188 55-261 6-227 (322)
31 1lv7_A FTSH; alpha/beta domain 99.9 4.2E-22 1.4E-26 163.5 17.6 209 51-281 2-253 (257)
32 4b4t_H 26S protease regulatory 99.9 5.6E-22 1.9E-26 171.2 18.6 203 58-282 206-452 (467)
33 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.5E-21 8.5E-26 159.3 21.8 204 58-281 3-250 (262)
34 1fnn_A CDC6P, cell division co 99.9 2.9E-21 1E-25 167.8 22.8 230 47-281 6-275 (389)
35 3h4m_A Proteasome-activating n 99.9 6.8E-22 2.3E-26 164.8 17.4 211 55-282 11-260 (285)
36 3syl_A Protein CBBX; photosynt 99.9 6.3E-22 2.1E-26 166.9 17.1 202 62-276 32-282 (309)
37 4b4t_K 26S protease regulatory 99.9 1.6E-21 5.3E-26 168.8 19.7 201 58-279 169-413 (428)
38 2v1u_A Cell division control p 99.9 8E-22 2.7E-26 171.2 18.0 230 48-280 9-276 (387)
39 1ofh_A ATP-dependent HSL prote 99.9 3.5E-21 1.2E-25 162.3 18.5 207 61-282 15-301 (310)
40 2z4s_A Chromosomal replication 99.9 1.5E-21 5.2E-26 171.6 16.1 213 59-281 103-333 (440)
41 2r44_A Uncharacterized protein 99.9 1.8E-21 6E-26 165.7 15.8 221 49-283 15-300 (331)
42 2zan_A Vacuolar protein sortin 99.9 8.4E-21 2.9E-25 167.1 18.7 192 52-262 125-350 (444)
43 2qby_B CDC6 homolog 3, cell di 99.9 6.7E-21 2.3E-25 165.3 16.3 231 46-280 8-270 (384)
44 3cf0_A Transitional endoplasmi 99.9 2E-20 6.8E-25 156.9 18.5 210 55-285 9-286 (301)
45 3te6_A Regulatory protein SIR3 99.9 1.8E-20 6.1E-25 156.3 16.7 215 63-279 22-314 (318)
46 1l8q_A Chromosomal replication 99.9 1.2E-20 4E-25 160.1 15.8 206 59-279 9-239 (324)
47 2ce7_A Cell division protein F 99.9 2.3E-20 7.8E-25 164.1 17.9 204 57-282 12-258 (476)
48 2bjv_A PSP operon transcriptio 99.9 2.2E-20 7.5E-25 153.9 16.5 214 58-275 3-252 (265)
49 1g8p_A Magnesium-chelatase 38 99.8 1.2E-20 4.1E-25 161.7 14.5 227 53-283 16-325 (350)
50 2qby_A CDC6 homolog 1, cell di 99.8 5.2E-20 1.8E-24 159.6 16.2 221 48-280 10-272 (386)
51 3m6a_A ATP-dependent protease 99.8 9.6E-21 3.3E-25 170.5 11.3 218 60-283 80-344 (543)
52 1ojl_A Transcriptional regulat 99.8 1.2E-19 4.1E-24 152.0 16.9 209 62-277 3-249 (304)
53 3pxg_A Negative regulator of g 99.8 2.6E-20 8.7E-25 165.1 12.9 198 46-263 165-384 (468)
54 4fcw_A Chaperone protein CLPB; 99.8 7.5E-20 2.6E-24 154.2 15.2 196 61-263 17-277 (311)
55 2r62_A Cell division protease 99.8 1.1E-21 3.8E-26 162.0 2.7 210 55-285 5-258 (268)
56 1jr3_D DNA polymerase III, del 99.8 7.6E-20 2.6E-24 156.3 13.8 195 74-283 10-212 (343)
57 3hu3_A Transitional endoplasmi 99.8 1.4E-19 4.9E-24 160.3 15.5 209 54-283 197-462 (489)
58 1qvr_A CLPB protein; coiled co 99.8 6E-19 2.1E-23 167.2 16.0 208 46-264 155-392 (854)
59 1r6b_X CLPA protein; AAA+, N-t 99.8 1.1E-18 3.9E-23 163.8 17.2 225 44-280 169-433 (758)
60 1ixz_A ATP-dependent metallopr 99.8 1.9E-18 6.5E-23 141.4 16.2 206 54-277 9-253 (254)
61 1d2n_A N-ethylmaleimide-sensit 99.8 3.3E-19 1.1E-23 147.5 10.9 162 81-263 63-248 (272)
62 2dhr_A FTSH; AAA+ protein, hex 99.8 1.7E-18 5.8E-23 153.1 15.8 210 56-283 26-274 (499)
63 1um8_A ATP-dependent CLP prote 99.8 2.8E-18 9.6E-23 148.4 16.9 207 61-279 21-364 (376)
64 1jbk_A CLPB protein; beta barr 99.8 5.1E-19 1.8E-23 138.3 10.8 166 47-223 8-194 (195)
65 1iy2_A ATP-dependent metallopr 99.8 2.2E-17 7.4E-22 136.9 18.7 204 56-277 35-277 (278)
66 3cf2_A TER ATPase, transitiona 99.8 1.1E-18 3.8E-23 161.4 11.3 209 56-285 199-464 (806)
67 3pxi_A Negative regulator of g 99.8 4.3E-18 1.5E-22 159.7 15.2 198 46-263 165-384 (758)
68 3pxi_A Negative regulator of g 99.8 6.2E-18 2.1E-22 158.6 15.3 186 61-262 491-722 (758)
69 3cf2_A TER ATPase, transitiona 99.8 2.8E-19 9.7E-24 165.3 5.9 207 58-285 474-748 (806)
70 1r6b_X CLPA protein; AAA+, N-t 99.8 1.1E-17 3.6E-22 157.2 16.2 183 61-262 458-713 (758)
71 2x8a_A Nuclear valosin-contain 99.7 1.4E-16 4.8E-21 131.3 19.5 213 57-285 6-269 (274)
72 2p65_A Hypothetical protein PF 99.7 2.9E-18 1E-22 133.3 8.9 159 46-215 7-187 (187)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 4.1E-17 1.4E-21 144.4 16.7 209 61-280 22-285 (500)
74 3hws_A ATP-dependent CLP prote 99.7 6.5E-18 2.2E-22 145.4 10.1 206 62-279 16-348 (363)
75 3k1j_A LON protease, ATP-depen 99.7 2.7E-17 9.2E-22 150.3 12.9 224 51-279 31-374 (604)
76 1qvr_A CLPB protein; coiled co 99.7 1.4E-17 4.9E-22 157.8 11.5 201 60-263 557-818 (854)
77 1w5s_A Origin recognition comp 99.7 1.6E-16 5.6E-21 138.9 16.8 230 48-280 12-293 (412)
78 3f9v_A Minichromosome maintena 99.7 6.2E-18 2.1E-22 153.5 2.0 215 57-280 291-587 (595)
79 3n70_A Transport activator; si 99.7 4.3E-16 1.5E-20 116.1 11.5 132 62-214 2-144 (145)
80 3t15_A Ribulose bisphosphate c 99.6 2.8E-15 9.4E-20 125.0 14.4 150 83-251 37-221 (293)
81 1g41_A Heat shock protein HSLU 99.6 1.4E-14 4.8E-19 125.7 18.3 128 155-282 250-435 (444)
82 3co5_A Putative two-component 99.6 8.8E-16 3E-20 114.2 8.1 128 62-214 5-142 (143)
83 1ypw_A Transitional endoplasmi 99.6 1E-17 3.4E-22 157.2 -4.5 153 57-229 473-663 (806)
84 1ny5_A Transcriptional regulat 99.6 1.5E-14 5.2E-19 125.0 15.6 211 61-275 137-382 (387)
85 3dzd_A Transcriptional regulat 99.6 1.5E-14 5.2E-19 124.1 14.2 199 62-264 130-361 (368)
86 2qen_A Walker-type ATPase; unk 99.6 1.5E-13 5.1E-18 117.3 19.0 189 59-258 10-247 (350)
87 1ypw_A Transitional endoplasmi 99.5 2.2E-14 7.4E-19 134.7 11.8 178 54-252 197-409 (806)
88 3ec2_A DNA replication protein 99.5 6.8E-14 2.3E-18 108.2 8.0 134 53-197 2-145 (180)
89 2fna_A Conserved hypothetical 99.5 1.2E-12 4E-17 112.0 15.8 188 59-259 11-252 (357)
90 3f8t_A Predicted ATPase involv 99.4 1.1E-12 3.9E-17 113.2 11.3 215 53-281 206-484 (506)
91 2kjq_A DNAA-related protein; s 99.4 9.7E-13 3.3E-17 98.1 6.4 112 66-207 24-140 (149)
92 2qgz_A Helicase loader, putati 99.3 2.4E-12 8.2E-17 107.8 7.4 132 52-195 115-258 (308)
93 4akg_A Glutathione S-transfera 99.3 1.7E-11 5.8E-16 125.9 12.3 151 73-230 1260-1434(2695)
94 2w58_A DNAI, primosome compone 99.3 3.5E-12 1.2E-16 100.3 5.0 133 51-195 15-159 (202)
95 1u0j_A DNA replication protein 99.2 1.1E-10 3.9E-15 94.2 11.5 134 71-235 91-258 (267)
96 1tue_A Replication protein E1; 99.2 9.2E-11 3.2E-15 90.5 8.7 133 68-228 43-206 (212)
97 4akg_A Glutathione S-transfera 99.2 3E-09 1E-13 109.6 22.1 169 68-262 633-838 (2695)
98 3upu_A ATP-dependent DNA helic 99.2 6.6E-11 2.3E-15 104.7 8.3 142 46-194 9-164 (459)
99 3vkg_A Dynein heavy chain, cyt 99.1 1.6E-09 5.3E-14 112.5 14.1 150 73-229 1297-1471(3245)
100 1z6t_A APAF-1, apoptotic prote 99.0 8.8E-09 3E-13 94.1 17.4 194 56-261 119-332 (591)
101 2a5y_B CED-4; apoptosis; HET: 99.0 1.1E-08 3.9E-13 92.4 14.3 182 64-256 131-336 (549)
102 3vkg_A Dynein heavy chain, cyt 98.9 2.6E-07 9E-12 96.3 22.1 168 71-264 595-800 (3245)
103 3sfz_A APAF-1, apoptotic pepti 98.8 1.4E-07 4.9E-12 93.1 18.6 193 56-261 119-332 (1249)
104 1vt4_I APAF-1 related killer D 98.8 1.3E-07 4.4E-12 89.5 16.4 177 64-257 131-334 (1221)
105 1ye8_A Protein THEP1, hypothet 98.8 7.9E-08 2.7E-12 73.6 10.9 67 155-223 99-172 (178)
106 2orw_A Thymidine kinase; TMTK, 98.7 9.5E-09 3.3E-13 79.2 3.4 55 155-212 76-137 (184)
107 2r2a_A Uncharacterized protein 98.7 2.6E-08 8.9E-13 77.5 5.6 59 156-214 88-153 (199)
108 1g5t_A COB(I)alamin adenosyltr 98.6 6.5E-08 2.2E-12 74.3 6.3 116 83-207 29-172 (196)
109 2vhj_A Ntpase P4, P4; non- hyd 98.5 1.2E-06 4.1E-11 72.6 10.4 22 84-105 125-146 (331)
110 3e1s_A Exodeoxyribonuclease V, 98.4 4.1E-07 1.4E-11 82.3 8.1 119 66-195 191-316 (574)
111 2r8r_A Sensor protein; KDPD, P 98.4 4.1E-06 1.4E-10 65.8 11.4 167 84-261 8-209 (228)
112 2b8t_A Thymidine kinase; deoxy 98.3 2.6E-06 8.8E-11 67.3 9.2 94 84-193 14-124 (223)
113 1w36_D RECD, exodeoxyribonucle 98.2 3.7E-06 1.3E-10 76.8 9.2 108 83-194 165-298 (608)
114 2j9r_A Thymidine kinase; TK1, 98.2 3.4E-06 1.2E-10 65.7 6.6 118 84-207 30-156 (214)
115 3dl0_A Adenylate kinase; phosp 98.1 0.00019 6.5E-09 56.3 15.7 23 84-106 2-24 (216)
116 3cmu_A Protein RECA, recombina 98.1 9.5E-06 3.2E-10 81.9 9.1 27 81-107 1426-1452(2050)
117 1w4r_A Thymidine kinase; type 98.0 6.2E-06 2.1E-10 63.2 5.2 100 84-192 22-124 (195)
118 3fb4_A Adenylate kinase; psych 98.0 0.00022 7.7E-09 55.9 13.7 23 84-106 2-24 (216)
119 1xx6_A Thymidine kinase; NESG, 97.9 2E-06 6.8E-11 66.3 1.3 24 84-107 10-33 (191)
120 1ly1_A Polynucleotide kinase; 97.9 0.00013 4.3E-09 55.4 11.2 22 84-105 4-25 (181)
121 2fz4_A DNA repair protein RAD2 97.9 4.5E-05 1.5E-09 61.0 8.8 38 66-106 95-132 (237)
122 3trf_A Shikimate kinase, SK; a 97.9 9.8E-06 3.3E-10 62.1 4.3 24 83-106 6-29 (185)
123 1qhx_A CPT, protein (chloramph 97.9 1.3E-05 4.5E-10 61.0 4.7 24 83-106 4-27 (178)
124 2i3b_A HCR-ntpase, human cance 97.9 2.5E-05 8.6E-10 60.1 6.1 69 153-223 103-180 (189)
125 3llm_A ATP-dependent RNA helic 97.8 3.5E-05 1.2E-09 61.5 7.2 22 83-104 77-98 (235)
126 3a4m_A L-seryl-tRNA(SEC) kinas 97.8 0.00042 1.4E-08 56.1 13.6 24 83-106 5-28 (260)
127 2orv_A Thymidine kinase; TP4A 97.8 3.7E-05 1.3E-09 60.5 6.8 102 84-194 21-125 (234)
128 3vaa_A Shikimate kinase, SK; s 97.8 1.6E-05 5.4E-10 61.8 4.5 24 83-106 26-49 (199)
129 3tlx_A Adenylate kinase 2; str 97.8 0.0006 2.1E-08 54.6 13.7 26 81-106 28-53 (243)
130 3zvl_A Bifunctional polynucleo 97.8 9.3E-05 3.2E-09 64.3 9.4 23 84-106 260-282 (416)
131 2cvh_A DNA repair and recombin 97.8 0.00032 1.1E-08 55.0 11.8 34 84-123 22-55 (220)
132 1zuh_A Shikimate kinase; alpha 97.8 1.7E-05 5.9E-10 59.8 4.1 30 83-118 8-37 (168)
133 3cmu_A Protein RECA, recombina 97.8 0.0001 3.5E-09 74.6 10.5 98 82-195 1081-1217(2050)
134 3kb2_A SPBC2 prophage-derived 97.8 2E-05 6.8E-10 59.5 4.3 23 84-106 3-25 (173)
135 2iut_A DNA translocase FTSK; n 97.8 0.001 3.5E-08 59.5 15.6 70 155-224 343-420 (574)
136 1svm_A Large T antigen; AAA+ f 97.8 4.4E-05 1.5E-09 65.2 6.6 26 81-106 168-193 (377)
137 3iij_A Coilin-interacting nucl 97.7 2.2E-05 7.7E-10 59.9 4.3 25 82-106 11-35 (180)
138 1via_A Shikimate kinase; struc 97.7 2.2E-05 7.4E-10 59.7 4.0 23 84-106 6-28 (175)
139 2iyv_A Shikimate kinase, SK; t 97.7 2.5E-05 8.5E-10 59.8 4.3 24 83-106 3-26 (184)
140 3dm5_A SRP54, signal recogniti 97.7 0.0012 4.1E-08 57.4 15.0 25 84-108 102-126 (443)
141 1y63_A LMAJ004144AAA protein; 97.7 2.3E-05 8E-10 60.1 3.9 24 82-105 10-33 (184)
142 1kag_A SKI, shikimate kinase I 97.7 3.1E-05 1.1E-09 58.6 4.4 24 83-106 5-28 (173)
143 3e2i_A Thymidine kinase; Zn-bi 97.7 2.9E-05 1E-09 60.3 3.9 36 154-192 100-135 (219)
144 3sr0_A Adenylate kinase; phosp 97.6 0.00029 1E-08 54.9 9.2 23 84-106 2-24 (206)
145 3kl4_A SRP54, signal recogniti 97.6 0.00044 1.5E-08 60.0 11.0 24 84-107 99-122 (433)
146 3jvv_A Twitching mobility prot 97.6 0.00065 2.2E-08 57.6 11.7 23 84-106 125-147 (356)
147 2ze6_A Isopentenyl transferase 97.6 4.7E-05 1.6E-09 61.5 4.5 23 84-106 3-25 (253)
148 1v5w_A DMC1, meiotic recombina 97.6 0.00055 1.9E-08 57.9 11.1 41 84-124 124-167 (343)
149 3lw7_A Adenylate kinase relate 97.6 3.9E-05 1.3E-09 58.0 3.6 22 84-106 3-24 (179)
150 1gvn_B Zeta; postsegregational 97.6 0.00013 4.6E-09 60.0 6.9 23 84-106 35-57 (287)
151 1aky_A Adenylate kinase; ATP:A 97.6 5.5E-05 1.9E-09 59.7 4.3 25 82-106 4-28 (220)
152 3t61_A Gluconokinase; PSI-biol 97.6 5.6E-05 1.9E-09 58.8 4.3 24 83-106 19-42 (202)
153 3cmw_A Protein RECA, recombina 97.6 0.00021 7.2E-09 71.5 9.2 23 84-106 1084-1106(1706)
154 2ga8_A Hypothetical 39.9 kDa p 97.6 6.3E-05 2.2E-09 63.2 4.8 30 77-106 19-48 (359)
155 1e6c_A Shikimate kinase; phosp 97.6 4.9E-05 1.7E-09 57.4 3.8 23 84-106 4-26 (173)
156 2cdn_A Adenylate kinase; phosp 97.6 6.8E-05 2.3E-09 58.3 4.6 23 84-106 22-44 (201)
157 2c95_A Adenylate kinase 1; tra 97.6 5.2E-05 1.8E-09 58.5 3.8 25 82-106 9-33 (196)
158 2rhm_A Putative kinase; P-loop 97.5 4.6E-05 1.6E-09 58.7 3.4 24 83-106 6-29 (193)
159 4eun_A Thermoresistant glucoki 97.5 6.1E-05 2.1E-09 58.5 4.1 26 81-106 28-53 (200)
160 3cm0_A Adenylate kinase; ATP-b 97.5 5.3E-05 1.8E-09 58.0 3.6 23 84-106 6-28 (186)
161 1kht_A Adenylate kinase; phosp 97.5 4.9E-05 1.7E-09 58.4 3.4 24 83-106 4-27 (192)
162 1u94_A RECA protein, recombina 97.5 0.00044 1.5E-08 58.6 9.5 24 84-107 65-88 (356)
163 1t6n_A Probable ATP-dependent 97.5 0.0016 5.5E-08 51.1 12.3 43 153-195 156-200 (220)
164 3uie_A Adenylyl-sulfate kinase 97.5 8.2E-05 2.8E-09 57.8 4.5 27 80-106 23-49 (200)
165 3sop_A Neuronal-specific septi 97.5 0.0044 1.5E-07 50.4 14.9 23 84-106 4-26 (270)
166 2pt5_A Shikimate kinase, SK; a 97.5 7.1E-05 2.4E-09 56.3 3.9 23 84-106 2-24 (168)
167 3b6e_A Interferon-induced heli 97.5 0.00013 4.5E-09 57.0 5.6 24 83-106 49-72 (216)
168 2zr9_A Protein RECA, recombina 97.5 0.00035 1.2E-08 59.1 8.5 24 84-107 63-86 (349)
169 1tev_A UMP-CMP kinase; ploop, 97.5 7.5E-05 2.6E-09 57.5 3.8 23 84-106 5-27 (196)
170 1ak2_A Adenylate kinase isoenz 97.5 9.8E-05 3.3E-09 58.8 4.5 24 83-106 17-40 (233)
171 2p5t_B PEZT; postsegregational 97.5 0.00015 5.3E-09 58.5 5.7 23 84-106 34-56 (253)
172 2bwj_A Adenylate kinase 5; pho 97.5 7.4E-05 2.5E-09 57.8 3.6 24 83-106 13-36 (199)
173 1zak_A Adenylate kinase; ATP:A 97.5 7.1E-05 2.4E-09 59.2 3.5 24 83-106 6-29 (222)
174 3hr8_A Protein RECA; alpha and 97.5 0.00078 2.7E-08 57.0 10.0 24 84-107 63-86 (356)
175 1nks_A Adenylate kinase; therm 97.4 6.5E-05 2.2E-09 57.8 3.2 23 84-106 3-25 (194)
176 1qde_A EIF4A, translation init 97.4 0.00044 1.5E-08 54.5 8.0 41 154-194 154-195 (224)
177 1knq_A Gluconate kinase; ALFA/ 97.4 0.0001 3.5E-09 55.8 4.1 23 84-106 10-32 (175)
178 2qor_A Guanylate kinase; phosp 97.4 9.3E-05 3.2E-09 57.7 3.9 24 83-106 13-36 (204)
179 3vkw_A Replicase large subunit 97.4 0.00015 5E-09 62.9 5.5 96 85-194 164-269 (446)
180 3be4_A Adenylate kinase; malar 97.4 7.5E-05 2.6E-09 58.8 3.4 24 83-106 6-29 (217)
181 1zp6_A Hypothetical protein AT 97.4 6.4E-05 2.2E-09 57.8 2.8 24 83-106 10-33 (191)
182 3umf_A Adenylate kinase; rossm 97.4 0.00011 3.6E-09 57.8 4.0 23 84-106 31-53 (217)
183 1zd8_A GTP:AMP phosphotransfer 97.4 8.3E-05 2.8E-09 59.0 3.5 24 83-106 8-31 (227)
184 1kgd_A CASK, peripheral plasma 97.4 0.00011 3.6E-09 56.1 3.9 23 84-106 7-29 (180)
185 3h1t_A Type I site-specific re 97.4 0.00037 1.3E-08 63.5 8.1 41 66-107 183-223 (590)
186 2vli_A Antibiotic resistance p 97.4 7.6E-05 2.6E-09 56.9 3.0 24 83-106 6-29 (183)
187 1ukz_A Uridylate kinase; trans 97.4 9.8E-05 3.4E-09 57.4 3.6 23 84-106 17-39 (203)
188 1xp8_A RECA protein, recombina 97.4 0.0016 5.6E-08 55.3 11.4 24 84-107 76-99 (366)
189 1qf9_A UMP/CMP kinase, protein 97.4 8.8E-05 3E-09 57.0 3.3 23 84-106 8-30 (194)
190 1pzn_A RAD51, DNA repair and r 97.4 0.0005 1.7E-08 58.2 8.1 23 84-106 133-155 (349)
191 3c8u_A Fructokinase; YP_612366 97.4 0.00015 5.3E-09 56.6 4.6 38 69-106 7-46 (208)
192 3nwj_A ATSK2; P loop, shikimat 97.4 0.00014 4.7E-09 58.6 4.2 24 83-106 49-72 (250)
193 1vec_A ATP-dependent RNA helic 97.4 0.00065 2.2E-08 52.7 8.0 40 154-193 145-185 (206)
194 1ex7_A Guanylate kinase; subst 97.4 0.00012 4.3E-09 55.9 3.6 23 84-106 3-25 (186)
195 3pey_A ATP-dependent RNA helic 97.3 0.0009 3.1E-08 57.3 9.5 28 79-106 41-68 (395)
196 1cke_A CK, MSSA, protein (cyti 97.3 0.00015 5E-09 57.4 4.2 24 83-106 6-29 (227)
197 1ltq_A Polynucleotide kinase; 97.3 0.0021 7.3E-08 53.0 11.4 23 84-106 4-26 (301)
198 1e4v_A Adenylate kinase; trans 97.3 0.00012 4E-09 57.5 3.5 23 84-106 2-24 (214)
199 2plr_A DTMP kinase, probable t 97.3 0.00014 4.6E-09 56.9 3.7 24 84-107 6-29 (213)
200 3tau_A Guanylate kinase, GMP k 97.3 0.00013 4.4E-09 57.1 3.5 25 82-106 8-32 (208)
201 3crm_A TRNA delta(2)-isopenten 97.3 0.00014 4.8E-09 60.5 3.9 23 84-106 7-29 (323)
202 3tui_C Methionine import ATP-b 97.3 0.0019 6.6E-08 54.6 10.8 43 154-196 180-225 (366)
203 4gp7_A Metallophosphoesterase; 97.3 0.0052 1.8E-07 46.2 12.3 18 84-101 11-28 (171)
204 1rz3_A Hypothetical protein rb 97.3 0.00033 1.1E-08 54.4 5.7 40 67-106 4-46 (201)
205 2jaq_A Deoxyguanosine kinase; 97.3 0.00015 5E-09 56.3 3.7 23 84-106 2-24 (205)
206 1nrj_B SR-beta, signal recogni 97.3 0.0033 1.1E-07 49.1 11.6 27 81-107 11-37 (218)
207 4b3f_X DNA-binding protein smu 97.3 0.00027 9.4E-09 65.0 6.0 41 65-107 190-230 (646)
208 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.0012 4.2E-08 55.3 9.5 36 69-106 160-195 (330)
209 2gxq_A Heat resistant RNA depe 97.3 0.00073 2.5E-08 52.4 7.6 21 83-103 39-59 (207)
210 2ius_A DNA translocase FTSK; n 97.3 0.0039 1.3E-07 55.2 12.8 68 157-224 299-374 (512)
211 2px0_A Flagellar biosynthesis 97.3 0.0016 5.5E-08 53.7 9.7 25 83-107 106-130 (296)
212 2xb4_A Adenylate kinase; ATP-b 97.3 0.0002 7E-09 56.6 4.1 23 84-106 2-24 (223)
213 3tr0_A Guanylate kinase, GMP k 97.3 0.0002 7E-09 55.6 4.1 24 83-106 8-31 (205)
214 3ney_A 55 kDa erythrocyte memb 97.3 0.00022 7.4E-09 55.1 4.1 24 83-106 20-43 (197)
215 3cmw_A Protein RECA, recombina 97.3 0.0011 3.7E-08 66.6 9.9 25 83-107 35-59 (1706)
216 2bbw_A Adenylate kinase 4, AK4 97.3 0.00021 7.1E-09 57.4 4.2 25 82-106 27-51 (246)
217 3a00_A Guanylate kinase, GMP k 97.3 0.00018 6.2E-09 55.1 3.7 23 84-106 3-25 (186)
218 2yvu_A Probable adenylyl-sulfa 97.3 0.00015 5.2E-09 55.5 3.2 24 83-106 14-37 (186)
219 2grj_A Dephospho-COA kinase; T 97.2 0.0002 6.9E-09 55.2 3.8 22 85-106 15-36 (192)
220 2wwf_A Thymidilate kinase, put 97.2 0.00018 6.2E-09 56.2 3.5 24 83-106 11-34 (212)
221 1m7g_A Adenylylsulfate kinase; 97.2 0.00033 1.1E-08 54.8 5.0 28 79-106 22-49 (211)
222 2j41_A Guanylate kinase; GMP, 97.2 0.00023 7.8E-09 55.4 4.0 25 82-106 6-30 (207)
223 1kao_A RAP2A; GTP-binding prot 97.2 0.011 3.8E-07 43.5 13.3 23 84-106 5-27 (167)
224 1lvg_A Guanylate kinase, GMP k 97.2 0.00023 7.8E-09 55.2 3.9 24 83-106 5-28 (198)
225 2if2_A Dephospho-COA kinase; a 97.2 0.00016 5.6E-09 56.1 3.1 22 84-106 3-24 (204)
226 2z0h_A DTMP kinase, thymidylat 97.2 0.00021 7.1E-09 55.1 3.6 22 85-106 3-24 (197)
227 2pbr_A DTMP kinase, thymidylat 97.2 0.00021 7.1E-09 55.0 3.6 23 84-106 2-24 (195)
228 1nn5_A Similar to deoxythymidy 97.2 0.00021 7.3E-09 55.9 3.7 25 82-106 9-33 (215)
229 2v54_A DTMP kinase, thymidylat 97.2 0.0002 6.9E-09 55.5 3.5 24 83-106 5-28 (204)
230 3r20_A Cytidylate kinase; stru 97.2 0.00027 9.3E-09 56.1 4.2 24 83-106 10-33 (233)
231 2bdt_A BH3686; alpha-beta prot 97.2 0.0002 6.9E-09 54.9 3.4 23 84-106 4-26 (189)
232 1rif_A DAR protein, DNA helica 97.2 0.0014 4.6E-08 53.7 8.5 38 66-106 115-152 (282)
233 1jjv_A Dephospho-COA kinase; P 97.2 0.00021 7.3E-09 55.6 3.2 21 84-104 4-24 (206)
234 4e22_A Cytidylate kinase; P-lo 97.2 0.00036 1.2E-08 56.3 4.6 24 83-106 28-51 (252)
235 2xau_A PRE-mRNA-splicing facto 97.2 0.0016 5.5E-08 61.1 9.5 32 72-105 101-132 (773)
236 3ake_A Cytidylate kinase; CMP 97.2 0.0003 1E-08 54.7 4.0 23 84-106 4-26 (208)
237 2wsm_A Hydrogenase expression/ 97.1 0.00029 1E-08 55.4 3.9 44 63-106 11-54 (221)
238 3nh6_A ATP-binding cassette SU 97.1 0.0016 5.3E-08 54.0 8.2 43 154-196 207-250 (306)
239 1hv8_A Putative ATP-dependent 97.1 0.002 7E-08 54.4 9.3 24 83-106 45-68 (367)
240 3a8t_A Adenylate isopentenyltr 97.1 0.00019 6.5E-09 59.9 2.7 23 84-106 42-64 (339)
241 3fmo_B ATP-dependent RNA helic 97.1 0.0018 6E-08 53.6 8.4 39 155-193 235-275 (300)
242 3lxw_A GTPase IMAP family memb 97.1 0.047 1.6E-06 43.5 16.6 23 84-106 23-45 (247)
243 1z6g_A Guanylate kinase; struc 97.1 0.00035 1.2E-08 55.0 3.9 24 83-106 24-47 (218)
244 1odf_A YGR205W, hypothetical 3 97.1 0.00079 2.7E-08 55.4 6.1 24 84-107 33-56 (290)
245 3bor_A Human initiation factor 97.1 0.00098 3.3E-08 53.1 6.6 41 154-194 172-213 (237)
246 3foz_A TRNA delta(2)-isopenten 97.1 0.00035 1.2E-08 57.5 3.7 23 84-106 12-34 (316)
247 3fho_A ATP-dependent RNA helic 97.1 0.0015 5.1E-08 58.3 8.1 42 153-194 257-300 (508)
248 2pez_A Bifunctional 3'-phospho 97.1 0.00038 1.3E-08 52.8 3.7 23 84-106 7-29 (179)
249 1s96_A Guanylate kinase, GMP k 97.1 0.00042 1.5E-08 54.5 3.9 24 83-106 17-40 (219)
250 3ber_A Probable ATP-dependent 97.0 0.0015 5E-08 52.5 7.2 19 83-101 81-99 (249)
251 3d3q_A TRNA delta(2)-isopenten 97.0 0.00041 1.4E-08 58.1 3.8 23 84-106 9-31 (340)
252 1znw_A Guanylate kinase, GMP k 97.0 0.00045 1.6E-08 53.8 3.9 25 82-106 20-44 (207)
253 3fht_A ATP-dependent RNA helic 97.0 0.0023 7.9E-08 55.1 8.8 24 79-102 61-84 (412)
254 3exa_A TRNA delta(2)-isopenten 97.0 0.00034 1.2E-08 57.7 3.2 23 84-106 5-27 (322)
255 2hf9_A Probable hydrogenase ni 97.0 0.00068 2.3E-08 53.4 4.9 42 66-107 22-63 (226)
256 3llu_A RAS-related GTP-binding 97.0 0.0066 2.2E-07 46.5 10.4 22 84-105 22-43 (196)
257 3dkp_A Probable ATP-dependent 97.0 0.0086 2.9E-07 47.7 11.3 18 83-100 67-84 (245)
258 2oxc_A Probable ATP-dependent 97.0 0.0023 7.9E-08 50.6 7.8 24 83-106 62-86 (230)
259 4dkx_A RAS-related protein RAB 97.0 0.0031 1.1E-07 49.4 8.4 22 85-106 16-37 (216)
260 1s2m_A Putative ATP-dependent 97.0 0.0075 2.5E-07 51.7 11.6 24 83-106 59-82 (400)
261 4gzl_A RAS-related C3 botulinu 97.0 0.00016 5.3E-09 56.3 0.8 42 65-106 13-54 (204)
262 3b85_A Phosphate starvation-in 97.0 0.00032 1.1E-08 54.8 2.6 22 84-105 24-45 (208)
263 3asz_A Uridine kinase; cytidin 97.0 0.00039 1.3E-08 54.3 3.1 23 84-106 8-30 (211)
264 1uj2_A Uridine-cytidine kinase 97.0 0.00056 1.9E-08 55.1 4.0 23 84-106 24-46 (252)
265 1n0w_A DNA repair protein RAD5 97.0 0.002 7E-08 51.2 7.2 23 84-106 26-48 (243)
266 1htw_A HI0065; nucleotide-bind 97.0 0.00055 1.9E-08 50.9 3.6 24 83-106 34-57 (158)
267 1p9r_A General secretion pathw 96.9 0.0013 4.5E-08 56.9 6.4 48 59-107 145-192 (418)
268 1vht_A Dephospho-COA kinase; s 96.9 0.00052 1.8E-08 53.9 3.6 22 84-106 6-27 (218)
269 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00091 3.1E-08 50.8 4.8 23 84-106 9-31 (184)
270 1q3t_A Cytidylate kinase; nucl 96.9 0.00075 2.6E-08 53.8 4.4 24 83-106 17-40 (236)
271 1g8f_A Sulfate adenylyltransfe 96.9 0.00084 2.9E-08 59.5 5.0 43 65-107 376-420 (511)
272 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.005 1.7E-07 46.1 8.7 23 84-106 9-31 (177)
273 1q0u_A Bstdead; DEAD protein, 96.9 0.002 7E-08 50.4 6.7 21 83-103 42-62 (219)
274 2eyu_A Twitching motility prot 96.9 0.00087 3E-08 54.3 4.6 26 81-106 24-49 (261)
275 3bwd_D RAC-like GTP-binding pr 96.9 0.00066 2.3E-08 51.3 3.6 24 83-106 9-32 (182)
276 3tqc_A Pantothenate kinase; bi 96.9 0.0015 5.2E-08 54.4 6.0 23 84-106 94-116 (321)
277 2h92_A Cytidylate kinase; ross 96.9 0.00069 2.3E-08 53.2 3.8 23 84-106 5-27 (219)
278 3iuy_A Probable ATP-dependent 96.9 0.0049 1.7E-07 48.5 8.8 40 154-193 166-206 (228)
279 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00077 2.6E-08 53.2 4.1 24 83-106 24-47 (235)
280 2v9p_A Replication protein E1; 96.9 0.00085 2.9E-08 55.5 4.2 26 81-106 125-150 (305)
281 4a74_A DNA repair and recombin 96.9 0.0018 6E-08 51.1 6.0 23 84-106 27-49 (231)
282 1z0j_A RAB-22, RAS-related pro 96.8 0.0051 1.8E-07 45.6 8.3 23 84-106 8-30 (170)
283 2ehv_A Hypothetical protein PH 96.8 0.0007 2.4E-08 54.2 3.7 22 83-104 31-52 (251)
284 4eaq_A DTMP kinase, thymidylat 96.8 0.00073 2.5E-08 53.6 3.7 24 84-107 28-51 (229)
285 1uf9_A TT1252 protein; P-loop, 96.8 0.00057 2E-08 52.8 3.0 23 83-105 9-31 (203)
286 1gtv_A TMK, thymidylate kinase 96.8 0.00024 8.3E-09 55.5 0.8 23 84-106 2-24 (214)
287 1gwn_A RHO-related GTP-binding 96.8 0.0014 4.7E-08 51.0 5.1 23 84-106 30-52 (205)
288 2eyq_A TRCF, transcription-rep 96.8 0.014 4.7E-07 57.3 13.0 42 63-104 605-646 (1151)
289 1rj9_A FTSY, signal recognitio 96.8 0.00089 3E-08 55.5 4.2 25 83-107 103-127 (304)
290 2f6r_A COA synthase, bifunctio 96.8 0.00061 2.1E-08 55.9 3.1 22 84-106 77-98 (281)
291 2qmh_A HPR kinase/phosphorylas 96.8 0.00047 1.6E-08 52.9 2.3 23 84-106 36-58 (205)
292 2ce2_X GTPase HRAS; signaling 96.8 0.0059 2E-07 44.9 8.3 23 84-106 5-27 (166)
293 3io5_A Recombination and repai 96.8 0.00057 2E-08 56.4 2.7 24 84-107 30-53 (333)
294 2qt1_A Nicotinamide riboside k 96.8 0.00042 1.4E-08 54.0 1.9 23 84-106 23-45 (207)
295 1xjc_A MOBB protein homolog; s 96.8 0.00096 3.3E-08 50.0 3.7 25 83-107 5-29 (169)
296 2pl3_A Probable ATP-dependent 96.8 0.0049 1.7E-07 48.8 8.1 40 154-193 170-210 (236)
297 3lnc_A Guanylate kinase, GMP k 96.8 0.00052 1.8E-08 54.4 2.4 24 83-106 28-52 (231)
298 1u8z_A RAS-related protein RAL 96.8 0.0087 3E-07 44.1 9.0 23 84-106 6-28 (168)
299 3fmp_B ATP-dependent RNA helic 96.8 0.0038 1.3E-07 55.1 8.1 23 79-101 128-150 (479)
300 2qag_C Septin-7; cell cycle, c 96.8 0.015 5E-07 50.4 11.4 23 85-107 34-56 (418)
301 3eiq_A Eukaryotic initiation f 96.8 0.0047 1.6E-07 53.2 8.5 41 154-194 182-223 (414)
302 2jeo_A Uridine-cytidine kinase 96.7 0.00095 3.3E-08 53.5 3.7 23 84-106 27-49 (245)
303 2j37_W Signal recognition part 96.7 0.0076 2.6E-07 53.4 9.7 24 84-107 103-126 (504)
304 2j0s_A ATP-dependent RNA helic 96.7 0.0073 2.5E-07 52.0 9.5 24 83-106 75-98 (410)
305 1np6_A Molybdopterin-guanine d 96.7 0.0011 3.7E-08 50.2 3.7 24 83-106 7-30 (174)
306 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0011 3.8E-08 57.8 4.1 26 81-106 150-175 (473)
307 3q3j_B RHO-related GTP-binding 96.7 0.00064 2.2E-08 53.2 2.4 23 84-106 29-51 (214)
308 3tif_A Uncharacterized ABC tra 96.7 0.00091 3.1E-08 53.3 3.3 43 154-196 162-207 (235)
309 2zpa_A Uncharacterized protein 96.7 0.0042 1.5E-07 56.6 7.9 97 69-176 180-276 (671)
310 1xti_A Probable ATP-dependent 96.7 0.01 3.5E-07 50.7 10.1 40 153-192 150-191 (391)
311 2gk6_A Regulator of nonsense t 96.7 0.0016 5.6E-08 59.6 5.3 39 66-107 182-220 (624)
312 4a82_A Cystic fibrosis transme 96.7 0.0064 2.2E-07 55.1 9.0 44 154-197 494-538 (578)
313 2bov_A RAla, RAS-related prote 96.7 0.013 4.4E-07 45.0 9.7 23 84-106 16-38 (206)
314 2a9k_A RAS-related protein RAL 96.7 0.01 3.5E-07 44.7 9.0 23 84-106 20-42 (187)
315 3tw8_B RAS-related protein RAB 96.7 0.00079 2.7E-08 50.7 2.6 22 84-105 11-32 (181)
316 3j16_B RLI1P; ribosome recycli 96.7 0.018 6E-07 52.4 11.8 55 154-209 238-294 (608)
317 3aez_A Pantothenate kinase; tr 96.7 0.0011 3.8E-08 55.1 3.7 24 84-107 92-115 (312)
318 3oes_A GTPase rhebl1; small GT 96.7 0.0019 6.5E-08 49.8 4.8 23 84-106 26-48 (201)
319 1wp9_A ATP-dependent RNA helic 96.7 0.012 4E-07 51.6 10.5 23 84-106 25-47 (494)
320 3bh0_A DNAB-like replicative h 96.7 0.013 4.6E-07 48.7 10.2 24 84-107 70-93 (315)
321 2z43_A DNA repair and recombin 96.6 0.0034 1.2E-07 52.5 6.6 41 84-124 109-152 (324)
322 1z0f_A RAB14, member RAS oncog 96.6 0.0093 3.2E-07 44.6 8.5 23 84-106 17-39 (179)
323 3eph_A TRNA isopentenyltransfe 96.6 0.001 3.6E-08 56.8 3.3 23 84-106 4-26 (409)
324 3fe2_A Probable ATP-dependent 96.6 0.0073 2.5E-07 48.1 8.2 41 153-193 174-215 (242)
325 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.00052 1.8E-08 52.0 1.3 23 84-106 7-29 (186)
326 2v6i_A RNA helicase; membrane, 96.6 0.0042 1.4E-07 54.1 7.2 21 83-103 3-24 (431)
327 3bc1_A RAS-related protein RAB 96.6 0.0062 2.1E-07 46.2 7.5 23 84-106 13-35 (195)
328 2oap_1 GSPE-2, type II secreti 96.6 0.0016 5.6E-08 57.9 4.7 38 67-106 247-284 (511)
329 1fuu_A Yeast initiation factor 96.6 0.0047 1.6E-07 52.8 7.5 41 154-194 161-202 (394)
330 2z0m_A 337AA long hypothetical 96.6 0.004 1.4E-07 51.9 6.9 24 83-106 32-55 (337)
331 2oca_A DAR protein, ATP-depend 96.6 0.0082 2.8E-07 53.4 9.3 38 66-106 115-152 (510)
332 3reg_A RHO-like small GTPase; 96.6 0.00063 2.2E-08 52.2 1.7 23 84-106 25-47 (194)
333 3fdi_A Uncharacterized protein 96.6 0.0016 5.4E-08 50.5 3.9 24 83-106 7-30 (201)
334 2cbz_A Multidrug resistance-as 96.6 0.0012 4.1E-08 52.6 3.3 44 154-197 144-191 (237)
335 3ly5_A ATP-dependent RNA helic 96.6 0.0035 1.2E-07 50.7 6.0 41 153-193 199-240 (262)
336 2onk_A Molybdate/tungstate ABC 96.6 0.0012 4.3E-08 52.6 3.3 43 154-196 143-188 (240)
337 3qf4_A ABC transporter, ATP-bi 96.6 0.009 3.1E-07 54.2 9.2 43 154-196 496-539 (587)
338 2pcj_A ABC transporter, lipopr 96.6 0.001 3.4E-08 52.6 2.6 42 154-195 157-200 (224)
339 3th5_A RAS-related C3 botulinu 95.6 0.00036 1.2E-08 54.1 0.0 26 81-106 29-54 (204)
340 3clv_A RAB5 protein, putative; 96.6 0.0068 2.3E-07 46.4 7.4 23 84-106 9-31 (208)
341 1sq5_A Pantothenate kinase; P- 96.6 0.0022 7.5E-08 53.3 4.8 24 83-106 81-104 (308)
342 1b0u_A Histidine permease; ABC 96.6 0.0013 4.5E-08 53.3 3.3 42 154-195 170-213 (262)
343 3gmt_A Adenylate kinase; ssgci 96.6 0.0017 5.8E-08 51.2 3.8 22 85-106 11-32 (230)
344 3cr8_A Sulfate adenylyltranfer 96.5 0.0012 4.2E-08 59.2 3.3 41 67-107 352-394 (552)
345 4f4c_A Multidrug resistance pr 96.5 0.004 1.4E-07 61.9 7.2 45 154-198 1234-1279(1321)
346 1sgw_A Putative ABC transporte 96.5 0.0014 4.7E-08 51.4 3.2 24 83-106 36-59 (214)
347 4edh_A DTMP kinase, thymidylat 96.5 0.0024 8.2E-08 50.0 4.5 24 84-107 8-31 (213)
348 3p32_A Probable GTPase RV1496/ 96.5 0.0031 1.1E-07 53.5 5.6 28 80-107 77-104 (355)
349 2va8_A SSO2462, SKI2-type heli 96.5 0.0033 1.1E-07 58.6 6.2 22 82-103 46-67 (715)
350 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0013 4.6E-08 55.5 3.3 24 83-106 31-54 (359)
351 2dr3_A UPF0273 protein PH0284; 96.5 0.0016 5.4E-08 52.0 3.6 23 84-106 25-47 (247)
352 3qf4_B Uncharacterized ABC tra 96.5 0.0076 2.6E-07 54.9 8.5 44 154-197 508-552 (598)
353 2ged_A SR-beta, signal recogni 96.5 0.0034 1.2E-07 47.9 5.4 24 83-106 49-72 (193)
354 2ewv_A Twitching motility prot 96.5 0.0019 6.4E-08 55.2 4.2 25 82-106 136-160 (372)
355 3b9q_A Chloroplast SRP recepto 96.5 0.0017 5.7E-08 53.8 3.7 24 84-107 102-125 (302)
356 3dz8_A RAS-related protein RAB 96.5 0.0071 2.4E-07 46.1 7.0 24 84-107 25-48 (191)
357 3rlf_A Maltose/maltodextrin im 96.5 0.0018 6.1E-08 55.2 3.8 43 154-196 150-195 (381)
358 2it1_A 362AA long hypothetical 96.5 0.0018 6.2E-08 54.9 3.8 43 154-196 150-195 (362)
359 2olj_A Amino acid ABC transpor 96.5 0.0016 5.3E-08 52.8 3.3 42 154-195 176-219 (263)
360 3e70_C DPA, signal recognition 96.5 0.0017 6E-08 54.3 3.7 23 84-106 131-153 (328)
361 2gza_A Type IV secretion syste 96.5 0.0025 8.4E-08 54.2 4.7 34 71-106 166-199 (361)
362 2yyz_A Sugar ABC transporter, 96.5 0.0018 6.2E-08 54.8 3.8 43 154-196 150-195 (359)
363 3lda_A DNA repair protein RAD5 96.5 0.005 1.7E-07 53.0 6.6 41 84-124 180-223 (400)
364 2xxa_A Signal recognition part 96.5 0.022 7.6E-07 49.5 10.7 24 84-107 102-125 (433)
365 2zu0_C Probable ATP-dependent 96.5 0.002 6.7E-08 52.4 3.8 43 154-196 181-225 (267)
366 3szr_A Interferon-induced GTP- 96.5 0.0084 2.9E-07 54.6 8.4 24 83-106 46-69 (608)
367 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0019 6.4E-08 52.0 3.6 43 154-196 160-204 (250)
368 1v43_A Sugar-binding transport 96.5 0.0019 6.7E-08 54.9 3.8 43 154-196 158-203 (372)
369 3gfo_A Cobalt import ATP-bindi 96.5 0.0016 5.3E-08 53.2 3.1 52 154-206 160-214 (275)
370 1z47_A CYSA, putative ABC-tran 96.5 0.0018 6.2E-08 54.7 3.6 43 154-196 162-207 (355)
371 1gm5_A RECG; helicase, replica 96.5 0.0069 2.3E-07 56.7 7.8 41 65-105 372-412 (780)
372 2f9l_A RAB11B, member RAS onco 96.5 0.0018 6.1E-08 49.9 3.3 23 84-106 7-29 (199)
373 1cr0_A DNA primase/helicase; R 96.4 0.0019 6.5E-08 53.3 3.7 25 83-107 36-60 (296)
374 1a7j_A Phosphoribulokinase; tr 96.4 0.001 3.6E-08 54.7 2.1 24 83-106 6-29 (290)
375 1g6h_A High-affinity branched- 96.4 0.0016 5.4E-08 52.6 3.1 43 154-196 170-214 (257)
376 2wjy_A Regulator of nonsense t 96.4 0.003 1E-07 59.4 5.3 39 66-107 358-396 (800)
377 2ff7_A Alpha-hemolysin translo 96.4 0.0016 5.5E-08 52.2 3.1 43 154-196 162-205 (247)
378 2fwr_A DNA repair protein RAD2 96.4 0.0075 2.6E-07 53.1 7.7 38 66-106 95-132 (472)
379 2pze_A Cystic fibrosis transme 96.4 0.0017 5.8E-08 51.5 3.2 43 154-196 147-191 (229)
380 2dyk_A GTP-binding protein; GT 96.4 0.0017 6E-08 47.8 3.1 23 84-106 3-25 (161)
381 1nlf_A Regulatory protein REPA 96.4 0.0018 6.3E-08 52.9 3.5 24 83-106 31-54 (279)
382 1ji0_A ABC transporter; ATP bi 96.4 0.0017 5.7E-08 51.9 3.1 42 154-195 156-199 (240)
383 1oix_A RAS-related protein RAB 96.4 0.0016 5.5E-08 49.9 2.9 24 84-107 31-54 (191)
384 2f1r_A Molybdopterin-guanine d 96.4 0.00081 2.8E-08 50.7 1.2 23 84-106 4-26 (171)
385 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.8E-08 52.7 3.1 42 155-196 165-209 (266)
386 2ixe_A Antigen peptide transpo 96.4 0.0018 6E-08 52.8 3.3 43 154-196 173-218 (271)
387 2i1q_A DNA repair and recombin 96.4 0.0045 1.5E-07 51.7 5.9 23 84-106 100-122 (322)
388 1vpl_A ABC transporter, ATP-bi 96.4 0.0018 6.3E-08 52.2 3.3 42 154-195 163-206 (256)
389 2ghi_A Transport protein; mult 96.4 0.0018 6.3E-08 52.3 3.3 43 154-196 172-215 (260)
390 1vma_A Cell division protein F 96.4 0.0021 7.3E-08 53.2 3.7 24 84-107 106-129 (306)
391 2qi9_C Vitamin B12 import ATP- 96.4 0.0018 6.2E-08 52.0 3.2 38 158-195 154-193 (249)
392 3ozx_A RNAse L inhibitor; ATP 96.4 0.016 5.5E-07 51.9 9.6 96 85-194 28-196 (538)
393 1mv5_A LMRA, multidrug resista 96.4 0.0016 5.5E-08 52.1 2.7 23 84-106 30-52 (243)
394 3tqf_A HPR(Ser) kinase; transf 96.4 0.0018 6.2E-08 48.4 2.8 22 84-105 18-39 (181)
395 1g29_1 MALK, maltose transport 96.4 0.0021 7.3E-08 54.7 3.6 43 154-196 156-201 (372)
396 3thx_A DNA mismatch repair pro 96.4 0.021 7.3E-07 54.4 10.7 21 84-104 664-684 (934)
397 3kta_A Chromosome segregation 96.4 0.002 6.8E-08 48.9 3.1 23 84-106 28-50 (182)
398 2wji_A Ferrous iron transport 96.4 0.0021 7.2E-08 47.8 3.2 22 84-105 5-26 (165)
399 2zej_A Dardarin, leucine-rich 96.4 0.0017 5.7E-08 49.4 2.7 21 84-104 4-24 (184)
400 2ihy_A ABC transporter, ATP-bi 96.4 0.002 6.7E-08 52.7 3.2 43 154-196 178-224 (279)
401 3thx_B DNA mismatch repair pro 96.3 0.022 7.6E-07 54.1 10.7 22 84-105 675-696 (918)
402 1zj6_A ADP-ribosylation factor 96.3 0.0036 1.2E-07 47.6 4.4 32 73-105 8-39 (187)
403 3v9p_A DTMP kinase, thymidylat 96.3 0.0019 6.3E-08 51.1 2.8 24 83-106 26-49 (227)
404 2yz2_A Putative ABC transporte 96.3 0.0022 7.4E-08 52.1 3.3 43 154-196 155-199 (266)
405 2il1_A RAB12; G-protein, GDP, 96.3 0.012 4.1E-07 44.8 7.4 23 84-106 28-50 (192)
406 2yhs_A FTSY, cell division pro 96.3 0.0055 1.9E-07 53.9 5.9 23 84-106 295-317 (503)
407 3d31_A Sulfate/molybdate ABC t 96.3 0.0016 5.6E-08 54.9 2.6 42 154-195 144-188 (348)
408 2p6r_A Afuhel308 helicase; pro 96.3 0.0074 2.5E-07 56.1 7.2 33 65-103 29-61 (702)
409 2zj8_A DNA helicase, putative 96.3 0.013 4.4E-07 54.6 8.7 18 83-100 40-57 (720)
410 4a1f_A DNAB helicase, replicat 96.3 0.04 1.4E-06 46.1 10.8 24 84-107 48-71 (338)
411 2nq2_C Hypothetical ABC transp 96.3 0.0023 7.8E-08 51.5 3.1 42 154-195 145-189 (253)
412 2og2_A Putative signal recogni 96.3 0.0028 9.5E-08 53.7 3.7 23 85-107 160-182 (359)
413 3l9o_A ATP-dependent RNA helic 96.3 0.012 4.2E-07 57.3 8.6 24 83-106 200-223 (1108)
414 2xzl_A ATP-dependent helicase 96.3 0.0045 1.5E-07 58.2 5.5 38 66-106 362-399 (802)
415 2ocp_A DGK, deoxyguanosine kin 96.3 0.0022 7.5E-08 51.2 2.9 23 84-106 4-26 (241)
416 2q6t_A DNAB replication FORK h 96.2 0.038 1.3E-06 48.3 11.0 37 84-122 202-238 (444)
417 1m8p_A Sulfate adenylyltransfe 96.2 0.0032 1.1E-07 56.8 4.1 23 84-106 398-420 (573)
418 3hdt_A Putative kinase; struct 96.2 0.0029 1E-07 49.8 3.4 23 84-106 16-38 (223)
419 3o8b_A HCV NS3 protease/helica 96.2 0.017 5.7E-07 52.9 8.8 30 154-183 317-346 (666)
420 1z2a_A RAS-related protein RAB 96.2 0.003 1E-07 46.8 3.4 23 84-106 7-29 (168)
421 4f4c_A Multidrug resistance pr 96.2 0.014 4.6E-07 58.2 8.8 26 81-106 443-468 (1321)
422 2atx_A Small GTP binding prote 96.2 0.0011 3.7E-08 50.8 0.8 23 84-106 20-42 (194)
423 3gd7_A Fusion complex of cysti 96.2 0.0026 8.8E-08 54.5 3.3 43 154-196 172-215 (390)
424 1lw7_A Transcriptional regulat 96.2 0.0024 8.1E-08 54.4 3.0 24 84-107 172-195 (365)
425 2v3c_C SRP54, signal recogniti 96.2 0.0027 9.3E-08 55.2 3.4 24 83-106 100-123 (432)
426 2gks_A Bifunctional SAT/APS ki 96.2 0.0048 1.6E-07 55.4 5.1 41 66-106 354-396 (546)
427 2j0v_A RAC-like GTP-binding pr 96.2 0.00085 2.9E-08 52.3 0.2 23 84-106 11-33 (212)
428 2nzj_A GTP-binding protein REM 96.2 0.003 1E-07 47.2 3.3 23 84-106 6-28 (175)
429 2lkc_A Translation initiation 96.2 0.0039 1.3E-07 46.7 3.8 25 82-106 8-32 (178)
430 2hup_A RAS-related protein RAB 96.2 0.014 4.9E-07 44.8 7.1 23 84-106 31-53 (201)
431 3lv8_A DTMP kinase, thymidylat 96.2 0.0028 9.7E-08 50.3 3.1 24 84-107 29-52 (236)
432 3ld9_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 49.1 3.7 24 83-106 22-45 (223)
433 2rcn_A Probable GTPase ENGC; Y 96.2 0.0016 5.5E-08 55.0 1.7 24 83-106 216-239 (358)
434 2pjz_A Hypothetical protein ST 96.2 0.0025 8.5E-08 51.6 2.7 41 154-196 145-186 (263)
435 2zts_A Putative uncharacterize 96.1 0.0043 1.5E-07 49.5 4.1 22 84-105 32-53 (251)
436 2axn_A 6-phosphofructo-2-kinas 96.1 0.0033 1.1E-07 56.2 3.7 23 84-106 37-59 (520)
437 1oxx_K GLCV, glucose, ABC tran 96.1 0.0018 6E-08 54.8 1.8 24 83-106 32-55 (353)
438 1ek0_A Protein (GTP-binding pr 96.1 0.0036 1.2E-07 46.4 3.4 23 84-106 5-27 (170)
439 2wjg_A FEOB, ferrous iron tran 96.1 0.0034 1.2E-07 47.6 3.2 22 84-105 9-30 (188)
440 3tmk_A Thymidylate kinase; pho 96.1 0.0042 1.4E-07 48.6 3.7 24 83-106 6-29 (216)
441 2qm8_A GTPase/ATPase; G protei 96.1 0.004 1.4E-07 52.4 3.9 27 80-106 53-79 (337)
442 2yv5_A YJEQ protein; hydrolase 96.1 0.0055 1.9E-07 50.7 4.6 22 84-106 167-188 (302)
443 1z08_A RAS-related protein RAB 96.1 0.0039 1.3E-07 46.3 3.4 23 84-106 8-30 (170)
444 1moz_A ARL1, ADP-ribosylation 96.1 0.0024 8.2E-08 48.2 2.2 24 81-104 17-40 (183)
445 2ffh_A Protein (FFH); SRP54, s 96.1 0.024 8.1E-07 49.1 8.7 24 84-107 100-123 (425)
446 3q85_A GTP-binding protein REM 96.1 0.0037 1.3E-07 46.4 3.2 21 84-104 4-24 (169)
447 2www_A Methylmalonic aciduria 96.1 0.0087 3E-07 50.6 5.8 24 83-106 75-98 (349)
448 2xgj_A ATP-dependent RNA helic 96.1 0.018 6.2E-07 55.6 8.6 21 84-104 103-123 (1010)
449 1r8s_A ADP-ribosylation factor 96.1 0.0044 1.5E-07 45.7 3.6 24 84-107 2-25 (164)
450 1ky3_A GTP-binding protein YPT 96.0 0.0041 1.4E-07 46.7 3.4 23 84-106 10-32 (182)
451 1c1y_A RAS-related protein RAP 96.0 0.0042 1.4E-07 45.9 3.4 23 84-106 5-27 (167)
452 2bbs_A Cystic fibrosis transme 96.0 0.003 1E-07 51.9 2.7 43 154-196 176-220 (290)
453 1u0l_A Probable GTPase ENGC; p 96.0 0.0038 1.3E-07 51.6 3.4 23 84-106 171-193 (301)
454 2whx_A Serine protease/ntpase/ 96.0 0.0069 2.4E-07 55.3 5.4 23 83-105 187-210 (618)
455 2erx_A GTP-binding protein DI- 96.0 0.0041 1.4E-07 46.2 3.3 22 84-105 5-26 (172)
456 1p5z_B DCK, deoxycytidine kina 96.0 0.0014 4.8E-08 53.1 0.6 23 84-106 26-48 (263)
457 4tmk_A Protein (thymidylate ki 96.0 0.0039 1.3E-07 48.7 3.2 24 84-107 5-28 (213)
458 1r2q_A RAS-related protein RAB 96.0 0.0044 1.5E-07 45.9 3.4 23 84-106 8-30 (170)
459 1tq4_A IIGP1, interferon-induc 96.0 0.01 3.5E-07 51.2 6.0 23 84-106 71-93 (413)
460 4i1u_A Dephospho-COA kinase; s 96.0 0.0049 1.7E-07 47.9 3.6 29 85-120 12-40 (210)
461 3bgw_A DNAB-like replicative h 96.0 0.021 7.2E-07 49.9 8.0 36 84-122 199-234 (444)
462 4a2p_A RIG-I, retinoic acid in 96.0 0.044 1.5E-06 49.1 10.4 24 83-106 23-46 (556)
463 1g16_A RAS-related protein SEC 96.0 0.0038 1.3E-07 46.3 2.9 23 84-106 5-27 (170)
464 2gj8_A MNME, tRNA modification 96.0 0.0036 1.2E-07 47.0 2.7 22 84-105 6-27 (172)
465 1zu4_A FTSY; GTPase, signal re 95.9 0.0048 1.6E-07 51.5 3.6 23 85-107 108-130 (320)
466 2yc2_C IFT27, small RAB-relate 95.9 0.0073 2.5E-07 46.5 4.5 22 84-105 22-43 (208)
467 3q72_A GTP-binding protein RAD 95.9 0.0035 1.2E-07 46.4 2.5 21 84-104 4-24 (166)
468 1upt_A ARL1, ADP-ribosylation 95.9 0.0049 1.7E-07 45.8 3.4 23 84-106 9-31 (171)
469 2obl_A ESCN; ATPase, hydrolase 95.9 0.0047 1.6E-07 52.1 3.5 30 77-106 66-95 (347)
470 3ihw_A Centg3; RAS, centaurin, 95.9 0.005 1.7E-07 46.7 3.4 22 85-106 23-44 (184)
471 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.005 1.7E-07 54.0 3.7 26 81-106 137-162 (460)
472 2hxs_A RAB-26, RAS-related pro 95.9 0.0048 1.6E-07 46.2 3.3 23 84-106 8-30 (178)
473 2dpy_A FLII, flagellum-specifi 95.9 0.0052 1.8E-07 53.6 3.8 30 77-106 152-181 (438)
474 3ice_A Transcription terminati 95.9 0.0075 2.6E-07 51.2 4.6 35 72-106 164-198 (422)
475 3con_A GTPase NRAS; structural 95.9 0.005 1.7E-07 46.8 3.4 23 84-106 23-45 (190)
476 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0051 1.8E-07 46.5 3.4 23 84-106 6-28 (189)
477 1bif_A 6-phosphofructo-2-kinas 95.9 0.0049 1.7E-07 54.4 3.7 24 84-107 41-64 (469)
478 2oil_A CATX-8, RAS-related pro 95.9 0.005 1.7E-07 47.0 3.3 23 84-106 27-49 (193)
479 1z63_A Helicase of the SNF2/RA 95.9 0.047 1.6E-06 48.3 10.1 109 83-195 57-188 (500)
480 1x6v_B Bifunctional 3'-phospho 95.9 0.0048 1.7E-07 56.0 3.6 24 83-106 53-76 (630)
481 1svi_A GTP-binding protein YSX 95.9 0.0045 1.6E-07 47.2 3.0 24 82-105 23-46 (195)
482 3tbk_A RIG-I helicase domain; 95.9 0.038 1.3E-06 49.4 9.5 24 83-106 20-43 (555)
483 3c5c_A RAS-like protein 12; GD 95.8 0.0057 2E-07 46.5 3.4 23 84-106 23-45 (187)
484 2efe_B Small GTP-binding prote 95.8 0.0058 2E-07 45.9 3.4 23 84-106 14-36 (181)
485 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0069 2.4E-07 44.4 3.7 24 84-107 25-48 (149)
486 2fn4_A P23, RAS-related protei 95.8 0.0048 1.6E-07 46.3 2.9 23 84-106 11-33 (181)
487 2y8e_A RAB-protein 6, GH09086P 95.8 0.0048 1.6E-07 46.2 2.9 23 84-106 16-38 (179)
488 1c9k_A COBU, adenosylcobinamid 95.8 0.0048 1.6E-07 46.7 2.7 21 85-105 2-22 (180)
489 2g6b_A RAS-related protein RAB 95.8 0.006 2.1E-07 45.8 3.4 24 84-107 12-35 (180)
490 3pqc_A Probable GTP-binding pr 95.8 0.0052 1.8E-07 46.7 3.1 23 83-105 24-46 (195)
491 3kkq_A RAS-related protein M-R 95.8 0.0061 2.1E-07 46.0 3.4 23 84-106 20-42 (183)
492 1fzq_A ADP-ribosylation factor 95.8 0.0045 1.5E-07 46.8 2.7 22 84-105 18-39 (181)
493 2cjw_A GTP-binding protein GEM 95.8 0.0065 2.2E-07 46.5 3.6 22 84-105 8-29 (192)
494 1m2o_B GTP-binding protein SAR 95.8 0.005 1.7E-07 47.0 2.9 24 83-106 24-47 (190)
495 1yks_A Genome polyprotein [con 95.8 0.021 7.3E-07 49.8 7.2 22 83-104 9-31 (440)
496 2gf9_A RAS-related protein RAB 95.8 0.0063 2.1E-07 46.2 3.4 23 84-106 24-46 (189)
497 3t1o_A Gliding protein MGLA; G 95.8 0.0063 2.1E-07 46.4 3.4 23 84-106 16-38 (198)
498 2iwr_A Centaurin gamma 1; ANK 95.8 0.0045 1.5E-07 46.5 2.5 23 84-106 9-31 (178)
499 2bme_A RAB4A, RAS-related prot 95.8 0.0052 1.8E-07 46.4 2.9 23 84-106 12-34 (186)
500 2atv_A RERG, RAS-like estrogen 95.7 0.0066 2.3E-07 46.5 3.4 23 84-106 30-52 (196)
No 1
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.98 E-value=5.4e-31 Score=223.90 Aligned_cols=216 Identities=29% Similarity=0.433 Sum_probs=176.5
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
....||.++|+|..+++++|++..+..+..++..+..++ ++++||||||||++++++++.+ +..++.+++++.
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~ 84 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDC 84 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTC
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEccccc
Confidence 567799999999999999999999999999999888777 5666779999999999999998 778888988764
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhhcCcceEEEEecCCcccchHhh
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~ 203 (294)
. ...++..+..+..... ..+++.+|+|||+|.++ ...++.|+..++.++....+|+++|....+.+++.
T Consensus 85 ~-~~~i~~~~~~~~~~~~---------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 85 K-IDFVRGPLTNFASAAS---------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp C-HHHHHTHHHHHHHBCC---------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred C-HHHHHHHHHHHHhhcc---------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 3 5555555554433211 12356799999999999 99999999999998889999999999999999999
Q ss_pred ccccEEEecCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhh
Q 022641 204 SRCAKFRFKPLSEEV-------MSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (294)
+||..+.|++|+.++ +...+...+..+++.+++ ++++.+++.++||+|.+++.++.++ ....||.+++..
T Consensus 155 sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~--~~~~i~~~~v~~ 232 (324)
T 3u61_B 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS--SKGVLDAGILSL 232 (324)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--GGTCBCC-----
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--ccCCCCHHHHHH
Confidence 999999999999877 445566667788999988 9999999999999999999999888 456699999988
Q ss_pred hccc
Q 022641 276 VSGY 279 (294)
Q Consensus 276 ~~~~ 279 (294)
++..
T Consensus 233 ~~~~ 236 (324)
T 3u61_B 233 VTND 236 (324)
T ss_dssp ----
T ss_pred HhCC
Confidence 7765
No 2
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.98 E-value=4.8e-30 Score=206.28 Aligned_cols=222 Identities=52% Similarity=0.880 Sum_probs=188.4
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
..||.++|.|..+.+++|++..+..+..++..+..++++|+||+|||||++++.+++.+.+. .....++.+++......
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGI 82 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCH
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccCh
Confidence 45899999999999999999999999999998877789999999999999999999987432 22345666777666665
Q ss_pred hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
..+...+....... .....++.+|+|||++.++...++.|+..++.......+|+++|....+.+++.+|+.
T Consensus 83 ~~~~~~~~~~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 83 DVVRHKIKEFARTA--------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHHHHHHHTSC--------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHHHHHhccc--------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 55554444433221 0112356799999999999999999999999888888899999998889999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhccc
Q 022641 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (294)
.+.++|++.+++..++.+.+...+..+++++++.+++.++||+|.+++.++.++... +.||.++++.+++.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~v~~~~~~ 225 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADTIYQITAT 225 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHHHHHHHHT
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988775 78999999998764
No 3
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=4.4e-31 Score=227.03 Aligned_cols=236 Identities=57% Similarity=0.929 Sum_probs=191.8
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
....||.++|+|..+++++|++..+..+..++..+..++++|+||||||||++++++++.+.++......+..+++++..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 45679999999999999999999999999999988777899999999999999999999975432234567778877766
Q ss_pred chhHHHHHHHHHHhhhcccCc--cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhh
Q 022641 126 GINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~ 203 (294)
+...+...+..+......... .........+.+|+|||++.++...++.|++.+++.+....+|+++|.+..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 666555555444332111000 000011235579999999999999999999999998888889999999999999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC-----CCChhhhhhhcc
Q 022641 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~-----~it~~~v~~~~~ 278 (294)
+||..+.|.|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.+.+. .||.+++..+++
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999999999999999999999989999999999999999999999999999988876532 799999998887
Q ss_pred ccc
Q 022641 279 YPT 281 (294)
Q Consensus 279 ~~~ 281 (294)
...
T Consensus 262 ~~~ 264 (353)
T 1sxj_D 262 VVP 264 (353)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 4
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.2e-30 Score=223.16 Aligned_cols=227 Identities=43% Similarity=0.753 Sum_probs=192.5
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
...||.++|+|..+.+++|++.++..|..++..+..++++|+||||||||++++++++.+.+... ...+..+++++..+
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRG 89 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCS
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCccccc
Confidence 35699999999999999999999999999999998888999999999999999999999865432 23466677776666
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccc
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~ 206 (294)
...++..+..+...... ..+.+.+++|||+|.++...++.|++.++.++....+|+++|.+..+.+++.+||
T Consensus 90 ~~~ir~~i~~~~~~~~~--------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 90 IDVVRNQIKDFASTRQI--------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHTHHHHHHHBCCS--------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHhhccc--------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 66666655544422110 1123679999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC----CCChhhhhhhcccccC
Q 022641 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGYPTG 282 (294)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~----~it~~~v~~~~~~~~~ 282 (294)
..+.|.|++.+++..++.++++.+++.+++++++.+++.++|++|.+++.++.++..... .||.+++..+++...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCH
Confidence 999999999999999999999888999999999999999999999999999987765542 6999999988876543
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.1e-30 Score=222.13 Aligned_cols=227 Identities=50% Similarity=0.840 Sum_probs=188.1
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
....||.++|+|..|++++|++..+..+..++..+..++++|+||||+|||++|+++++.+.+.. ....++.+++++..
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDER 88 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHH
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccC
Confidence 45679999999999999999999999999999998888899999999999999999999974332 12345667766654
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcc
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r 205 (294)
+...++..+..+..... ...+++.+|+|||+|.++...++.|+..++..+....+|+++|.+..+.+++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 89 GINVIREKVKEFARTKP--------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHTTHHHHHHHHHSCC--------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred chHHHHHHHHHHHhhCC--------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 44444443333321110 0013457999999999999999999999999888889999999999999999999
Q ss_pred ccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccC
Q 022641 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTG 282 (294)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~ 282 (294)
|..+.|+|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.. ...||.+++..+++...+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~ 236 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVASRARP 236 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHTTCCCH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCH
Confidence 9999999999999999999999989999999999999999999999999999987754 446899999888776543
No 6
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.97 E-value=1.6e-30 Score=220.49 Aligned_cols=225 Identities=52% Similarity=0.882 Sum_probs=188.4
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
..||.++|+|..+++++|++..+..+..++..+..++++|+||+|||||++|+.+++.+.+... ...++.+++++..+.
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERGI 82 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTCT
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccCh
Confidence 4699999999999999999999999999999888788999999999999999999999854432 235667777765554
Q ss_pred hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
..++..+..+..... ...+++.+|+|||+|.++...++.|++.++..+..+.+|+++|....+.+++.+||.
T Consensus 83 ~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 83 DVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp TTSSHHHHHHHHSCC--------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred HHHHHHHHHHHhcCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 444444443331110 112346799999999999999999999999888889999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccC
Q 022641 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTG 282 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~ 282 (294)
.+.|.|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.. ...||.+++..+++...+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~ 228 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARP 228 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHHHHHHHTTCCCH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCCH
Confidence 99999999999999999999999999999999999999999999999999988765 567999999988876543
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.6e-29 Score=214.65 Aligned_cols=226 Identities=44% Similarity=0.707 Sum_probs=191.2
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
...||.++|+|..+++++|++..+..+..++..+..++++|+||+|+|||++++.+++.+.+.. ....++.+++++..+
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRG 85 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCS
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccC
Confidence 3569999999999999999999999999999998888899999999999999999999975432 123466677777656
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccc
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~ 206 (294)
...++..+..+...... ...+++.+|+|||+|.++...++.|++.++..+....+|++++....+.+++.+||
T Consensus 86 ~~~i~~~~~~~~~~~~~-------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLH-------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHTHHHHHHHBCCC-------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hHHHHHHHHHHHhcccc-------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 66666655554321111 01234679999999999999999999999998888999999999999999999999
Q ss_pred cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhccccc
Q 022641 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281 (294)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~ 281 (294)
..+.|.|++.+++..++..++...++.+++++++.+++.++||+|.+++.++.++.. .+.|+.+++..+++...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~~v~~~~~~~~ 232 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNADNVFKIVDSPH 232 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHHHHHHHHTSCC
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999999999999988754 35699999988887643
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.97 E-value=1.5e-28 Score=212.74 Aligned_cols=224 Identities=25% Similarity=0.372 Sum_probs=185.8
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCccC-------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYK------------- 113 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~------------- 113 (294)
..||.++|+|..+++++|++..+..+..++..+..++ ++|+||+|+|||++++.+++.+.+.....
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999998887655 79999999999999999999986543211
Q ss_pred -----CcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 114 -----SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 114 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
..++.++.........++..+..+... ...+++.+|+|||+|.++...++.|++.+++.+....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~ 152 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSC----------CSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEE
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhc----------cccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEE
Confidence 123444443333334444444332211 11234679999999999999999999999998888999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++++....+.+.+.+||..+.|.|++.+++..++..++...++.+++++++.+++.++||+|.+.++++.+..+.+..|
T Consensus 153 Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 232 (373)
T 1jr3_A 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 (373)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCB
T ss_pred EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999887777789
Q ss_pred Chhhhhhhccccc
Q 022641 269 TSKDLISVSGYPT 281 (294)
Q Consensus 269 t~~~v~~~~~~~~ 281 (294)
|.++|..+++...
T Consensus 233 ~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 233 STQAVSAMLGTLD 245 (373)
T ss_dssp CHHHHHHHTTCCC
T ss_pred cHHHHHHHhCCCC
Confidence 9999998887643
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.97 E-value=1.7e-28 Score=199.88 Aligned_cols=222 Identities=25% Similarity=0.376 Sum_probs=177.7
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCC-cEEEECCCCCCHHHHHHHHHHHhcCCCccC------------
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYK------------ 113 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~~~------------ 113 (294)
...||.++|.|..+.+++|++..+..+..++..+..+ .++|+||+|+|||++++.+++.+.+.....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3568999999999999999999999999999887654 489999999999999999999885432110
Q ss_pred ------CcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 114 ------SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 114 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
..++.++.........+...+..+.. .....++.+|+|||++.++...++.|+..++..+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC----------SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhh----------chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceE
Confidence 01222332222222222222221110 01123467999999999999999999999998778888
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
+|++++....+.+.+.+|+..+.++|++.+++.+++..++...+..+++++++.+++.++|++|.+.++++.+.......
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~ 238 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 238 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCce
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999998777778
Q ss_pred CChhhhhhhcc
Q 022641 268 ITSKDLISVSG 278 (294)
Q Consensus 268 it~~~v~~~~~ 278 (294)
||.++++++++
T Consensus 239 i~~~~v~~~~~ 249 (250)
T 1njg_A 239 VSTQAVSAMLG 249 (250)
T ss_dssp BCHHHHHHHSC
T ss_pred ecHHHHHHHhC
Confidence 99999998875
No 10
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=2.8e-29 Score=215.87 Aligned_cols=221 Identities=34% Similarity=0.584 Sum_probs=170.1
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHH-HcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCcc----------------
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY---------------- 112 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l-~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~---------------- 112 (294)
||+++|+|..|++++|++..+..+..++ ..+..++++|+||+|+||||+++++++.+.++...
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 8999999999999999999999999999 77777789999999999999999999987554321
Q ss_pred -------CCcceeecCCCCcchh--HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc
Q 022641 113 -------KSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (294)
Q Consensus 113 -------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~ 183 (294)
...++.++..+..... .++..+..+.....-...........++.+++|||++.++...++.|++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ---CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 0123334433221111 2333333332211000000000013456799999999999999999999999988
Q ss_pred CcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHhhccCcHHHHHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGAAR 262 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~l~~~~~G~~r~~~~~l~~~~~ 262 (294)
....+|++|+.+..+.+++.+||..+.|+|++.+++..++.+++..+++.++ +++++.+++.++||+|.+++.++.++.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999 999999999999999999999998887
Q ss_pred HhCCCCCh
Q 022641 263 LFGSSITS 270 (294)
Q Consensus 263 ~~~~~it~ 270 (294)
+....||.
T Consensus 243 ~~~~~i~~ 250 (354)
T 1sxj_E 243 NNELALKS 250 (354)
T ss_dssp TTTTEECS
T ss_pred hCCCCcCc
Confidence 65434554
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.96 E-value=1.2e-28 Score=216.43 Aligned_cols=214 Identities=24% Similarity=0.367 Sum_probs=175.5
Q ss_pred chhhhhcCCCcchhhcccHHHH---HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
.||.++++|..+++++|+++.+ ..|...+..+..++++|+||||||||++|+.+++.+ +..++.+++...
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~~- 86 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVTS- 86 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTTC-
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEeccC-
Confidence 5999999999999999999999 889999999988899999999999999999999998 667777776553
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe--cCCcccchHhh
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~--~~~~~~~~~l~ 203 (294)
+...++..+........ ..++.+|||||+|.++...++.|+..+++ ..+.+|++| |....+.+++.
T Consensus 87 ~~~~ir~~~~~a~~~~~----------~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 87 GVKEIREAIERARQNRN----------AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp CHHHHHHHHHHHHHHHH----------TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred CHHHHHHHHHHHHHhhh----------cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 45555555554433321 12356999999999999999999999997 446666666 44467889999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhC------CCCCh
Q 022641 204 SRCAKFRFKPLSEEVMSSRVLHICNE-------EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG------SSITS 270 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~------~~it~ 270 (294)
+||.++.|.+++.+++..++.+.+.. .++.+++++++.|++.++||+|.++++++.++..+. ..||.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~ 234 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKP 234 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCH
Confidence 99999999999999999999999986 456799999999999999999999999999998874 25999
Q ss_pred hhhhhhccccc
Q 022641 271 KDLISVSGYPT 281 (294)
Q Consensus 271 ~~v~~~~~~~~ 281 (294)
+++.+++....
T Consensus 235 e~v~~~l~~~~ 245 (447)
T 3pvs_A 235 ELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHhhhh
Confidence 99999998753
No 12
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=1.3e-27 Score=214.51 Aligned_cols=225 Identities=26% Similarity=0.407 Sum_probs=173.4
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHc-----------------CCCCcEEEECCCCCCHHHHHHHHHHHhcC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------------ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (294)
....+|+++|+|..+++++|++..++.+..|+.. +..+.++|+||||||||++|+++++++
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 4567999999999999999999999999999875 123579999999999999999999998
Q ss_pred CCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccC----CCCCCCCcEEEEEeCCCCCCHHH---HHHHHHHHHh
Q 022641 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR----GGYPCPPYKIIILDEADSMTEDA---QNALRRTMET 181 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lliiDei~~l~~~~---~~~L~~~l~~ 181 (294)
+..++.+++++......+...+........-..... ......++.+|+|||+|.++... .+.|+..++.
T Consensus 102 ----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 102 ----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp ----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred ----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 788899999887766544333222111100000000 00123567899999999997543 4778888876
Q ss_pred hcCcceEEEEecCCc-ccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 182 YSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 182 ~~~~~~ii~~~~~~~-~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
. ...+|++++... ...+.+.+||..+.|++|+.+++..++..++..+++.+++++++.|++.++||+|.++++++.+
T Consensus 178 ~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 178 T--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp C--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred c--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3 344677776543 3446788999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhCCCCChhhhhhhccc
Q 022641 261 ARLFGSSITSKDLISVSGY 279 (294)
Q Consensus 261 ~~~~~~~it~~~v~~~~~~ 279 (294)
+. ....|+.+++..++..
T Consensus 256 ~~-~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 256 ST-TTKTINHENINEISKA 273 (516)
T ss_dssp HH-HSSCCCTTHHHHHHHH
T ss_pred Hh-cCCCCchHHHHHHHHh
Confidence 75 3667999998877663
No 13
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.95 E-value=1.7e-26 Score=197.25 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=169.9
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHc-----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
....|.++|+|..|++++|++..+..+..++.. ...++++|+||||||||++|+++++.+ +..++.+++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~~ 88 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTAA 88 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEEG
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEecc
Confidence 445799999999999999999999999888865 334579999999999999999999998 667777877
Q ss_pred CCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcC-----------------
Q 022641 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK----------------- 184 (294)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~----------------- 184 (294)
............+.. ...+.+|||||++.++...++.|+..+++...
T Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 89 PMIEKSGDLAAILTN----------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp GGCCSHHHHHHHHHT----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred hhccchhHHHHHHHh----------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 665444444333322 12346999999999999999999999987431
Q ss_pred -cceEEEEecCCcccchHhhccc-cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 022641 185 -VTRFFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (294)
Q Consensus 185 -~~~ii~~~~~~~~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~ 262 (294)
.+.+|++||....+.+++.+|| ..+.+++|+.+++..++.+.+...+..+++++++.+++.++|++|.+.++++.+..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2678889999888999999999 58999999999999999999999999999999999999999999999999998765
Q ss_pred Hh----CCCCChhhhhhhccc
Q 022641 263 LF----GSSITSKDLISVSGY 279 (294)
Q Consensus 263 ~~----~~~it~~~v~~~~~~ 279 (294)
.+ ...|+.+++..++..
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHHHH
Confidence 44 445899998877765
No 14
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.94 E-value=2e-25 Score=192.86 Aligned_cols=225 Identities=21% Similarity=0.247 Sum_probs=166.2
Q ss_pred cCCchhhhhcCCCc-chhhcccHHHHHH---HHHHHHcCCCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 46 QSSQPWVEKYRPKQ-VKDVAHQEEVVRV---LTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 46 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
....++.++++|.. |++++|++..+.. +...+..+..+ +++|+||||||||++|+++++.+.+. .+++.+
T Consensus 28 ~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~ 103 (368)
T 3uk6_A 28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAI 103 (368)
T ss_dssp CCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEE
T ss_pred hhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccc
Confidence 34556778899998 9999999988765 45556666554 79999999999999999999998431 123323
Q ss_pred cCCCC----cc---------------------------------------------------hhHHHHHHHHHHhhhccc
Q 022641 120 NASDD----RG---------------------------------------------------INVVRTKIKTFAAVAVGS 144 (294)
Q Consensus 120 ~~~~~----~~---------------------------------------------------~~~~~~~~~~~~~~~~~~ 144 (294)
++... .. ...++..+..........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3uk6_A 104 AGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183 (368)
T ss_dssp EGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhh
Confidence 22110 00 112222222211111000
Q ss_pred CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec------------CCcccchHhhccccEEEec
Q 022641 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFK 212 (294)
Q Consensus 145 ~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~------------~~~~~~~~l~~r~~~i~~~ 212 (294)
+ .....+++|||||+|.++...++.|++.++...... ++++++ .+..+++++.+||..+.|+
T Consensus 184 g-----~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~ 257 (368)
T 3uk6_A 184 G-----KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 257 (368)
T ss_dssp T-----C---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEEC
T ss_pred c-----cccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEec
Confidence 0 001123599999999999999999999998866554 444444 3556889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcc-CcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-GDLRRAITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~-G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
||+.+++..++++.+...+..+++++++.+++.+. |++|.++++++.+...+ ...||.+++..++...
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999998 99999999999988765 4579999999988763
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.94 E-value=3.8e-25 Score=187.85 Aligned_cols=208 Identities=22% Similarity=0.268 Sum_probs=168.8
Q ss_pred hhhcCCCcchhhcccHHHHHHHHHHHHc-----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
.++|+|..|++++|++..+..+..++.. ....+++|+||||||||++|+++++.+ +..++.+++.....
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~------~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIEK 76 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH------TCCEEEECTTTCCS
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccCC
Confidence 4689999999999999999888887753 234579999999999999999999998 56677777766544
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------------------CcceE
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRF 188 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------------------~~~~i 188 (294)
...+...+.. ....+.+|+|||++.++...++.|+..++... ..+.+
T Consensus 77 ~~~l~~~l~~---------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 PGDLAAILAN---------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp HHHHHHHHTT---------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred hHHHHHHHHH---------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 4333322211 01234699999999999999999999998753 24678
Q ss_pred EEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---
Q 022641 189 FFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~--- 264 (294)
|+++|....+.+++.+||. .+.+++|+.+++..++.+.+...+..+++++++.++++++|++|.+.++++.+...+
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 221 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 221 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 8899988888899999994 999999999999999999998888999999999999999999999999999887655
Q ss_pred -CCCCChhhhhhhcccc
Q 022641 265 -GSSITSKDLISVSGYP 280 (294)
Q Consensus 265 -~~~it~~~v~~~~~~~ 280 (294)
...|+.+++..++...
T Consensus 222 ~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 222 GEEVITRERALEALAAL 238 (324)
T ss_dssp SCSCCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 3468988887776543
No 16
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.93 E-value=1.3e-23 Score=178.70 Aligned_cols=217 Identities=19% Similarity=0.249 Sum_probs=163.4
Q ss_pred ccccCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcC-----CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~-----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
+.......|.+.++|..+++++|++..+..+...+..+ ...+++|+||||+||||++++++..+ +..+.
T Consensus 7 ~~~~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l------~~~~~ 80 (334)
T 1in4_A 7 PERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL------QTNIH 80 (334)
T ss_dssp ----------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH------TCCEE
T ss_pred cchHHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 33344457899999999999999999998888777643 33579999999999999999999998 34444
Q ss_pred eecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc--------------
Q 022641 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------- 183 (294)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-------------- 183 (294)
..++........+...... . ....+++|||++.+.+...+.|+..++...
T Consensus 81 ~~sg~~~~~~~~l~~~~~~----~------------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 81 VTSGPVLVKQGDMAAILTS----L------------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp EEETTTCCSHHHHHHHHHH----C------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC-----------
T ss_pred EEechHhcCHHHHHHHHHH----c------------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccc
Confidence 3444333232223222111 0 123599999999999888888887776532
Q ss_pred ----CcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 184 ----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 184 ----~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
..+.++.+++.+..+...+++||. .+.++|++.+++.+++++.+...++.++++++..|++.+.|++|.+.++++
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 124566677888889999999997 689999999999999999998889999999999999999999999999998
Q ss_pred HHHHHh----CCCCChhhhhhhccccc
Q 022641 259 GAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
.+..++ ...||.++++.++....
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 776554 45799999999887754
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.92 E-value=1.5e-24 Score=176.34 Aligned_cols=210 Identities=12% Similarity=0.172 Sum_probs=160.8
Q ss_pred CchhhhhcCC-Ccchhhcc---cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 48 SQPWVEKYRP-KQVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~g---~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..|+..++.| ..|+++++ ++..+..+..++..+..++++|+||||||||++++.+++.+... +..+..+++..
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~ 90 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGI 90 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHH
Confidence 4577778887 78888886 36788888888887667789999999999999999999988432 23444444433
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHHhhcCcc--eEEEEecCCc---
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYSKVT--RFFFICNYIS--- 196 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~--~~~L~~~l~~~~~~~--~ii~~~~~~~--- 196 (294)
.... . ..... ...+..+|+|||++.+.... ++.|+..++...... .+|++++...
T Consensus 91 ~~~~--~----~~~~~------------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 91 HASI--S----TALLE------------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGGS--C----GGGGT------------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHH--H----HHHHH------------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 2110 0 00000 01234599999999997544 777888877654332 4777776443
Q ss_pred -ccchHhhccc---cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC
Q 022641 197 -RIIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSIT 269 (294)
Q Consensus 197 -~~~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it 269 (294)
...+.+.+|| ..+.+++|+.+++..++...+...+..+++++++.+++.++||+|.+.+.++.+..++ +..||
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It 232 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLT 232 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3458899999 7999999999999999999999999999999999999999999999999999888765 66799
Q ss_pred hhhhhhhcc
Q 022641 270 SKDLISVSG 278 (294)
Q Consensus 270 ~~~v~~~~~ 278 (294)
.++++.++.
T Consensus 233 ~~~v~~~l~ 241 (242)
T 3bos_A 233 IPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998875
No 18
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.92 E-value=7.1e-24 Score=180.38 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=149.7
Q ss_pred cccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCccC------------------CcceeecCC--
Q 022641 64 AHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYK------------------SRVLELNAS-- 122 (294)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~------------------~~~~~~~~~-- 122 (294)
.-++...+.+...+..++.++ ++|+||+|+|||++|+.+++.+.|..... ..+..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 345777888889998888777 99999999999999999999998764321 345555553
Q ss_pred -CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchH
Q 022641 123 -DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (294)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~ 201 (294)
...+.+.++..+..+...+ ..+++.++||||+|.++...++.|++.+++++..+.+|++|+.+..++++
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~----------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHA----------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCC----------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred CCCCCHHHHHHHHHHHhhcc----------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 3455666666554433221 12456799999999999999999999999988899999999999999999
Q ss_pred hhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
+++||..+.|+|++.+++..++...+ .++++++..+++.++|++|.++++++...
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDN 209 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHH
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccch
Confidence 99999999999999999999997654 67999999999999999999999887544
No 19
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.7e-24 Score=180.25 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=150.0
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..+|+++.|.+.+++.|.+.+.. ..+..+||+||||||||++|+++|.++ +.+++.++++.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~ 217 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAE 217 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHH
Confidence 45799999999999998877632 233469999999999999999999999 88888888776
Q ss_pred Ccc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhc
Q 022641 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS 183 (294)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~ 183 (294)
..+ ...++..+...... .+.+|||||+|.+.. .....|+..|+...
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~--------------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREH--------------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHT--------------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred hhccccchHHHHHHHHHHHHHHh--------------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 543 23344444433322 235999999998732 23556777777543
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l 257 (294)
..+.+|++||.+..+++++++ ||. .|.+++|+.+++.++++.+++...+. ++-.+..|++.+.| +...+.+++
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~ 362 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVC 362 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHH
Confidence 456788999999999999998 887 89999999999999998887654332 22247888888765 334444555
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
..|+..+ ...||.+|+..++..+..
T Consensus 363 ~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 363 TEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 5555444 456999999998876543
No 20
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=4.4e-23 Score=182.51 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=111.2
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec---------C----CcccchHhhccccEEEecCCCHHHHHHHH
Q 022641 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN---------Y----ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 157 ~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~---------~----~~~~~~~l~~r~~~i~~~~~~~~~~~~~l 223 (294)
.|+||||+|.|+...++.|++.+++++.. .+|+++| . +..+++.+++||..+.|+|++.+++.+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 59999999999999999999999998877 5666773 3 56788999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccC
Q 022641 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
++++..++..++++++..++..+ .|++|.++++++.+...+ ...|+.++|..+++.+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 99999999999999999999999 999999999999885554 457999999999877543
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=3.5e-23 Score=173.59 Aligned_cols=214 Identities=22% Similarity=0.230 Sum_probs=161.7
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
|.+++.+..|++++|++..++.+..++.. ....+++|+||||||||++|+++++.+ +..++.
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~~ 84 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFLN 84 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEEE
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEE
Confidence 55667788999999999999999888743 124569999999999999999999998 667777
Q ss_pred ecCCCCcch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh
Q 022641 119 LNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET 181 (294)
Q Consensus 119 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~ 181 (294)
++++..... ...+..+..... ..+.+|+|||++.+. ...++.|+..++.
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARH--------------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHH--------------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHH--------------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc
Confidence 776654321 122222222111 124699999998873 3456667777776
Q ss_pred hc-----CcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHH-
Q 022641 182 YS-----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI- 254 (294)
Q Consensus 182 ~~-----~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~- 254 (294)
.. ..+.+|++||.+..+++++.+||. .+.+++|+.++...+++.++...+..++++.++.+++.+.|..+..+
T Consensus 151 ~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 151 LPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp CC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred ccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 54 346788889999999999999996 88999999999999999999888888999999999999999776544
Q ss_pred HHHHHHHHHh----------------CCCCChhhhhhhcccccCCC
Q 022641 255 TYLQGAARLF----------------GSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 255 ~~l~~~~~~~----------------~~~it~~~v~~~~~~~~~~~ 284 (294)
.+++.++..+ ...|+.+++..++....+..
T Consensus 231 ~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 231 ALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp HHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 5555544332 13699999999998877654
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.91 E-value=2.2e-23 Score=176.58 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=145.0
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHH----------cC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLE----------TA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~----------~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
.|..++.+..|++++|++.+++.|..++. .+ ...+++|+||||||||++|+++++++ +..++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~ 80 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 80 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCEE
Confidence 45567778889999999999999988872 11 22469999999999999999999998 67777
Q ss_pred eecCCCCcc--hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhh--
Q 022641 118 ELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY-- 182 (294)
Q Consensus 118 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~~~~L~~~l~~~-- 182 (294)
.++++...+ .......+......... ..+.+|+|||+|.+.. ..++.|+..++..
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMARE----------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHHH----------TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHHh----------cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 777644211 11112222222111111 1236999999998843 3467777777643
Q ss_pred -cCcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHHHH
Q 022641 183 -SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQG 259 (294)
Q Consensus 183 -~~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l~~ 259 (294)
...+.+|++||.+..+++++.+||. .+.+++|+.+++..+++.++...+..+++..+..|++.+.| +.+.+.++++.
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456778889999999999999997 79999999999999999999887778899999999999877 45555555554
Q ss_pred HH
Q 022641 260 AA 261 (294)
Q Consensus 260 ~~ 261 (294)
++
T Consensus 231 a~ 232 (322)
T 3eie_A 231 AL 232 (322)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.91 E-value=5.7e-23 Score=178.47 Aligned_cols=218 Identities=19% Similarity=0.203 Sum_probs=161.8
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
.|.+++.+..|++++|++.+++.|..++.. ....+++|+||||||||++|+++++++ +..++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~~ 177 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATFF 177 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcEE
Confidence 577888999999999999999999888732 223579999999999999999999998 77888
Q ss_pred eecCCCCcchhH--HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHhhc-
Q 022641 118 ELNASDDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETYS- 183 (294)
Q Consensus 118 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l-----------~~~~~~~L~~~l~~~~- 183 (294)
.+++........ ....+......... ..+.+|||||+|.+ ....++.|+..++...
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~----------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARE----------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHH----------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHh----------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 888876543211 11111111111110 12359999999988 2345566777776543
Q ss_pred ---CcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHH-HHH
Q 022641 184 ---KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT-YLQ 258 (294)
Q Consensus 184 ---~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~-~l~ 258 (294)
..+.+|++||.+..+.+++.+||. .+.+++|+.+++..++..++...+..++++.+..|++.+.|..+..+. ++.
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788899999999999999997 799999999999999999998888999999999999999997765554 444
Q ss_pred HHHHHh----------------CCCCChhhhhhhcccccCC
Q 022641 259 GAARLF----------------GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 259 ~~~~~~----------------~~~it~~~v~~~~~~~~~~ 283 (294)
.++... ...|+.+++..++....+.
T Consensus 328 ~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 328 DAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 443322 1358888998888766554
No 24
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.91 E-value=3.7e-23 Score=177.15 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=139.3
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
.+..++.+..|++++|++.+++.|..++.. ....+++|+||||||||++|+++++++ +.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~~ 113 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 113 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 345567788999999999999999887731 122469999999999999999999998 66777
Q ss_pred eecCCCCc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHH
Q 022641 118 ELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTME 180 (294)
Q Consensus 118 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~~~~L~~~l~ 180 (294)
.+++.+.. ....++..+..... ..+.+|||||+|.+.. ...+.|+..++
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARE--------------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHH--------------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 77654321 12222222222111 1246999999999863 24667777777
Q ss_pred hh---cCcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHH
Q 022641 181 TY---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (294)
Q Consensus 181 ~~---~~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~ 255 (294)
.. ...+.+|++||.+..+++++++||. .+.+++|+.+++..+++.++...+..+++..+..|++.+.| +.+.+.+
T Consensus 180 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 180 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp HCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 53 3467788899999999999999996 89999999999999999999877777899999999999988 4555555
Q ss_pred HHHHHH
Q 022641 256 YLQGAA 261 (294)
Q Consensus 256 ~l~~~~ 261 (294)
+++.++
T Consensus 260 l~~~A~ 265 (355)
T 2qp9_X 260 VVKDAL 265 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 25
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.7e-23 Score=176.69 Aligned_cols=209 Identities=21% Similarity=0.216 Sum_probs=150.8
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
-+.+|+++.|.+.+++.|.+.+.. ..+.+++|+||||||||++|+++|.++ +.+++.++++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s 249 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAP 249 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehh
Confidence 345799999999999988876421 233469999999999999999999999 8888888876
Q ss_pred CCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------H---HHHHHHHHHHHhh
Q 022641 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMETY 182 (294)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~---~~~~~L~~~l~~~ 182 (294)
+..+ ...++..+....... +.+|+|||+|.+. . .....|+..++..
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~a--------------P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKA--------------PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHC--------------SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hhhhcccchHHHHHHHHHHHHHhcC--------------CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 6433 223444443333322 3599999999761 1 1344567777654
Q ss_pred c--CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHH
Q 022641 183 S--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITY 256 (294)
Q Consensus 183 ~--~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~ 256 (294)
. ..+.+|++||.+..+++++++ ||. .|.|++|+.+++.++++.+++...+. ++-.++.|++.+.| +...+.++
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHH
Confidence 4 356788899999999999987 887 89999999999999999888764432 11237778887765 33444444
Q ss_pred HHHHHHHh----CCCCChhhhhhhcccccCCCC
Q 022641 257 LQGAARLF----GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~~~~~~~~ 285 (294)
+..|+..+ ...|+.+|+..++..+.+...
T Consensus 395 ~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 395 TVEAGMIALRNGQSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCC
Confidence 44444433 557999999999988877644
No 26
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-22 Score=173.02 Aligned_cols=207 Identities=19% Similarity=0.220 Sum_probs=148.8
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
+--..+|+++.|.+.+++.|.+.+.. ..+..+||+||||||||++|+++|.++ +.+++.++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEE
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEEE
Confidence 33456899999999999988877632 223469999999999999999999999 88888888
Q ss_pred CCCCcch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHH
Q 022641 121 ASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTME 180 (294)
Q Consensus 121 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~ 180 (294)
+++..+. ..++..+...... .+.||+|||+|.+.. .....|+..++
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~--------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGEN--------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHT--------------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhc--------------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 7654332 2333333333222 235999999998721 23455666666
Q ss_pred hhc--CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHhhccC-cHHHH
Q 022641 181 TYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRA 253 (294)
Q Consensus 181 ~~~--~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~l~~~~~G-~~r~~ 253 (294)
... ..+.+|++||.+..+++++++ ||. .|.|+.|+.+++.++++.+++.. .++++ .++.|++.+.| +...+
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~--~l~~dvdl~~LA~~T~GfSGADI 392 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM--NLSEDVNLETLVTTKDDLSGADI 392 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS--CBCSCCCHHHHHHHCCSCCHHHH
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC--CCCCcCCHHHHHHhCCCCCHHHH
Confidence 533 456789999999999999998 887 79999999999999998888653 33333 37788887655 33344
Q ss_pred HHHHHHHHHHh----CCCCChhhhhhhcccccC
Q 022641 254 ITYLQGAARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 254 ~~~l~~~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
.+++..|+..+ ...|+.+|+..++..+.+
T Consensus 393 ~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 393 QAMCTEAGLLALRERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhC
Confidence 44455554444 456999999998876543
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.90 E-value=4e-22 Score=171.05 Aligned_cols=218 Identities=18% Similarity=0.166 Sum_probs=159.7
Q ss_pred hhhcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
.+++.+..|++++|++..++.|.+++.. ....+++|+||||||||++|+++++.+ +..++.+
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i 148 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFSI 148 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEE
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEEE
Confidence 3456788999999999999999888742 234569999999999999999999998 6777777
Q ss_pred cCCCCcch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhh----
Q 022641 120 NASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (294)
Q Consensus 120 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~---- 182 (294)
++++.... ......+........ ...+.+|||||+|.+. ...++.|+..++..
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~----------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVAR----------CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHH----------HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred ehHHhhccccchHHHHHHHHHHHHH----------hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 77654321 111112222111111 0124699999998773 23456677777642
Q ss_pred cCcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGA 260 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l~~~ 260 (294)
...+.+|++||.+..+.+++.+||. .+.+++|+.+++..++..++...+..++++.++.+++.+.| ..+.+..+++.+
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3466788899999999999999998 78999999999999999999888888999999999999888 444455555554
Q ss_pred HHHh----------------CCCCChhhhhhhcccccCCCC
Q 022641 261 ARLF----------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 261 ~~~~----------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
+... ...|+.+++..++....+...
T Consensus 299 ~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 299 SLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp HTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCC
Confidence 3222 246999999999888776543
No 28
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.2e-22 Score=173.28 Aligned_cols=206 Identities=18% Similarity=0.159 Sum_probs=148.4
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..+|+++.|.+..++.|.+.+.. ..+..+||+||||||||++|+++|.++ +.+++.+++++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~ 250 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASG 250 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhh
Confidence 34789999999999988887632 233469999999999999999999999 88888888776
Q ss_pred Ccch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhc
Q 022641 124 DRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS 183 (294)
Q Consensus 124 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~ 183 (294)
..+. ..++..+...... .+.||||||+|.+.. .....|+..++...
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~--------------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEH--------------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHS--------------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred hccccchHHHHHHHHHHHHHHhc--------------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 5432 2233333322221 245999999998731 23556777777544
Q ss_pred --CcceEEEEecCCcccchHhhcc--cc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~r--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l 257 (294)
..+.+|++||.+..++++++++ |. .|.|+.|+.+++..+++.+++..... ++-.+..+++.|.| +...+.+++
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHH
Confidence 3567899999999999999874 76 79999999999999999888654332 22347888888765 334444445
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
..|+..+ ...|+.+|+..++..+.+.
T Consensus 396 ~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 396 TEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 5544443 4569999999988776543
No 29
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=2e-22 Score=168.41 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=140.6
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc-CCCccCCcceeecCCC-CcchhHHHHHHHHHHhhhc
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAV 142 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 142 (294)
|+++++..|...+..++.++++|+||||+|||+++.++++... |.. ....+..+++++ ..+.+.++..+..+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 6788899999999988877799999999999999999998641 211 245677787764 5677777776665543221
Q ss_pred ccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHH
Q 022641 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (294)
Q Consensus 143 ~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 222 (294)
.+++.++||||+|.++...++.|++.+++++..+.+|++|+.+..+.+++++| .+.|.|++.+++..+
T Consensus 80 ----------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 80 ----------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDL 147 (305)
T ss_dssp ----------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHH
T ss_pred ----------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHH
Confidence 23467999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHH
Q 022641 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (294)
Q Consensus 223 l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~ 259 (294)
+.+.+ + ++++++ ..+.||+|.++++++.
T Consensus 148 L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 148 VKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp HHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred HHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 98877 2 566665 5579999999988863
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.7e-21 Score=163.39 Aligned_cols=188 Identities=18% Similarity=0.158 Sum_probs=139.1
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
..+..|+++.|.+.+++.|.+.+.. ....+++|+||||||||++|+++++++. ...++.++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhH
Confidence 3456899999999999999887631 1224699999999999999999999872 3455666655
Q ss_pred CCc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhh---
Q 022641 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--- 182 (294)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~--- 182 (294)
+.. ....++..+..... ..+.+|+|||+|.+. ....+.|+..++..
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHH--------------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHHh--------------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 432 22333333332221 124599999999882 23456677777653
Q ss_pred cCcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc-HHHHHHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGA 260 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~-~r~~~~~l~~~ 260 (294)
...+.+|++||.+..+++++++||. .+.+++|+.+++..+++.++...+..+++..+..|++.+.|. .+.+..+++.+
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3557788889999999999999996 899999999999999999988777778999999999998874 45555555554
Q ss_pred H
Q 022641 261 A 261 (294)
Q Consensus 261 ~ 261 (294)
+
T Consensus 227 ~ 227 (322)
T 1xwi_A 227 L 227 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.89 E-value=4.2e-22 Score=163.49 Aligned_cols=209 Identities=18% Similarity=0.132 Sum_probs=153.0
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
|.+++.+..|++++|.+..++.+...+.. ....+++|+||||||||++|++++..+ +.+++.
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~ 75 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFT 75 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEEE
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCCEEE
Confidence 66778889999999999999877665432 123469999999999999999999998 556677
Q ss_pred ecCCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHH
Q 022641 119 LNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRT 178 (294)
Q Consensus 119 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~ 178 (294)
+++.+... ...+...+..... ..+.+++|||+|.+.. ...+.++..
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHHT--------------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHHH--------------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHH
Confidence 77654322 2223333332211 1235999999976532 345556666
Q ss_pred HHhh--cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHhhccC-cHH
Q 022641 179 METY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQG-DLR 251 (294)
Q Consensus 179 l~~~--~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~G-~~r 251 (294)
++.. .....+|++||.+..+++++.+ ||. .+.+++|+.+++.++++.+++.. .+++ ..+..++..+.| ++|
T Consensus 142 l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 142 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp HHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHH
T ss_pred hhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHcCCCCHH
Confidence 6643 3456788889999888899887 776 78999999999999998887543 3433 336778889999 999
Q ss_pred HHHHHHHHHHHHh----CCCCChhhhhhhccccc
Q 022641 252 RAITYLQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 252 ~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
.+.+++..++..+ ...|+.+++..++....
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 9999999887766 35799999999887653
No 32
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.6e-22 Score=171.20 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=145.4
Q ss_pred CcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
.+|+++.|.+.+++.|.+.+.. ..++.+||+||||||||++|+++|.++ +.+++.++++..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSEL 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHh
Confidence 5789999999999998876532 234569999999999999999999999 788888887654
Q ss_pred cc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhc-
Q 022641 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (294)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~- 183 (294)
.+ ...++..+...... .+.+|||||+|.+.. .....++..++...
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~--------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTK--------------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHT--------------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred hcccCCHHHHHHHHHHHHHHhc--------------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 33 22344444333322 235999999998731 13445566665433
Q ss_pred -CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHhhccC-cHHHHHHHH
Q 022641 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 184 -~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~l~~~~~G-~~r~~~~~l 257 (294)
..+.+|++||.+..+++++++ ||. .|.|+.|+.+++.++|+.+++... ++.+ .++.|++.|.| +...+.+++
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 356788899999999999988 998 899999999999999988876533 3322 36778887765 233333444
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
..|+..+ ...|+.+++..++..+..
T Consensus 424 ~eAa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 424 TEAGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 4444333 567999999988877543
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.89 E-value=2.5e-21 Score=159.31 Aligned_cols=204 Identities=18% Similarity=0.122 Sum_probs=140.8
Q ss_pred CcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
..|++++|++..+..+.+++.. ....+++|+||||||||++|+++++++ +.+++.+++.+..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEFV 76 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTTS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHHH
Confidence 4688999999999888776531 233469999999999999999999998 6677777766532
Q ss_pred c------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH------------HHH---HHHHHHHHh--h
Q 022641 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQ---NALRRTMET--Y 182 (294)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~------------~~~---~~L~~~l~~--~ 182 (294)
. ...+...+..... ..+.+|+|||+|.+.. ... ..|+..++. .
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARA--------------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHH--------------TCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred hhccChhHHHHHHHHHHHHh--------------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 2 1112222222111 1235999999999832 222 334444443 2
Q ss_pred cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhccCc-HHHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD-LRRAITYL 257 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~~G~-~r~~~~~l 257 (294)
.....+|+++|.+..+++++.+ ||. .+.+++|+.+++.++++.++...+...+.+. +..++..+.|. .+.+.+++
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 3456788889999888899988 996 8999999999999999999998888777664 57888888764 45666777
Q ss_pred HHHHHHh----CCCCChhhhhhhccccc
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
+.++..+ ...|+.+++..++....
T Consensus 223 ~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 250 (262)
T 2qz4_A 223 NEAALHAAREGHTSVHTLNFEYAVERVL 250 (262)
T ss_dssp HHHHTC--------CCBCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 7666554 34699999998887643
No 34
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.89 E-value=2.9e-21 Score=167.81 Aligned_cols=230 Identities=18% Similarity=0.213 Sum_probs=166.6
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHc----CCCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
...+|..+|.| ++++|++..+..+..++.. .... +++|+||+|+|||++++.+++.+.+.. +..++.++
T Consensus 6 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~ 80 (389)
T 1fnn_A 6 DDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYIN 80 (389)
T ss_dssp CGGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEE
T ss_pred CHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEe
Confidence 44567777877 6789999999888888765 3333 799999999999999999999984332 34567777
Q ss_pred CCCCcchhH-HHHHHHHHHhhhcccCccCC---------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc----Ccc
Q 022641 121 ASDDRGINV-VRTKIKTFAAVAVGSGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----KVT 186 (294)
Q Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~----~~~ 186 (294)
+........ +......+.......+.... .....++.+|+|||++.++...+..|+.+++... ...
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~ 160 (389)
T 1fnn_A 81 GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRI 160 (389)
T ss_dssp TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCE
T ss_pred CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCE
Confidence 665443322 22222211000000000000 0001345699999999999988999998887644 377
Q ss_pred eEEEEecCC---cccchHhhcccc--EEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHhhc---------cCcH
Q 022641 187 RFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---------QGDL 250 (294)
Q Consensus 187 ~ii~~~~~~---~~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~l~~~~---------~G~~ 250 (294)
.+|++++.. ..+.+.+.+||. .+.|+|++.+++..++...+... ...+++++++.+++.+ +||+
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~ 240 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDA 240 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCH
T ss_pred EEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcH
Confidence 788888876 457788888887 79999999999999999988752 2468999999999998 8999
Q ss_pred HHHHHHHHHHHHHh----CCCCChhhhhhhccccc
Q 022641 251 RRAITYLQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 251 r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
|.++++++.+...+ ...|+.+++..++....
T Consensus 241 r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 241 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 99999999887765 35699999988776654
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=6.8e-22 Score=164.76 Aligned_cols=211 Identities=17% Similarity=0.168 Sum_probs=147.1
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
..+..|++++|++..++.+..++.. ....+++|+||||||||++|+++++.+ +..++.+++
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~ 84 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVG 84 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeh
Confidence 3356789999999999999887743 344569999999999999999999998 667777665
Q ss_pred CCCcc--hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHhh-----c
Q 022641 122 SDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY-----S 183 (294)
Q Consensus 122 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l-----------~~~~~~~L~~~l~~~-----~ 183 (294)
..... .......+......... ..+.+|+|||+|.+ ....+..|..+++.. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKE----------KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHH----------TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHhccchHHHHHHHHHHHHHH----------cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 44322 11111222221111111 12359999999987 334555666555532 3
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQG 259 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l~~ 259 (294)
....+|++||.+..+++++.+ ||. .+.+++|+.+++.++++..+...+.. ++..+..++..+.| +++.+..++..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~ 233 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTE 233 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 467788899999999999998 886 89999999999999999887654433 23346777777766 45555555555
Q ss_pred HHHHh----CCCCChhhhhhhcccccC
Q 022641 260 AARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 260 ~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
+...+ ...|+.+++..++.....
T Consensus 234 a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 234 AGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 55444 456999999999887543
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=6.3e-22 Score=166.86 Aligned_cols=202 Identities=21% Similarity=0.224 Sum_probs=148.1
Q ss_pred hhcccHHHHHHHHHHHH---------------cCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCc-cCCcceeecCCCCc
Q 022641 62 DVAHQEEVVRVLTNTLE---------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDR 125 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~ 125 (294)
+++|++..++.+..++. .....+++|+||||||||++|+++++.+.+... ...+++.+++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 68999999988877654 233346999999999999999999999843221 23356666654432
Q ss_pred ch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 126 GI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l---------~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.. ......+....... .+++|+|||+|.+ +...++.|++.++.......+|+++|.
T Consensus 112 ~~~~g~~~~~~~~~~~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred hhcccccHHHHHHHHHhc-------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 21 11111111111111 1249999999977 778899999999998888888888875
Q ss_pred Cc-----ccchHhhccc-cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh--------ccCcHHHHHHHHHHH
Q 022641 195 IS-----RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQGA 260 (294)
Q Consensus 195 ~~-----~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~--------~~G~~r~~~~~l~~~ 260 (294)
.. .+.+++.+|| ..+.|++|+.+++..+++.++...+..+++++++.+++. +.||+|.+.++++.+
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 42 2468999999 599999999999999999999999999999999999886 459999999999988
Q ss_pred HHHh--------CCCCChhhhhhh
Q 022641 261 ARLF--------GSSITSKDLISV 276 (294)
Q Consensus 261 ~~~~--------~~~it~~~v~~~ 276 (294)
.... ...++.+++..+
T Consensus 259 ~~~~~~r~~~~~~~~~~~~~l~~i 282 (309)
T 3syl_A 259 RLRQANRLFTASSGPLDARALSTI 282 (309)
T ss_dssp HHHHHHHHHHC---CEEHHHHHEE
T ss_pred HHHHHHHHHhccCCCCCHHHHhhc
Confidence 7422 244555555443
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.6e-21 Score=168.76 Aligned_cols=201 Identities=21% Similarity=0.209 Sum_probs=145.5
Q ss_pred CcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
..|+++.|.+.+++.|.+.+.. ..++.++|+||||||||++|+++|.++ +.+++.+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEF 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchh
Confidence 4789999999999988877632 233459999999999999999999999 888888887654
Q ss_pred cc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhhc-
Q 022641 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS- 183 (294)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--------------~~~~~~L~~~l~~~~- 183 (294)
.+ ...++..+...... .+.+|+|||+|.+. ....+.|+..++...
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~--------------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN--------------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT--------------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred hccccchhHHHHHHHHHHHHHc--------------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 33 23344444433322 23599999998651 124667778887643
Q ss_pred -CcceEEEEecCCcccchHhhc--ccc-EEEec-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHH
Q 022641 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFK-PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 184 -~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l 257 (294)
..+.+|++||.+..+++++++ ||. .|.|+ +|+.+++..+++.+++...+. ++..++.|++.|.| +...+.+++
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~ 387 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIM 387 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHH
Confidence 356788999999999999997 887 78895 788999999998888654332 22347888887765 334444555
Q ss_pred HHHHHHh----CCCCChhhhhhhccc
Q 022641 258 QGAARLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~ 279 (294)
..|+..+ ...|+.+++..++..
T Consensus 388 ~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 388 QEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 5555444 456999999998865
No 38
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.88 E-value=8e-22 Score=171.18 Aligned_cols=230 Identities=20% Similarity=0.217 Sum_probs=162.5
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHc----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCC---ccCCcceeec
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELN 120 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~~~ 120 (294)
..+|...+.| ++++|++..+..+..++.. +..++++|+||||||||++++.+++.+.... ..+..++.++
T Consensus 9 ~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 9 RWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp HHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3455556666 7789999999999998843 3456799999999999999999999873210 1145667777
Q ss_pred CCCCcchhHHH-HHHHHHHhhhcccCccC---------CCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhh-----c
Q 022641 121 ASDDRGINVVR-TKIKTFAAVAVGSGQRR---------GGYPCPPYKIIILDEADSMTED--AQNALRRTMETY-----S 183 (294)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~lliiDei~~l~~~--~~~~L~~~l~~~-----~ 183 (294)
+....+...+. .....+.......+... ......++.+|+|||+|.+... .++.|..+++.. .
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~ 165 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDR 165 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC---
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCC
Confidence 76544433221 11111100000000000 0001234669999999999765 677777777644 4
Q ss_pred CcceEEEEecCC---cccchHhhccc--cEEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHhhcc---CcHHHH
Q 022641 184 KVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRRA 253 (294)
Q Consensus 184 ~~~~ii~~~~~~---~~~~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~l~~~~~---G~~r~~ 253 (294)
....+|+++|.. ..+.+.+.+|+ ..+.|+|++.+++..++...+.. .+..+++++++.+++.++ ||+|.+
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHH
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHH
Confidence 566788888876 56788999999 58999999999999999999876 456789999999999988 999999
Q ss_pred HHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 254 ITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 254 ~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
+++++.+...+ ...|+.+++..++...
T Consensus 246 ~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 246 LDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999888765 3569999998887654
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.87 E-value=3.5e-21 Score=162.28 Aligned_cols=207 Identities=17% Similarity=0.235 Sum_probs=148.0
Q ss_pred hhhcccHHHHHHHHHHHHc--------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 61 KDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
+.++|++.++..+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEcchhccc
Confidence 4688999999988887754 234579999999999999999999998 55666666554321
Q ss_pred --------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHH------------HHHHHHHHHhh----
Q 022641 127 --------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA------------QNALRRTMETY---- 182 (294)
Q Consensus 127 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~------------~~~L~~~l~~~---- 182 (294)
...+...+........ ....+.+|+|||+|.++... ++.|++.++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 159 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAGGAID---------AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST 159 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTTTCHH---------HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCccCccHHHHHHHHHHHhhHHHh---------hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec
Confidence 1112222221100000 00113599999999997543 78899999863
Q ss_pred ------cCcceEEEEe----cCCcccchHhhcccc-EEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHH
Q 022641 183 ------SKVTRFFFIC----NYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEA 238 (294)
Q Consensus 183 ------~~~~~ii~~~----~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~ 238 (294)
.....+|+++ +.+..+.+++.+||. .+.|+||+.+++..++++ .+...+. .+++++
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (310)
T 1ofh_A 160 KHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDA 239 (310)
T ss_dssp TTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHH
T ss_pred ccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHH
Confidence 1355666664 355678899999997 699999999999999982 2333453 589999
Q ss_pred HHHHHhhc--------cCcHHHHHHHHHHHHHH-----h--CC---CCChhhhhhhcccccC
Q 022641 239 LSTLSSIS--------QGDLRRAITYLQGAARL-----F--GS---SITSKDLISVSGYPTG 282 (294)
Q Consensus 239 l~~l~~~~--------~G~~r~~~~~l~~~~~~-----~--~~---~it~~~v~~~~~~~~~ 282 (294)
++.|++.+ .||+|.+.++++.+... . .. .||.+++.+++.....
T Consensus 240 ~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 240 VKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred HHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 99999987 79999999999986522 1 11 3999999999987543
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.87 E-value=1.5e-21 Score=171.56 Aligned_cols=213 Identities=15% Similarity=0.147 Sum_probs=152.4
Q ss_pred cchhhc-c--cHHHHHHHHHHHHcCC-CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH
Q 022641 59 QVKDVA-H--QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (294)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (294)
+|++++ | +......+..+..... .++++|+||||+||||+++++++.+... ..+..++.+++... .....
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~-----~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKF-----LNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHH-----HHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHH-----HHHHH
Confidence 677776 4 4555566666666544 5679999999999999999999987321 11334455544331 11111
Q ss_pred HHHHhhhcccCccCCCCCCC-CcEEEEEeCCCCCCH--HHHHHHHHHHHhhcC-cceEEEEecCC-cc---cchHhhccc
Q 022641 135 KTFAAVAVGSGQRRGGYPCP-PYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI-SR---IIEPLASRC 206 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~~lliiDei~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~~~~-~~---~~~~l~~r~ 206 (294)
..+......... .... +.++|+|||++.+.. ..++.|+..++.... ...+|++++.+ .. +.+++.+||
T Consensus 177 ~~~~~~~~~~~~----~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~ 252 (440)
T 2z4s_A 177 DSMKEGKLNEFR----EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF 252 (440)
T ss_dssp HHHHTTCHHHHH----HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH
T ss_pred HHHHcccHHHHH----HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc
Confidence 111100000000 0001 346999999999875 677888888876443 45567777653 32 678999999
Q ss_pred ---cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcccc
Q 022641 207 ---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGYP 280 (294)
Q Consensus 207 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~ 280 (294)
..+.+.+|+.+++..++.+.+...++.+++++++.|+..++||+|.+.++++.+..++ +..||.+++..++...
T Consensus 253 ~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 253 QMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999887766 5679999999999876
Q ss_pred c
Q 022641 281 T 281 (294)
Q Consensus 281 ~ 281 (294)
.
T Consensus 333 ~ 333 (440)
T 2z4s_A 333 I 333 (440)
T ss_dssp T
T ss_pred h
Confidence 5
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.87 E-value=1.8e-21 Score=165.67 Aligned_cols=221 Identities=17% Similarity=0.139 Sum_probs=160.7
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
.+|.+++.|..+.+++|++..+..+...+..+. +++|+||||||||++|+++++.+ +..+..+++.......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~------~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM------DLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT------TCCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh------CCCeEEEecCCCCChh
Confidence 479999999999999999999999988887754 79999999999999999999988 5556666654332222
Q ss_pred HHHHHHHHHHhhhccc--CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-----------cCcceEEEEecCC
Q 022641 129 VVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~~~~ 195 (294)
.+ +.......... ....+.. ..++|+|||++.++...++.|++.+++. +..+.++.++|..
T Consensus 87 ~l---~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 87 DL---IGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp HH---HEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred hc---CCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 11 11000000000 0000100 1369999999999999999999999864 3345566666643
Q ss_pred c-----ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHH----------------------hCCCCCHHHHHHHHhhc-
Q 022641 196 S-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE----------------------EGLNLDAEALSTLSSIS- 246 (294)
Q Consensus 196 ~-----~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~l~~l~~~~- 246 (294)
. .+++++.+||. .+.+.+|+.++..+++++.+.. .++.+++++++++++.+
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~ 240 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVF 240 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 2 37899999998 5999999999999999887653 26678999999888753
Q ss_pred ----cC---------------cHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 247 ----QG---------------DLRRAITYLQGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 247 ----~G---------------~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
.| ++|.++++++.+...+ ...|+.+++..++.....+
T Consensus 241 ~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 241 ATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 23 6999999888766554 3459999999887765433
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.87 E-value=8.4e-21 Score=167.13 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=140.5
Q ss_pred hhhcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
...+.+..|++++|++.++..|..++.. ....+++|+||||||||++|+++++++. +..++.+
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v 199 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSI 199 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEE
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEE
Confidence 3456677899999999999999887731 2235699999999999999999999872 3456666
Q ss_pred cCCCCcch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhh
Q 022641 120 NASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (294)
Q Consensus 120 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~ 182 (294)
++++..+. ..++..+..... ..+.+|||||+|.+. ....+.|+..++..
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHH--------------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc
Confidence 66543221 122222222211 124699999999883 23556666666552
Q ss_pred ---cCcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHH
Q 022641 183 ---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 183 ---~~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l 257 (294)
...+.+|++||.+..+++++++||. .+.+++|+.+++..+++.++...+..+++..+..|++.+.| +.+.+.+++
T Consensus 266 ~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 266 GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567788899999999999999997 89999999999999999988777667899999999999988 455555666
Q ss_pred HHHHH
Q 022641 258 QGAAR 262 (294)
Q Consensus 258 ~~~~~ 262 (294)
+.++.
T Consensus 346 ~~a~~ 350 (444)
T 2zan_A 346 RDALM 350 (444)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65553
No 43
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.86 E-value=6.7e-21 Score=165.32 Aligned_cols=231 Identities=21% Similarity=0.191 Sum_probs=159.3
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHc----CCCCcEEEECCCCCCHHHHHHHHHHHhcCC----Ccc-CCcc
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELY-KSRV 116 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~-~~~~ 116 (294)
....+|..++.| ++++|++..+..+..++.. ...++++|+||||||||++++.+++.+... ... +..+
T Consensus 8 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 84 (384)
T 2qby_B 8 NPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ 84 (384)
T ss_dssp CTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE
T ss_pred ccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE
Confidence 445678788888 7789999999888876653 344579999999999999999999987321 011 4556
Q ss_pred eeecCCCCc-chh-HHHHHHHHHHhhhccc-CccCC-------CCCCCCcEEEEEeCCCCCCHHH-HHH-HHHHHHhhcC
Q 022641 117 LELNASDDR-GIN-VVRTKIKTFAAVAVGS-GQRRG-------GYPCPPYKIIILDEADSMTEDA-QNA-LRRTMETYSK 184 (294)
Q Consensus 117 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~lliiDei~~l~~~~-~~~-L~~~l~~~~~ 184 (294)
+.+++.... +.. .+...+..+....... +.... ........+|+|||+|.+.... .+. +..++... .
T Consensus 85 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~ 163 (384)
T 2qby_B 85 AYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-A 163 (384)
T ss_dssp EEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-S
T ss_pred EEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-c
Confidence 666654332 221 1222222211000000 00000 0000112399999999986542 444 44444443 6
Q ss_pred cceEEEEecCC---cccchHhhccc-cEEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHhhcc---CcHHHHHH
Q 022641 185 VTRFFFICNYI---SRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRRAIT 255 (294)
Q Consensus 185 ~~~ii~~~~~~---~~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~l~~~~~---G~~r~~~~ 255 (294)
...+|+++|.. ..+.+++.+|+ ..+.|+|++.+++..++...+.. .+..+++++++.+++.++ ||+|.+++
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~ 243 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVN 243 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHH
Confidence 77888888876 56788888886 59999999999999999998875 345789999999999988 99999999
Q ss_pred HHHHHHHHhC--CCCChhhhhhhcccc
Q 022641 256 YLQGAARLFG--SSITSKDLISVSGYP 280 (294)
Q Consensus 256 ~l~~~~~~~~--~~it~~~v~~~~~~~ 280 (294)
+++.+...+. ..|+.+++..++...
T Consensus 244 ~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 244 LLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9999987763 569999999887664
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.86 E-value=2e-20 Score=156.88 Aligned_cols=210 Identities=19% Similarity=0.196 Sum_probs=142.6
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
..+..|+++.|.+..++.|..++.. ....+++|+||||||||++|++++..+ +..++.+++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~ 82 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKG 82 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEh
Confidence 3456789999999999988887753 233469999999999999999999998 566776665
Q ss_pred CCCc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHh
Q 022641 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMET 181 (294)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--------------~~~~L~~~l~~ 181 (294)
++.. ....+...+..... ..+.+|+|||+|.+... .++.|+..++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~--------------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQ--------------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHH--------------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHh--------------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 4321 11122222222211 12469999999987543 35778888874
Q ss_pred h--cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHH
Q 022641 182 Y--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (294)
Q Consensus 182 ~--~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~ 255 (294)
. ...+.+|++||.+..+++++++ ||. .+.+++|+.+++.++++.+++..+.. ++..+..++..+.| ..+.+.+
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHH
Confidence 3 3467788999999999999988 886 89999999999999999888765442 22224555555433 1223333
Q ss_pred HHHHHHHHh-----------------------------CCCCChhhhhhhcccccCCCC
Q 022641 256 YLQGAARLF-----------------------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 256 ~l~~~~~~~-----------------------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
+++.++..+ ...|+.+++..++....++..
T Consensus 228 l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~ 286 (301)
T 3cf0_A 228 ICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 286 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCC
Confidence 333332211 035888999999988776543
No 45
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-20 Score=156.31 Aligned_cols=215 Identities=7% Similarity=0.035 Sum_probs=144.7
Q ss_pred hcccHHHHHHHHHH----HHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecCCCCcchhHHH-HH
Q 022641 63 VAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDDRGINVVR-TK 133 (294)
Q Consensus 63 ~~g~~~~~~~l~~~----l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~ 133 (294)
+.+++..+..+... +..+.+++++|+||||||||++++.+++++.... .....++.+|+....+...+. ..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 77888777766544 4557777899999999999999999999984221 113467788887655443322 22
Q ss_pred HHHHHhhhcccCc---------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh---hcCcceEEEEecCCc----c
Q 022641 134 IKTFAAVAVGSGQ---------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYIS----R 197 (294)
Q Consensus 134 ~~~~~~~~~~~~~---------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~---~~~~~~ii~~~~~~~----~ 197 (294)
...+.......+. ...........+++|||+|.+. .++.|+.+++- ......+|+++|... .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 2222111000000 0000012345799999999997 56666666652 234567788887753 2
Q ss_pred cchHhhcccc--EEEecCCCHHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHH
Q 022641 198 IIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGL-----------------------------------NLDAEALS 240 (294)
Q Consensus 198 ~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~l~ 240 (294)
+.+++.+|+. .|.|+|++.+++..++++.+....- .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 4556778884 7999999999999999999976421 36999999
Q ss_pred HHHh---hccCcHHHHHHHHHHHHHHhC-------------CCCChhhhhhhccc
Q 022641 241 TLSS---ISQGDLRRAITYLQGAARLFG-------------SSITSKDLISVSGY 279 (294)
Q Consensus 241 ~l~~---~~~G~~r~~~~~l~~~~~~~~-------------~~it~~~v~~~~~~ 279 (294)
.+++ ...||.|.++++|..+...++ ..||.+.+.+++.+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 9998 478999999999999987762 13666666655543
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.85 E-value=1.2e-20 Score=160.13 Aligned_cols=206 Identities=14% Similarity=0.126 Sum_probs=144.3
Q ss_pred cchhhc---ccHHHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 59 QVKDVA---HQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~---g~~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
+|++++ ++......+..++.... ..+++|+||||||||++++++++.+... +..++.+++.... ..+...
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~--~~~~~~ 83 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFA--QAMVEH 83 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHH--HHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHH--HHHHHH
Confidence 556665 35556666777776653 3569999999999999999999987432 3455666543321 111111
Q ss_pred HHHH-HhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhc-CcceEEEEecCC-c---ccchHhhcc
Q 022641 134 IKTF-AAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI-S---RIIEPLASR 205 (294)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~-~~~~ii~~~~~~-~---~~~~~l~~r 205 (294)
+... ...... ...+.++|+|||++.++. ..++.++..++... ....+|++++.+ . .+.+++.+|
T Consensus 84 ~~~~~~~~~~~--------~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR 155 (324)
T 1l8q_A 84 LKKGTINEFRN--------MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR 155 (324)
T ss_dssp HHHTCHHHHHH--------HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHH
T ss_pred HHcCcHHHHHH--------HhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhc
Confidence 1100 000000 001135999999999975 56777777776533 334566666543 3 478899999
Q ss_pred c---cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH-------h-CCCC-Chhhh
Q 022641 206 C---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-------F-GSSI-TSKDL 273 (294)
Q Consensus 206 ~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-------~-~~~i-t~~~v 273 (294)
| ..+.++| +.+++..++...+...++.+++++++.|++.+ ||+|.+.+.++.+..+ . ...| |.+++
T Consensus 156 ~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i 233 (324)
T 1l8q_A 156 FEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQI 233 (324)
T ss_dssp HHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHH
Confidence 9 5899999 99999999999999999999999999999999 9999999999987766 2 2347 88888
Q ss_pred hhhccc
Q 022641 274 ISVSGY 279 (294)
Q Consensus 274 ~~~~~~ 279 (294)
.+++..
T Consensus 234 ~~~~~~ 239 (324)
T 1l8q_A 234 VEFVAN 239 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.85 E-value=2.3e-20 Score=164.10 Aligned_cols=204 Identities=23% Similarity=0.208 Sum_probs=148.1
Q ss_pred CCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
...|+++.|.+..+..+.+.+.. ..+.+++|+||||||||++|++++.++ +.+++.+++++.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~ 85 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDF 85 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHH
Confidence 45789999999998877776532 123459999999999999999999998 667777776543
Q ss_pred cc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhh--
Q 022641 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY-- 182 (294)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~-- 182 (294)
.. ....+..+..... ..+.+|||||+|.+.. ..++.|+..++..
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~--------------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKA--------------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHH--------------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred HHHHhcccHHHHHHHHHHHHh--------------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 22 1222233222221 1246999999998742 2456677777643
Q ss_pred cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHhhccCcH-HHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDL-RRAITYL 257 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~l~~~~~G~~-r~~~~~l 257 (294)
...+.+|++||.+..+++++++ ||. .+.+++|+.+++.++++.+++.. .++++ .+..++..+.|+. +.+.+++
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHhcCCCcHHHHHHHH
Confidence 3456788889999888888886 887 89999999999999998877643 33333 3788999999977 7788888
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
..++..+ ...|+.+++..++.....
T Consensus 230 ~~Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 230 NEAALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 8777655 356999999998876543
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.85 E-value=2.2e-20 Score=153.95 Aligned_cols=214 Identities=18% Similarity=0.174 Sum_probs=138.8
Q ss_pred CcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (294)
.+|++++|+...+..+...+.. ....+++|+||||||||++|+++++.... ...+++.++++.... ..+...+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~---~~~~~~~v~~~~~~~-~~~~~~l~ 78 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNE-NLLDSELF 78 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---TTSCEEEEEGGGSCH-HHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc---cCCCeEEEecCCCCh-hHHHHHhc
Confidence 3577889998888777665543 33457999999999999999999987632 135677777766422 21211110
Q ss_pred HHHh-hhcccCc-cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-----------cCcceEEEEecCCc------
Q 022641 136 TFAA-VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYIS------ 196 (294)
Q Consensus 136 ~~~~-~~~~~~~-~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~~~~~------ 196 (294)
.... ...+... ..+.......++|+|||++.++...++.|++.++.. ...+.+|+++|...
T Consensus 79 g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~ 158 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNE 158 (265)
T ss_dssp CCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHH
T ss_pred CCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHc
Confidence 0000 0000000 000000123569999999999999999999999864 24577899998742
Q ss_pred -ccchHhhcccc--EEEecCCCH--HHHHHHHHHH----HHHhCC----CCCHHHHHHHHhh-ccCcHHHHHHHHHHHHH
Q 022641 197 -RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEGL----NLDAEALSTLSSI-SQGDLRRAITYLQGAAR 262 (294)
Q Consensus 197 -~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~----~~~~~~----~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~ 262 (294)
.+.+++.+|+. .+.++|+.. +++..++.++ +...+. .+++++++.|..+ +.||+|.+.++++.+..
T Consensus 159 ~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 159 GTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp TSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred CCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 35688899985 578888865 5666555444 334454 6899999999877 49999999999999876
Q ss_pred Hh-CCCCChhhhhh
Q 022641 263 LF-GSSITSKDLIS 275 (294)
Q Consensus 263 ~~-~~~it~~~v~~ 275 (294)
.. +..|+.+++..
T Consensus 239 ~~~~~~i~~~~l~~ 252 (265)
T 2bjv_A 239 RHGTSDYPLDDIII 252 (265)
T ss_dssp HHCCSSSCBCCCCS
T ss_pred hCCCCcCcHHHcch
Confidence 65 55688887743
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.85 E-value=1.2e-20 Score=161.74 Aligned_cols=227 Identities=16% Similarity=0.097 Sum_probs=147.1
Q ss_pred hhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCC-----CccCC-------------
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-----ELYKS------------- 114 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~-----~~~~~------------- 114 (294)
..-.+..|++++|++..+..+..........+++|+||||||||++|+++++.+... ..+.+
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 344567899999999888776665554445579999999999999999999987320 00000
Q ss_pred ---------cceeecCCCCcchhHHHHH---HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 022641 115 ---------RVLELNASDDRGINVVRTK---IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (294)
Q Consensus 115 ---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~ 182 (294)
.++.+. .......+... ...+.... .....+....+..++|+|||++.++...++.|+..++..
T Consensus 96 ~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~~~~~--~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 96 STNVIRKPTPVVDLP--LGVSEDRVVGALDIERAISKGE--KAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCEEEECCCEEEEC--TTCCHHHHHCEECHHHHHHHCG--GGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred ccccccCCCcccccC--CCcchhhheeechhhhhhcCCc--eeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 011100 00011111100 00000000 000001011123569999999999999999999999873
Q ss_pred c-------------CcceEEEEecCCc-ccchHhhccccE-EEecCCC-HHHHHHHHHHH--------------------
Q 022641 183 S-------------KVTRFFFICNYIS-RIIEPLASRCAK-FRFKPLS-EEVMSSRVLHI-------------------- 226 (294)
Q Consensus 183 ~-------------~~~~ii~~~~~~~-~~~~~l~~r~~~-i~~~~~~-~~~~~~~l~~~-------------------- 226 (294)
. ..+.+|+++|... .+.+++.+||.. +.+++|+ .++..+++.+.
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMD 251 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHH
Confidence 2 3566777888643 788999999985 9999995 55555666552
Q ss_pred ---------HHHhCCCCCHHHHHHHHhhccC----cHHHHHHHHHHHHHHh---C-CCCChhhhhhhcccccCC
Q 022641 227 ---------CNEEGLNLDAEALSTLSSISQG----DLRRAITYLQGAARLF---G-SSITSKDLISVSGYPTGG 283 (294)
Q Consensus 227 ---------~~~~~~~~~~~~l~~l~~~~~G----~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~~~~~ 283 (294)
....++.+++++++.|++.+.| ++|.+.++++.+...+ + ..|+.+++..++.....+
T Consensus 252 ~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 252 IRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 1123467999999999998766 8999999998776655 3 459999999887764433
No 50
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.84 E-value=5.2e-20 Score=159.60 Aligned_cols=221 Identities=18% Similarity=0.236 Sum_probs=151.5
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHc----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..++...+.| ++++|++..+..+..++.. ....+++|+||+|||||++++.+++.+......+..++.+++..
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3455555655 6789999999999988874 34457999999999999999999998732110023445554332
Q ss_pred CcchhH-------------------HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC----HHHHHHHHHHHH
Q 022641 124 DRGINV-------------------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----EDAQNALRRTME 180 (294)
Q Consensus 124 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~----~~~~~~L~~~l~ 180 (294)
...... .......+..... ....+.+|+|||++.+. ......|+..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---------DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---------TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---------ccCCeEEEEEcChhhhhccCcCHHHHHHhhchh
Confidence 111110 0011111111100 01235699999999875 344555666665
Q ss_pred hh-cCcceEEEEecCC---cccchHhhccc--cEEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHhhcc---Cc
Q 022641 181 TY-SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSISQ---GD 249 (294)
Q Consensus 181 ~~-~~~~~ii~~~~~~---~~~~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~l~~~~~---G~ 249 (294)
.. .....+|++++.. ..+.+.+.+|+ ..+.++|++.+++.+++...+.... ..+++++++.+++.++ |+
T Consensus 158 ~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 237 (386)
T 2qby_A 158 EVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD 237 (386)
T ss_dssp SCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC
T ss_pred hcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 42 3466788888866 35677888888 5899999999999999999886533 5689999999999988 99
Q ss_pred HHHHHHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 250 LRRAITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
+|.++++++.+...+ ...|+.+++..++...
T Consensus 238 ~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999999999887665 2479999998776554
No 51
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=9.6e-21 Score=170.51 Aligned_cols=218 Identities=21% Similarity=0.233 Sum_probs=141.8
Q ss_pred chhhcccHHHHHHHHHHHHc------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 60 VKDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
.+++.|.++++..+...+.. ...++++|+||||||||+++++++..+ ...+..+++........+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhH
Confidence 34688999888777655421 234579999999999999999999998 566666665543221111111
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhhc---------------CcceEEEEecC
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNY 194 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~----~~~~L~~~l~~~~---------------~~~~ii~~~~~ 194 (294)
...+....................+++|||++.++.. .++.|++.++... ..+.+|+++|.
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 0000000000000000001123459999999999876 3477888876432 45678889999
Q ss_pred CcccchHhhccccEEEecCCCHHHHHHHHHHHHH-----Hh-----CCCCCHHHHHHHHhhc--cCcHHHHHHHHHHHHH
Q 022641 195 ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN-----EE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (294)
Q Consensus 195 ~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~l~~l~~~~--~G~~r~~~~~l~~~~~ 262 (294)
...++++|++||.++.|++|+.++...++.+++. .. ++.++++++..+++.+ .|++|.+.+.++.++.
T Consensus 234 ~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 234 LATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp TTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred cccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 9999999999999999999999999999988763 23 3457899999988753 4788888777766544
Q ss_pred Hh----------CCCCChhhhhhhcccccCC
Q 022641 263 LF----------GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 263 ~~----------~~~it~~~v~~~~~~~~~~ 283 (294)
.+ ...||.+++.++++.....
T Consensus 314 ~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~ 344 (543)
T 3m6a_A 314 KAAKAIVAEERKRITVTEKNLQDFIGKRIFR 344 (543)
T ss_dssp HHHHHHHTTCCSCCEECTTTTHHHHCSCCSC
T ss_pred HHHHHHHhcCCcceecCHHHHHHHhCCcccC
Confidence 33 1249999999999876543
No 52
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.83 E-value=1.2e-19 Score=152.01 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=144.2
Q ss_pred hhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHh
Q 022641 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
+++|+...+..+...+.. ....+++|+||||||||++|+++++.... .+.+++.+++..... ..+...+ ..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~---~~~~~v~v~~~~~~~-~l~~~~l---fg 75 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR---SDRPLVTLNCAALNE-SLLESEL---FG 75 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC---SSSCCCEEECSSCCH-HHHHHHH---TC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc---cCCCeEEEeCCCCCh-HHHHHHh---cC
Confidence 577887777777766654 33456999999999999999999987522 245778888876532 1111111 10
Q ss_pred hhccc--C---ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------
Q 022641 140 VAVGS--G---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (294)
Q Consensus 140 ~~~~~--~---~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~------- 196 (294)
...+. + ...+.......++|||||++.++...+..|+..++... ..+.+|++||...
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred ccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 00000 0 00000011234699999999999999999999998753 3577899998752
Q ss_pred ccchHhhcccc--EEEecCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh
Q 022641 197 RIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (294)
Q Consensus 197 ~~~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~ 264 (294)
.+.+.+.+|+. .+.++|+. .+++..++.+++. ..+ ..+++++++.+..++ .||+|.+.++++.+....
T Consensus 156 ~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 24567888875 56788877 4666666665544 333 468999999999986 999999999999988776
Q ss_pred -CCCCChhhhhhhc
Q 022641 265 -GSSITSKDLISVS 277 (294)
Q Consensus 265 -~~~it~~~v~~~~ 277 (294)
+..|+.+++...+
T Consensus 236 ~~~~i~~~~l~~~~ 249 (304)
T 1ojl_A 236 TGEYISERELPLAI 249 (304)
T ss_dssp CSSSBCGGGSCGGG
T ss_pred CCCcccHHhhhhhh
Confidence 4568888886544
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.83 E-value=2.6e-20 Score=165.12 Aligned_cols=198 Identities=15% Similarity=0.190 Sum_probs=144.3
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (294)
....+|.++++|..++.++|++..+..+...+.....++++|+||||||||++|+++++.+.+.. ..+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 66779999999999999999999999999999988888999999999999999999999984322 23556666665
Q ss_pred CCCc---chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc--
Q 022641 122 SDDR---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (294)
Q Consensus 122 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~-- 196 (294)
+... ....+...+..... ..+.+|||| .....++.|+..++. ....+|.+||...
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~--------------~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (468)
T ss_dssp --------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred CccccchHHHHHHHHHHHHHh--------------cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHH
Confidence 5110 01122233332221 123499999 344566777777764 4677888888764
Q ss_pred ---ccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC------cHHHHHHHHHHHHHH
Q 022641 197 ---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYLQGAARL 263 (294)
Q Consensus 197 ---~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G------~~r~~~~~l~~~~~~ 263 (294)
.+++++.+||..+.+++|+.++...+++.++.. +++.++++++..++..+.+ -++.++++++.++..
T Consensus 305 ~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999987765 7788999999999987653 366799988877653
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.83 E-value=7.5e-20 Score=154.24 Aligned_cols=196 Identities=22% Similarity=0.313 Sum_probs=138.9
Q ss_pred hhhcccHHHHHHHHHHHHcCC---------CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
..++|+..++..+...+.... ..+++|+||||||||++|+++++.+.+. ..+++.++++.........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeecccccccccHH
Confidence 467899999988888876531 1259999999999999999999998443 2345556554433322221
Q ss_pred HHHHHHHhhhccc-CccCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~-----~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
..+.. ..+. +.... .......++|+|||++.+++..++.|++.++... .+..+|++||.
T Consensus 94 ~l~g~----~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 94 RLIGA----PPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHHCC----CTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred HhcCC----CCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 11100 0000 00000 0001224699999999999999999999998754 24558888988
Q ss_pred --------------------------CcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHH
Q 022641 195 --------------------------ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEA 238 (294)
Q Consensus 195 --------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~ 238 (294)
...+.++|.+||. .+.|.||+.+++..++...+... .+.+++++
T Consensus 170 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 4fcw_A 170 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAA 249 (311)
T ss_dssp THHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHH
T ss_pred CHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHH
Confidence 3456788999995 88999999999999999877642 34589999
Q ss_pred HHHHHhhc---cCcHHHHHHHHHHHHHH
Q 022641 239 LSTLSSIS---QGDLRRAITYLQGAARL 263 (294)
Q Consensus 239 l~~l~~~~---~G~~r~~~~~l~~~~~~ 263 (294)
++.|++++ .||+|.+.+.++.+...
T Consensus 250 ~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 250 KDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp HHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred HHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 99999974 59999999999876653
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.83 E-value=1.1e-21 Score=162.03 Aligned_cols=210 Identities=19% Similarity=0.177 Sum_probs=142.4
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
+.+..|++++|++..+..+...+.. ....+++|+||||||||++|+++++++ ..+++.+++.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~v~~~ 78 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------HVPFFSMGGS 78 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH------TCCCCCCCSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEechH
Confidence 3456788999998888877776541 223459999999999999999999998 4455555544
Q ss_pred CCcch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH---------------HHHHHHHHHHh
Q 022641 123 DDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---------------AQNALRRTMET 181 (294)
Q Consensus 123 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~---------------~~~~L~~~l~~ 181 (294)
..... ..+...+..... ..+.+|+|||+|.+... .++.|+..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKK--------------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHH--------------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred HHHHhhcchHHHHHHHHHHHHHh--------------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 32110 111111111111 12359999999998643 23345555554
Q ss_pred hc---CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHH
Q 022641 182 YS---KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAI 254 (294)
Q Consensus 182 ~~---~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~ 254 (294)
.. ..+.+|+++|.+..+++++.+ ||. .+.+++|+.+++.++++.+++...+. ++..+..+++.+.| ..|.+.
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHH
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHH
Confidence 32 236688888988888888888 775 79999999999999998877543221 23336677877776 456777
Q ss_pred HHHHHHHHHh----CCCCChhhhhhhcccccCCCC
Q 022641 255 TYLQGAARLF----GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 255 ~~l~~~~~~~----~~~it~~~v~~~~~~~~~~~~ 285 (294)
++++.++..+ ...|+.+++..++....+...
T Consensus 224 ~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 224 NIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcch
Confidence 7777777666 356999999999988766543
No 56
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.82 E-value=7.6e-20 Score=156.29 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=154.3
Q ss_pred HHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCC
Q 022641 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (294)
Q Consensus 74 ~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
.+.+.....+.++|+||+|+||++.+..+++.+.+.......++.++. . ..++.........+..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~plf---------- 74 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQAMSLF---------- 74 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHHHHHHHHHC----------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHHHhcCcCCc----------
Confidence 334443344569999999999999999999988644322222333432 1 3344444444333322
Q ss_pred CCcEEEEEeCCCC-CCHHHHHHHHHHHHhhcCcceEEEEecC------CcccchHhhccccEEEecCCCHHHHHHHHHHH
Q 022641 154 PPYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNY------ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226 (294)
Q Consensus 154 ~~~~lliiDei~~-l~~~~~~~L~~~l~~~~~~~~ii~~~~~------~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 226 (294)
+++.+++|||++. ++...++.|++.+++++....+|++++. ...+.+.+.+||..+.|.+++..++..++.++
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 3457999999999 9988999999999999989988888865 34578899999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCChhhhhhhcccccCC
Q 022641 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 227 ~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~ 283 (294)
++.+|+.+++++++.+++.++||+|.+.+.++.++.+. ++.||.++|..+++.....
T Consensus 155 ~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~ 212 (343)
T 1jr3_D 155 AKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHF 212 (343)
T ss_dssp HHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCC
T ss_pred HHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999875 5579999999988776544
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.82 E-value=1.4e-19 Score=160.27 Aligned_cols=209 Identities=17% Similarity=0.149 Sum_probs=149.9
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
...+..|++++|.+..++.|.+++.. ....+++|+||||||||++|+++++++ +.+++.++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn 270 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEE
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEE
Confidence 45667889999999999999887753 334569999999999999999999998 67788887
Q ss_pred CCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhc
Q 022641 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS 183 (294)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~ 183 (294)
+....+ ...+...+..... ..+.+|||||+|.+. ...++.|+..++...
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~--------------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEK--------------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHH--------------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred chHhhhhhcchhHHHHHHHHHHHHh--------------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 643221 1122222222211 123699999997663 256788999998543
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc-HHHHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYL 257 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~-~r~~~~~l 257 (294)
..+.+|.+||.+..+++++.+ ||. .+.+++|+.+++.++++.++....+. .+..+..++..+.|. .+.+..++
T Consensus 337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHH
Confidence 456788889999889999988 776 79999999999999999887654333 233467788887763 45555566
Q ss_pred HHHHHHh--C-------------------CCCChhhhhhhcccccCC
Q 022641 258 QGAARLF--G-------------------SSITSKDLISVSGYPTGG 283 (294)
Q Consensus 258 ~~~~~~~--~-------------------~~it~~~v~~~~~~~~~~ 283 (294)
..++..+ + ..|+.+++..++....+.
T Consensus 416 ~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp HHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 6665444 1 137888998888876654
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.80 E-value=6e-19 Score=167.23 Aligned_cols=208 Identities=17% Similarity=0.189 Sum_probs=144.9
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (294)
....+|.++++|..++.++|++..+..+..++.....++++|+||||||||++++++++.+.+.. ..+..++.+++
T Consensus 155 ~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 155 QYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 45668999999999999999999999999999988888899999999999999999999873211 12456666766
Q ss_pred CCCcch----hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhhcCcceEE
Q 022641 122 SDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 122 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--------~~~~~~L~~~l~~~~~~~~ii 189 (294)
+..... ......+......... ...+.+|||||+|.+. ....+.|..+++. ....+|
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I 303 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQ---------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLI 303 (854)
T ss_dssp -----------CHHHHHHHHHHHHHT---------TCSSEEEEECCC-------------------HHHHHT--TCCCEE
T ss_pred HHhhccCccchHHHHHHHHHHHHHHh---------cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEE
Confidence 543211 1111222222221111 0124599999999986 3445667777765 455677
Q ss_pred EEecCCc----ccchHhhccccEEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHhhccCc------HHHHHH
Q 022641 190 FICNYIS----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQGD------LRRAIT 255 (294)
Q Consensus 190 ~~~~~~~----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~l~~~~~G~------~r~~~~ 255 (294)
++++... .+++++.+||..+.+++|+.++...+++.++. .+++.++++++..+++.+.|. +..++.
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 7777553 36789999999999999999999999987765 457889999999999987543 788898
Q ss_pred HHHHHHHHh
Q 022641 256 YLQGAARLF 264 (294)
Q Consensus 256 ~l~~~~~~~ 264 (294)
++..++...
T Consensus 384 lldea~a~~ 392 (854)
T 1qvr_A 384 LIDEAAARL 392 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777554
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=1.1e-18 Score=163.83 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=160.2
Q ss_pred cccCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceee
Q 022641 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLEL 119 (294)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~ 119 (294)
......+|.++++|..++.++|++..+..+.+.+......+++|+||||||||++|+++++.+.+.. .....++.+
T Consensus 169 l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 169 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred HHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 3467889999999999999999999999999999888888899999999999999999999874321 123334444
Q ss_pred cCCCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhhcCcc
Q 022641 120 NASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVT 186 (294)
Q Consensus 120 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~---------~~~~~~L~~~l~~~~~~~ 186 (294)
+..... ........+......... ..+.+|||||+|.+. ....+.|..+++. ...
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~----------~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~ 316 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKI 316 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSS----------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCC
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHh----------cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCe
Confidence 332211 111122222222222111 124699999999982 2334555555543 456
Q ss_pred eEEEEecCC-----cccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC------cHH
Q 022641 187 RFFFICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLR 251 (294)
Q Consensus 187 ~ii~~~~~~-----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G------~~r 251 (294)
.+|++++.. ...++++.+||..+.+++|+.++...+++.++.. +++.++++++..++..+.| .+.
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTH
T ss_pred EEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCch
Confidence 677777643 3456889999999999999999999999987765 6888999999999988655 355
Q ss_pred HHHHHHHHHHHHh--------CCCCChhhhhhhcccc
Q 022641 252 RAITYLQGAARLF--------GSSITSKDLISVSGYP 280 (294)
Q Consensus 252 ~~~~~l~~~~~~~--------~~~it~~~v~~~~~~~ 280 (294)
.++.++..++... ...++.+++..++...
T Consensus 397 ~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 7888887766442 2458999998877653
No 60
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.80 E-value=1.9e-18 Score=141.42 Aligned_cols=206 Identities=23% Similarity=0.234 Sum_probs=136.0
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
...+..|++++|.+..+..+.+.... ...++++|+|||||||||++++++..+ ...++.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~------~~~~i~~~~ 82 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASG 82 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeeH
Confidence 34456789999998888776655432 112359999999999999999999987 455555554
Q ss_pred CCCcc--hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhcC-
Q 022641 122 SDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK- 184 (294)
Q Consensus 122 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~~- 184 (294)
.+... .......+......... ..+.++++||++.+.. ...+.++..++....
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTT----------SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh----------cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 32110 11111111111111100 1235999999976521 123455555554332
Q ss_pred -cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhccCcH-HHHHHHHH
Q 022641 185 -VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQ 258 (294)
Q Consensus 185 -~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~~G~~-r~~~~~l~ 258 (294)
...++.++|.+..+++++.+ ||. .+.+++|+.+++.++++..++ +..++++. +..+++.+.|+. |.+.+++.
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677888889999988 665 799999999999999987763 45555443 888999998865 77778887
Q ss_pred HHHHHh----CCCCChhhhhhhc
Q 022641 259 GAARLF----GSSITSKDLISVS 277 (294)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~ 277 (294)
.++..+ ...||.+++.+++
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHh
Confidence 777655 3469999998875
No 61
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=3.3e-19 Score=147.46 Aligned_cols=162 Identities=13% Similarity=0.170 Sum_probs=110.0
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc---hhHHHHHHHHHHhhhcccCccCCCCCCCCcE
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---INVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
...+++|+||||||||++|+++++.+ +.+++.+++++... .......+........ .....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~ 126 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY----------KSQLS 126 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH----------TSSEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH----------hcCCc
Confidence 33469999999999999999999997 66777776554221 1111111121111110 12356
Q ss_pred EEEEeCCCCC----------CHHHHHHHHHHHHh---hcCcceEEEEecCCcccch-Hhhcccc-EEEecCCCH-HHHHH
Q 022641 158 IIILDEADSM----------TEDAQNALRRTMET---YSKVTRFFFICNYISRIIE-PLASRCA-KFRFKPLSE-EVMSS 221 (294)
Q Consensus 158 lliiDei~~l----------~~~~~~~L~~~l~~---~~~~~~ii~~~~~~~~~~~-~l~~r~~-~i~~~~~~~-~~~~~ 221 (294)
+|+|||+|.+ ....++.|...++. ....+.+|+++|.+..+.+ .+.+||. .+.++|++. +++..
T Consensus 127 vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~ 206 (272)
T 1d2n_A 127 CVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLE 206 (272)
T ss_dssp EEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHH
T ss_pred EEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHH
Confidence 9999999887 44556666666654 2334557778888766655 5778864 789988887 66666
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccC-----cHHHHHHHHHHHHHH
Q 022641 222 RVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAARL 263 (294)
Q Consensus 222 ~l~~~~~~~~~~~~~~~l~~l~~~~~G-----~~r~~~~~l~~~~~~ 263 (294)
++.+ . ..++++.+..+++.+.| ++|.++++++.+...
T Consensus 207 i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 207 ALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp HHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred HHHh----c-CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 5543 2 34789999999999877 999999999988764
No 62
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.79 E-value=1.7e-18 Score=153.09 Aligned_cols=210 Identities=22% Similarity=0.206 Sum_probs=147.0
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.+..|++++|.+..+..+.+.... ....+++|+||||||||+++++++..+ ...++.+++++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehhH
Confidence 567899999999998877766532 112359999999999999999999998 56777777655
Q ss_pred Ccch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhc--Cc
Q 022641 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--KV 185 (294)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~--~~ 185 (294)
.... ......+....... ....+.+++|||+|.+.. ...+.|+..++... ..
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a----------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETA----------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTS----------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred HHHhhhhhHHHHHHHHHHHH----------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 3221 11111122111111 011235999999987631 23345555555433 34
Q ss_pred ceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhccCcH-HHHHHHHHHH
Q 022641 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (294)
Q Consensus 186 ~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~~G~~-r~~~~~l~~~ 260 (294)
..++.++|.+..+++++.+ ||. .+.+++|+.+++.++++.+++ +..+++++ +..++..+.|+. |.+.+++..+
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5567777888888889988 565 899999999999999976653 45555444 888999999987 8888999988
Q ss_pred HHHh----CCCCChhhhhhhcccccCC
Q 022641 261 ARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 261 ~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
+..+ ...|+.+++..++......
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 8766 2469999999988876543
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.79 E-value=2.8e-18 Score=148.36 Aligned_cols=207 Identities=18% Similarity=0.202 Sum_probs=137.7
Q ss_pred hhhcccHHHHHHHHHHHH----c--------------------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCC
Q 022641 61 KDVAHQEEVVRVLTNTLE----T--------------------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----~--------------------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~ 110 (294)
+.++|++.+++.|..++. . ....+++|+||||||||++|+++++.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l---- 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL---- 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT----
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh----
Confidence 357899999988887762 0 123569999999999999999999998
Q ss_pred ccCCcceeecCCCCcch----hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--------------HH
Q 022641 111 LYKSRVLELNASDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQ 172 (294)
Q Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--------------~~ 172 (294)
+.+++.+++...... ......+......... ......+++|+|||++.+... .+
T Consensus 97 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~ 168 (376)
T 1um8_A 97 --DIPIAISDATSLTEAGYVGEDVENILTRLLQASDW------NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQ 168 (376)
T ss_dssp --TCCEEEEEGGGCC--------CTHHHHHHHHHTTT------CHHHHTTSEEEEETGGGC--------------CHHHH
T ss_pred --CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccc------hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHH
Confidence 566666665443211 1111111111111000 000112359999999999877 88
Q ss_pred HHHHHHHHhhc---------------------CcceEEEEecC-------------------------------------
Q 022641 173 NALRRTMETYS---------------------KVTRFFFICNY------------------------------------- 194 (294)
Q Consensus 173 ~~L~~~l~~~~---------------------~~~~ii~~~~~------------------------------------- 194 (294)
+.|+++++... .+..+|+++|.
T Consensus 169 ~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~ 248 (376)
T 1um8_A 169 QALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQT 248 (376)
T ss_dssp HHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCH
T ss_pred HHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCH
Confidence 99999998531 33456666551
Q ss_pred ----CcccchHhhcccc-EEEecCCCHHHHHHHHHH----HHH----H---h--CCCCCHHHHHHHHhhcc---CcHHHH
Q 022641 195 ----ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH----ICN----E---E--GLNLDAEALSTLSSISQ---GDLRRA 253 (294)
Q Consensus 195 ----~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~----~~~----~---~--~~~~~~~~l~~l~~~~~---G~~r~~ 253 (294)
...+.++|.+|+. ++.|+|++.+++..++.. ++. . . ++.+++++++.|++.+. |++|.+
T Consensus 249 ~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L 328 (376)
T 1um8_A 249 HDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGL 328 (376)
T ss_dssp HHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGH
T ss_pred HHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHH
Confidence 1125688899994 899999999999998862 221 1 1 34589999999999854 999999
Q ss_pred HHHHHHHHHHh-----C-----CCCChhhhhhhccc
Q 022641 254 ITYLQGAARLF-----G-----SSITSKDLISVSGY 279 (294)
Q Consensus 254 ~~~l~~~~~~~-----~-----~~it~~~v~~~~~~ 279 (294)
.+.++.+.... . ..||.+++......
T Consensus 329 ~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 329 RAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 99998876542 1 13888888876655
No 64
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=5.1e-19 Score=138.32 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=116.6
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCc----cCCcceeecCC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNAS 122 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~~ 122 (294)
...||.+++.|..+++++|++..+..+..++......+++|+||+|||||++++.+++.+.+... .+..++.+++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T 1jbk_A 8 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp HEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred HhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence 35689999999999999999999999999998877778999999999999999999998743211 13344444432
Q ss_pred CC----cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--------HHHHHHHHHHhhcCcceEEE
Q 022641 123 DD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------AQNALRRTMETYSKVTRFFF 190 (294)
Q Consensus 123 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--------~~~~L~~~l~~~~~~~~ii~ 190 (294)
.. .........+......... ..++.+|+|||++.+... ..+.|...++. ....+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~ 156 (195)
T 1jbk_A 88 ALVAGAKYRGEFEERLKGVLNDLAK---------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVG 156 (195)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHHH---------STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEE
T ss_pred HHhccCCccccHHHHHHHHHHHHhh---------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEE
Confidence 21 1112222222222221110 122459999999998532 35666666654 4566788
Q ss_pred EecCCc-----ccchHhhccccEEEecCCCHHHHHHHH
Q 022641 191 ICNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 191 ~~~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l 223 (294)
+++... .+++++.+||..+.+.+|+.+++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 887654 578999999999999999999988764
No 65
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.77 E-value=2.2e-17 Score=136.91 Aligned_cols=204 Identities=23% Similarity=0.240 Sum_probs=134.2
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.+..|++++|.+..+..+.+.... ...++++|+||+||||||++++++..+ ...++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~------~~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc------CCCEEEecHHH
Confidence 456789999999888777665432 112359999999999999999999987 45555555432
Q ss_pred Ccc--hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HH---HHHHHHHHHHhhc--Cc
Q 022641 124 DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------ED---AQNALRRTMETYS--KV 185 (294)
Q Consensus 124 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~---~~~~L~~~l~~~~--~~ 185 (294)
... .......+......... ..+.++++||++.+. .. ..+.++..++... ..
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHT----------SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHh----------cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 110 01111111111111110 113599999997652 11 2233444444322 23
Q ss_pred ceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhccCcH-HHHHHHHHHH
Q 022641 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (294)
Q Consensus 186 ~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~~G~~-r~~~~~l~~~ 260 (294)
..++.++|.+..+++++.+ ||. .+.+++|+.+++.++++.+++ +..+++++ +..++..+.|+. +.+.++++.+
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566677888889999987 665 799999999999999987764 45555443 788999999876 6777788777
Q ss_pred HHHh----CCCCChhhhhhhc
Q 022641 261 ARLF----GSSITSKDLISVS 277 (294)
Q Consensus 261 ~~~~----~~~it~~~v~~~~ 277 (294)
+..+ ...|+.+++.+++
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 6654 3469999998875
No 66
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.77 E-value=1.1e-18 Score=161.36 Aligned_cols=209 Identities=17% Similarity=0.144 Sum_probs=145.2
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
....|+++.|.+..+..|.+++.. ..+.+++|+||||||||++|+++|+++ +.+++.++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhH
Confidence 345789999998888888877632 123459999999999999999999998 7788888765
Q ss_pred CCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhhc--
Q 022641 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS-- 183 (294)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~~~~L~~~l~~~~-- 183 (294)
+..+ ...++..+..... ..+.||+|||+|.+.+ ...+.|+..|+...
T Consensus 273 ~l~sk~~gese~~lr~lF~~A~~--------------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 273 EIMSKLAGESESNLRKAFEEAEK--------------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp HHHSSCTTHHHHHHHHHHHHHTT--------------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred HhhcccchHHHHHHHHHHHHHHH--------------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 4322 2233333333221 2346999999998842 35667777787644
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc-HHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQG 259 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~-~r~~~~~l~~ 259 (294)
..+.+|.+||.+..+++++++ ||. .|.++.|+.+++.++++.+++..... ++..+..|+..+.|- ...+..+++.
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSE 417 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHH
Confidence 356678889999999999998 887 79999999999999998766432221 233477888887652 3333334443
Q ss_pred HHHHh---------------------CCCCChhhhhhhcccccCCCC
Q 022641 260 AARLF---------------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 260 ~~~~~---------------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
++..+ ...++.+++..++....+...
T Consensus 418 A~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred HHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 33222 124788888888888776543
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.77 E-value=4.3e-18 Score=159.68 Aligned_cols=198 Identities=15% Similarity=0.193 Sum_probs=143.1
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (294)
....+|.+++++..++.++|++..++.+..++......|++|+||||||||++|+++++.+.+.. ..+..++.++.
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 56779999999999999999999999999999988888999999999999999999999974321 22445555555
Q ss_pred CCC---cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc--
Q 022641 122 SDD---RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (294)
Q Consensus 122 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~-- 196 (294)
... .....+...+..... ..+.+|||| .....++.|+..++. ....+|.+||...
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~--------------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (758)
T ss_dssp --------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred cccccchHHHHHHHHHHHHHh--------------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHH
Confidence 111 011123333333221 123599999 334566777777763 5677888888766
Q ss_pred ---ccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC------cHHHHHHHHHHHHHH
Q 022641 197 ---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYLQGAARL 263 (294)
Q Consensus 197 ---~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G------~~r~~~~~l~~~~~~ 263 (294)
.+++++.+||..+.+++|+.+++..+++.++.. +++.++++++..+++.+.+ .+..++.++..++..
T Consensus 305 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999977755 6788999999999887543 467888888877643
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=6.2e-18 Score=158.61 Aligned_cols=186 Identities=20% Similarity=0.304 Sum_probs=134.9
Q ss_pred hhhcccHHHHHHHHHHHHcCC-------CC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHH-
Q 022641 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV- 130 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (294)
..++|++..+..+...+.... .+ +++|+||||||||++|+++++.++.. ..+++.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 467899999988888776422 12 59999999999999999999998433 346667766543221110
Q ss_pred HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCcc--
Q 022641 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYISR-- 197 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~~-- 197 (294)
...+...... ..+++|+|||++.+++..++.|++++++.. .++.+|++||.+..
T Consensus 568 ~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 GGQLTEKVRR-------------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp ---CHHHHHH-------------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred cchhhHHHHh-------------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 0011111100 123499999999999999999999999733 35688999986432
Q ss_pred ----------cchHhhccc-cEEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHhh---ccCcHHHHH
Q 022641 198 ----------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTLSSI---SQGDLRRAI 254 (294)
Q Consensus 198 ----------~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~l~~l~~~---~~G~~r~~~ 254 (294)
+.++|.+|| ..+.|+|++.+++..++...+... .+.+++++++.|++. ..|++|.+.
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 678899999 499999999999999998877642 345899999999875 468899888
Q ss_pred HHHHHHHH
Q 022641 255 TYLQGAAR 262 (294)
Q Consensus 255 ~~l~~~~~ 262 (294)
+.++.+..
T Consensus 715 ~~i~~~v~ 722 (758)
T 3pxi_A 715 RAIQKHVE 722 (758)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 88886543
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.76 E-value=2.8e-19 Score=165.32 Aligned_cols=207 Identities=18% Similarity=0.187 Sum_probs=124.2
Q ss_pred CcchhhcccHHHHHHHHHHHHcC-------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC-
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD- 123 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~- 123 (294)
..|+++.|.++.++.|.+.+... ....+||+||||||||.+|+++|.++ +.+++.++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l 547 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL 547 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchh
Confidence 46788999999999888776321 22349999999999999999999998 77777776543
Q ss_pred -----CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhcC
Q 022641 124 -----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK 184 (294)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~~ 184 (294)
..+...++..+...... .+.||||||+|.+.. ...+.|+..|+....
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~--------------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA--------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT--------------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred hccccchHHHHHHHHHHHHHHc--------------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 23444555555554332 235999999998732 145678888886543
Q ss_pred --cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhc----cCcHHHHHH
Q 022641 185 --VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS----QGDLRRAIT 255 (294)
Q Consensus 185 --~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~----~G~~r~~~~ 255 (294)
.+.+|.+||.+..+++++++ ||. .|+++.|+.+++.++++.++++..+. ++-.+..|++.+ +.|+..+++
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHH
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 45667788999999999998 998 89999999999999998777543322 233466677664 457776665
Q ss_pred HHHHHHHHh--------------------------CCCCChhhhhhhcccccCCCC
Q 022641 256 YLQGAARLF--------------------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 256 ~l~~~~~~~--------------------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
.....+... ...|+++|+..++....++..
T Consensus 693 ~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 693 RACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HHHHHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 443322111 124899999999998887643
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=1.1e-17 Score=157.22 Aligned_cols=183 Identities=21% Similarity=0.243 Sum_probs=133.9
Q ss_pred hhhcccHHHHHHHHHHHHcCC-------C--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch----
Q 022641 61 KDVAHQEEVVRVLTNTLETAN-------C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---- 127 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---- 127 (294)
..++|++..+..+...+.... . .+++|+||||||||++|+++++.+ +..++.++++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHh
Confidence 457899999988877765321 1 259999999999999999999998 456666665432111
Q ss_pred --------hHH---HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------Cc
Q 022641 128 --------NVV---RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KV 185 (294)
Q Consensus 128 --------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~ 185 (294)
..- ...+..... ...+.+|+|||++.+++..++.|++++++.. .+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~~-------------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAVI-------------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHH-------------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcCCCCCCcCccccchHHHHHH-------------hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 000 001111110 1224699999999999999999999999643 34
Q ss_pred ceEEEEecCCc-------------------------ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHh---------
Q 022641 186 TRFFFICNYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE--------- 230 (294)
Q Consensus 186 ~~ii~~~~~~~-------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~--------- 230 (294)
+.+|++||... .+.++|.+||. ++.|+|++.+++..++...+...
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 66888888643 46788999995 89999999999999999887632
Q ss_pred CCCCCHHHHHHHHhhc---cCcHHHHHHHHHHHHH
Q 022641 231 GLNLDAEALSTLSSIS---QGDLRRAITYLQGAAR 262 (294)
Q Consensus 231 ~~~~~~~~l~~l~~~~---~G~~r~~~~~l~~~~~ 262 (294)
.+.+++++++.|++.+ +++.|.+.+.++.+..
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 2468999999999875 4458888888877664
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.75 E-value=1.4e-16 Score=131.35 Aligned_cols=213 Identities=16% Similarity=0.130 Sum_probs=133.9
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...|+++.|.+.+++.|.+.+.. ...++++|+||||||||+++++++..+ +..++.+++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPE 79 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHH
Confidence 45788999999998888765421 122359999999999999999999987 55677777765
Q ss_pred Ccch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhhc--CcceE
Q 022641 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRF 188 (294)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~~~~L~~~l~~~~--~~~~i 188 (294)
.... ......+..+...... ..+.++++||++.+.. ...+.++..++... ....+
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~----------~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKN----------SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHH----------TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHh----------cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 4332 1122222222211100 1135999999998631 13445566665433 24456
Q ss_pred EEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHh-CCCCC-HHHHHHHHhh------ccCcHHHHHHHH
Q 022641 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE-GLNLD-AEALSTLSSI------SQGDLRRAITYL 257 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~l~~l~~~------~~G~~r~~~~~l 257 (294)
+.++|.+..+++++++ ||. .|.+++|+.+++.++++.+++.. ...++ +-.+..++.. +++|+..+++..
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a 229 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREA 229 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHH
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHH
Confidence 6778999999999987 887 79999999999999998877542 22222 2336666653 344665555433
Q ss_pred HHHHHHh------------CCCCChhhhhhhcccccCCCC
Q 022641 258 QGAARLF------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 258 ~~~~~~~------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
...+... ...|+.+|+..++....++..
T Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 230 SICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 3222110 125999999999999887643
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.75 E-value=2.9e-18 Score=133.34 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=110.4
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCc----cCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~ 121 (294)
....+|.++++|..+++++|++..+..+..++......+++|+||+|||||++++.+++.+.+... .+..++.+++
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 456789999999999999999999999999998877778999999999999999999999843211 1334444432
Q ss_pred CCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhhcCcceE
Q 022641 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~---------~~~~~~L~~~l~~~~~~~~i 188 (294)
.... ........+......... ...+.+|+|||++.+. ....+.|...++. ....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~i 155 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQD---------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRC 155 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHH---------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHh---------cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeE
Confidence 2110 111111122222111111 0124599999999986 3456667777654 45668
Q ss_pred EEEecCCc-----ccchHhhccccEEEecCCC
Q 022641 189 FFICNYIS-----RIIEPLASRCAKFRFKPLS 215 (294)
Q Consensus 189 i~~~~~~~-----~~~~~l~~r~~~i~~~~~~ 215 (294)
|++++... .+++++.+||..+.+++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 88887654 5789999999999998875
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.74 E-value=4.1e-17 Score=144.44 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=134.3
Q ss_pred hhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhh
Q 022641 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (294)
..++|++..++.+...+..+. +++|+||||||||++|+++++.+.. ...+...++... ....+ +......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~~~~~~~~-t~~dL---~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN----ARAFEYLMTRFS-TPEEV---FGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSS----CCEEEEECCTTC-CHHHH---HCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhh----hhHHHHHHHhcC-CHHHh---cCcccHH
Confidence 468899999999988888775 8999999999999999999987621 112222222211 11111 1100000
Q ss_pred h---cccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc----------CcceEEEEecCCcc---cchHhhc
Q 022641 141 A---VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYISR---IIEPLAS 204 (294)
Q Consensus 141 ~---~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~----------~~~~ii~~~~~~~~---~~~~l~~ 204 (294)
. .+.............++|+|||++.+++..++.|+..+++.. ....+|++||.... ..+++.+
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld 171 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD 171 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH
Confidence 0 000000000011134699999999999999999999997532 11235777875322 3468999
Q ss_pred ccc-EEEecCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHhhc----------cCc
Q 022641 205 RCA-KFRFKPLSE-EVMSSRVLHIC-----------------------NEEGLNLDAEALSTLSSIS----------QGD 249 (294)
Q Consensus 205 r~~-~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~l~~l~~~~----------~G~ 249 (294)
||. .+.+++|+. ++...++.... ...++.+++++++++++.. +.+
T Consensus 172 RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 172 RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccc
Confidence 987 588889887 66677775432 1235678999999888765 457
Q ss_pred HHHHHHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 250 LRRAITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
+|.++.++..+...+ ...++.+|+. ++..+
T Consensus 252 ~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 252 DRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred hhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 898777777655444 4568999998 55443
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=6.5e-18 Score=145.35 Aligned_cols=206 Identities=20% Similarity=0.204 Sum_probs=135.1
Q ss_pred hhcccHHHHHHHHHHHHc---------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 62 DVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~---------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
.++|++.+++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhcc
Confidence 468999999988887731 133569999999999999999999998 67788777654322
Q ss_pred hhH----HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhhc-----
Q 022641 127 INV----VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETYS----- 183 (294)
Q Consensus 127 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--------------~~~~L~~~l~~~~----- 183 (294)
... ....+......... ......+++|+|||++.++.. .++.|++.|+...
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDY------DVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTT------CHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred cccccccHHHHHHHHHHHhhh------hHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 111 11111221111100 000012359999999988754 8999999998210
Q ss_pred ----------------CcceEEEEecCC----------cc-----------------------------------cchHh
Q 022641 184 ----------------KVTRFFFICNYI----------SR-----------------------------------IIEPL 202 (294)
Q Consensus 184 ----------------~~~~ii~~~~~~----------~~-----------------------------------~~~~l 202 (294)
.+..+|++++.. .. +.++|
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 223345554431 01 57889
Q ss_pred hcccc-EEEecCCCHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHhh---ccCcHHHHHHHHHHHHHHh-
Q 022641 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICN-------EEG--LNLDAEALSTLSSI---SQGDLRRAITYLQGAARLF- 264 (294)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~~~~~~l~~l~~~---~~G~~r~~~~~l~~~~~~~- 264 (294)
.+|+. ++.|.|++.+++.+++.. ++. ..+ +.+++++++.|++. .+|+.|.+.+.++.+....
T Consensus 244 ~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l 323 (363)
T 3hws_A 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTM 323 (363)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHH
Confidence 99998 566899999999888875 322 123 34799999999975 4677888888888766443
Q ss_pred -----C-C----CCChhhhhhhccc
Q 022641 265 -----G-S----SITSKDLISVSGY 279 (294)
Q Consensus 265 -----~-~----~it~~~v~~~~~~ 279 (294)
. . .||.++|+.....
T Consensus 324 ~~~~~~~~~~~~~I~~~~v~~~~~~ 348 (363)
T 3hws_A 324 YDLPSMEDVEKVVIDESVIDGQSEP 348 (363)
T ss_dssp HSTTTCCCSEEEECHHHHTTCCSCC
T ss_pred HhcccccCCceeEEcHHHHhCcCCc
Confidence 1 1 2666676665543
No 75
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.72 E-value=2.7e-17 Score=150.29 Aligned_cols=224 Identities=18% Similarity=0.187 Sum_probs=149.6
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc-----
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----- 125 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~----- 125 (294)
...+++|..+++++|++.+++.+...+..+. +++|+||||||||++|++++..+.+... ..+.+.+....
T Consensus 31 ~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~---~~~~~~~~~~~~~~p~ 105 (604)
T 3k1j_A 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETL---EDILVFPNPEDENMPR 105 (604)
T ss_dssp GGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSC---EEEEEECCTTCTTSCE
T ss_pred CcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccC---CeEEEeCCcccccCCc
Confidence 3457889999999999999999999998775 8999999999999999999997743210 11111100000
Q ss_pred -------chhHHHHHHHH----------------------------------------------HHhhhcc-----cCc-
Q 022641 126 -------GINVVRTKIKT----------------------------------------------FAAVAVG-----SGQ- 146 (294)
Q Consensus 126 -------~~~~~~~~~~~----------------------------------------------~~~~~~~-----~~~- 146 (294)
....+...... +...... .+.
T Consensus 106 i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~ 185 (604)
T 3k1j_A 106 IKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLG 185 (604)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CC
T ss_pred EEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcc
Confidence 00000000000 0000000 000
Q ss_pred -------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc---------------------CcceEEEEecCC--c
Q 022641 147 -------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--S 196 (294)
Q Consensus 147 -------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~---------------------~~~~ii~~~~~~--~ 196 (294)
..+....+.+++|||||++.+++..++.|++.|++.. ..+.+|+++|.. .
T Consensus 186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 186 TPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp CCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred ccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 0011112355699999999999999999999998432 355688889875 5
Q ss_pred ccchHhhcccc----EEEecC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHhhc---cC-------cHHHHH
Q 022641 197 RIIEPLASRCA----KFRFKP---LSEEVMSSRVLHICNEEG-----LNLDAEALSTLSSIS---QG-------DLRRAI 254 (294)
Q Consensus 197 ~~~~~l~~r~~----~i~~~~---~~~~~~~~~l~~~~~~~~-----~~~~~~~l~~l~~~~---~G-------~~r~~~ 254 (294)
.+.++|.+||. .+.|++ ...+.+..+++.++...+ ..++++++..|++++ .| ++|.+.
T Consensus 266 ~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~ 345 (604)
T 3k1j_A 266 KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLG 345 (604)
T ss_dssp HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHH
T ss_pred hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHH
Confidence 68999999995 455543 245667777766655322 568999999999865 56 699999
Q ss_pred HHHHHHHHHh----CCCCChhhhhhhccc
Q 022641 255 TYLQGAARLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 255 ~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (294)
++++.+...+ ...|+.+++.+++..
T Consensus 346 ~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 346 GIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9999877665 456999999888743
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=1.4e-17 Score=157.83 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=137.6
Q ss_pred chhhcccHHHHHHHHHHHHcCC-------C--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHH
Q 022641 60 VKDVAHQEEVVRVLTNTLETAN-------C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (294)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~-------~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (294)
+..++|++..+..+...+.... . .+++|+||||||||++|+++++.+.+. +.+++.++++........
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchhHH
Confidence 3568899999988888775431 1 259999999999999999999998543 346667776654332111
Q ss_pred HHHHHHHHhh-hccc-CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCC--
Q 022641 131 RTKIKTFAAV-AVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-- 195 (294)
Q Consensus 131 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~-- 195 (294)
...+...... .... +..........+++|+|||++.+++..++.|++++++.. .++.+|++||..
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~ 713 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSP 713 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHH
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChH
Confidence 1111000000 0000 000000001224699999999999999999999998653 245588888862
Q ss_pred ------------------------cccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHH
Q 022641 196 ------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALST 241 (294)
Q Consensus 196 ------------------------~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~l~~ 241 (294)
..+.++|.+|+. ++.|.|++.+++..++...+... .+.+++++++.
T Consensus 714 ~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (854)
T 1qvr_A 714 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDF 793 (854)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred HHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHH
Confidence 234577889995 78899999999999998877531 24589999999
Q ss_pred HHhhc---cCcHHHHHHHHHHHHHH
Q 022641 242 LSSIS---QGDLRRAITYLQGAARL 263 (294)
Q Consensus 242 l~~~~---~G~~r~~~~~l~~~~~~ 263 (294)
|++++ .|++|.+.++++.+...
T Consensus 794 L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 794 LAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp HHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred HHHcCCCCCCChHHHHHHHHHHHHH
Confidence 99975 59999999998876544
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.72 E-value=1.6e-16 Score=138.90 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=145.4
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHH-Hc---C---CCCcEEE--ECCCCCCHHHHHHHHHHHhcCCC---ccCCc
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ET---A---NCPHMLF--YGPPGTGKTTTALAIAHQLFGPE---LYKSR 115 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~ill--~Gp~G~GKT~la~~la~~~~~~~---~~~~~ 115 (294)
..++...+.| ..++|++..+..|..++ .. + ....++| +||+|+|||++++.+++.+.... ..+..
T Consensus 12 ~~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 1w5s_A 12 RRVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK 88 (412)
T ss_dssp GGGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCcee
Confidence 3344445555 67899999888888877 42 2 3446888 99999999999999998873210 01234
Q ss_pred ceeecCCCCcchh-HHHHHHHHHHhhhcccCccCCC---------CCCCCcEEEEEeCCCCCC------HHHHHHHHHHH
Q 022641 116 VLELNASDDRGIN-VVRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMT------EDAQNALRRTM 179 (294)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~lliiDei~~l~------~~~~~~L~~~l 179 (294)
++.+++....... .+...+..+.......+..... ....++.+|+|||+|.+. ...+..|+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~ 168 (412)
T 1w5s_A 89 QAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH 168 (412)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH
Confidence 4555543222222 2222211110000000000000 001345699999999974 35566667777
Q ss_pred Hhhc-----CcceEEEEecCCc---ccc---hHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHhh
Q 022641 180 ETYS-----KVTRFFFICNYIS---RII---EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSSI 245 (294)
Q Consensus 180 ~~~~-----~~~~ii~~~~~~~---~~~---~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~l~~~ 245 (294)
.... .++.+|++++.+. .+. +.+.+++. .+.++|++.++..+++...+...+. .++++++..+++.
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 6544 4566777776543 222 44555554 5999999999999999888765433 4789999999999
Q ss_pred cc------CcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 246 SQ------GDLRRAITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 246 ~~------G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
++ |++|.+..++..+...+ ...++.+++..++...
T Consensus 249 ~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 249 YGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99 99999999998766543 3458888887766543
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=6.2e-18 Score=153.53 Aligned_cols=215 Identities=17% Similarity=0.096 Sum_probs=134.8
Q ss_pred CCcchhhcccHHHHHHHHHHHHcCCCC-----------cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETANCP-----------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~~~~-----------~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
..-...++|++.++..+...+..+... +++|+||||||||++|+++++.+....+.. ....++....
T Consensus 291 ~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~--~~~~~~~~l~ 368 (595)
T 3f9v_A 291 SSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTT--GKGSTAAGLT 368 (595)
T ss_dssp HHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCC--TTCSTTTTSE
T ss_pred HhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecC--CCcccccccc
Confidence 333457889999988887777665311 799999999999999999998762111000 0001111110
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-------------CcceEEEEe
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFIC 192 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~ 192 (294)
. ...... .........+....+.+++|+|||++.+++..++.|++.|++.. ..+.+|.++
T Consensus 369 ~-~~~~~~------~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaat 441 (595)
T 3f9v_A 369 A-AVVREK------GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG 441 (595)
T ss_dssp E-ECSSGG------GTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEE
T ss_pred c-eeeecc------ccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEc
Confidence 0 000000 00000000111111234699999999999999999999998533 355688888
Q ss_pred cCCc-------------ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHh-------------------------CCC
Q 022641 193 NYIS-------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE-------------------------GLN 233 (294)
Q Consensus 193 ~~~~-------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~ 233 (294)
|... .+++++++||. .+.+.+++..+...+.++++..+ ...
T Consensus 442 Np~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ 521 (595)
T 3f9v_A 442 NPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPK 521 (595)
T ss_dssp CCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCC
T ss_pred CCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCC
Confidence 8765 78899999995 44454544443555555544322 225
Q ss_pred CCHHHHHHHHhh---------------ccCcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 234 LDAEALSTLSSI---------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 234 ~~~~~l~~l~~~---------------~~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
+++++.+.|.+. .++++|.+..++..+...+ +..++.+|+..++...
T Consensus 522 ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 522 ITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 666666666665 4678999888888766555 5679999999887643
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.67 E-value=4.3e-16 Score=116.15 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=92.5
Q ss_pred hhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHh
Q 022641 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
+++|+...+..+...+.. ....+++|+||||||||++|+++++.... .+.+++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~---~~~~~v-~~~~~~~~~~~~~~~~~~a-- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN---AQGEFV-YRELTPDNAPQLNDFIALA-- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT---TTSCCE-EEECCTTTSSCHHHHHHHH--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc---cCCCEE-EECCCCCcchhhhcHHHHc--
Confidence 567888888777776643 34457999999999999999999886522 134566 7666543332222222211
Q ss_pred hhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc-------ccchHhhcccc--EEE
Q 022641 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------RIIEPLASRCA--KFR 210 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~-------~~~~~l~~r~~--~i~ 210 (294)
..++|+|||++.++...+..|+..+...+....+|++||.+. .+.+.+..|+. .|.
T Consensus 76 ---------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~ 140 (145)
T 3n70_A 76 ---------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
T ss_dssp ---------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEE
T ss_pred ---------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEe
Confidence 124899999999999999999999988777888999998653 34566777765 677
Q ss_pred ecCC
Q 022641 211 FKPL 214 (294)
Q Consensus 211 ~~~~ 214 (294)
++|+
T Consensus 141 lPpL 144 (145)
T 3n70_A 141 CLPL 144 (145)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7775
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.65 E-value=2.8e-15 Score=124.95 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=97.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
..++|+||||||||++|+++++++ +.+++.++++.... ...+...+........ ...+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~----------~~~~ 100 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR----------KGNM 100 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT----------TSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh----------cCCC
Confidence 358999999999999999999999 77888887644322 1122222222211100 1224
Q ss_pred EEEEEeCCCCCCH-------------HHHHHHHHHHHh-------------hcCcceEEEEecCCcccchHhhc--cccE
Q 022641 157 KIIILDEADSMTE-------------DAQNALRRTMET-------------YSKVTRFFFICNYISRIIEPLAS--RCAK 208 (294)
Q Consensus 157 ~lliiDei~~l~~-------------~~~~~L~~~l~~-------------~~~~~~ii~~~~~~~~~~~~l~~--r~~~ 208 (294)
.+|+|||+|.+.. ..++.|+++++. ....+.+|+|||.+..+++++++ ||..
T Consensus 101 ~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~ 180 (293)
T 3t15_A 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180 (293)
T ss_dssp CCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEE
T ss_pred eEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCce
Confidence 5999999998754 234778888762 12457799999999999999986 7764
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh-ccCcHH
Q 022641 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI-SQGDLR 251 (294)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~-~~G~~r 251 (294)
+.+ .|+.+++.++++.++...+ ++.+.+..+... ++.++.
T Consensus 181 ~i~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 181 FYW-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp EEE-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred eEe-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 333 4599999999998887554 556666665554 455554
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.64 E-value=1.4e-14 Score=125.72 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=88.9
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhh----------cCcceEEEEe----cCCcccchHhhccccE
Q 022641 155 PYKIIILDEADSMTE------------DAQNALRRTMETY----------SKVTRFFFIC----NYISRIIEPLASRCAK 208 (294)
Q Consensus 155 ~~~lliiDei~~l~~------------~~~~~L~~~l~~~----------~~~~~ii~~~----~~~~~~~~~l~~r~~~ 208 (294)
.+.++++||+|.+.. ..++.|+++++.. ..++.+|+++ +.+..+.++|++|+.+
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 356999999998842 2677999999852 2345566666 2444566899999995
Q ss_pred -EEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHhh--------ccCcHHHHHHHHHHHHHHh--
Q 022641 209 -FRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSI--------SQGDLRRAITYLQGAARLF-- 264 (294)
Q Consensus 209 -i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~l~~~--------~~G~~r~~~~~l~~~~~~~-- 264 (294)
+.|++++.++...++.. .+..++. .++++++..|++. -++..|.+.+.++.+....
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 89999999999999831 2222343 4899999999985 2456677666666544322
Q ss_pred ---C---C--CCChhhhhhhcccccC
Q 022641 265 ---G---S--SITSKDLISVSGYPTG 282 (294)
Q Consensus 265 ---~---~--~it~~~v~~~~~~~~~ 282 (294)
+ . .||.+.+...++....
T Consensus 410 ~~~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 410 SASDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp HGGGCTTCEEEECHHHHHHHHTTTTT
T ss_pred hccccCCCeEEEeHHHHHHhcCcccc
Confidence 1 1 3888888888776543
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.62 E-value=8.8e-16 Score=114.18 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=87.7
Q ss_pred hhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHh
Q 022641 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
+++|+...+..+.+.+.. ....+++|+||||||||++|+++++.. . +++.+++....... ....+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~~~-~~~~~~~--- 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLIDM-PMELLQK--- 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHHHC-HHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCChHh-hhhHHHh---
Confidence 567887777777776643 344579999999999999999998765 2 67777776532211 1111111
Q ss_pred hhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-CcceEEEEecCCc-c----cchHhhcccc--EEEe
Q 022641 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTRFFFICNYIS-R----IIEPLASRCA--KFRF 211 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~~-~----~~~~l~~r~~--~i~~ 211 (294)
.+.++|+|||++.++...+..|++.++... ..+++|++||... . +.+.+..|+. .|.+
T Consensus 74 --------------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~l 139 (143)
T 3co5_A 74 --------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRI 139 (143)
T ss_dssp --------------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEE
T ss_pred --------------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeC
Confidence 112499999999999999999999998764 4577888887542 2 4456677765 5777
Q ss_pred cCC
Q 022641 212 KPL 214 (294)
Q Consensus 212 ~~~ 214 (294)
+|+
T Consensus 140 PpL 142 (143)
T 3co5_A 140 PPL 142 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.61 E-value=1e-17 Score=157.24 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=108.8
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...|+++.|.+.+++.+...+.. ....+++|+||||||||++|++++..+ +..++.++++.
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~------~~~~i~v~~~~ 546 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPE 546 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH------TCCCCCCCCSS
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh------CCCEEEEechH
Confidence 44678899999999888877642 123459999999999999999999998 56666666655
Q ss_pred Ccc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhhc
Q 022641 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS 183 (294)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--------------~~~~~~L~~~l~~~~ 183 (294)
..+ ...+...+....... +.+|+|||+|.+. ...++.|+..++...
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~--------------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAA--------------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHC--------------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred hhhhhcCccHHHHHHHHHHHHhcC--------------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 322 223333444333222 2499999998762 123455555554322
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNE 229 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 229 (294)
..+.+|++||.+..+++++++ ||. .+.+++|+.++...+++.+++.
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 356688889999999999998 997 8999999999999999877643
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.61 E-value=1.5e-14 Score=125.01 Aligned_cols=211 Identities=19% Similarity=0.215 Sum_probs=139.9
Q ss_pred hhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHH
Q 022641 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
..++|....+..+.+.+.. ....+++|+|++||||+++|+.+..... ....+++.+++..... ..+...+-...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~---r~~~~fv~v~~~~~~~-~~~~~elfg~~ 212 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD---RSKEPFVALNVASIPR-DIFEAELFGYE 212 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST---TTTSCEEEEETTTSCH-HHHHHHHHCBC
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcC---CCCCCeEEEecCCCCH-HHHHHHhcCCC
Confidence 4567776666666555543 2223599999999999999999987642 2346788888886532 22221111110
Q ss_pred hhhc-cc-CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------cc
Q 022641 139 AVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (294)
Q Consensus 139 ~~~~-~~-~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~ 198 (294)
.... +. ....+....+..+.|+|||++.++...+..|++.+++.. ..+++|++||... ..
T Consensus 213 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 213 KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 0000 00 011111223456799999999999999999999998632 3567888888642 24
Q ss_pred chHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh-C
Q 022641 199 IEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-G 265 (294)
Q Consensus 199 ~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~-~ 265 (294)
.+.+..|+. .+.++|+.. +++..++.+.+. +.+. .+++++++.+..+ +.||+|++.+.++.++... +
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~ 372 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG 372 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 556667765 577777754 666666655543 3343 3799999999987 5999999999999998876 4
Q ss_pred CCCChhhhhh
Q 022641 266 SSITSKDLIS 275 (294)
Q Consensus 266 ~~it~~~v~~ 275 (294)
..|+.+++..
T Consensus 373 ~~i~~~~l~~ 382 (387)
T 1ny5_A 373 KFIDRGELSC 382 (387)
T ss_dssp SEECHHHHHH
T ss_pred CcCcHHHCcH
Confidence 4588777754
No 85
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.59 E-value=1.5e-14 Score=124.05 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=131.8
Q ss_pred hhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHh
Q 022641 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
.++|.......+...+.. .....++++|++||||+.+|+++....... ..++.+++............+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~----~~fv~vnc~~~~~~~~~~~lfg~~~g 205 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK----GAFVDLNCASIPQELAESELFGHEKG 205 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC----SCEEEEESSSSCTTTHHHHHHEECSC
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc----CCcEEEEcccCChHHHHHHhcCcccc
Confidence 466776665555544432 223459999999999999999998776221 22888888875432221111111000
Q ss_pred hhccc-CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------ccch
Q 022641 140 VAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RIIE 200 (294)
Q Consensus 140 ~~~~~-~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~~~ 200 (294)
...+. ..+.+....+..+.|+|||++.++...+..|++.+++.. ..+++|.+||... ...+
T Consensus 206 ~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~ 285 (368)
T 3dzd_A 206 AFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFRE 285 (368)
T ss_dssp SSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred ccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH
Confidence 00000 001111122455799999999999999999999998643 2466888887542 2445
Q ss_pred Hhhcccc--EEEecCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh
Q 022641 201 PLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (294)
Q Consensus 201 ~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~---~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~ 264 (294)
.+..|+. .|.++|+.. +++..++.+.+.+ .+ ..+++++++.|..+. +||+|++.|.++.++...
T Consensus 286 dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 286 DLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 6778877 577888876 6777666665543 33 348999999999985 999999999999988765
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.58 E-value=1.5e-13 Score=117.31 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=120.5
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc------chhHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRT 132 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (294)
....++|++..+..|..++..+ +.++|+||+|+|||++++.+++.. + ++.+++.... +...+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHHH
Confidence 4467899999999999998875 589999999999999999999875 2 3333322110 1111111
Q ss_pred HHHH-HHh------h--------hcccCccCCCC----------C-CCCcEEEEEeCCCCCCH-------HHHHHHHHHH
Q 022641 133 KIKT-FAA------V--------AVGSGQRRGGY----------P-CPPYKIIILDEADSMTE-------DAQNALRRTM 179 (294)
Q Consensus 133 ~~~~-~~~------~--------~~~~~~~~~~~----------~-~~~~~lliiDei~~l~~-------~~~~~L~~~l 179 (294)
.+.. +.. . ........... . ..++.+|+|||+|.+.. .....|...+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 1111 000 0 00000000000 0 00256999999999753 4455555555
Q ss_pred HhhcCcceEEEEecCCccc---------chHhhccc-cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc
Q 022641 180 ETYSKVTRFFFICNYISRI---------IEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (294)
Q Consensus 180 ~~~~~~~~ii~~~~~~~~~---------~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~ 249 (294)
+.. .+..+|+++.....+ ...+..|. ..+.+.|++.++..+++...+...+..++++.+..+++.++|+
T Consensus 160 ~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 543 466777777543211 11233354 4899999999999999998887778889999999999999999
Q ss_pred HHHHHHHHH
Q 022641 250 LRRAITYLQ 258 (294)
Q Consensus 250 ~r~~~~~l~ 258 (294)
|..+..+..
T Consensus 239 P~~l~~~~~ 247 (350)
T 2qen_A 239 PGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 986655443
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.55 E-value=2.2e-14 Score=134.73 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=124.1
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
...+..|++++|++..++.|.+++.. ....+++|+||||||||++|++++..+ +..++.++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l------~~~~i~v~ 270 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT------TCEEEEEE
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCcEEEEE
Confidence 45567899999999999888888753 233469999999999999999999987 56667776
Q ss_pred CCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhc
Q 022641 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS 183 (294)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~ 183 (294)
+.+... ...+...+...... .+.+++|||++.+. ....+.|+..++...
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~--------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKN--------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHH--------------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhc--------------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Confidence 543221 12222233322221 13599999998763 234567777777543
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~ 252 (294)
..+.+|+++|.+..+++.+.+ ||. .+.+..|+.++..++++.++....+ .++..+..++..+.|....
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCTHHHHHSCSSCCHH
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchhHHHHHhhcCcchH
Confidence 356678888998888888887 786 7899999999999999877654322 2333466777777665433
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.48 E-value=6.8e-14 Score=108.16 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=79.7
Q ss_pred hhcCCCcchhhcc----cHHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 53 EKYRPKQVKDVAH----QEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 53 ~~~~~~~~~~~~g----~~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
++|++.+|+++++ ++.++..+..++... ...+++|+||+|+||||++++++..+.... +..++.++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~---- 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDT---- 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEH----
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEH----
Confidence 4678888888875 455556666666542 245699999999999999999999873111 112222221
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHHHhhc-CcceEEEEecCCcc
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYISR 197 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~--~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~~~ 197 (294)
..+...+......... ........+.++|+|||++ .+++.....|..+++... ....+|++||....
T Consensus 76 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 76 --KDLIFRLKHLMDEGKD---TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp --HHHHHHHHHHHHHTCC---SHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred --HHHHHHHHHHhcCchH---HHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 1111111111100000 0000001134699999998 567777788888887654 55678888887653
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.2e-12 Score=112.00 Aligned_cols=188 Identities=17% Similarity=0.141 Sum_probs=116.4
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC-----cchhHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 133 (294)
....++|++..+..|.. +.. +.++|+||+|+|||++++.+++.+ ...++.+++... .+.......
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL------NLPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH------TCCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc------CCCEEEEEchhhccccCCCHHHHHHH
Confidence 34678999999999988 765 589999999999999999999987 223344443321 121111111
Q ss_pred HHHHHhh-----------hc-------cc-Ccc------CCCC---------CCC-CcEEEEEeCCCCCCH----HHHHH
Q 022641 134 IKTFAAV-----------AV-------GS-GQR------RGGY---------PCP-PYKIIILDEADSMTE----DAQNA 174 (294)
Q Consensus 134 ~~~~~~~-----------~~-------~~-~~~------~~~~---------~~~-~~~lliiDei~~l~~----~~~~~ 174 (294)
+...... .. .. ... .... ... ++.+|+|||+|.+.. .....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 1111100 00 00 000 0000 001 367999999999753 33444
Q ss_pred HHHHHHhhcCcceEEEEecCCccc---------chHhhccc-cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 022641 175 LRRTMETYSKVTRFFFICNYISRI---------IEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (294)
Q Consensus 175 L~~~l~~~~~~~~ii~~~~~~~~~---------~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 244 (294)
|....+.. ....+|++++....+ ...+..|+ ..+.+.|++.++..+++...+...+...++. ..+++
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 54454442 466788887653211 11244454 5899999999999999998887667766554 88899
Q ss_pred hccCcHHHHHHHHHH
Q 022641 245 ISQGDLRRAITYLQG 259 (294)
Q Consensus 245 ~~~G~~r~~~~~l~~ 259 (294)
.++|+|..+..++..
T Consensus 238 ~t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 238 KIGGIPGWLTYFGFI 252 (357)
T ss_dssp HHCSCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHH
Confidence 999999876655443
No 90
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.41 E-value=1.1e-12 Score=113.22 Aligned_cols=215 Identities=14% Similarity=0.070 Sum_probs=133.6
Q ss_pred hhcCCCcchhhcccHHHHHHHHHHHHcCC-----CCcEEEECCCCCCHHHHHHHH-HHHhcCCCccCCcceeecCCCCcc
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAI-AHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-----~~~ill~Gp~G~GKT~la~~l-a~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
+.+...-.. +.|++.++..+.-.+..+. .-|++|.|+||| ||.+|+.+ ++.+ ........ ...+
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-------pR~~ft~g-~~ss 275 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-------PRGVYVDL-RRTE 275 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-------SSEEEEEG-GGCC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-------CCeEEecC-CCCC
Confidence 344333334 8899998888887776653 126999999999 99999999 5543 11111111 0001
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh---------cCcceEEEEecCCc-
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------SKVTRFFFICNYIS- 196 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~---------~~~~~ii~~~~~~~- 196 (294)
...+ ...... ..+.....+....+..++|+|||++.+++..+..|++.|++. +..+.+|.++|...
T Consensus 276 ~~gL---t~s~r~-~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 276 LTDL---TAVLKE-DRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp HHHH---SEEEEE-SSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred ccCc---eEEEEc-CCCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 0000 000000 001111223333455679999999999999999999999963 46677888888753
Q ss_pred ----------ccchHhhccccEEE--ec-------------CCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHhhc----
Q 022641 197 ----------RIIEPLASRCAKFR--FK-------------PLSEEVMSSRVLHIC-NEEGLNLDAEALSTLSSIS---- 246 (294)
Q Consensus 197 ----------~~~~~l~~r~~~i~--~~-------------~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~---- 246 (294)
.++.++++||..+. +. .++.+++++++...- ..-.+.+++++.++|.+..
T Consensus 352 yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR 431 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRR 431 (506)
T ss_dssp -CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHh
Confidence 68889999996332 22 234455555554333 1225678898877776531
Q ss_pred --------------cCcHHHHHHHHHHHHHHh----CCCCChhhhhhhccccc
Q 022641 247 --------------QGDLRRAITYLQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 247 --------------~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
+-.+|.+..++..+-..+ +..++.+|+..++.-..
T Consensus 432 ~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 432 EEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 235677777766555444 56799999998876543
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.35 E-value=9.7e-13 Score=98.13 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccC
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (294)
+..++..+..+ ....++|+||+|+|||+++++++..+... +..++.++..+.... .+
T Consensus 24 n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~--------~~-------- 80 (149)
T 2kjq_A 24 NAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT--------DA-------- 80 (149)
T ss_dssp THHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC--------GG--------
T ss_pred cHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH--------HH--------
Confidence 34444444333 44579999999999999999999988432 334555555443322 00
Q ss_pred ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCc-ce-EEEEecCCcc-c--chHhhcccc
Q 022641 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-TR-FFFICNYISR-I--IEPLASRCA 207 (294)
Q Consensus 146 ~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~-~~-ii~~~~~~~~-~--~~~l~~r~~ 207 (294)
..+.++|+|||++.+....++.|+.+++..... .. +|++++.+.. + .+.+.+|+.
T Consensus 81 -------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 81 -------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp -------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred -------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 012359999999999876688888888765543 33 7788875322 1 288899886
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.32 E-value=2.4e-12 Score=107.76 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=71.4
Q ss_pred hhhcCCCcchhhccc----HHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHHHhc-CCCccCCcceeecCCC
Q 022641 52 VEKYRPKQVKDVAHQ----EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD 123 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~----~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~ 123 (294)
.+.+.+.+|+++.+. ..+...+..++... ...+++|+||||||||++|.++++.+. .. +..+..++.+.
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~~~ 191 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHFPS 191 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEHHH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEHHH
Confidence 345667788888752 33455666777653 245799999999999999999999884 22 12333332211
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--HHH-HHHHHHHhh-cCcceEEEEecCC
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQN-ALRRTMETY-SKVTRFFFICNYI 195 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--~~~-~L~~~l~~~-~~~~~ii~~~~~~ 195 (294)
.+..+.................+.++|||||++..+.. .++ .|..+++.. .....+|++||.+
T Consensus 192 ---------l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 192 ---------FAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp ---------HHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred ---------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 11111110000000000000123459999999765432 233 333466654 3456789999854
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=1.7e-11 Score=125.93 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=101.5
Q ss_pred HHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcc-cCccCCCC
Q 022641 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-SGQRRGGY 151 (294)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 151 (294)
+..++..+ .+++|+||||||||++|+.+.... .+..+..++.+...+...+...+......... .+..-+..
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC
Confidence 34444444 379999999999999996665543 14566677777776665555544443221100 00000001
Q ss_pred CCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhhc------------CcceEEEEecCC-----cccchHhhccccE
Q 022641 152 PCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRCAK 208 (294)
Q Consensus 152 ~~~~~~lliiDei~~l~~------~~~~~L~~~l~~~~------------~~~~ii~~~~~~-----~~~~~~l~~r~~~ 208 (294)
..+++.||+|||++.... ...+.|.+.++... .++.+|.++|++ ..+++++.+||.+
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence 134567999999876432 36788888887422 235678888887 4689999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHh
Q 022641 209 FRFKPLSEEVMSSRVLHICNEE 230 (294)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~ 230 (294)
+.+++|+.+.+..|+..++...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999888643
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.26 E-value=3.5e-12 Score=100.30 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=72.0
Q ss_pred hhhhcCCCcchhhccc----HHHHHHHHHHHHcCC----CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 51 WVEKYRPKQVKDVAHQ----EEVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~----~~~~~~l~~~l~~~~----~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
+.+++.+.+|+++++. ..++..+..++.... ..+++|+||+|||||++++++++.+... +..++.+++.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~ 91 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVP 91 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhH
Confidence 3456777888888863 235566677776542 1579999999999999999999988432 2233333322
Q ss_pred CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--HHHHHH-HHHHhh-cCcceEEEEecCC
Q 022641 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALR-RTMETY-SKVTRFFFICNYI 195 (294)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--~~~~L~-~~l~~~-~~~~~ii~~~~~~ 195 (294)
. +...+..... ............+.++|+|||++..... .+..++ .+++.. .....+|++||..
T Consensus 92 ~------~~~~~~~~~~---~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 92 E------LFRELKHSLQ---DQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp H------HHHHHHHC------CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred H------HHHHHHHHhc---cchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1 0000000000 0000000000001249999999876433 233233 455544 3556788888854
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.21 E-value=1.1e-10 Score=94.17 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=85.4
Q ss_pred HHHHHHHHcC-CC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccC
Q 022641 71 RVLTNTLETA-NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (294)
Q Consensus 71 ~~l~~~l~~~-~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (294)
..+..|+... .. ..++|+||||||||+++.++++.+. . .-.++..+. .+....
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~------l-~G~vn~~~~-----------~f~l~~------- 145 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP------F-YGCVNWTNE-----------NFPFND------- 145 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS------C-EEECCTTCS-----------SCTTGG-------
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc------c-cceeecccc-----------cccccc-------
Confidence 4566677654 32 3499999999999999999999751 1 111121110 000000
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH--------hhc-----CcceEEEEecCC-----------cccchHhhc
Q 022641 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME--------TYS-----KVTRFFFICNYI-----------SRIIEPLAS 204 (294)
Q Consensus 149 ~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~--------~~~-----~~~~ii~~~~~~-----------~~~~~~l~~ 204 (294)
.....+++.||..... +..+.+..+++ ... ....+|++||.. ....+.|.+
T Consensus 146 ----~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s 220 (267)
T 1u0j_A 146 ----CVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD 220 (267)
T ss_dssp ----GSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT
T ss_pred ----ccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh
Confidence 0112377777776654 44556777776 222 456789999862 134578999
Q ss_pred cccEEEec--------CCCHHHHHHHHHHHHHHhCCCCC
Q 022641 205 RCAKFRFK--------PLSEEVMSSRVLHICNEEGLNLD 235 (294)
Q Consensus 205 r~~~i~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 235 (294)
|+..+.|. +++.++++.++... +.+..+++
T Consensus 221 R~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 221 RMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp TEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred hEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 99999998 89999999999844 66666554
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.17 E-value=9.2e-11 Score=90.47 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCc
Q 022641 68 EVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (294)
..+..+..++..... .+++|+||||||||++|.++++.+. ..++.+..+.. .. . .. .
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~------g~i~~fans~s-~f--~-------l~-~----- 100 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ------GAVISFVNSTS-HF--W-------LE-P----- 100 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT------CEECCCCCSSS-CG--G-------GG-G-----
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC------CCeeeEEeccc-hh--h-------hc-c-----
Confidence 345666666664322 3599999999999999999999882 22222111100 00 0 00 0
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhhc-------------CcceEEEEecCC---cccchHhhccccEE
Q 022641 147 RRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKF 209 (294)
Q Consensus 147 ~~~~~~~~~~~lliiDei~~l~~~~-~~~L~~~l~~~~-------------~~~~ii~~~~~~---~~~~~~l~~r~~~i 209 (294)
..+..+++|||++.-.... ...+..+++..+ ....+|+|||.. ....+.+.+|+..+
T Consensus 101 ------l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f 174 (212)
T 1tue_A 101 ------LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVF 174 (212)
T ss_dssp ------GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEE
T ss_pred ------cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEE
Confidence 0112499999998532222 235666666532 134699999974 33456899999988
Q ss_pred EecC-------------CCHHHHHHHHHHHHH
Q 022641 210 RFKP-------------LSEEVMSSRVLHICN 228 (294)
Q Consensus 210 ~~~~-------------~~~~~~~~~l~~~~~ 228 (294)
.|+. ++....+.++++...
T Consensus 175 ~F~~~~p~~~~g~p~~~~~~~~wk~ff~~~~~ 206 (212)
T 1tue_A 175 EFPNAFPFDKNGNPVYEINDKNWKCFFERTWS 206 (212)
T ss_dssp ECCSCCCBCTTSCBSCCCCHHHHHHHHHHHTG
T ss_pred EcCCCCCCCCCCCeeEEeCcchHHHHHHHHHH
Confidence 7762 234566666665553
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.17 E-value=3e-09 Score=109.65 Aligned_cols=169 Identities=22% Similarity=0.250 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCcc
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (294)
+....+..++..+. ..++.||+|||||++++.+|+.+ +..++.+++++......+...+..+....
T Consensus 633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~G------ 698 (2695)
T 4akg_A 633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQIG------ 698 (2695)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhcC------
Confidence 33345555565554 58999999999999999999999 89999999999888877766665555432
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-------hh-------------cCcceEEEEecC----CcccchHhh
Q 022641 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTME-------TY-------------SKVTRFFFICNY----ISRIIEPLA 203 (294)
Q Consensus 148 ~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~-------~~-------------~~~~~ii~~~~~----~~~~~~~l~ 203 (294)
..+++||+++++++.+..+.+.+. .. ...+.+++|.|+ ...+++++.
T Consensus 699 ---------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk 769 (2695)
T 4akg_A 699 ---------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLK 769 (2695)
T ss_dssp ---------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHH
T ss_pred ---------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHH
Confidence 389999999999987777643332 21 234557777774 346899999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHh-------h------ccCcHHHHHHHHHHHHH
Q 022641 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-------I------SQGDLRRAITYLQGAAR 262 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~-------~------~~G~~r~~~~~l~~~~~ 262 (294)
+||..+.+..|+.+.+.+++.. ..|....+.....++. . .+..+|.+..+|..+..
T Consensus 770 ~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 770 KSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp TTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred hheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 9999999999999888887643 3455444444433332 1 12367777777765543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.15 E-value=6.6e-11 Score=104.67 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=80.1
Q ss_pred cCCchhhhhcCCCcchhhc-ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 46 QSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
..+.||.++|+|..++++. +|..++..+..++..+.. +++|.|+||||||+++..++..+..... ..++.+ +...
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~-a~T~ 84 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--TGIILA-APTH 84 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEE-ESSH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEe-cCcH
Confidence 4567999999999999987 788888888888877653 8999999999999999999998854322 122222 2222
Q ss_pred cchhHHHHHH-------HHHHhhhcccCc------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEE
Q 022641 125 RGINVVRTKI-------KTFAAVAVGSGQ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (294)
Q Consensus 125 ~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~ 191 (294)
.....+...+ ..+......... ........+.++|+|||++.++...+..|+..+. ....++++
T Consensus 85 ~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~v 161 (459)
T 3upu_A 85 AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGI 161 (459)
T ss_dssp HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEE
T ss_pred HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEE
Confidence 2222222111 011110000000 0111223456799999999999888887777653 45567777
Q ss_pred ecC
Q 022641 192 CNY 194 (294)
Q Consensus 192 ~~~ 194 (294)
+..
T Consensus 162 GD~ 164 (459)
T 3upu_A 162 GDN 164 (459)
T ss_dssp ECT
T ss_pred CCH
Confidence 744
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.05 E-value=1.6e-09 Score=112.45 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=101.3
Q ss_pred HHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhccc--CccCCC
Q 022641 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGG 150 (294)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 150 (294)
+..++..+. +++|+||+|||||.++..+...+. +..++.++.+.......+...+.......... +...+.
T Consensus 1297 l~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1297 LHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp HHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred HHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCC
Confidence 344455444 699999999999998876654441 34567788888777666655554322211110 100000
Q ss_pred CCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhhc------------CcceEEEEecCC-----cccchHhhcccc
Q 022641 151 YPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRCA 207 (294)
Q Consensus 151 ~~~~~~~lliiDei~~l~~------~~~~~L~~~l~~~~------------~~~~ii~~~~~~-----~~~~~~l~~r~~ 207 (294)
...++..|++|||++.-.. ...+.|.++++... .++.+|.++|++ ..+.+++.+||.
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Confidence 1125567999999987543 37888999988532 234577788876 358899999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHH
Q 022641 208 KFRFKPLSEEVMSSRVLHICNE 229 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~ 229 (294)
++.++.|+.+.+..|+..++..
T Consensus 1450 vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998776653
No 100
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.04 E-value=8.8e-09 Score=94.07 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=107.5
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcC-CCccCCcceeecCCCCcchhHHHH
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
-|.....++|++..+..|..++.. +..+.++|+||+|+|||++|..+++.... ...+...++.++.+.. ....+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 355667899999999999999974 23345999999999999999998743200 0001111222222221 1111111
Q ss_pred HHHHHHhhhcc-cC--ccCCCC-------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 133 KIKTFAAVAVG-SG--QRRGGY-------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 133 ~~~~~~~~~~~-~~--~~~~~~-------------~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.+..+...... .. ...... ...++-+|||||++.. . .++.......+|+||+...
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCcH
Confidence 12111111100 00 000000 0013569999999762 1 2334466778888887654
Q ss_pred ccchHhhccccEEE-ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 197 RIIEPLASRCAKFR-FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 197 ~~~~~l~~r~~~i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
... ........+. +.+++.++..+++...+... ..-.++....|++.|+|.|-.+..+...+.
T Consensus 269 ~~~-~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l~ 332 (591)
T 1z6t_A 269 VTD-SVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALLR 332 (591)
T ss_dssp GGT-TCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-hcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 211 1111111222 25899999999998776321 111246788899999999877665555443
No 101
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.95 E-value=1.1e-08 Score=92.39 Aligned_cols=182 Identities=11% Similarity=0.083 Sum_probs=102.6
Q ss_pred cccHHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHH---HhcCCCccCCcceeecCCCCc--ch-hHHHHHH
Q 022641 64 AHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAH---QLFGPELYKSRVLELNASDDR--GI-NVVRTKI 134 (294)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~---~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 134 (294)
+|++..+..|.+++... ..+.+.|+|+.|+|||+||..+++ ......+....++ +.+... +. ......+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv--~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL--KDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE--ECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE--EECCCCCCCHHHHHHHHH
Confidence 49999999999998655 334589999999999999999997 2222222222222 333321 11 2222222
Q ss_pred HHHHhhhc-ccCccCCC------------CCCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccch
Q 022641 135 KTFAAVAV-GSGQRRGG------------YPCPP-YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (294)
Q Consensus 135 ~~~~~~~~-~~~~~~~~------------~~~~~-~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~ 200 (294)
..+..... ........ ....+ +-+||||+++.... . .+. . .....||+||+...- ..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~~----~-~~gs~ilvTTR~~~v-~~ 279 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RWA----Q-ELRLRCLVTTRDVEI-SN 279 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HHH----H-HTTCEEEEEESBGGG-GG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-ccc----c-cCCCEEEEEcCCHHH-HH
Confidence 22211100 00000000 11233 78999999988421 1 111 1 155678888875431 11
Q ss_pred HhhccccEEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhhccCcHHHHHHH
Q 022641 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRRAITY 256 (294)
Q Consensus 201 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~l~~~~~G~~r~~~~~ 256 (294)
........+.+.+++.++..+++.+.+..... .-.++....|++.|+|.|=.+..+
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 11112246999999999999999766421111 111345778999999988665544
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.87 E-value=2.6e-07 Score=96.32 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=119.7
Q ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCC
Q 022641 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (294)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
..|..++.... ...+.||+|||||.+++.+|+.+ +..++.++|++......+...+..+....
T Consensus 595 ~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~G--------- 657 (3245)
T 3vkg_A 595 LTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQCG--------- 657 (3245)
T ss_dssp HHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhcC---------
Confidence 44555555444 46799999999999999999999 89999999999888777766665555432
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh---------------------hcCcceEEEEecC----CcccchHhhcc
Q 022641 151 YPCPPYKIIILDEADSMTEDAQNALRRTMET---------------------YSKVTRFFFICNY----ISRIIEPLASR 205 (294)
Q Consensus 151 ~~~~~~~lliiDei~~l~~~~~~~L~~~l~~---------------------~~~~~~ii~~~~~----~~~~~~~l~~r 205 (294)
..+++||+++++.+....+.+.+.. ....+.+++|.|+ ...+++.+..+
T Consensus 658 ------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~l 731 (3245)
T 3vkg_A 658 ------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKL 731 (3245)
T ss_dssp ------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTT
T ss_pred ------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhh
Confidence 2889999999999887776665541 1124557777774 34689999999
Q ss_pred ccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHh---h----------ccCcHHHHHHHHHHHHHHh
Q 022641 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---I----------SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~---~----------~~G~~r~~~~~l~~~~~~~ 264 (294)
|..+.+..|+.+.+.+++. -..|..-.......+.. . .+-.+|.+..+|..|....
T Consensus 732 Fr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lk 800 (3245)
T 3vkg_A 732 FRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIK 800 (3245)
T ss_dssp EEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999998888863 34555433333333332 1 2235888888887666543
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.83 E-value=1.4e-07 Score=93.09 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=111.8
Q ss_pred CCCcchhhcccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHh--cCCCccCCcceeecCCCCcchhHHH
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
-|.....++|++..+..|.+.+... ..+.+.|+|+.|+|||+||..+++.. ....+ ...++-++.+...... ..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF-SGGVHWVSIGKQDKSG-LL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS-TTCEEEEECCSCCHHH-HH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC-CCeEEEEEECCcCchH-HH
Confidence 4555667999999999999999643 33458999999999999999887653 11111 2222233333221111 11
Q ss_pred HHHHHHHhhhcccCc---c-CC------------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 132 TKIKTFAAVAVGSGQ---R-RG------------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~---~-~~------------~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
..+..+......... . .. .....++-+||||+++.. . .++.......+|+||+..
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCCH
Confidence 112211111110000 0 00 000123679999999863 1 233345677888888765
Q ss_pred cccchHhhccccEEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 196 SRIIEPLASRCAKFRFKP-LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 196 ~~~~~~l~~r~~~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
.-. .........+.+.+ ++.++..+++...+... ..-.++....|++.|+|.|=.+..+...+.
T Consensus 268 ~~~-~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~glPLal~~~~~~l~ 332 (1249)
T 3sfz_A 268 SVT-DSVMGPKHVVPVESGLGREKGLEILSLFVNMK-KEDLPAEAHSIIKECKGSPLVVSLIGALLR 332 (1249)
T ss_dssp TTT-TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-STTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHH-HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-hhhCcHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 321 12223334788886 99999999998766322 122245688899999998876655554443
No 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.81 E-value=1.3e-07 Score=89.47 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=94.7
Q ss_pred cccHHHHHHHHHHHHc-CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhc
Q 022641 64 AHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (294)
Q Consensus 64 ~g~~~~~~~l~~~l~~-~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (294)
+|++..+..|.+++.. ...+.+.|+|+.|+|||+||..+++...-...+...++-++.+.......+...+........
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 8999999999999876 334569999999999999999998642001111222222333332222222122221111100
Q ss_pred cc-CccC-----------------C---CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchH
Q 022641 143 GS-GQRR-----------------G---GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (294)
Q Consensus 143 ~~-~~~~-----------------~---~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~ 201 (294)
.. .... . .....++-+|||||++. ...+.. ++....+|+||+...... .
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~-------f~pGSRILVTTRd~~Va~-~ 280 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA-------FNLSCKILLTTRFKQVTD-F 280 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH-------HHSSCCEEEECSCSHHHH-H
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh-------hCCCeEEEEeccChHHHH-h
Confidence 00 0000 0 00123567999999988 222222 236677888887654321 1
Q ss_pred hhc-cccEEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHH
Q 022641 202 LAS-RCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (294)
Q Consensus 202 l~~-r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l 257 (294)
+.. +...+.++ +++.++..+++.+.+. .. ..+.. .+.|+|.|-.+..+.
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g---~~-~eeL~---~eICgGLPLALkLaG 334 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---CR-PQDLP---REVLTTNPRRLSIIA 334 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC---CC-TTTHH---HHHCCCCHHHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcC---CC-HHHHH---HHHhCCCHHHHHHHH
Confidence 211 12345544 7899999999987642 21 22222 233777665544433
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.76 E-value=7.9e-08 Score=73.58 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=46.6
Q ss_pred CcEEEEEeCCC---CCCHHHHHHHHHHHHhhcCcceEEEEec--CCcccchHhhcc--ccEEEecCCCHHHHHHHH
Q 022641 155 PYKIIILDEAD---SMTEDAQNALRRTMETYSKVTRFFFICN--YISRIIEPLASR--CAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 155 ~~~lliiDei~---~l~~~~~~~L~~~l~~~~~~~~ii~~~~--~~~~~~~~l~~r--~~~i~~~~~~~~~~~~~l 223 (294)
++.++++||++ .+++...+.+.+.++. ....+|+++. +.......+.+| +.++.+.+.+.+++...+
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l 172 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDI 172 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHH
Confidence 34699999964 4567788888888876 3444666663 445566778787 668888888766665544
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.67 E-value=9.5e-09 Score=79.21 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec------CCcccchHhhcccc-EEEec
Q 022641 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRIIEPLASRCA-KFRFK 212 (294)
Q Consensus 155 ~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~------~~~~~~~~l~~r~~-~i~~~ 212 (294)
+.++|+|||++.++++..+.|..+.+. ...+++++. .++...+.+++++. +..+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 468999999999987777777766654 445666654 44455677777775 33443
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.66 E-value=2.6e-08 Score=77.54 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=39.7
Q ss_pred cEEEEEeCCCCC--CH-HHH--HHHHHHHH-hhcCcceEEEEecCCcccchHhhcccc-EEEecCC
Q 022641 156 YKIIILDEADSM--TE-DAQ--NALRRTME-TYSKVTRFFFICNYISRIIEPLASRCA-KFRFKPL 214 (294)
Q Consensus 156 ~~lliiDei~~l--~~-~~~--~~L~~~l~-~~~~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~ 214 (294)
..+|||||++.+ +. ... ..++..++ .......+|++++.+..+..++++|+. .+++.++
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 459999999998 21 111 12333333 333455789999998889999999987 5666653
No 108
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.60 E-value=6.5e-08 Score=74.35 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee---cCCCCcchhHHHHHHH-------------------HHHhh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL---NASDDRGINVVRTKIK-------------------TFAAV 140 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------------------~~~~~ 140 (294)
.++++++++|.||||+|-+++-++.+... .+..+ ......+...+...+. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 46999999999999999999998854422 22222 1111111111111100 00000
Q ss_pred hcccCccCCCCCCCCcEEEEEeCCC------CCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 141 AVGSGQRRGGYPCPPYKIIILDEAD------SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 141 ~~~~~~~~~~~~~~~~~lliiDei~------~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
..............++++|||||+. .++ .+.+++++...+....+|+|+|... +++.....
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---~~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~AD 172 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP---LEEVISALNARPGHQTVIITGRGCH---RDILDLAD 172 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---HHHHHHHHHTSCTTCEEEEECSSCC---HHHHHHCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC---HHHHHHHHHhCcCCCEEEEECCCCc---HHHHHhCc
Confidence 0000000001123567899999994 444 3458888899999999999998865 45555544
No 109
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.45 E-value=1.2e-06 Score=72.57 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|+||||+|||+++..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4799999999999999999987
No 110
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.44 E-value=4.1e-07 Score=82.32 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH-------HHHH
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------KTFA 138 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 138 (294)
.+.....+...+. .+.++|+||||||||+++..++..+... +..+..+ +........+.+.. ..+.
T Consensus 191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~-ApT~~Aa~~L~e~~~~~a~Tih~ll 263 (574)
T 3e1s_A 191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLC-APTGKAARRLGEVTGRTASTVHRLL 263 (574)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEE-ESSHHHHHHHHHHHTSCEEEHHHHT
T ss_pred CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEe-cCcHHHHHHhHhhhcccHHHHHHHH
Confidence 3444455544442 3469999999999999999999877322 2233322 22222222222211 1111
Q ss_pred hhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
.... ...........+.++|||||++.++......|+..+ +....+|+++...
T Consensus 264 ~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~ 316 (574)
T 3e1s_A 264 GYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTD 316 (574)
T ss_dssp TEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTT
T ss_pred cCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEeccc
Confidence 1110 001111112235679999999999988776666544 4566788887543
No 111
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.38 E-value=4.1e-06 Score=65.81 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=86.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhh-----cccCc-cCCC---CCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQ-RRGG---YPCP 154 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~---~~~~ 154 (294)
++++.|++||||||++..++..+... +..+..+..........+ ..+..+...+ ..... .... ....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~---G~~V~v~d~D~q~~~~~~-al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ---GVRVMAGVVETHGRAETE-ALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCTTCHHHH-HHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CCCEEEEEeCCCCChhHH-HHhcCccccCcceeecCCcccccccHHHHHhc
Confidence 59999999999999999999987432 223333333222121111 1111111000 00000 0000 0012
Q ss_pred CcEEEEEeCCCCCCHH------HHHHHHHHHHhhcCcceEEEEecCC------------------cccchHhhccccEEE
Q 022641 155 PYKIIILDEADSMTED------AQNALRRTMETYSKVTRFFFICNYI------------------SRIIEPLASRCAKFR 210 (294)
Q Consensus 155 ~~~lliiDei~~l~~~------~~~~L~~~l~~~~~~~~ii~~~~~~------------------~~~~~~l~~r~~~i~ 210 (294)
++++++|||+.+.+.. ..+.+... ......++.|+|.. ..+++.+...+..|.
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~---l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQEL---LAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHH---HHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHH---HcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4579999999886321 22222222 23455677777622 236778888887777
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh-ccCcHHHHHH-HHHHHH
Q 022641 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI-SQGDLRRAIT-YLQGAA 261 (294)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~-~~G~~r~~~~-~l~~~~ 261 (294)
+--++++++.+.+ +.-++...+.+-..+... +.||+-.+.. .|..++
T Consensus 161 lvD~~p~~l~~rl----~~g~vy~~~~~~~a~~~~f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 161 LIDLPPRELLERL----RDGKVYVPEQARAAIDAFFTQTNLTALREMAMQTAA 209 (228)
T ss_dssp EBCCCHHHHHHHH----HTTCCCCTTCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHH----HCCCccChhHHHHHHHhhhchhhHHHHHHHHHHHHH
Confidence 7677777766664 333343344443444444 3566665555 444444
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.33 E-value=2.6e-06 Score=67.34 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=52.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC-c----------------chhHHHHHHHHHHhhhcccCc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-R----------------GINVVRTKIKTFAAVAVGSGQ 146 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~ 146 (294)
.++++||+|+||||++..++..+.... ..+..+..... + ......+....+...
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~------ 84 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSN------ 84 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHST------
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHH------
Confidence 488999999999999999888873221 11111111100 0 000011111111110
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 147 ~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
....+.++|+|||++.++.+..+.+..+.+ . ...+|+++.
T Consensus 85 ----~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 85 ----SFNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp ----TSCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred ----hhCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 011235799999999998776666654443 2 566788775
No 113
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.23 E-value=3.7e-06 Score=76.77 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=58.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCC-ccCCcceeecCCCCcchhHHHHHHHHHHhhh-------------cccCccC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVA-------------VGSGQRR 148 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 148 (294)
+.++++|+||||||+++..+...+.... ..+..+. +-++.......+.+.+....... .......
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vl-l~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~l 243 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEE-EEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhh
Confidence 4699999999999999998887763210 1122232 22333223333332222111100 0000000
Q ss_pred ------------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 149 ------------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 149 ------------~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
........++|||||++.++......|+.. .+....+|+++..
T Consensus 244 l~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~---l~~~~~liLvGD~ 298 (608)
T 1w36_D 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA---LPDHARVIFLGDR 298 (608)
T ss_dssp C-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHT---CCTTCEEEEEECT
T ss_pred hccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHh---CCCCCEEEEEcch
Confidence 000112467999999999987665555544 4566778888754
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.17 E-value=3.4e-06 Score=65.73 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=58.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC-Cc-chhHHHHHHHHHHh-hhcccCccCCCCCCCCcEEEE
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DR-GINVVRTKIKTFAA-VAVGSGQRRGGYPCPPYKIII 160 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lli 160 (294)
..+++||.|+||||.+..++..+... +..++.+.... .+ +...+...+..... ...............+.++|+
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvVi 106 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIA 106 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEE
Confidence 36799999999999999888887422 23333333221 11 11111111110000 000000000000112468999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec------CCcccchHhhcccc
Q 022641 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRIIEPLASRCA 207 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~------~~~~~~~~l~~r~~ 207 (294)
|||++.++++..+.|..+.+ ....+|+++. .++.-.+.|+..+.
T Consensus 107 IDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD 156 (214)
T 2j9r_A 107 IDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQDFRGLPFGQVPQLMAIAE 156 (214)
T ss_dssp ECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBCTTSCBCTTHHHHHHHCS
T ss_pred EECcccCCHHHHHHHHHHhh---CCCEEEEEecccccccCccccHHHHHHhcc
Confidence 99999998777765554433 3556777774 33444445554443
No 115
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.10 E-value=0.00019 Score=56.35 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.07 E-value=9.5e-06 Score=81.92 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+..+++|+||||||||+||.+++.++.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999999998874
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.02 E-value=6.2e-06 Score=63.21 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=48.9
Q ss_pred cEEEECCCCCCHH-HHHHHHHHHhcCCCccCCcceeecCC-CCcchhHHHHHHHHHHhh-hcccCccCCCCCCCCcEEEE
Q 022641 84 HMLFYGPPGTGKT-TTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIII 160 (294)
Q Consensus 84 ~ill~Gp~G~GKT-~la~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lli 160 (294)
..+++||.|+||| +|++++.+.... +..++.+.+. +.+....+...+...... ......... ......++|+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~-~~~~~~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVA-QEALGVAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGH-HHHHTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHH-HhccCCCEEE
Confidence 4899999999999 888888776532 2344444322 111111111111100000 000000000 0011246999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe
Q 022641 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
|||++.+ ++..+.+ ..+.+ ....||+++
T Consensus 97 IDEaQFf-k~~ve~~-~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFC-EAMAN--AGKTVIVAA 124 (195)
T ss_dssp ESSGGGC-TTHHHHH-HHHHH--TTCEEEEEE
T ss_pred EEchhhh-HHHHHHH-HHHHH--CCCeEEEEe
Confidence 9999999 5544444 45543 344566665
No 118
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.96 E-value=0.00022 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 119
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.94 E-value=2e-06 Score=66.35 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+++||.|+||||.+..+++.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999988873
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.92 E-value=0.00013 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|.|+||+||||+++.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 4899999999999999999983
No 121
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.91 E-value=4.5e-05 Score=61.02 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.....+..++.. .+++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34444455554443 259999999999999999888776
No 122
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.88 E-value=9.8e-06 Score=62.15 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++|+||+|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999998
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.86 E-value=1.3e-05 Score=60.98 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999998
No 124
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=2.5e-05 Score=60.12 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCC---CHHHHHHHHHHHHhhcCcceEEEE-e--cCC-cccchHhhcc--ccEEEecCCCHHHHHHHH
Q 022641 153 CPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFI-C--NYI-SRIIEPLASR--CAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 153 ~~~~~lliiDei~~l---~~~~~~~L~~~l~~~~~~~~ii~~-~--~~~-~~~~~~l~~r--~~~i~~~~~~~~~~~~~l 223 (294)
..++++++|||++.+ +...++.|.++++.. ...++.+ + ... ..+.+++..+ +.++.+.+-+.+.+..-+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 456789999998766 345677777787753 2233312 2 221 2445666554 347777776665555444
No 125
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.85 E-value=3.5e-05 Score=61.55 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (294)
.++++.||+|+|||+++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 3799999999999987665543
No 126
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.84 E-value=0.00042 Score=56.13 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|+|+||+||||+++.++..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999984
No 127
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.84 E-value=3.7e-05 Score=60.49 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=51.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC--CCCcchhHHHHHHHHHHhh-hcccCccCCCCCCCCcEEEE
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA--SDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIII 160 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lli 160 (294)
..+++||.|+||||.+-..+..+... +..++.+.. +...+ ..+...+...... ..... ........+.++|+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~-~di~~~~~~~dvVi 95 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLL-RDVAQEALGVAVIG 95 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTCCCC------------CEEEEESSG-GGGHHHHTTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCH-HHHHHHhccCCEEE
Confidence 37899999999998887777776432 222222221 11111 1111111000000 00000 00000002357999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
|||++.+.. ...+.+.+.+ ....+|+++.+
T Consensus 96 IDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 96 IDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp ESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred EEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 999999974 6666677766 45567777743
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=1.6e-05 Score=61.85 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=22.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+||||+++.+++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999998
No 129
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.80 E-value=0.0006 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.0
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+..++|+||||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33459999999999999999999987
No 130
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.79 E-value=9.3e-05 Score=64.34 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|+||+||||+++.++..+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999998876
No 131
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.79 E-value=0.00032 Score=55.02 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=26.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.++|+||+|+|||+++..++... +..++.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~------~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLS------GKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------CSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc------CCcEEEEECCC
Confidence 48999999999999999998822 44555555544
No 132
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.78 E-value=1.7e-05 Score=59.77 Aligned_cols=30 Identities=33% Similarity=0.548 Sum_probs=26.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
.+++|+|++|+||||+++.|++.+ +.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l------g~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL------KLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEE
Confidence 579999999999999999999998 555554
No 133
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.78 E-value=0.0001 Score=74.63 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=59.2
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh---------------------HHHHHHHHHHhh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN---------------------VVRTKIKTFAAV 140 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~ 140 (294)
..+++|+||||||||+++.+++.+.... +..+..+........- ........+..
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~- 1156 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR- 1156 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH-
Confidence 3469999999999999999999987433 2233333333211110 01111111111
Q ss_pred hcccCccCCCCCCCCcEEEEEeCCCCCCHH------------------HHHHHHHHHHhhcCcceEEEEecCC
Q 022641 141 AVGSGQRRGGYPCPPYKIIILDEADSMTED------------------AQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 141 ~~~~~~~~~~~~~~~~~lliiDei~~l~~~------------------~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
..+.++||||++..+.+. ....|++++...+...++++++|..
T Consensus 1157 ------------~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1157 ------------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp ------------HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ------------hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 123469999999998431 1245777777777777777777765
No 134
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.77 E-value=2e-05 Score=59.52 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 135
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.76 E-value=0.001 Score=59.48 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=49.2
Q ss_pred CcEEEEEeCCCCCC----HHHHHHHHHHHHhhc-CcceEEEEecCCc--ccchHhhcccc-EEEecCCCHHHHHHHHH
Q 022641 155 PYKIIILDEADSMT----EDAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 155 ~~~lliiDei~~l~----~~~~~~L~~~l~~~~-~~~~ii~~~~~~~--~~~~~l~~r~~-~i~~~~~~~~~~~~~l~ 224 (294)
.+-+|||||++.+. ......|.++..... ..+.+|++|..+. .+...+++.|. .|.|...+..+...++.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 35699999999773 344555666665543 4566777787766 56777777776 78888888888877763
No 136
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.76 E-value=4.4e-05 Score=65.19 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
....++|+||+|+||||+++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33469999999999999999999876
No 137
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.75 E-value=2.2e-05 Score=59.86 Aligned_cols=25 Identities=40% Similarity=0.681 Sum_probs=23.0
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|+|+||+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999988
No 138
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.73 E-value=2.2e-05 Score=59.67 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=22.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|+|+||+||||+++.|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999998
No 139
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.73 E-value=2.5e-05 Score=59.81 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 359999999999999999999988
No 140
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.71 E-value=0.0012 Score=57.35 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~ 108 (294)
.++++|++|+||||++..++..+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999988743
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.71 E-value=2.3e-05 Score=60.08 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=22.2
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (294)
..+++|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999998
No 142
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.70 E-value=3.1e-05 Score=58.56 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999987
No 143
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.67 E-value=2.9e-05 Score=60.33 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe
Q 022641 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
.+.++|+|||++.++++..+.+..+.+ ....||+.+
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 456799999999999888888877763 344566555
No 144
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.64 E-value=0.00029 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|.||||+||+|.++.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.63 E-value=0.00044 Score=60.03 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++++||+|+||||++..++..+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998873
No 146
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.61 E-value=0.00065 Score=57.59 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+||||++++++..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 79999999999999999998876
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.61 E-value=4.7e-05 Score=61.54 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+||||+++.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999988
No 148
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.60 E-value=0.00055 Score=57.86 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=28.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCc---cCCcceeecCCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASDD 124 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~---~~~~~~~~~~~~~ 124 (294)
.++|+||||+|||+++..++.....+.. .+..++.++....
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4899999999999999999987532211 2345555555543
No 149
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.59 E-value=3.9e-05 Score=58.01 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||||+||||+++.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999999 665
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.58 E-value=0.00013 Score=60.01 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||||+||||+++.++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999886
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.57 E-value=5.5e-05 Score=59.70 Aligned_cols=25 Identities=36% Similarity=0.693 Sum_probs=22.9
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...++|+|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999988
No 152
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.57 E-value=5.6e-05 Score=58.77 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|++|+||||+++.|+..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999987
No 153
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.57 E-value=0.00021 Score=71.54 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++||||||||++|++++.+.
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHh
Confidence 39999999999999999999876
No 154
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.57 E-value=6.3e-05 Score=63.21 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=25.8
Q ss_pred HHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 77 LETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 77 l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..+..++++|+|++|+||||+++.++..+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345555679999999999999999999988
No 155
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.56 E-value=4.9e-05 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 156
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.56 E-value=6.8e-05 Score=58.25 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|+|+||+||||+++.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999988
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.55 E-value=5.2e-05 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...++|+|++|+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999988
No 158
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.55 E-value=4.6e-05 Score=58.69 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.54 E-value=6.1e-05 Score=58.53 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.3
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
....++|+||+|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44569999999999999999999887
No 160
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.53 E-value=5.3e-05 Score=57.98 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.52 E-value=4.9e-05 Score=58.37 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999987
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.52 E-value=0.00044 Score=58.60 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+|+||+|||+++..++..+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999998763
No 163
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.52 E-value=0.0016 Score=51.06 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 153 ~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
....++||+||+|.+. ......+..++...+....+++.|...
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 3456799999999873 344455556666555555565555433
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.52 E-value=8.2e-05 Score=57.78 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.....+.|+||+|+||||+++.++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344469999999999999999999987
No 165
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.51 E-value=0.0044 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++.|+||+|+||||+++.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999876
No 166
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.50 E-value=7.1e-05 Score=56.26 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 167
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.50 E-value=0.00013 Score=57.05 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999988877654
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.49 E-value=0.00035 Score=59.12 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||||+|||+++..++..+.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999987763
No 169
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=7.5e-05 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 170
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.46 E-value=9.8e-05 Score=58.85 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++|.|++|+||||+++.|++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999998
No 171
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.46 E-value=0.00015 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|+||+||||+++.++..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999987
No 172
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.46 E-value=7.4e-05 Score=57.80 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|+||+||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999988
No 173
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.46 E-value=7.1e-05 Score=59.15 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|.||||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999998
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.45 E-value=0.00078 Score=56.96 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||||+|||+++..++..+.
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998863
No 175
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.45 E-value=6.5e-05 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|.|+||+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999988
No 176
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.44 E-value=0.00044 Score=54.49 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEecC
Q 022641 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.+..+||+||+|.+... ....+..++...+....+++.|..
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEee
Confidence 44579999999986432 233455555554555555555433
No 177
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.44 E-value=0.0001 Score=55.82 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999886
No 178
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.44 E-value=9.3e-05 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=22.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+||||+++.|+..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 459999999999999999999886
No 179
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.44 E-value=0.00015 Score=62.89 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=50.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCc----------cCCCCCCC
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ----------RRGGYPCP 154 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 154 (294)
.++.|+||||||+++..++.. .....+.+.. .....+++.+... ........ ........
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~-~aa~~l~~kl~~~-~~~~~~~~~V~T~dsfL~~~~~~~~~ 233 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPGR-QAAEMIRRRANAS-GIIVATKDNVRTVDSFLMNYGKGARC 233 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESCH-HHHHHHHHHHTTT-SCCCCCTTTEEEHHHHHHTTTSSCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCH-HHHHHHHHHhhhc-CccccccceEEEeHHhhcCCCCCCCC
Confidence 789999999999999777531 1222222221 2233333333210 00000000 00000111
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 155 ~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
..++|||||+..++......++..+ ....+|+++..
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~----~~~~vilvGD~ 269 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMS----LCDIAYVYGDT 269 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHT----TCSEEEEEECT
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhC----CCCEEEEecCc
Confidence 2579999999999988877776553 22567777743
No 180
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.43 E-value=7.5e-05 Score=58.82 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|.|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999998
No 181
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=6.4e-05 Score=57.80 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+||||+++.++...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 359999999999999999998753
No 182
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.42 E-value=0.00011 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|.||||+||+|.++.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48889999999999999999988
No 183
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.42 E-value=8.3e-05 Score=58.99 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|+||+||||+++.|++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999987
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=0.00011 Score=56.13 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+||||+++.++..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999875
No 185
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.41 E-value=0.00037 Score=63.46 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
|...+..+...+..+. .++++++|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence 4445555555554443 4689999999999999888887764
No 186
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.40 E-value=7.6e-05 Score=56.91 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=18.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999987
No 187
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.40 E-value=9.8e-05 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|+|++|+||||+++.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999887
No 188
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.40 E-value=0.0016 Score=55.31 Aligned_cols=24 Identities=50% Similarity=0.566 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||||+|||+++..++..+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHH
Confidence 489999999999999999988763
No 189
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.39 E-value=8.8e-05 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 190
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.38 E-value=0.0005 Score=58.22 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+|||+++..++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 191
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.38 E-value=0.00015 Score=56.59 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 69 VVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 69 ~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++.|...+... ....+.|.||+|+||||+++.|+..+
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444554544432 23358999999999999999999987
No 192
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00014 Score=58.58 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|++|+||||+++.++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999988
No 193
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.37 E-value=0.00065 Score=52.72 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCCCH-HHHHHHHHHHHhhcCcceEEEEec
Q 022641 154 PPYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 154 ~~~~lliiDei~~l~~-~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
....+||+||+|.+.. .....+..++...+....+++.|.
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 4567999999997643 333444555555454455555443
No 194
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.35 E-value=0.00012 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|+||+|+|||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998876
No 195
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.35 E-value=0.0009 Score=57.28 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=20.8
Q ss_pred cCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+...++++.+|+|+|||..+...+-..
T Consensus 41 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~ 68 (395)
T 3pey_A 41 HNPPRNMIAQSQSGTGKTAAFSLTMLTR 68 (395)
T ss_dssp CSSCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4444679999999999998766554443
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.35 E-value=0.00015 Score=57.40 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 197
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.35 E-value=0.0021 Score=53.02 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999863
No 198
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.34 E-value=0.00012 Score=57.55 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 199
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.00014 Score=56.87 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.|+|.|+||+||||+++.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999883
No 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.32 E-value=0.00013 Score=57.08 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3459999999999999999999876
No 201
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.32 E-value=0.00014 Score=60.48 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||+++..+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999997
No 202
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.32 E-value=0.0019 Score=54.63 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc--CcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~--~~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+++++.... ....+|++|.+..
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 567899999964 578888888888887653 2556777776643
No 203
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.31 E-value=0.0052 Score=46.19 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=16.7
Q ss_pred cEEEECCCCCCHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALA 101 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~ 101 (294)
.+.|+||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999999995
No 204
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.00033 Score=54.41 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 67 EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 67 ~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...++.+.+.+... ....+.|+|++|+||||+++.++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555566665542 22348999999999999999999876
No 205
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.31 E-value=0.00015 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 48999999999999999999988
No 206
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.31 E-value=0.0033 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
....++|+|++|+|||+++..+....+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345699999999999999999987653
No 207
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.31 E-value=0.00027 Score=65.02 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
-++...+.+..++... +..+|.||||||||+++..+..++.
T Consensus 190 LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHH
Confidence 3677777888777643 2589999999999998877776663
No 208
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.30 E-value=0.0012 Score=55.33 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+...+.-.+..+. .++|+||+|+||||++++++...
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4445544555554 79999999999999999999876
No 209
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.29 E-value=0.00073 Score=52.42 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=16.8
Q ss_pred CcEEEECCCCCCHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIA 103 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la 103 (294)
.++++.+|+|+|||..+...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~ 59 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPI 59 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 479999999999998744433
No 210
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.28 E-value=0.0039 Score=55.25 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=44.0
Q ss_pred EEEEEeCCCCCCH----HHHHHHHHHHHhhc-CcceEEEEecCCc--ccchHhhcccc-EEEecCCCHHHHHHHHH
Q 022641 157 KIIILDEADSMTE----DAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 157 ~lliiDei~~l~~----~~~~~L~~~l~~~~-~~~~ii~~~~~~~--~~~~~l~~r~~-~i~~~~~~~~~~~~~l~ 224 (294)
-+|+|||+..+-. ...+.|..+..... ....+|++|..+. .+...+.+.+. .|.|.-.+..+.+.++.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 4899999976532 22333444434333 3566788887765 46666777665 78888888888887764
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.27 E-value=0.0016 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..++|+||+|+||||++..++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999998874
No 212
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.27 E-value=0.0002 Score=56.58 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 213
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.27 E-value=0.0002 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.8
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+||||+++.++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999999875
No 214
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.26 E-value=0.00022 Score=55.07 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=21.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+|||||++.|+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999999875
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.26 E-value=0.0011 Score=66.59 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+++|+||||||||+++..++....
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999988753
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.26 E-value=0.00021 Score=57.43 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.7
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...++|+||+|+||||+++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999887
No 217
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.26 E-value=0.00018 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.++..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.25 E-value=0.00015 Score=55.48 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=22.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|++|+||||+++.++..+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999987
No 219
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.25 E-value=0.0002 Score=55.18 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999986
No 220
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.24 E-value=0.00018 Score=56.17 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|+|++|+||||+++.|++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999987
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.23 E-value=0.00033 Score=54.78 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.9
Q ss_pred cCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...+..++|+|++|+||||+++.++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444469999999999999999999987
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.23 E-value=0.00023 Score=55.36 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..+.|+||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998876
No 223
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.23 E-value=0.011 Score=43.45 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999988654
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.22 E-value=0.00023 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+||||+++.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999999876
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.22 E-value=0.00016 Score=56.15 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 489999999999999999998 6
No 226
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.22 E-value=0.00021 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
|+|+|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 227
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.22 E-value=0.00021 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999986
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.22 E-value=0.00021 Score=55.88 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..|+|+|++|+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999999987
No 229
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.21 E-value=0.0002 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=22.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|+|++|+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999876
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.20 E-value=0.00027 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|.||+|+||||+++.+++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999988
No 231
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.20 E-value=0.0002 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999998754
No 232
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.20 E-value=0.0014 Score=53.74 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+...+.+..++.. .+.++.+|+|+|||.++..++...
T Consensus 115 ~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 44445555555554 247889999999999998877764
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.16 E-value=0.00021 Score=55.60 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.5
Q ss_pred cEEEECCCCCCHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (294)
.+.|+||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 234
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.16 E-value=0.00036 Score=56.26 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999999887
No 235
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.15 E-value=0.0016 Score=61.06 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHH
Q 022641 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~ 105 (294)
.+..++..+. +++++||+|+|||+++..+...
T Consensus 101 ~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 3444444443 6999999999999977766544
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.15 E-value=0.0003 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999988
No 237
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00029 Score=55.36 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=34.5
Q ss_pred hcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..+......+...+.....+.++|+|++|+||||++..++..+
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33555666666666655566679999999999999999999886
No 238
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.13 E-value=0.0016 Score=53.97 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+........+|+++.+..
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 356799999975 5677777777777776555566777776544
No 239
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.13 E-value=0.002 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||..+...+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 479999999999999876655554
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.13 E-value=0.00019 Score=59.93 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||+|+..|++.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 59999999999999999999987
No 241
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.11 E-value=0.0018 Score=53.65 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHhhcCcceEEEEec
Q 022641 155 PYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 155 ~~~lliiDei~~l~~--~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
.-.+|||||+|.+.. .....+..++...+....+++.|.
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SA 275 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 275 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEES
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEec
Confidence 456999999998743 334445555555455555555553
No 242
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.11 E-value=0.047 Score=43.54 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+|+|+|.+|+|||+++..+...-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999987543
No 243
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.11 E-value=0.00035 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.8
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+||||+++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999999865
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.10 E-value=0.00079 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.787 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+.|.||+|+||||+++.++..+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998873
No 245
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.10 E-value=0.00098 Score=53.08 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEecC
Q 022641 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
....+||+||+|.+... ....+..++...+....+++.|..
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 34579999999976322 233445555555555555555533
No 246
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.07 E-value=0.00035 Score=57.54 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 48899999999999999999987
No 247
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.06 E-value=0.0015 Score=58.31 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcCcceEEEEecC
Q 022641 153 CPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
....++|||||+|.+.. .....+..++...+....+++.|..
T Consensus 257 ~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp CTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 34567999999998753 2334444455555555655555543
No 248
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.06 E-value=0.00038 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+||||+++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.05 E-value=0.00042 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.8
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+|||||++.++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999999876
No 250
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.05 E-value=0.0015 Score=52.52 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.9
Q ss_pred CcEEEECCCCCCHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALA 101 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~ 101 (294)
.++++.+|+|+|||.....
T Consensus 81 ~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEEcCCCCCchhHhHH
Confidence 4799999999999987543
No 251
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.03 E-value=0.00041 Score=58.11 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||+++..|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58999999999999999999987
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.03 E-value=0.00045 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...+.|.||+|+||||+++.++..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999876
No 253
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.02 E-value=0.0023 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.5
Q ss_pred cCCCCcEEEECCCCCCHHHHHHHH
Q 022641 79 TANCPHMLFYGPPGTGKTTTALAI 102 (294)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~l 102 (294)
.+...++++.+|+|+|||..+-..
T Consensus 61 ~~~~~~~lv~apTGsGKT~~~~~~ 84 (412)
T 3fht_A 61 AEPPQNLIAQSQSGTGKTAAFVLA 84 (412)
T ss_dssp SSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCCCCeEEEECCCCchHHHHHHHH
Confidence 343457999999999999886443
No 254
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.02 E-value=0.00034 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 48899999999999999999887
No 255
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.02 E-value=0.00068 Score=53.42 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++.....++..+.....+.++|+|++|+|||+++..++...+
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344555666666555566799999999999999999998874
No 256
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.01 E-value=0.0066 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++++|++|+|||+|++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999877654
No 257
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.00 E-value=0.0086 Score=47.69 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred CcEEEECCCCCCHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTAL 100 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~ 100 (294)
.++++.+|+|+|||....
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 369999999999998743
No 258
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.99 E-value=0.0023 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.7
Q ss_pred CcEEEECCCCCCHHHHHH-HHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~-~la~~~ 106 (294)
.++++.+|+|+|||.... .+...+
T Consensus 62 ~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 479999999999998743 333443
No 259
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.98 E-value=0.0031 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|.|.+|+|||+|+..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 9999999999999999987654
No 260
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.98 E-value=0.0075 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||..+...+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHHHH
Confidence 369999999999998765555443
No 261
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.98 E-value=0.00016 Score=56.31 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++...+.+.........-.++++|++|+|||+++..+....
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444444444444444469999999999999999998654
No 262
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.98 E-value=0.00032 Score=54.76 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.+.|.||.|+|||||++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999876
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.98 E-value=0.00039 Score=54.30 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 264
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.97 E-value=0.00056 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|.|+|++|+||||+++.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 265
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.002 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||+++..++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 59999999999999999999864
No 266
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.95 E-value=0.00055 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|.||.|+||||+++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999999987
No 267
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.95 E-value=0.0013 Score=56.89 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=32.8
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++++--.......+...+ ......++|+||+|+||||++++++..+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CHHHcCCCHHHHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3444443444444555554 33334589999999999999999999873
No 268
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.95 E-value=0.00052 Score=53.93 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+|++|+||||+++.|+. +
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-c
Confidence 589999999999999999987 5
No 269
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.93 E-value=0.00091 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 270
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.93 E-value=0.00075 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+|++|+||||+++.++..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 459999999999999999999987
No 271
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.92 E-value=0.00084 Score=59.51 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHH--HcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 65 HQEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 65 g~~~~~~~l~~~l--~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+++.+.+++.. ......+|+|+|.+|+||||++++|++.+.
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4455555666554 222334699999999999999999999993
No 272
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.91 E-value=0.005 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998654
No 273
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.90 E-value=0.002 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=16.8
Q ss_pred CcEEEECCCCCCHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIA 103 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la 103 (294)
.++++.+|+|+|||......+
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 479999999999998754443
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.89 E-value=0.00087 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
....++|+||+|+||||+++.++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 33469999999999999999999876
No 275
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.89 E-value=0.00066 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
-.++++|++|+|||+++..+...-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999988653
No 276
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.88 E-value=0.0015 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|.||+|+||||+++.+...+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999887
No 277
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.88 E-value=0.00069 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+|++|+||||+++.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999987
No 278
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.88 E-value=0.0049 Score=48.55 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEec
Q 022641 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
.+.++||+||+|.+... ....+..++...+....+++.|.
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 206 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEES
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEe
Confidence 45679999999986432 23344455555555555555543
No 279
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.87 E-value=0.00077 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+|||++++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999765
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.85 E-value=0.00085 Score=55.46 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.9
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
....+.|+||+|+|||||++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33469999999999999999999886
No 281
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.0018 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999865
No 282
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.85 E-value=0.0051 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998765
No 283
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.85 E-value=0.0007 Score=54.19 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (294)
..+.|+||+|+||||+++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3599999999999999999984
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.84 E-value=0.00073 Score=53.60 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=22.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|.||+|+||||+++.++..+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999983
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00057 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (294)
..+.|+|++|+||||+++.|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999874
No 286
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.84 E-value=0.00024 Score=55.54 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 287
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.83 E-value=0.0014 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998764
No 288
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.83 E-value=0.014 Score=57.28 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=30.7
Q ss_pred hcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHH
Q 022641 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~ 104 (294)
-..|..++..+...+.++.+.+++++||+|+|||.++...+-
T Consensus 605 t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 345566666666666667666899999999999988764443
No 289
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.83 E-value=0.00089 Score=55.48 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+.|+||+|+||||+++.++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999998874
No 290
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.82 E-value=0.00061 Score=55.88 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|.|+|++|+||||+++.|+ .+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-HC
Confidence 49999999999999999999 45
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.82 E-value=0.00047 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||++|..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999875
No 292
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.80 E-value=0.0059 Score=44.88 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 293
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.00057 Score=56.43 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||||+|||+|+..++..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999988877763
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.79 E-value=0.00042 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+|++|+||||+++.++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999998764
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.78 E-value=0.00096 Score=50.04 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+.+.|+|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4589999999999999999999873
No 296
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.78 E-value=0.0049 Score=48.84 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEec
Q 022641 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
....+||+||+|.+... ....+..++...+....+++.|.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 44569999999976432 23445555555555554554443
No 297
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.78 E-value=0.00052 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=15.5
Q ss_pred CcEEEECCCCCCHHHHHHHHH-HHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIA-HQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la-~~~ 106 (294)
..+.|+||+|+||||+++.++ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 358999999999999999999 664
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.77 E-value=0.0087 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++.|++|+|||+++..+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 299
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.76 E-value=0.0038 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=17.9
Q ss_pred cCCCCcEEEECCCCCCHHHHHHH
Q 022641 79 TANCPHMLFYGPPGTGKTTTALA 101 (294)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~ 101 (294)
.+...++++.||+|+|||.....
T Consensus 128 ~~~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 128 AEPPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp SBSCCEEEEECCSSSSHHHHHHH
T ss_pred cCCCCcEEEEcCCCCchhHHHHH
Confidence 34346899999999999987543
No 300
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.76 E-value=0.015 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++|+||+|+|||||++.++....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999999999987653
No 301
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.76 E-value=0.0047 Score=53.20 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEecC
Q 022641 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
...++||+||+|.+... ....+..++........+++.|..
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 34569999999986432 234455556555556666666543
No 302
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.75 E-value=0.00095 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.++..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 303
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.74 E-value=0.0076 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+|++|+||||++..|+..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998773
No 304
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.73 E-value=0.0073 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=18.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||......+-+.
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~~~ 98 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVLQC 98 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCchHHHHHHHHHH
Confidence 369999999999997766554443
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.73 E-value=0.0011 Score=50.16 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.++|+|++|+||||++..+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999886
No 306
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.72 E-value=0.0011 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.2
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+...++|+||+|+|||+|+..++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 33469999999999999999988765
No 307
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.72 E-value=0.00064 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998754
No 308
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.71 E-value=0.00091 Score=53.27 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+.+... ...+|++|.+..
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 567799999964 5788888888888776532 456777776654
No 309
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.70 E-value=0.0042 Score=56.59 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccC
Q 022641 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (294)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (294)
..+.+...+... ....+|+|++|.|||+++..++..+. ..+ .+.++...+...+............. ..
T Consensus 180 Q~~al~~~~~~~-~~~~vlta~RGRGKSa~lG~~~a~~~------~~~-~vtAP~~~a~~~l~~~~~~~i~~~~P--d~- 248 (671)
T 2zpa_A 180 QQQLLKQLMTMP-PGVAAVTAARGRGKSALAGQLISRIA------GRA-IVTAPAKASTDVLAQFAGEKFRFIAP--DA- 248 (671)
T ss_dssp HHHHHHHHTTCC-SEEEEEEECTTSSHHHHHHHHHHHSS------SCE-EEECSSCCSCHHHHHHHGGGCCBCCH--HH-
T ss_pred HHHHHHHHHHhh-hCeEEEecCCCCCHHHHHHHHHHHHH------hCc-EEECCCHHHHHHHHHHhhCCeEEeCc--hh-
Confidence 334444444322 23589999999999999999999883 222 44555555555554433221100000 00
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 022641 149 GGYPCPPYKIIILDEADSMTEDAQNALR 176 (294)
Q Consensus 149 ~~~~~~~~~lliiDei~~l~~~~~~~L~ 176 (294)
........++|||||+-.++......|+
T Consensus 249 ~~~~~~~~dlliVDEAAaIp~pll~~ll 276 (671)
T 2zpa_A 249 LLASDEQADWLVVDEAAAIPAPLLHQLV 276 (671)
T ss_dssp HHHSCCCCSEEEEETGGGSCHHHHHHHH
T ss_pred hhhCcccCCEEEEEchhcCCHHHHHHHH
Confidence 0011224579999999999877555444
No 310
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.70 E-value=0.01 Score=50.65 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcCcceEEEEe
Q 022641 153 CPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
....++||+||+|.+.. .....+..++...+....+++.|
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 34567999999998753 44455555665555455555554
No 311
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.70 E-value=0.0016 Score=59.56 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++.....+...+. .+..+|.||||||||+++..+...+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4556666666553 24689999999999999988887763
No 312
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.68 E-value=0.0064 Score=55.13 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
.+++++++||.- .+++.....+.+.+........+|+++.+...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 356799999975 57777777788887766555667777766553
No 313
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.68 E-value=0.013 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999998654
No 314
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.68 E-value=0.01 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 49999999999999999998754
No 315
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.00079 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.+++.|++|+|||+++..+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998643
No 316
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.018 Score=52.38 Aligned_cols=55 Identities=7% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCcccchHhhccccEE
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYISRIIEPLASRCAKF 209 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~~~~~l~~r~~~i 209 (294)
.++.++++||-- .|++.....+..++..... ...+|+++.+.. ....+.+|..++
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl 294 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCII 294 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 456799999964 6788888888888876544 345666665433 223444444433
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.67 E-value=0.0011 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+.|.||+|+||||+++.|+..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 489999999999999999998873
No 318
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.67 E-value=0.0019 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 49999999999999999998754
No 319
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.66 E-value=0.012 Score=51.61 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999988886665
No 320
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.65 E-value=0.013 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
-++|.|+||+|||+++..++..+.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999997763
No 321
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.65 E-value=0.0034 Score=52.49 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=28.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCC---ccCCcceeecCCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDD 124 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~~~~~~~ 124 (294)
.++|+||||+|||+++..++.....+. ..+..++.++....
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 499999999999999999998763321 01334555555543
No 322
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.65 E-value=0.0093 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998765
No 323
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.64 E-value=0.001 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.||+|+|||+++..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 48899999999999999999987
No 324
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.63 E-value=0.0073 Score=48.08 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEec
Q 022641 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
.....+||+||+|.+... ....+..++...+....+++.|.
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SA 215 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEES
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 345679999999986432 23344555555555555555443
No 325
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.63 E-value=0.00052 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+....
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 326
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.63 E-value=0.0042 Score=54.15 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.3
Q ss_pred CcEEEECCCCCCHHHHH-HHHH
Q 022641 83 PHMLFYGPPGTGKTTTA-LAIA 103 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la-~~la 103 (294)
.++++.||+|+|||..+ ..+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999986 4444
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.63 E-value=0.0062 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998754
No 328
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.63 E-value=0.0016 Score=57.87 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+...+...+..+. +++|+||+|+||||++++++..+
T Consensus 247 ~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 444555555555544 69999999999999999998766
No 329
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.63 E-value=0.0047 Score=52.79 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=24.3
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEecC
Q 022641 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.+.++||+||+|.+... ....+..++...+....+++.|..
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 45679999999986432 233344455554555555555543
No 330
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.004 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||..+...+.+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 379999999999998776555443
No 331
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.62 E-value=0.0082 Score=53.42 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.....+..++.. .+++++||+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 34444444444443 469999999999999997777664
No 332
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.61 E-value=0.00063 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998764
No 333
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.60 E-value=0.0016 Score=50.54 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=22.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|.|.|++|+|||++++.+++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999999
No 334
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.59 E-value=0.0012 Score=52.62 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHH---hhcCcceEEEEecCCcc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTME---TYSKVTRFFFICNYISR 197 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~---~~~~~~~ii~~~~~~~~ 197 (294)
.++.++++||.- .|++.....+.+.+. .......+|++|.+...
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 356799999965 578888888888773 22334567777766543
No 335
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.0035 Score=50.71 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=24.2
Q ss_pred CCCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEec
Q 022641 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
..+..+|||||+|.+... ....+..++...+....+++.|.
T Consensus 199 ~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred cccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 345679999999986432 23344555555555555555443
No 336
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.58 E-value=0.0012 Score=52.62 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.++++||.- .|++.....+.+.+..... ...+|++|.+..
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567799999964 6788888888887766532 455777776543
No 337
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.57 E-value=0.009 Score=54.25 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=32.6
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.++++||.- .+++.....+.+.+........+|+++.+..
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 467799999975 5788878888888877656667788887654
No 338
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.57 E-value=0.001 Score=52.62 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~ 195 (294)
.++.++++||.- .|++.....+.+.+.... ....+|++|.+.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 567899999964 578887777777776543 245677777653
No 339
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.59 E-value=0.00036 Score=54.13 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=21.2
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..-.++++|++|+|||+|+..+....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 33459999999999999998887543
No 340
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.56 E-value=0.0068 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 49999999999999999998764
No 341
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.56 E-value=0.0022 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.8
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+||||+++.|+..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999876
No 342
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.56 E-value=0.0013 Score=53.27 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~ 195 (294)
.++.+|++||.- .|++.....+.+.+.... ....+|++|.+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 467799999964 578887777777776543 245577777653
No 343
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.56 E-value=0.0017 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
+-|.||||+||||+++.|++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999988
No 344
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.54 E-value=0.0012 Score=59.16 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH--HcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 67 EEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 67 ~~~~~~l~~~l--~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+...++... .......++|+|++|+||||+++.|+..+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34444444433 222334699999999999999999999983
No 345
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.54 E-value=0.004 Score=61.85 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCccc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~ 198 (294)
.++.+|++||+- .++......+.+.+++......+|+++.....+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH
Confidence 456799999986 456666677777887766666677777665543
No 346
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.54 E-value=0.0014 Score=51.38 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|.||.|+|||||++.++..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998765
No 347
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.53 E-value=0.0024 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.|+|.|++|+||||+++.++..+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999884
No 348
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.53 E-value=0.0031 Score=53.50 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=23.7
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+....+.|+|+||+||||++..++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444699999999999999999998863
No 349
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0033 Score=58.55 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.2
Q ss_pred CCcEEEECCCCCCHHHHHHHHH
Q 022641 82 CPHMLFYGPPGTGKTTTALAIA 103 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la 103 (294)
..+++++||+|+|||+.+....
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 3579999999999999985443
No 350
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.53 E-value=0.0013 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|.||+|||||||++.++...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358999999999999999999865
No 351
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0016 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||||+|||+++..++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999998887765
No 352
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.53 E-value=0.0076 Score=54.87 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
.++.++++||.- .+++.....+.+.+.+......+|+++.+...
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 456799999975 56777777777777765556667778876553
No 353
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0034 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++++|++|+|||+++..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.52 E-value=0.0019 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...++|+||+|+||||+++.++..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3469999999999999999999876
No 355
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0017 Score=53.78 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+.|+||+|+||||+++.++..+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998873
No 356
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0071 Score=46.06 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+|++|+|||+|+..+...-+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 399999999999999999988753
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.49 E-value=0.0018 Score=55.20 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||- -.|++.....++..+..... ...+|++|.+..
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 35679999995 46788777777777765432 456777776543
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.49 E-value=0.0018 Score=54.89 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||- ..|+......+...+..... ...+|++|.+..
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 56789999995 46787777777777765432 456777776643
No 359
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.49 E-value=0.0016 Score=52.80 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~ 195 (294)
.++.+|++||.- .|++.....+.+.+.... ....+|++|.+.
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 567899999964 578887777777776543 245577777553
No 360
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.49 E-value=0.0017 Score=54.28 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.++..+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999877
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.48 E-value=0.0025 Score=54.23 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.-.+..+. .++|+||+|+||||++++++...
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 33433344443 79999999999999999998865
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.48 E-value=0.0018 Score=54.81 Aligned_cols=43 Identities=9% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||- ..|++.....+...+..... ...+|++|.+..
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56779999995 46788777777777765432 456777776543
No 363
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.48 E-value=0.005 Score=52.98 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=27.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCc---cCCcceeecCCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASDD 124 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~---~~~~~~~~~~~~~ 124 (294)
.+.|+||||+|||+|+..++-....+.. ....++.++....
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 4999999999999999988755432211 1234555665543
No 364
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.48 E-value=0.022 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++++|++|+||||++..|+..+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488899999999999999998874
No 365
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.47 E-value=0.002 Score=52.37 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+..... ...+|++|.+..
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 357799999965 5788888889988887643 455777776543
No 366
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.47 E-value=0.0084 Score=54.63 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.+.|+||+|+||||++++++...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 559999999999999999998754
No 367
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.46 E-value=0.0019 Score=51.95 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+..... ...+|++|.+..
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 356799999964 5788888888888877643 456777776544
No 368
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.45 E-value=0.0019 Score=54.90 Aligned_cols=43 Identities=9% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||- ..|+......+...+..... ...+|++|.+..
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56779999995 46788877777777765432 456777776643
No 369
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.45 E-value=0.0016 Score=53.17 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc--CcceEEEEecCCcccchHhhccc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYISRIIEPLASRC 206 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~--~~~~ii~~~~~~~~~~~~l~~r~ 206 (294)
.++.+|++||.- .|++.....+.+++.+.. ....+|++|.+...+ ..+.+|+
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~-~~~~drv 214 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV-PLYCDNV 214 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG-GGGCSEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-HHhCCEE
Confidence 567899999964 578888877877776643 245677777665433 2334443
No 370
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.45 E-value=0.0018 Score=54.67 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||- ..|+......+...+..... ...+|++|.+..
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 56789999995 46788777777777765432 456777776543
No 371
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.45 E-value=0.0069 Score=56.71 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHH
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~ 105 (294)
.|..++..+...+..+...++++.||+|+|||..+...+-.
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 46666777777776776678999999999999987655443
No 372
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.45 E-value=0.0018 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|++|+|||||++.+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 373
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.45 E-value=0.0019 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..++|.||||+||||++..++..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999998873
No 374
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.44 E-value=0.001 Score=54.71 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=18.8
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|.|+||+|+||||+++.++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999876
No 375
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.44 E-value=0.0016 Score=52.61 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+..... ...+|++|.+..
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 467799999964 6788888878777766432 456777776644
No 376
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.44 E-value=0.003 Score=59.39 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++.....+...+. .+..+|.||||||||+++..+...+.
T Consensus 358 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4555566665554 24689999999999999988887764
No 377
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.44 E-value=0.0016 Score=52.24 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+........+|++|.+..
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 467799999965 5778777777777776544556777776644
No 378
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.44 E-value=0.0075 Score=53.10 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+...+.+..++.. .++++.||+|+|||.++..++...
T Consensus 95 ~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44445555545443 259999999999999998887776
No 379
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.43 E-value=0.0017 Score=51.48 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHH-HHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRT-METYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~-l~~~~~~~~ii~~~~~~~ 196 (294)
.++.++++||.- .+++.....+.+. +........+|++|.+..
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 457799999964 5788888888875 344333456777776543
No 380
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.43 E-value=0.0017 Score=47.78 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+++..+...-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 381
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.43 E-value=0.0018 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+||||++..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999765
No 382
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.43 E-value=0.0017 Score=51.91 Aligned_cols=42 Identities=10% Similarity=0.197 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~ 195 (294)
.++.+|++||.- .|++.....+.+.+.... ....+|++|.+.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 567899999964 578888877777776653 345577777654
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.42 E-value=0.0016 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|.|++|+|||||++.++....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987653
No 384
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.00081 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+|++|+||||+++.++..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 385
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.42 E-value=0.0017 Score=52.71 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=29.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 155 ~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
++.+|++||-- .|++.....+.+.+..... ...+|++|.+..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 78899999964 5788888888877766532 345677775543
No 386
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.42 E-value=0.0018 Score=52.76 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+..... ...+|++|.+..
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 567899999964 5788888888888887643 556777776643
No 387
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.42 E-value=0.0045 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=21.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||||+|||+++..++...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999874
No 388
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.41 E-value=0.0018 Score=52.15 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~ 195 (294)
.++.+|++||.- .|++.....+.+.+.... ....+|++|.+.
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 567899999964 678887777777776643 345677777654
No 389
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.40 E-value=0.0018 Score=52.32 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.++++||.- .|++.....+.+.+........+|++|.+..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~ 215 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 356799999964 5788888888888876655566777776654
No 390
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.40 E-value=0.0021 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||+|+||||++..++..+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHH
Confidence 389999999999999999998873
No 391
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.40 E-value=0.0018 Score=51.99 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.1
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCC
Q 022641 158 IIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (294)
Q Consensus 158 lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~ 195 (294)
+|++||.- .|++.....+.+.+.... ....+|++|.+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 99999964 578888888887777653 345567777553
No 392
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.40 E-value=0.016 Score=51.89 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccC---------------------------------------------------
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYK--------------------------------------------------- 113 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~--------------------------------------------------- 113 (294)
+.|+||.|+|||||++.++..+......-
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVN 107 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHH
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCcHH
Q ss_pred ---------------------CcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeC-CCCCCHHH
Q 022641 114 ---------------------SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE-ADSMTEDA 171 (294)
Q Consensus 114 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe-i~~l~~~~ 171 (294)
.....-......+...-+-.+......... +|++|| ...|+...
T Consensus 108 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~--------------illlDEPts~LD~~~ 173 (538)
T 3ozx_A 108 EILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREAD--------------VYIFDQPSSYLDVRE 173 (538)
T ss_dssp HHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCS--------------EEEEESTTTTCCHHH
T ss_pred HHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC--------------EEEEECCcccCCHHH
Q ss_pred HHHHHHHHHhhcCcceEEEEecC
Q 022641 172 QNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 172 ~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
...+++++........+|+++.+
T Consensus 174 ~~~l~~~l~~l~~g~tii~vsHd 196 (538)
T 3ozx_A 174 RMNMAKAIRELLKNKYVIVVDHD 196 (538)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSC
T ss_pred HHHHHHHHHHHhCCCEEEEEEeC
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.38 E-value=0.0016 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+|||||++.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998765
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.38 E-value=0.0018 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|.|++|+|||++|..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5999999999999999999875
No 395
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.37 E-value=0.0021 Score=54.70 Aligned_cols=43 Identities=7% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.+|++||- ..|++.....+...+..... ...+|++|.+..
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 46779999995 46788777777777765432 456777776543
No 396
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.37 E-value=0.021 Score=54.39 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.8
Q ss_pred cEEEECCCCCCHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (294)
.++|+||.|+||||+++.++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999853
No 397
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.37 E-value=0.002 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+|+||.|+|||+++.+|.-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998876
No 398
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.37 E-value=0.0021 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|.|++|+|||+|+..+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999753
No 399
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.36 E-value=0.0017 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.3
Q ss_pred cEEEECCCCCCHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (294)
.++|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 400
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.35 E-value=0.002 Score=52.72 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceE--EEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRF--FFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~i--i~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+++..... ...+ |++|.+..
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence 467799999964 5788877777777765432 3345 77776644
No 401
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.35 E-value=0.022 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|+||.|+||||+.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 4899999999999999998743
No 402
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0036 Score=47.57 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHH
Q 022641 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~ 105 (294)
+.+ +.......++++|++|+|||+++..+...
T Consensus 8 ~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 8 IWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 444 34444456999999999999999999843
No 403
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.34 E-value=0.0019 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=19.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|.|++|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999988
No 404
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.32 E-value=0.0022 Score=52.10 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~~ 196 (294)
.++.+|++||.- .|++.....+.+.+.... ....+|++|.+..
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 567899999965 578888888888877653 3456777776544
No 405
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.32 E-value=0.012 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999987543
No 406
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.32 E-value=0.0055 Score=53.85 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.|+..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 38999999999999999999877
No 407
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.32 E-value=0.0016 Score=54.85 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhc--CcceEEEEecCC
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYS--KVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~--~~~~ii~~~~~~ 195 (294)
.++.+|++||- ..|++.....+...+.... ....+|++|.+.
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56789999995 4678887777777776543 245677777654
No 408
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.30 E-value=0.0074 Score=56.07 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHH
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la 103 (294)
.|...+..+. . ..++++.||+|+|||+.+....
T Consensus 29 ~Q~~~i~~i~----~--~~~~lv~apTGsGKT~~~~l~i 61 (702)
T 2p6r_A 29 PQAEAVEKVF----S--GKNLLLAMPTAAGKTLLAEMAM 61 (702)
T ss_dssp CCHHHHHHHT----T--CSCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----C--CCcEEEEcCCccHHHHHHHHHH
Confidence 4555554432 2 3479999999999999984433
No 409
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.29 E-value=0.013 Score=54.60 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=16.2
Q ss_pred CcEEEECCCCCCHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTAL 100 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~ 100 (294)
.+++++||+|+|||..+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 489999999999999883
No 410
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.28 E-value=0.04 Score=46.13 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
-++|.|+||+|||+++..++..+.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999998763
No 411
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.27 E-value=0.0023 Score=51.54 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~ 195 (294)
.++.+|++||.- .|++.....+.+.+..... ...+|++|.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 467799999965 5788888888888776532 45677777654
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0028 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+.|+||+|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 89999999999999999999873
No 413
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.012 Score=57.29 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=19.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++++||+|+|||..+...+...
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHH
Confidence 479999999999999876554443
No 414
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0045 Score=58.19 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++.....+...+. .+.++|.||||||||+++..+...+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4555566655553 3468999999999999987776654
No 415
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0022 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 416
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.24 E-value=0.038 Score=48.26 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=26.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
-++|.|+||+|||+++..++....... +.++..++..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 389999999999999999998763211 2345555443
No 417
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.23 E-value=0.0032 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|+|++|+||||+++.|++.+
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
No 418
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.23 E-value=0.0029 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|.|.|++|||||++++.|++.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
No 419
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.22 E-value=0.017 Score=52.90 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhhc
Q 022641 154 PPYKIIILDEADSMTEDAQNALRRTMETYS 183 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~~~~~L~~~l~~~~ 183 (294)
.+..+|||||++.++......+..+++..+
T Consensus 317 ~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 317 GAYDIIICDECHSTDSTTILGIGTVLDQAE 346 (666)
T ss_dssp TSCSEEEETTTTCCSHHHHHHHHHHHHHTT
T ss_pred CcccEEEEccchhcCccHHHHHHHHHHhhh
Confidence 456799999999998776555555555443
No 420
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.22 E-value=0.003 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 421
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.21 E-value=0.014 Score=58.15 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+..+.|+||+|+||||+++.+.+.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 33459999999999999999998876
No 422
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0011 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+....
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998764
No 423
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.21 E-value=0.0026 Score=54.50 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.+|++||- ..|++.....+...+........+|+++.+..
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 46779999995 45777777888888876555566777776643
No 424
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.20 E-value=0.0024 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=22.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+.|+||+|+|||||++.|+..+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999873
No 425
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.20 E-value=0.0027 Score=55.23 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=22.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|++|+||||++..++..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999887
No 426
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.19 E-value=0.0048 Score=55.38 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHH--HcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l--~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++...++... .......++|+|++|+||||+++.|++.+
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 345555555555 22223358999999999999999999987
No 427
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.19 E-value=0.00085 Score=52.26 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|++|+|||+|+..+...-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998654
No 428
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.19 E-value=0.003 Score=47.18 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=19.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+|+..+...-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 49999999999999999987543
No 429
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.17 E-value=0.0039 Score=46.71 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...++++|++|+|||+++..+...-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3469999999999999999997643
No 430
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.17 E-value=0.014 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 49999999999999999997654
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.17 E-value=0.0028 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.|+|.|++|+||||+++.++..+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999883
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.16 E-value=0.0038 Score=49.10 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=22.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|.|++|+||||+++.+++.+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999987
No 433
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.16 E-value=0.0016 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.8
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+|||||++.|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 359999999999999999997543
No 434
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.15 E-value=0.0025 Score=51.61 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.++++||.- .|++.....+.+.+..... .+|++|.+..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 467799999964 6788888889999887655 6777776643
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0043 Score=49.49 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|+|+||+|||+++..++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4999999999999999887754
No 436
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.14 E-value=0.0033 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+++|.||+||||+++.+++.+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999887
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.13 E-value=0.0018 Score=54.83 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|.||+|+|||||++.++...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999999765
No 438
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.12 E-value=0.0036 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 439
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.10 E-value=0.0034 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|.|++|+|||+|+..+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999864
No 440
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.10 E-value=0.0042 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=22.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|.|++|+||||+++.+++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999998
No 441
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.10 E-value=0.004 Score=52.38 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.....+.|+||||+||||+++.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344469999999999999999999765
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.09 E-value=0.0055 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|.||+|+|||||++.++ ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 58999999999999999998 44
No 443
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.08 E-value=0.0039 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 444
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0024 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.0
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~ 104 (294)
....++++|++|+|||+++..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 334599999999999999988753
No 445
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.08 E-value=0.024 Score=49.08 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++++|++|+||||++..++..+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488889999999999999999884
No 446
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.07 E-value=0.0037 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.9
Q ss_pred cEEEECCCCCCHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (294)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 447
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.07 E-value=0.0087 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+|+||+|||||...+...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999865
No 448
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.018 Score=55.60 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=17.4
Q ss_pred cEEEECCCCCCHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (294)
++++.+|+|+|||.++.....
T Consensus 103 ~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 799999999999998754443
No 449
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.05 E-value=0.0044 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+++.|++|+|||+++..+...-+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 489999999999999999987653
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.05 E-value=0.0041 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+....
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 49999999999999999988754
No 451
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.04 E-value=0.0042 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+++..+...-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 452
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.04 E-value=0.003 Score=51.90 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHH-HHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRT-METYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~-l~~~~~~~~ii~~~~~~~ 196 (294)
.++.++++||.- .|++.....+.+. +........+|++|.+..
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 457799999965 5788888888875 333333456777776643
No 453
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.04 E-value=0.0038 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|.||+|+|||||++.++...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 48999999999999999997654
No 454
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.03 E-value=0.0069 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=17.4
Q ss_pred CcEEEECCCCCCHHHHH-HHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTA-LAIAHQ 105 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la-~~la~~ 105 (294)
.++++.+|+|+|||... -.+...
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~ 210 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVRE 210 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999963 434433
No 455
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0041 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++++|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.01 E-value=0.0014 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|.|++|+||||+++.|++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999886
No 457
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.00 E-value=0.0039 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.|+|.|++|+||||.++.+++.+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999884
No 458
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.00 E-value=0.0044 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+++..+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 459
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.00 E-value=0.01 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||+++.++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999998743
No 460
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.98 E-value=0.0049 Score=47.90 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
+-|+|..|+||||+++.++. + +.+++..+
T Consensus 12 iglTGgigsGKStv~~~l~~-~------g~~vidaD 40 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-R------GASLVDTD 40 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-T------TCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHH-C------CCcEEECc
Confidence 89999999999999999987 6 66666554
No 461
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.98 E-value=0.021 Score=49.89 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=26.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
-++|.|+||+|||+++..++..+... +..+..++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 39999999999999999999887422 3344444443
No 462
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.97 E-value=0.044 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||..+...+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 469999999999998876665444
No 463
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.97 E-value=0.0038 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 464
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.96 E-value=0.0036 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|+|++|+|||+|+..+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999865
No 465
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.95 E-value=0.0048 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++|+|++|+||||++..++..+.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998873
No 466
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.94 E-value=0.0073 Score=46.48 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=4.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|+|++|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998766
No 467
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.94 E-value=0.0035 Score=46.41 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.7
Q ss_pred cEEEECCCCCCHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (294)
.++++|++|+|||+|+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998853
No 468
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.94 E-value=0.0049 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+++..+...-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999997644
No 469
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.93 E-value=0.0047 Score=52.12 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 77 LETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 77 l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.-+....+.|.||+|+|||||++.++...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444455579999999999999999999987
No 470
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.93 E-value=0.005 Score=46.75 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+|++|+|||+|+..+....
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999998887654
No 471
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.005 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.+.|+||.|+|||||++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44579999999999999999998865
No 472
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.92 E-value=0.0048 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+|+..+...-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 49999999999999999997543
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.92 E-value=0.0052 Score=53.59 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 77 LETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 77 l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.-.....+.|.||+|+|||||++.++...
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444455579999999999999999999987
No 474
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.92 E-value=0.0075 Score=51.22 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+--.+..++...+.|+||+|+|||+++..+++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 33333444556679999999999999999998875
No 475
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.91 E-value=0.005 Score=46.79 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 49999999999999999998764
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.91 E-value=0.0051 Score=46.53 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+|+..+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.91 E-value=0.0049 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++++|.||+||||+++.+++.+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 599999999999999999999873
No 478
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.90 E-value=0.005 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998754
No 479
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.90 E-value=0.047 Score=48.32 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=57.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhh-c--ccCcc-CCC--------
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-V--GSGQR-RGG-------- 150 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~-------- 150 (294)
.+.+|.-+.|+|||..+-+++..+..... ..+++.+.+.. -...+...+..+.... . -.+.. ...
T Consensus 57 ~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~~--l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi 133 (500)
T 1z63_A 57 FGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLS--VLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIIL 133 (500)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECST--THHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccHH--HHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEE
Confidence 36899999999999999888877642221 12333343332 3344555554432110 0 00000 000
Q ss_pred -----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 151 -----------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 151 -----------~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
......++||+||+|++.... ....+.+.......++.+++.+.
T Consensus 134 ~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~ 188 (500)
T 1z63_A 134 TTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPI 188 (500)
T ss_dssp EEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCS
T ss_pred eeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCC
Confidence 011346799999999984221 12334444444455566666543
No 480
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.90 E-value=0.0048 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|+|+|.+|+||||+++.|++.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999987
No 481
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.89 E-value=0.0045 Score=47.21 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (294)
...++++|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999998754
No 482
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.87 E-value=0.038 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.+|+|+|||..+...+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 479999999999998876666544
No 483
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.85 E-value=0.0057 Score=46.51 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 39999999999999999988654
No 484
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.84 E-value=0.0058 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+++..+...-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 39999999999999999998654
No 485
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.84 E-value=0.0069 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+|+||.|+|||+++.++.-.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999987663
No 486
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.83 E-value=0.0048 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+|+..+....
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 49999999999999999998764
No 487
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.81 E-value=0.0048 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998654
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.80 E-value=0.0048 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 022641 85 MLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~ 105 (294)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 489
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.006 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+++.|++|+|||+|+..+...-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 499999999999999999987543
No 490
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.80 E-value=0.0052 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (294)
..+++.|++|+|||+++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998765
No 491
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.79 E-value=0.0061 Score=45.96 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+++..+....
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998664
No 492
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.79 E-value=0.0045 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++++|++|+|||+|+..+...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998654
No 493
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.79 E-value=0.0065 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (294)
.++|+|++|+|||+|+..+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 494
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.78 E-value=0.005 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+++.|++|+|||+++..+...-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998643
No 495
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.78 E-value=0.021 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=17.4
Q ss_pred CcEEEECCCCCCHHHHH-HHHHH
Q 022641 83 PHMLFYGPPGTGKTTTA-LAIAH 104 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la-~~la~ 104 (294)
.++++.||+|+|||..+ ..+..
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~ 31 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILA 31 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999985 43444
No 496
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.77 E-value=0.0063 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|++|+|||+|+..+...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998754
No 497
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.76 E-value=0.0063 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=19.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 39999999999999998776654
No 498
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.76 E-value=0.0045 Score=46.46 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|++|+|||+|+..+...-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 499
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.75 E-value=0.0052 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998654
No 500
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0066 Score=46.46 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|++|+|||+|+..+...-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998754
Done!