Query 022643
Match_columns 294
No_of_seqs 241 out of 2039
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 8.5E-58 1.8E-62 405.0 29.2 279 15-294 2-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.2E-50 2.5E-55 370.8 32.7 282 8-294 24-306 (308)
3 PRK12888 ubiA prenyltransferas 100.0 4E-36 8.7E-41 272.2 30.4 250 6-280 15-268 (284)
4 PRK12895 ubiA prenyltransferas 100.0 3.3E-36 7.1E-41 272.0 29.1 226 39-282 40-269 (286)
5 TIGR01475 ubiA_other putative 100.0 3.3E-34 7.2E-39 260.1 30.1 225 37-278 37-264 (282)
6 PLN02809 4-hydroxybenzoate non 100.0 2E-34 4.2E-39 261.5 27.9 221 38-278 47-270 (289)
7 PRK12876 ubiA prenyltransferas 100.0 3.4E-34 7.3E-39 259.1 29.0 227 35-278 46-280 (300)
8 PRK13106 ubiA prenyltransferas 100.0 3.3E-34 7.1E-39 260.9 28.9 228 37-281 50-283 (300)
9 PRK12874 ubiA prenyltransferas 100.0 1.1E-33 2.4E-38 257.0 31.4 226 36-280 47-274 (291)
10 PRK12870 ubiA 4-hydroxybenzoat 100.0 6.9E-34 1.5E-38 258.5 28.1 226 37-282 47-277 (290)
11 COG0382 UbiA 4-hydroxybenzoate 100.0 4.2E-33 9.1E-38 253.8 29.0 236 35-289 46-283 (289)
12 PRK12886 ubiA prenyltransferas 100.0 1.1E-32 2.4E-37 250.6 30.9 227 37-282 43-273 (291)
13 PRK12848 ubiA 4-hydroxybenzoat 100.0 8.8E-33 1.9E-37 250.7 29.6 225 38-282 44-271 (282)
14 TIGR01474 ubiA_proteo 4-hydrox 100.0 1.8E-32 3.8E-37 248.5 29.9 226 38-283 42-270 (281)
15 PRK12882 ubiA prenyltransferas 100.0 8.9E-33 1.9E-37 250.1 27.8 227 38-283 40-269 (276)
16 PRK12873 ubiA prenyltransferas 100.0 6.6E-33 1.4E-37 250.7 25.3 230 37-284 45-283 (294)
17 PRK12884 ubiA prenyltransferas 100.0 4.6E-32 9.9E-37 245.8 29.9 227 37-282 38-265 (279)
18 PRK12847 ubiA 4-hydroxybenzoat 100.0 7.3E-32 1.6E-36 245.1 30.6 229 36-284 45-276 (285)
19 PRK12392 bacteriochlorophyll c 100.0 3.8E-32 8.3E-37 250.4 28.6 209 42-264 56-271 (331)
20 PRK12878 ubiA 4-hydroxybenzoat 100.0 4.7E-32 1E-36 248.8 28.7 226 37-282 73-301 (314)
21 TIGR01476 chlor_syn_BchG bacte 100.0 4.7E-32 1E-36 246.2 28.3 184 38-232 40-223 (283)
22 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.9E-31 4.1E-36 241.7 29.6 226 37-283 38-266 (279)
23 PRK07566 bacteriochlorophyll/c 100.0 1.9E-31 4E-36 245.3 29.0 182 39-230 68-249 (314)
24 PRK12869 ubiA protoheme IX far 100.0 2.9E-30 6.2E-35 233.8 30.2 230 38-285 38-272 (279)
25 TIGR02056 ChlG chlorophyll syn 100.0 3.9E-30 8.5E-35 235.7 29.2 181 38-229 56-242 (306)
26 PLN00012 chlorophyll synthetas 100.0 9.2E-30 2E-34 237.7 30.7 230 38-284 125-362 (375)
27 PRK04375 protoheme IX farnesyl 100.0 3.4E-30 7.5E-35 235.2 26.9 231 37-284 45-280 (296)
28 PRK05951 ubiA prenyltransferas 100.0 1.8E-29 4E-34 230.3 30.8 254 5-278 16-278 (296)
29 TIGR01473 cyoE_ctaB protoheme 100.0 3.9E-29 8.6E-34 226.7 30.7 232 37-285 36-273 (280)
30 PRK13595 ubiA prenyltransferas 100.0 5.5E-29 1.2E-33 223.7 27.0 175 39-229 50-228 (292)
31 KOG1381 Para-hydroxybenzoate-p 100.0 9E-31 1.9E-35 227.0 13.9 229 36-285 103-336 (353)
32 PRK06080 1,4-dihydroxy-2-napht 100.0 2.3E-28 5.1E-33 223.0 30.4 223 37-275 39-270 (293)
33 PRK12883 ubiA prenyltransferas 100.0 2.1E-28 4.5E-33 221.7 28.4 169 38-223 39-207 (277)
34 PRK13387 1,4-dihydroxy-2-napht 100.0 3.3E-27 7.2E-32 217.0 30.2 213 5-236 15-255 (317)
35 PRK13362 protoheme IX farnesyl 100.0 3.6E-27 7.8E-32 215.6 29.2 230 38-285 49-286 (306)
36 PF01040 UbiA: UbiA prenyltran 100.0 1.6E-27 3.5E-32 212.5 25.3 222 36-276 23-246 (257)
37 TIGR00751 menA 1,4-dihydroxy-2 100.0 2.6E-26 5.6E-31 207.9 31.1 196 35-241 27-235 (284)
38 PRK12871 ubiA prenyltransferas 100.0 1.6E-26 3.5E-31 210.5 29.9 215 42-277 47-278 (297)
39 PRK12872 ubiA prenyltransferas 100.0 4.4E-27 9.6E-32 213.8 25.7 186 39-235 39-226 (285)
40 PRK13591 ubiA prenyltransferas 100.0 5.1E-26 1.1E-30 205.4 25.8 177 42-235 64-244 (307)
41 PLN02776 prenyltransferase 100.0 3E-25 6.5E-30 203.8 30.6 232 37-286 30-267 (341)
42 PRK07419 1,4-dihydroxy-2-napht 99.9 1.3E-24 2.9E-29 198.1 30.8 216 5-241 24-245 (304)
43 TIGR02235 menA_cyano-plnt 1,4- 99.9 5.1E-24 1.1E-28 193.0 31.4 216 5-241 11-232 (285)
44 PLN02922 prenyltransferase 99.9 2.1E-24 4.5E-29 197.9 28.2 219 5-240 27-258 (315)
45 PRK13592 ubiA prenyltransferas 99.9 1.8E-24 3.9E-29 193.8 22.8 177 37-228 47-231 (299)
46 PRK13105 ubiA prenyltransferas 99.9 6.5E-24 1.4E-28 191.5 26.4 178 44-234 38-224 (282)
47 COG1575 MenA 1,4-dihydroxy-2-n 99.9 5.1E-23 1.1E-27 184.3 24.1 195 35-241 43-247 (303)
48 PRK12875 ubiA prenyltransferas 99.9 2.7E-22 5.9E-27 181.3 27.1 169 48-234 57-229 (282)
49 COG0109 CyoE Polyprenyltransfe 99.9 7.4E-23 1.6E-27 182.8 20.9 233 35-284 51-288 (304)
50 PRK12324 phosphoribose diphosp 99.8 1.8E-16 4E-21 144.0 21.9 104 35-144 45-150 (295)
51 PRK08238 hypothetical protein; 99.7 7.8E-16 1.7E-20 148.7 19.6 151 35-203 225-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.3 1.3E-11 2.9E-16 110.4 7.6 224 35-282 126-359 (409)
53 KOG4581 Predicted membrane pro 98.9 7E-10 1.5E-14 95.2 3.8 189 41-241 104-300 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 94.4 0.23 4.9E-06 45.4 8.4 44 41-86 181-224 (303)
55 PRK13387 1,4-dihydroxy-2-napht 93.6 1.3 2.8E-05 41.1 11.9 48 41-91 194-242 (317)
56 PRK13591 ubiA prenyltransferas 93.1 0.65 1.4E-05 42.7 9.1 66 54-122 197-271 (307)
57 PRK12872 ubiA prenyltransferas 91.5 1.7 3.6E-05 39.3 9.7 34 44-77 169-203 (285)
58 PLN02922 prenyltransferase 91.2 1.6 3.4E-05 40.5 9.2 42 43-87 195-237 (315)
59 PRK07419 1,4-dihydroxy-2-napht 90.9 1.7 3.7E-05 40.0 9.2 38 47-87 185-223 (304)
60 PRK13105 ubiA prenyltransferas 90.8 2.3 5E-05 38.7 9.8 57 44-102 168-224 (282)
61 COG0382 UbiA 4-hydroxybenzoate 90.4 4.2 9E-05 37.0 11.3 33 181-213 58-91 (289)
62 PRK12884 ubiA prenyltransferas 89.4 2.6 5.6E-05 38.0 9.0 31 181-212 48-78 (279)
63 TIGR02235 menA_cyano-plnt 1,4- 88.7 3.3 7.1E-05 37.7 9.1 42 47-91 172-214 (285)
64 PRK12875 ubiA prenyltransferas 88.4 12 0.00026 34.0 12.6 51 44-97 173-224 (282)
65 PLN00012 chlorophyll synthetas 88.1 4.7 0.0001 38.3 10.0 32 46-77 262-294 (375)
66 PF01040 UbiA: UbiA prenyltran 87.9 9.5 0.00021 33.3 11.5 34 181-214 34-68 (257)
67 PRK06080 1,4-dihydroxy-2-napht 87.7 4.8 0.0001 36.6 9.7 44 45-91 177-221 (293)
68 TIGR01474 ubiA_proteo 4-hydrox 87.0 5 0.00011 36.4 9.3 36 42-77 166-202 (281)
69 TIGR01476 chlor_syn_BchG bacte 86.9 5.2 0.00011 36.2 9.4 37 47-86 172-209 (283)
70 PRK07566 bacteriochlorophyll/c 86.9 4.8 0.0001 37.2 9.2 31 47-77 200-231 (314)
71 PRK12392 bacteriochlorophyll c 86.7 4.1 8.9E-05 38.0 8.7 33 44-76 188-221 (331)
72 TIGR02056 ChlG chlorophyll syn 86.3 6.1 0.00013 36.3 9.6 38 47-87 194-232 (306)
73 PLN02809 4-hydroxybenzoate non 85.9 11 0.00023 34.5 10.8 31 183-213 58-89 (289)
74 PRK12847 ubiA 4-hydroxybenzoat 85.6 6.3 0.00014 35.7 9.2 36 42-77 171-207 (285)
75 PRK12324 phosphoribose diphosp 84.9 5.1 0.00011 36.7 8.3 40 183-222 59-102 (295)
76 TIGR00751 menA 1,4-dihydroxy-2 84.5 6.8 0.00015 35.6 8.9 40 47-89 175-215 (284)
77 TIGR01475 ubiA_other putative 83.6 6.1 0.00013 35.8 8.2 33 44-76 166-199 (282)
78 PRK13106 ubiA prenyltransferas 83.6 6.4 0.00014 36.1 8.3 35 42-76 183-218 (300)
79 PRK13592 ubiA prenyltransferas 82.2 15 0.00033 33.7 10.0 42 180-222 56-100 (299)
80 PRK09573 (S)-2,3-di-O-geranylg 81.9 10 0.00022 34.3 8.9 43 180-223 47-92 (279)
81 PRK12871 ubiA prenyltransferas 81.7 12 0.00026 34.3 9.3 35 43-77 182-217 (297)
82 PRK12887 ubiA tocopherol phyty 81.0 25 0.00054 32.4 11.2 24 188-212 71-94 (308)
83 PRK12848 ubiA 4-hydroxybenzoat 80.3 17 0.00037 32.9 9.8 35 43-77 169-204 (282)
84 PRK12870 ubiA 4-hydroxybenzoat 80.0 20 0.00044 32.6 10.2 30 183-212 59-89 (290)
85 PRK12882 ubiA prenyltransferas 79.3 11 0.00024 33.8 8.3 40 182-222 50-92 (276)
86 PRK12888 ubiA prenyltransferas 78.8 19 0.00042 32.7 9.7 34 44-77 167-201 (284)
87 PRK12869 ubiA protoheme IX far 78.5 23 0.00049 32.1 10.0 41 181-221 47-91 (279)
88 PRK13595 ubiA prenyltransferas 77.3 41 0.0009 30.8 11.2 21 184-204 61-81 (292)
89 PRK12883 ubiA prenyltransferas 75.7 17 0.00036 32.8 8.3 37 184-221 51-90 (277)
90 PRK12873 ubiA prenyltransferas 75.6 17 0.00037 33.3 8.3 30 183-212 57-87 (294)
91 PRK12886 ubiA prenyltransferas 74.1 30 0.00065 31.5 9.6 33 45-77 171-204 (291)
92 PRK05951 ubiA prenyltransferas 74.0 28 0.00062 31.7 9.5 36 47-84 182-217 (296)
93 PRK12874 ubiA prenyltransferas 73.7 70 0.0015 29.2 11.9 35 43-77 174-209 (291)
94 PF04971 Lysis_S: Lysis protei 69.4 5.3 0.00012 28.1 2.7 64 1-68 1-64 (68)
95 PRK12876 ubiA prenyltransferas 69.0 96 0.0021 28.5 12.3 31 47-77 183-214 (300)
96 TIGR01473 cyoE_ctaB protoheme 68.9 30 0.00066 31.1 8.4 42 181-222 46-91 (280)
97 PRK08238 hypothetical protein; 67.7 26 0.00056 34.5 8.1 41 183-223 239-283 (479)
98 PRK04375 protoheme IX farnesyl 67.6 79 0.0017 28.8 10.9 39 183-221 57-99 (296)
99 PRK12895 ubiA prenyltransferas 67.6 39 0.00086 30.8 8.8 39 184-222 51-93 (286)
100 PRK12878 ubiA 4-hydroxybenzoat 66.7 51 0.0011 30.4 9.5 34 44-77 200-234 (314)
101 PRK13362 protoheme IX farnesyl 65.1 34 0.00073 31.5 8.0 40 181-220 58-101 (306)
102 PLN02776 prenyltransferase 57.7 76 0.0016 29.8 8.9 40 181-220 40-83 (341)
103 PLN02878 homogentisate phytylt 54.5 1E+02 0.0022 28.0 8.9 40 47-89 167-207 (280)
104 cd00867 Trans_IPPS Trans-Isopr 54.5 11 0.00023 32.8 2.6 35 183-217 159-203 (236)
105 PRK04214 rbn ribonuclease BN/u 49.9 2.4E+02 0.0052 27.0 12.4 17 47-63 116-132 (412)
106 PRK11383 hypothetical protein; 47.1 1.6E+02 0.0034 24.0 10.5 15 185-199 118-132 (145)
107 PF09928 DUF2160: Predicted sm 46.6 1.2E+02 0.0026 22.5 7.2 52 185-241 20-71 (88)
108 PRK10581 geranyltranstransfera 46.0 17 0.00037 33.3 2.6 41 182-222 215-266 (299)
109 PF11990 DUF3487: Protein of u 36.4 2.1E+02 0.0046 22.5 7.2 40 63-104 8-51 (121)
110 TIGR03750 conj_TIGR03750 conju 33.0 2.4E+02 0.0051 22.0 7.1 34 63-98 5-38 (111)
111 PF10507 DUF2453: Protein of u 29.2 1.9E+02 0.004 22.6 5.5 49 58-106 58-106 (111)
112 PF04284 DUF441: Protein of un 27.9 2.5E+02 0.0054 22.8 6.3 16 70-85 58-73 (140)
113 COG1295 Rbn Ribonuclease BN fa 27.4 4.8E+02 0.01 23.8 14.4 28 114-142 202-231 (303)
114 PF00348 polyprenyl_synt: Poly 26.7 37 0.0008 30.2 1.5 36 182-217 178-224 (260)
115 COG0142 IspA Geranylgeranyl py 26.4 2E+02 0.0044 26.5 6.4 42 186-228 82-123 (322)
116 PRK06099 F0F1 ATP synthase sub 26.3 3.3E+02 0.0072 21.6 8.7 29 249-278 47-76 (126)
117 PF04341 DUF485: Protein of un 26.0 2.7E+02 0.0059 20.5 6.6 38 30-67 52-89 (91)
118 PRK09669 putative symporter Ya 24.8 3.7E+02 0.0081 25.3 8.2 16 54-69 343-358 (444)
119 PF13748 ABC_membrane_3: ABC t 24.2 2.9E+02 0.0064 24.5 6.6 43 55-97 169-221 (237)
120 PRK08049 F0F1 ATP synthase sub 22.6 3.9E+02 0.0085 21.1 8.8 69 209-277 5-77 (124)
121 CHL00151 preA prenyl transfera 22.3 47 0.001 30.7 1.3 33 182-214 207-250 (323)
122 cd00685 Trans_IPPS_HT Trans-Is 22.0 50 0.0011 29.3 1.4 30 182-211 181-221 (259)
123 PF10777 YlaC: Inner membrane 21.8 2E+02 0.0043 23.6 4.7 25 187-211 116-140 (155)
124 COG0142 IspA Geranylgeranyl py 21.7 43 0.00094 31.0 1.0 34 184-217 208-252 (322)
125 TIGR00267 conserved hypothetic 21.6 4.7E+02 0.01 21.7 9.9 20 40-59 32-51 (169)
126 TIGR02749 prenyl_cyano solanes 20.6 66 0.0014 29.7 2.0 42 45-89 76-117 (322)
127 PF06645 SPC12: Microsomal sig 20.4 3.3E+02 0.0072 19.4 6.1 28 211-238 5-32 (76)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=8.5e-58 Score=405.02 Aligned_cols=279 Identities=57% Similarity=1.012 Sum_probs=253.4
Q ss_pred HHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHH
Q 022643 15 ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMS 94 (294)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~ 94 (294)
|+++.++++.+..+|.++.++.+.+++++++++++.+...+|||+|+|+||+|||+||+|||++|+++++.....+.++|
T Consensus 2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg 81 (280)
T PLN02878 2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS 81 (280)
T ss_pred chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56677778888899999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHH
Q 022643 95 LAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 174 (294)
Q Consensus 95 l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~ 174 (294)
+.+++.+|++++..+...++++++.||.++||+|+||+++++..+....++....+|++.+..++++|++. .++.+.++
T Consensus 82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~-~~~~~~~~ 160 (280)
T PLN02878 82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIF 160 (280)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCcc-ccchhHHH
Confidence 99999999887877767777889999987899999999999998887778888889999887778888643 34445555
Q ss_pred HHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 022643 175 ATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILA 254 (294)
Q Consensus 175 ~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (294)
...++.++..+++++||++|+||||+.|+||+|+++|+|++++++..++.++|...+..|..++..+.......+|.+.+
T Consensus 161 ~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~ 240 (280)
T PLN02878 161 ATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240 (280)
T ss_pred HHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55567778888999999999999999999999999999999999999999999988888988887777788899999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHhhhhccC
Q 022643 255 SIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294 (294)
Q Consensus 255 ~~l~~~~~~~d~~~~~~~~~f~~~~~~l~~~~y~~~~~~~ 294 (294)
..+++|.+++|.+++++..+|||+||++||.||+++|++|
T Consensus 241 ~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 241 SILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.2e-50 Score=370.80 Aligned_cols=282 Identities=33% Similarity=0.601 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHhhhhccccCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHH
Q 022643 8 VFMYQIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 86 (294)
Q Consensus 8 ~~~~t~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~ 86 (294)
+.++|.+++++.++.+.....+. ....+...+..++++..++.+.+.+|||+|+|+||+|||+||+++|++|+++++..
T Consensus 24 t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~ 103 (308)
T PRK12887 24 TIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRI 103 (308)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHH
Confidence 46788888877765553333322 22234444445555555555555599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCcc
Q 022643 87 TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE 166 (294)
Q Consensus 87 ~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~ 166 (294)
..++.++++.+++..|++.+. ..+++.++++.|| .||+|+||+|+.++++++..+|..+.+|.+.+......+..
T Consensus 104 ~~~~~~lal~la~~~~~~~~~-~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~-- 178 (308)
T PRK12887 104 VIITGILALILAALLGPWLLI-TVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSV-- 178 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 999999999999988876544 4467888899999 59999999999999988877887777776553222222221
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 022643 167 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLIT 246 (294)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (294)
.++...++...+.++|+.+++++||++|+|||++.|+||+|+++|+|++++++..++.++|+..+..+......+...++
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~ 258 (308)
T PRK12887 179 LIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFL 258 (308)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 24455566667788899999999999999999999999999999999999999999999999877777666666655666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHhhhhccC
Q 022643 247 IIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294 (294)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~~l~~~~y~~~~~~~ 294 (294)
.++|.+.+.++++|.+++|.+|+++..+|||+||++||.||+++|++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 259 IVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999976
No 3
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-36 Score=272.15 Aligned_cols=250 Identities=17% Similarity=0.176 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHH
Q 022643 6 FFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTG 83 (294)
Q Consensus 6 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a 83 (294)
.++.|.+..|...+...+.+ .++ +..++...++.+++++++|++||++|+|+|++|+| +||+|+|++|++|+
T Consensus 15 ~~a~~~~~~~~~~~~~~~~~---~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a 88 (284)
T PRK12888 15 VFALPFAYIAALTAMFASDG---SVH---WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTA 88 (284)
T ss_pred HHHHHHHHHHHHHHHHHCCC---CCC---HHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHH
Confidence 44556655555443322211 133 33345678899999999999999999999999984 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcC
Q 022643 84 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGR 163 (294)
Q Consensus 84 ~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~ 163 (294)
+.+...+..+++.++..+|+.+.... ..+++....|+. .||++.++++..++..+..+.. ++.+..|.
T Consensus 89 ~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~-----g~~a~~g~ 156 (284)
T PRK12888 89 WTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVG-----AWIAVTGT 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHH-----HHHHHcCC
Confidence 99988888888888888887766544 345555778984 6999988888776554432222 22233343
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 022643 164 PLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANK 243 (294)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (294)
.++..+++.....+|+.+++++|++||+|+|++.|+||+|+++|+|+++++...+..+++..+...+.....++
T Consensus 157 ----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~-- 230 (284)
T PRK12888 157 ----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA-- 230 (284)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH--
Confidence 35555666677889999999999999999999999999999999999998777776677766667777766666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChHHHH-HHH-HHHH
Q 022643 244 LITIIGHGILASIFWLRVRAVDLSDNASIL-SFY-MFIW 280 (294)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~-~f~-~~~~ 280 (294)
.|.++..+.+..+.+|++.+|++|+++|. .|| .|.|
T Consensus 231 -~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ 268 (284)
T PRK12888 231 -LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF 268 (284)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence 44567788899999999999999988775 766 4433
No 4
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-36 Score=271.97 Aligned_cols=226 Identities=18% Similarity=0.121 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643 39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 116 (294)
Q Consensus 39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l 116 (294)
+...++.+++++++|++||+.|+|+|++|+| +||+|+|++|++||+.+..++.++++.+.+++|+.++..+ .....+
T Consensus 40 ~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l 118 (286)
T PRK12895 40 LLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFL 118 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence 3456688899999999999999999999965 9999999999999999999999999998888998876644 345555
Q ss_pred HHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643 117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD 196 (294)
Q Consensus 117 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e 196 (294)
...|+. +||++.++++..+...|..+.. ++.++.|.. +.....++++....+|+.++|++|++||+|
T Consensus 119 ~~~yp~------~KR~t~~~~~~lG~~~g~~~l~-----g~~Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e 185 (286)
T PRK12895 119 FIIDPF------LKRYTAWRHIYMGSIIGLGVLA-----GYLAVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIE 185 (286)
T ss_pred HHHHHH------HHhCccccHHHHHHHHHhHHHH-----HHHHHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 666764 7999999988766554432222 333444431 111233455667889999999999999999
Q ss_pred hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH-HHH
Q 022643 197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSF 275 (294)
Q Consensus 197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~-~~f 275 (294)
+|+|.|+||+|+++|+|++.++...+..++.......|.... + ..|.++..+.+.++.+|++.+|++|+++| .+|
T Consensus 186 ~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~---~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~ 261 (286)
T PRK12895 186 YDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-T---LWYLAALIIIYTLVIYQHLIIDPRNPINKRMSF 261 (286)
T ss_pred hHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999998887776666666666666665543 3 35568888999999999999999999999 666
Q ss_pred HH-HHHHH
Q 022643 276 YM-FIWKL 282 (294)
Q Consensus 276 ~~-~~~~l 282 (294)
|. |.|.+
T Consensus 262 F~~N~~ig 269 (286)
T PRK12895 262 FNANSFIG 269 (286)
T ss_pred HHHcCHHH
Confidence 65 44433
No 5
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.3e-34 Score=260.15 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~ 114 (294)
..+..+++.+++++++|++|||.|+|+|++| +|+||+|+|++|+++++.++.++.+.++.++..+|+.+.... ..+.
T Consensus 37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~ 115 (282)
T TIGR01475 37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVL 115 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 3556788999999999999999999999999 569999999999999999998888878888888887665444 3455
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
++.+.|+. +||++.++++..+...+..+..| +.++.|.. +.....++.....++|+.+++++||+||
T Consensus 116 ~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g-----~~a~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D 182 (282)
T TIGR01475 116 LVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAG-----WVAVIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQD 182 (282)
T ss_pred HHHHHHhh------HhccccccHHHHHHHHHHHHHHH-----HHHHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56889984 79999889987766544333222 22333432 1113445556667889999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS 274 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 274 (294)
+|+|++.|+||+|+++|+|++++.......+++......+...+.++ .|..+..+....+.++.+..|.+|+++|++
T Consensus 183 ~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 259 (282)
T TIGR01475 183 YEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQR 259 (282)
T ss_pred HHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999888877777776666676666555 444566666788889999999999888875
Q ss_pred -HHHH
Q 022643 275 -FYMF 278 (294)
Q Consensus 275 -f~~~ 278 (294)
||.+
T Consensus 260 ~ff~~ 264 (282)
T TIGR01475 260 AFFYA 264 (282)
T ss_pred HHHHH
Confidence 6665
No 6
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=2e-34 Score=261.46 Aligned_cols=221 Identities=19% Similarity=0.189 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF 115 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~ 115 (294)
++...++.+++++++|++||+.|+|+|++|+| +||+|+|++|++||+.+..++.++++.+.+.+|+.+.... ..+.+
T Consensus 47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~ 125 (289)
T PLN02809 47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLL 125 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHH
Confidence 45678899999999999999999999998864 9999999999999999999999999999988887766554 45666
Q ss_pred HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHH-HHHHHHHHHHHHHHHHhhcCC
Q 022643 116 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 116 l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~D 194 (294)
+.+.||. +||++.++++..+...+..+.. ++.++.|. .+.... .++....+|+.++++++++||
T Consensus 126 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~-----g~~av~g~----~~~~~~~~l~~~~~~W~~~~d~~ya~~D 190 (289)
T PLN02809 126 LVFTYPL------MKRFTFWPQAFLGLTFNWGALL-----GWAAVKGS----LDPAVVLPLYASGVCWTLVYDTIYAHQD 190 (289)
T ss_pred HHHHHhH------HHhcCcchHHHHHHHHHHHHHH-----HHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6889984 7999988887765544332222 23344453 233333 255667889999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS 274 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 274 (294)
+|+|+|.|+||+|+++|+|+..++. .+..+++..+...|.....++ .|.+++.+.+..+.+|++.+|++|+++|.+
T Consensus 191 ~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 266 (289)
T PLN02809 191 KEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNR 266 (289)
T ss_pred hhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999555555 455566766667777766665 344688888999999999999999998966
Q ss_pred HHHH
Q 022643 275 FYMF 278 (294)
Q Consensus 275 f~~~ 278 (294)
.|+.
T Consensus 267 ~F~~ 270 (289)
T PLN02809 267 KFVS 270 (289)
T ss_pred HHHh
Confidence 6653
No 7
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.4e-34 Score=259.11 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 112 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~ 112 (294)
+..++...++++.+|+++|++||+.|+|+|++|+| +||+|+|++|++||+.+...+.++++.+...+|+.+...+ ..
T Consensus 46 ~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~-~~ 124 (300)
T PRK12876 46 IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLA-VL 124 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence 44456678899999999999999999999999996 9999999999999999998877888888888998777655 45
Q ss_pred HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccch----HHHHHHHHHHHHHHHHHH
Q 022643 113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAF 188 (294)
Q Consensus 113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~ 188 (294)
+.++.+.||. +||+++++++..+...+..+.. ++.++.+++ .++ ..+++.....+|..++|+
T Consensus 125 ~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~l~-----~~~Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~Di 190 (300)
T PRK12876 125 STLLMIIYPY------TKRVTFLCHWILGLVYYLAILM-----NFFAIIETP---LSFSLFCMASLWGISFGMIIAANDI 190 (300)
T ss_pred HHHHHHHHHh------HhcCCchhHHHHHHHHHHHHHH-----HHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666789984 8999999997765543322222 223344432 222 122333445677779999
Q ss_pred HhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH--HHHHHhhcCC
Q 022643 189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASI--FWLRVRAVDL 266 (294)
Q Consensus 189 i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~d~ 266 (294)
+|++||+|+|++.|+||+|+++|+|++.++......++...+...|.....++ .+|..+..+.+.. +.+|.+.+|.
T Consensus 191 iYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~ 268 (300)
T PRK12876 191 IYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDK 268 (300)
T ss_pred HHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999998877777777677776777787777665 3455555433333 3555577888
Q ss_pred CChHHHHHHHHH
Q 022643 267 SDNASILSFYMF 278 (294)
Q Consensus 267 ~~~~~~~~f~~~ 278 (294)
++++.|++||..
T Consensus 269 ~~~~~~~~~F~~ 280 (300)
T PRK12876 269 KKSTLEQKFFLG 280 (300)
T ss_pred CchHHHHHHHHh
Confidence 889999998875
No 8
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-34 Score=260.93 Aligned_cols=228 Identities=16% Similarity=0.193 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~ 114 (294)
.++..+++.+++++++|++||++|+|+|++|+| +||+|+|++|++|++.+..++.+.++.++..+|+.+.... ..+.
T Consensus 50 ~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~-~~~~ 128 (300)
T PRK13106 50 TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLS-PIVA 128 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 345678899999999999999999999999964 8999999999999999887777777777777887766554 3445
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCcc----ccchHHHHHHHHHHHHHHHHHHHh
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIK 190 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~i~ 190 (294)
++...||. .||++.++++..+...+..+..|+ .++.|.... ..+...++++....+|+.++|++|
T Consensus 129 ~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~-----~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iy 197 (300)
T PRK13106 129 LIAMSYPY------MKRYTAFANYHLASIQGLAVFSGA-----VAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYN 197 (300)
T ss_pred HHHHHHhH------HhcCCcchHHHHHHHHHHHHHHHH-----HHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55778984 799999999887765554333332 233342200 011223444556788999999999
Q ss_pred hcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Q 022643 191 DLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNA 270 (294)
Q Consensus 191 d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~ 270 (294)
++||+|+|+|.|+||+|+++| |+++++...+..++..+....+....+++ .|..+..+...++.+|++.++.+ ++
T Consensus 198 a~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~ 272 (300)
T PRK13106 198 HIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GD 272 (300)
T ss_pred HccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hH
Confidence 999999999999999999999 77888888877777777777777766665 45567778899999999999887 45
Q ss_pred HHHHHHHHHHH
Q 022643 271 SILSFYMFIWK 281 (294)
Q Consensus 271 ~~~~f~~~~~~ 281 (294)
+.++|..|.|.
T Consensus 273 ~~~~F~~n~~i 283 (300)
T PRK13106 273 FGRAFYYNIYS 283 (300)
T ss_pred HHHHHHHccHH
Confidence 55666555443
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=257.05 Aligned_cols=226 Identities=20% Similarity=0.197 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643 36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113 (294)
Q Consensus 36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~ 113 (294)
..++.++++.+++++++|++|||.|+|+|++|+| +||+|+|++|++|++.++..+.++++.+++.+|+.+.... +..
T Consensus 47 ~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~ 125 (291)
T PRK12874 47 KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPF 125 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence 3456678899999999999999999999999985 8999999999999999998888888888888888766554 456
Q ss_pred HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 193 (294)
++....||. +||++.++++.+++.++..+..| +.++.|. .+.+.+++.....+|+.+++++|++|
T Consensus 126 ~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~~l~G-----~~av~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~ 190 (291)
T PRK12874 126 LIVLGGYSY------FKRFSSLAHLVLGLSLGLAPIAG-----VVAVLGE----IPLWSVFLALGVMFWVAGFDLLYSLQ 190 (291)
T ss_pred HHHHHHHhh------hcccccccHHHHHHHHHHHHHHH-----HHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666889995 79999889988776655444333 3344443 34444555566789999999999999
Q ss_pred ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 022643 194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 273 (294)
Q Consensus 194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~ 273 (294)
|+|+|++.|+||+|+++|+|++++................+......+ ++.++..+.+..+.++.+..+.+|++.|+
T Consensus 191 D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (291)
T PRK12874 191 DMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDK 267 (291)
T ss_pred cHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999999999999999988776655444444444444433333 45567777788888998888877777888
Q ss_pred HHHHHHH
Q 022643 274 SFYMFIW 280 (294)
Q Consensus 274 ~f~~~~~ 280 (294)
.||.++.
T Consensus 268 ~ff~sn~ 274 (291)
T PRK12874 268 AFFTLNG 274 (291)
T ss_pred HHHHHHH
Confidence 9877633
No 10
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6.9e-34 Score=258.54 Aligned_cols=226 Identities=16% Similarity=0.199 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~ 114 (294)
..+.++++.+++++++|++||++|+|+|++|+| +||+|+|++|++|+..++.++.++++.++..+|+.+.... +.+.
T Consensus 47 ~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~ 125 (290)
T PRK12870 47 LVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAV 125 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 345677899999999999999999999987664 8999999999999999999999999999988897766544 4556
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
++.+.||. .||++.++++..+..++..+.. ++.+..|. .+...+++....++|+.+++++|++||
T Consensus 126 ~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~-----g~~a~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D 190 (290)
T PRK12870 126 PVIFLYPL------AKRVFPVPQLVLAIAWGFAVLI-----SWSAVTGH----LDLGTWLLWAATVFWTLGFDTVYAMSD 190 (290)
T ss_pred HHHHHhhh------hhhccccceeeehHHHHhHHHH-----HHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66889984 6888877887665554432222 22233343 345555666678899999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc--CCCChHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASI 272 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--d~~~~~~~ 272 (294)
+|+|+|+|+||+|+++|+|++.++.. +..++...+...++....++ .|..+..+....+.+|+..+ |.+|+++|
T Consensus 191 ~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 266 (290)
T PRK12870 191 REDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAY 266 (290)
T ss_pred HhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHH
Confidence 99999999999999999998877665 34445555556677666554 34467778889999999888 77788888
Q ss_pred HHHHH-HHHHH
Q 022643 273 LSFYM-FIWKL 282 (294)
Q Consensus 273 ~~f~~-~~~~l 282 (294)
++||. |.|.+
T Consensus 267 ~~~F~~n~~~g 277 (290)
T PRK12870 267 GQLFLQNVWIG 277 (290)
T ss_pred HHHHHHhhHHH
Confidence 77776 44444
No 11
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-33 Score=253.75 Aligned_cols=236 Identities=23% Similarity=0.341 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 112 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~ 112 (294)
+...+.+.++++++++++|++||+.|+|+||+|+| +||+|+|++|+++++.+..++.++++.+++.+|++++... +.
T Consensus 46 ~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~ 124 (289)
T COG0382 46 LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LA 124 (289)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence 55667788899999999999999999999999999 9999999999999999999999999999999998775544 67
Q ss_pred HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643 113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192 (294)
Q Consensus 113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 192 (294)
+.++.+.|+ ++||.+.+++.+.+...+.....| ..+..|. .+...+++.....+|+.+++++||+
T Consensus 125 ~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g-----~~a~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~ 189 (289)
T COG0382 125 ALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAG-----AAAVGGS----LPLLAWLLLLAAILWTLGYDIIYAI 189 (289)
T ss_pred HHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHH-----HHHHhCc----cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899996 489999999998876655433322 2233332 2445566777788999999999999
Q ss_pred CChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Q 022643 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI 272 (294)
Q Consensus 193 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~ 272 (294)
+|+|+|++.|+||+|+.+|+|++..+..... .....+..++....... ..+..+..+....+.+|...+|.+|++.|
T Consensus 190 ~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (289)
T COG0382 190 QDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPAC 266 (289)
T ss_pred cCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence 9999999999999999999999999888766 44444555555544332 35667788888999999999999899999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022643 273 LSFYMFIWKLYYAEYLL 289 (294)
Q Consensus 273 ~~f~~~~~~l~~~~y~~ 289 (294)
+++|......-...++.
T Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (289)
T COG0382 267 FALFDVNLLLGLLLFIG 283 (289)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 99988766555544443
No 12
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=250.62 Aligned_cols=227 Identities=18% Similarity=0.151 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~ 114 (294)
.+....++.+++++++|++|||+|+|+|++|+| +||+++|++|++||..+...+.+.++.+....|+++..+. +.+.
T Consensus 43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~ 121 (291)
T PRK12886 43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLS-PPAL 121 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345667899999999999999999999999985 8999999999999998876666666666677887766554 3455
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
+....||. +||++.++++..+..++..+.. ++.+..|. .+...+++.....+|+.+++++++++|
T Consensus 122 ~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~-----g~~a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D 186 (291)
T PRK12886 122 FFLLLYSY------CKRFTALAHVVLGFCLALAPLG-----AWIAIRGT----IELPAILLGLAVLFWVAGFDILYALQD 186 (291)
T ss_pred HHHHHHhh------hhccccccHHHHHHHHHHHHHH-----HHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56889994 6999988888776654433322 22233342 355556666677899999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCh-HHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASIL 273 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~ 273 (294)
+|+|+|+|+||+|+++|+|+++++......+.+......+.....++ .|.++..+....+.++.+..+.+|+ +.|+
T Consensus 187 ~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (291)
T PRK12886 187 LEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDA 263 (291)
T ss_pred HHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 99999999999999999999998876666566665555555555444 4455666777777788888888874 5676
Q ss_pred H-HHHHHHHH
Q 022643 274 S-FYMFIWKL 282 (294)
Q Consensus 274 ~-f~~~~~~l 282 (294)
+ |..++|.+
T Consensus 264 ~~F~~~~~~~ 273 (291)
T PRK12886 264 AFFNMNGYIS 273 (291)
T ss_pred HHHHHhHHHH
Confidence 6 55566655
No 13
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=8.8e-33 Score=250.68 Aligned_cols=225 Identities=16% Similarity=0.159 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF 115 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~ 115 (294)
.+..+++.+++++++|++||++|+|+|++|+| +||+|+|++|++|++.++.++..+++.+++.+|+.+.... +.+.+
T Consensus 44 ~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~ 122 (282)
T PRK12848 44 LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALA 122 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHH
Confidence 45567888999999999999999999997764 8999999999999999999999999988888887666544 45566
Q ss_pred HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCCh
Q 022643 116 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDV 195 (294)
Q Consensus 116 l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~ 195 (294)
..+.|+. .||++.++++..++..|..+..++ .+..| ..+...+++.....+|+...++++++||+
T Consensus 123 ~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~-----~a~~~----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~ 187 (282)
T PRK12848 123 LAWIYPF------MKRYTHLPQVVLGAAFGWGIPMAF-----AAVQG----SVPLEAWLLFLANILWTVAYDTQYAMVDR 187 (282)
T ss_pred HHHHHHh------HHhcCcccHHHHHHHHHHHHHHHH-----HHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 6889973 688887788776655553332222 22233 23555666667788999999999999999
Q ss_pred HhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 022643 196 DGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF 275 (294)
Q Consensus 196 e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f 275 (294)
|+|+++|+||+|+++|+|++.+.... ..+....+...++....++ .|.++..+....+.++++.+|.+|+++|+++
T Consensus 188 e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (282)
T PRK12848 188 DDDLKIGIKSTAILFGRYDKLIIGLL-QLATLALLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKA 263 (282)
T ss_pred hhHHHcCCccccHHhccccHHHHHHH-HHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999988777643 3344444444555544443 4557777889999999999999888877555
Q ss_pred H-HHHHHH
Q 022643 276 Y-MFIWKL 282 (294)
Q Consensus 276 ~-~~~~~l 282 (294)
| .+.|.+
T Consensus 264 F~~n~~~g 271 (282)
T PRK12848 264 FLNNNWVG 271 (282)
T ss_pred HHhCcHHH
Confidence 5 445544
No 14
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=1.8e-32 Score=248.53 Aligned_cols=226 Identities=17% Similarity=0.180 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF 115 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~ 115 (294)
.+..+++.+++++++|++|||+|+|.|++|+| +||+|+|++|++|++.++.++.++++.+++.+|+.+.... +.+.+
T Consensus 42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~ 120 (281)
T TIGR01474 42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLA 120 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHH
Confidence 45567788999999999999999999997764 8999999999999999999999999999888887766544 56677
Q ss_pred HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCCh
Q 022643 116 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDV 195 (294)
Q Consensus 116 l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~ 195 (294)
+.+.||. .||++.++++..++..+..+..|+ .++.|. .+...+++.....+|+.+++++|++||+
T Consensus 121 ~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~-----~a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~ 185 (281)
T TIGR01474 121 LVATYPF------MKRITYWPQLVLGLAFGWGALMGW-----AAVTGD----LSTAAWVLYLANILWTLGYDTIYAMQDK 185 (281)
T ss_pred HHHHhch------hcccccccHHHHHHHHHHHHHHHH-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7999984 799988888776654443333332 233443 3455555556678899999999999999
Q ss_pred HhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 022643 196 DGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF 275 (294)
Q Consensus 196 e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f 275 (294)
|+|+|+|+||+|+++|+|++++.... ..++.....+.+.....++ .|.++..+....+.++...+|.+|+++|+++
T Consensus 186 e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (281)
T TIGR01474 186 EDDIKIGVKSTALRFGDNTKPWLGGL-YALMILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKL 261 (281)
T ss_pred HhHHHcCCCcccHHhhhhhHHHHHHH-HHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999986555443 3333333344444444444 4446777888899999999888888877766
Q ss_pred HH-HHHHHH
Q 022643 276 YM-FIWKLY 283 (294)
Q Consensus 276 ~~-~~~~l~ 283 (294)
|. +.+.+.
T Consensus 262 F~~~~~~~~ 270 (281)
T TIGR01474 262 FKANNYVGL 270 (281)
T ss_pred HHHhhHHHH
Confidence 65 444443
No 15
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.9e-33 Score=250.08 Aligned_cols=227 Identities=20% Similarity=0.224 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG 117 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~ 117 (294)
.+..+++.+++++++|++||++|+|+|++|+|+||+++|++|++|++.++.++.++++.+++.+|+...... ..+.++.
T Consensus 40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~ 118 (276)
T PRK12882 40 TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLL 118 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999988887665444 4556668
Q ss_pred HHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643 118 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197 (294)
Q Consensus 118 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~ 197 (294)
+.|+. |+||++.++|+.++...|.....| . +..+.. .....+......++|+.+++++||+||+|+
T Consensus 119 ~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g-----~-~~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~ 184 (276)
T PRK12882 119 VLYAE-----TLKGTPGLGNASVAYLTGSTFLFG-----G-AAVGTE---GLLALLVLFALAALATLAREIIKDVEDIEG 184 (276)
T ss_pred HHHHH-----HHhcccchhHHHHHHHHHHHHHHH-----H-HHhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 89984 689999888887765444332222 1 122321 122333444555677889999999999999
Q ss_pred hHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHH-HHHHHHHHhhcCCCChHHHHHH
Q 022643 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA-SSPFLANKLITIIGHGIL-ASIFWLRVRAVDLSDNASILSF 275 (294)
Q Consensus 198 D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~d~~~~~~~~~f 275 (294)
|+++|+||+|+++|+|+++++......+..... ..++ ....++ .|.....+. ...+.++.+..|.+|++.|+++
T Consensus 185 D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 260 (276)
T PRK12882 185 DRAEGARTLPILIGVRKALYVAAAFLLVAVAAS-PLPYLLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKL 260 (276)
T ss_pred HHHcCCccccHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999988776654443322 2222 222333 333444344 4444456677788888877665
Q ss_pred HH-HHHHHH
Q 022643 276 YM-FIWKLY 283 (294)
Q Consensus 276 ~~-~~~~l~ 283 (294)
|. ++|-+.
T Consensus 261 f~~~~~~g~ 269 (276)
T PRK12882 261 LKYGMFLAL 269 (276)
T ss_pred HHHHHHHHH
Confidence 54 455443
No 16
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.6e-33 Score=250.74 Aligned_cols=230 Identities=15% Similarity=0.026 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAV 110 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l----~~~~~~~~~ 110 (294)
..+.++++..++++++|++||+.|+|+|++|+| +||+|+|++|++||+.+..++.++++.+.+.+ |+.+..++
T Consensus 45 ~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~- 123 (294)
T PRK12873 45 LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA- 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-
Confidence 456788999999999999999999999999886 99999999999999999999999988887665 44555444
Q ss_pred HHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHh
Q 022643 111 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIK 190 (294)
Q Consensus 111 ~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (294)
..+++....||. +||++.+.++..++..+..+.. ++.++.|+. +.....++++...++|+.++|+++
T Consensus 124 ~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~-----gw~Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iy 190 (294)
T PRK12873 124 FLALPPILIYPS------AKRWFAYPQAILALCWGFAVLI-----PWAAAEGSL--NGGWPLLFCWLATLLWTFGFDTVY 190 (294)
T ss_pred HHHHHHHHHHHH------HHhccccchHHHHHHHHhHHHH-----HHHHHhCCC--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556889984 7999888887766554433322 233455542 111233444467889999999999
Q ss_pred hcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCC--
Q 022643 191 DLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD-- 268 (294)
Q Consensus 191 d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-- 268 (294)
++||+|+|+|.|+||+|+++|++ +++....+..++...+...|....+++ .|.++..+.+..+.+|++.+|++|
T Consensus 191 A~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~ 266 (294)
T PRK12873 191 AMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQS 266 (294)
T ss_pred HHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 99999999999999999999975 555556666677777778888877776 455777888899999999999987
Q ss_pred hHHH-HHHHHHHHHHHH
Q 022643 269 NASI-LSFYMFIWKLYY 284 (294)
Q Consensus 269 ~~~~-~~f~~~~~~l~~ 284 (294)
+++| +.|..|.|.+..
T Consensus 267 ~~~c~~~F~~n~~~G~~ 283 (294)
T PRK12873 267 IKTIGNHFSNQVILGSL 283 (294)
T ss_pred HHHHHHHHHhccHHHHH
Confidence 4777 555556666553
No 17
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-32 Score=245.83 Aligned_cols=227 Identities=20% Similarity=0.279 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 116 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l 116 (294)
..+...++.+++++++|++||++|+|+|++|+|+||+++|++|+++++..+.++.++++.++..+|+...... +.+.++
T Consensus 38 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 116 (279)
T PRK12884 38 EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVL 116 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence 3456678999999999999999999999999999999999999999999999999999999888887665444 566677
Q ss_pred HHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643 117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD 196 (294)
Q Consensus 117 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e 196 (294)
++.||. ++||+++.+++.++..++.....+ +.+. +.. +...+++....++|+.++++++|++|+|
T Consensus 117 ~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g-----~~~~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e 181 (279)
T PRK12884 117 GILYNW-----KLKEYGLIGNLYVAFLTGMTFIFG-----GIAV-GEL----NEAVILLAAMAFLMTLGREIMKDIEDVE 181 (279)
T ss_pred HHHHHH-----hhccccchhHHHHHHHHHHHHHHH-----HHHh-CCC----chHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899995 479999888888776655333222 2222 221 2234444456678888999999999999
Q ss_pred hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH-hhcCCCChHHHHHH
Q 022643 197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF 275 (294)
Q Consensus 197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f 275 (294)
+|++.|+||+|+++|+|+++++........++...........++ .|.....+....+.++. +..+.+|+++++++
T Consensus 182 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 182 GDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred hHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999999999999887766555554333333322333 44455556667777775 55666677777776
Q ss_pred HHHHHHH
Q 022643 276 YMFIWKL 282 (294)
Q Consensus 276 ~~~~~~l 282 (294)
..+.+..
T Consensus 259 ~~~~~~~ 265 (279)
T PRK12884 259 RKITLTA 265 (279)
T ss_pred HHHHHHH
Confidence 4443333
No 18
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-32 Score=245.10 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643 36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113 (294)
Q Consensus 36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~ 113 (294)
...+.++++++++++++|++|||+|+|.|++|+| +||+++|++|++|++.++.++.++++.+++.+|+...... +.+
T Consensus 45 ~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~ 123 (285)
T PRK12847 45 SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIA 123 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence 3456678899999999999999999999998764 8999999999999999999999999988888887666544 566
Q ss_pred HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 193 (294)
.+..+.||. .||++.++++..++..+..+.. ++.+..|. .+...++.....++|+.++++++++|
T Consensus 124 ~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~l~-----~~~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~ 188 (285)
T PRK12847 124 VILIVLYPL------MKRFFYWPQLFLGFTFNMGILM-----AFAAVQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQ 188 (285)
T ss_pred HHHHHhccc------cccCCcccHHHHHHHHHHHHHH-----HHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667899984 6888877887765544422222 22233332 45556666677889999999999999
Q ss_pred ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 022643 194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 273 (294)
Q Consensus 194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~ 273 (294)
|+|+|+|+|+||+|+++|+|++.++........+. ....++...... .+| +...+....+.++...+|.+|+++|+
T Consensus 189 D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~ 264 (285)
T PRK12847 189 DKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL-WLILGIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCM 264 (285)
T ss_pred cHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH-HHHHHHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999998887766544433 334444444332 233 34455667888999999988887765
Q ss_pred HHH-HHHHHHHH
Q 022643 274 SFY-MFIWKLYY 284 (294)
Q Consensus 274 ~f~-~~~~~l~~ 284 (294)
+.| .+.+.++.
T Consensus 265 ~~f~~~~~~~~l 276 (285)
T PRK12847 265 YAFKANHYVGLL 276 (285)
T ss_pred HHHHHhHHHHHH
Confidence 554 45555543
No 19
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=3.8e-32 Score=250.36 Aligned_cols=209 Identities=21% Similarity=0.326 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHH
Q 022643 42 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWI 114 (294)
Q Consensus 42 ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~-------~~~~~~~~~~~ 114 (294)
++...+..+++|++|||+|+|+|++|+|+||+++|++|++|++....++.++++.++..++. +.+....+.+.
T Consensus 56 ~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l 135 (331)
T PRK12392 56 LMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGL 135 (331)
T ss_pred HHHHHHHHHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 34445566789999999999999999999999999999999999999888888877766542 22333334667
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
+++++||. ||+|+||+++.++..+++.++..... .+.+..|. .+...++.....++|+.+++++||++|
T Consensus 136 ~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~-----~~~a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D 204 (331)
T PRK12392 136 FVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFL-----SANALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKS 204 (331)
T ss_pred HHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHH-----HHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 78999994 89999999887777665544432211 12233442 344555555667889999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV 264 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (294)
+|+|++.|+||+|+++|+|+++++......+.....+..+.....++ .+.....+.+..+.+|.+..
T Consensus 205 ~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 205 VEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred hhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887766566666666666666654 22344556666777777653
No 20
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.7e-32 Score=248.75 Aligned_cols=226 Identities=16% Similarity=0.114 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~ 114 (294)
..+.++++.+++++++|++|||+|+|+|++|+| +||+++|++|++|++.+..++.++++.+.+..|++..... +.+.
T Consensus 73 ~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~ 151 (314)
T PRK12878 73 HLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASL 151 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 456678899999999999999999999998774 8999999999999999999999999988888887665544 5666
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
+..+.||. .||++.+++...+...+.....|+ .+..|. ++...++++....+|+..++.++++||
T Consensus 152 ~~~~~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~-----~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D 216 (314)
T PRK12878 152 AIVAAYPF------MKRITWWPQFFLGLAFSWGALMGW-----AAHFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQD 216 (314)
T ss_pred HHHHHHHH------HHhcCCcchHHHHHHHHHHHHHHH-----HHHhCC----CchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77899984 798877776655443332222222 223342 345555666677889999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS 274 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 274 (294)
+|+|+|+|+||+|+++|+|++++...... +......+.+.....++ .|.++.......+.+|..++|.+|+++|++
T Consensus 217 ~e~D~~aGi~slpv~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (314)
T PRK12878 217 KEDDALIGVKSTARLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLR 292 (314)
T ss_pred HhhHHHcCCcccchHhchhhHHHHHHHHH-HHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHH
Confidence 99999999999999999999988775444 33333334444444444 344555566677889999998888887877
Q ss_pred HHHH-HHHH
Q 022643 275 FYMF-IWKL 282 (294)
Q Consensus 275 f~~~-~~~l 282 (294)
+|.. ++.+
T Consensus 293 ~F~~n~~~~ 301 (314)
T PRK12878 293 LFKSNRDAG 301 (314)
T ss_pred HHHHhHHHH
Confidence 7763 4443
No 21
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=4.7e-32 Score=246.18 Aligned_cols=184 Identities=22% Similarity=0.300 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG 117 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~ 117 (294)
++.++++..+.++++|.+|||+|+|+|++|+|+||+++|++|++|++....++..+++.++..++.+......+.+.+.+
T Consensus 40 ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 119 (283)
T TIGR01476 40 LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLA 119 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467788999999999999999999999999999999999999999999999999998888877665333345667779
Q ss_pred HHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643 118 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197 (294)
Q Consensus 118 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~ 197 (294)
+.|| .||+|+||+++++++.+++..+.. ++.. + ....+. .++..++.....++++.+++++||+||+|+
T Consensus 120 ~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~---~~~~-~-~~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~ 188 (283)
T TIGR01476 120 VIYS--MPPIKLKRNGWLGPPAVGLSYEGL---PWMA-G-HAIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEG 188 (283)
T ss_pred heec--CchhhhccCCCccHHHHHHHHHHH---HHHH-H-HHHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999 589999999988888776543322 1111 1 122232 344444445556778888999999999999
Q ss_pred hHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHH
Q 022643 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 232 (294)
Q Consensus 198 D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~ 232 (294)
|+++|+||+|+++|+|++++++..+..+++...+.
T Consensus 189 D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 189 DRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred HHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877666654443
No 22
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=241.71 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 116 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l 116 (294)
..+.++++.+++++++|++|||+|+|+|++|+|+||+|+|++|++|++.++.++.++++.++..+|+.+.... +.+.++
T Consensus 38 ~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~ 116 (279)
T PRK09573 38 GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSIL 116 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999888887766544 456666
Q ss_pred HHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643 117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD 196 (294)
Q Consensus 117 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e 196 (294)
.+.||. ++||++.++|+.++...|..+..|+ .++.+ . ...+++....++|+.+++++||+||+|
T Consensus 117 ~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~-----~~~~~-~-----~~~~~l~~~~f~~~~~~~~~~~~~D~~ 180 (279)
T PRK09573 117 LYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGG-----LAVFN-V-----LRIIILFLCAFFSTWSREIVKDIEDIE 180 (279)
T ss_pred HHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHH-----HHHcc-c-----hHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 889984 4799998899888766665443332 22322 1 122334445667888899999999999
Q ss_pred hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHH-hhcCCCChHHHHH
Q 022643 197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP-FLANKLITIIGHGILASIFWLRV-RAVDLSDNASILS 274 (294)
Q Consensus 197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~ 274 (294)
+|++.|+||+|+++|+|+++++......+...... ...... .++ .|..+..+....+.++. +..+.+|+++|+.
T Consensus 181 ~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 256 (279)
T PRK09573 181 GDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP-LPYFLGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASK 256 (279)
T ss_pred hHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999887665544433322 222211 223 45556566666677774 3445556665544
Q ss_pred H-HHHHHHHH
Q 022643 275 F-YMFIWKLY 283 (294)
Q Consensus 275 f-~~~~~~l~ 283 (294)
- ....+..+
T Consensus 257 ~~~~~~~~m~ 266 (279)
T PRK09573 257 ASKYLKIIMI 266 (279)
T ss_pred HHHHHHHHHH
Confidence 3 33444444
No 23
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=245.26 Aligned_cols=182 Identities=24% Similarity=0.343 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022643 39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 118 (294)
Q Consensus 39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~ 118 (294)
+..+++..++++++|.+|||+|+|+|++|+|+||+++|++|++|++..+.++.++++.+++.+|++...+. +.+.+.++
T Consensus 68 l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~ 146 (314)
T PRK07566 68 AGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAW 146 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999988888887655433 56677789
Q ss_pred HhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhh
Q 022643 119 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGD 198 (294)
Q Consensus 119 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D 198 (294)
.|| .||+++||+++++++.++...|.++... +..+..++ ..++..++......++..+++++||++|+|+|
T Consensus 147 ~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~----g~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D 217 (314)
T PRK07566 147 IYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA----GAAAFGAG---LPSWPIVILALLYSLGAHGIMTLNDFKSVEGD 217 (314)
T ss_pred Hhc--CCccccccccchhhHHHHHHHHHHHHHH----HHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 999 4899999999888888766544322211 22223322 23444555555566777888999999999999
Q ss_pred HhcCCccchhhccHHHHHHHHHHHHHHHHHHH
Q 022643 199 KKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 230 (294)
Q Consensus 199 ~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~ 230 (294)
+++|+||+|+++|+|+++++...+..+.+...
T Consensus 218 ~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 218 RQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877766666643
No 24
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2.9e-30 Score=233.82 Aligned_cols=230 Identities=15% Similarity=0.143 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWI 114 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~-l~~~~~~~~~~~~~ 114 (294)
.+...++.+++++++|++|||.|+|+|++|+ |+||+|+|++|++||..++..+.++++.++.. +|+.+.....+...
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 117 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWF 117 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999999988 59999999999999999999999999988877 77654333334555
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
+..+.||. ++||++....+..+. .|....++.+ .+..|. .+...+++....++|+.++....+++|
T Consensus 118 ~~~~~Yt~-----~lKr~~~~~~~v~~~-~g~~~~l~g~----~a~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d 183 (279)
T PRK12869 118 FYAVVYTI-----WLKPRTWLNIVIGGF-AGNAAALAGY----ASGTGS----LDLEAVLLSFLIYLWTPGHIWSLALKY 183 (279)
T ss_pred HHHhhhCc-----ccccCChHHHHHHHH-HHHHHHHHHH----HHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788985 479999864444333 3333333222 223332 355555555667789888877788899
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHHHHhhcCCCChHHH-
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHG-ILASIFWLRVRAVDLSDNASI- 272 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~d~~~~~~~- 272 (294)
+|||+++|+||+|+++|+|++++.......+........+. ...++ .|..... ..+..+.++.+..+.+|+++|
T Consensus 184 ~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 259 (279)
T PRK12869 184 REDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAW 259 (279)
T ss_pred HHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Confidence 99999999999999999999998876665444433333332 23333 3333433 334455566666665555555
Q ss_pred HHHHHHHHHHHHH
Q 022643 273 LSFYMFIWKLYYA 285 (294)
Q Consensus 273 ~~f~~~~~~l~~~ 285 (294)
+.|..++|++...
T Consensus 260 ~~f~~s~~~l~~~ 272 (279)
T PRK12869 260 KMFKASSPYLALF 272 (279)
T ss_pred HHHHHHHHHHHHH
Confidence 5577788887654
No 25
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.98 E-value=3.9e-30 Score=235.67 Aligned_cols=181 Identities=25% Similarity=0.399 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVI 111 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~------~~~~~~~~ 111 (294)
++.+++++.++++++|.+|||+|+|.|+.|+|+||+++|++|+++++..+..+..+++.++..+.. +......+
T Consensus 56 ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~ 135 (306)
T TIGR02056 56 ALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL 135 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 445567889999999999999999999999999999999999999999988888888877765431 22223335
Q ss_pred HHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhh
Q 022643 112 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 191 (294)
Q Consensus 112 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 191 (294)
.+.+.++.|| .||+|+||++.+|++.++...+.. +++. + .+..|. +++..++.....++|+.++++.||
T Consensus 136 ~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~---~~~~-~-~a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~ 204 (306)
T TIGR02056 136 FGSFIAFIYS--APPLKLKQNGWLGNFALGASYIAL---PWWA-G-HALFGE----LNPDIAVLTLIYSIAGLGIAIVND 204 (306)
T ss_pred HHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHH---HHHH-H-HHHhCC----CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777799999 489999999988887765443322 2221 1 122342 345555555566778889999999
Q ss_pred cCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHH
Q 022643 192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA 229 (294)
Q Consensus 192 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~ 229 (294)
++|+|+|++.|+||+|+++|+|+++++...+...++..
T Consensus 205 ~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~ 242 (306)
T TIGR02056 205 FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGL 242 (306)
T ss_pred ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776665554
No 26
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.98 E-value=9.2e-30 Score=237.66 Aligned_cols=230 Identities=21% Similarity=0.307 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPFIWAV 110 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~~~~ 110 (294)
++..+++..++++++|.+|||+|+|+|++|+|+||+++|++|+++++.....+..+++.+++.+ +++.+ ...
T Consensus 125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~-~l~ 203 (375)
T PLN00012 125 IVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF-YLA 203 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHH
Confidence 4566778889999999999999999999999999999999999999997766666666666544 22222 223
Q ss_pred HHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHh
Q 022643 111 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIK 190 (294)
Q Consensus 111 ~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (294)
+.+.+++++|| .||+++||++++|++..+...+ .+|++. + .++.|. ++...++.....++|+.+++++|
T Consensus 204 l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~---~lp~~~-g-~a~~g~----~s~~~illal~~~l~~lai~ivn 272 (375)
T PLN00012 204 LGGSLLSYIYS--APPLKLKQNGWIGNYALGASYI---SLPWWA-G-QALFGT----LTPDVVVLTLLYSIAGLGIAIVN 272 (375)
T ss_pred HHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHH---HHHHHH-H-HHHcCC----CCHHHHHHHHHHHHHHHHHHHHh
Confidence 45667799999 4899999999988877554333 233321 1 133443 45555555566778888999999
Q ss_pred hcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHHHHHHhhcCCCCh
Q 022643 191 DLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITI-IGHGILASIFWLRVRAVDLSDN 269 (294)
Q Consensus 191 d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~~ 269 (294)
|++|+|+|++.|+||+|+++|+|++++++...+.+.... ..++...... .+|. +........+.++.+ ...+||
T Consensus 273 d~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~--~~~~l~~~~~--~~y~~~~~~l~l~~l~~~~~-~~~~~p 347 (375)
T PLN00012 273 DFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLS--VAGYLLAIGK--PYYALALLGLIIPQIFFQFK-YFLPDP 347 (375)
T ss_pred hhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHH--HHHHHHHHhH--HHHHHHHHHHHHHHHHHHHH-HHhcCH
Confidence 999999999999999999999999999876544333332 2232222111 1221 222222333333333 333588
Q ss_pred HHHHHHHHHHHHHHH
Q 022643 270 ASILSFYMFIWKLYY 284 (294)
Q Consensus 270 ~~~~~f~~~~~~l~~ 284 (294)
+++...|...-..++
T Consensus 348 ~~~~~~~~~~a~~~~ 362 (375)
T PLN00012 348 VKNDVKYQASAQPFL 362 (375)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776444443
No 27
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.98 E-value=3.4e-30 Score=235.18 Aligned_cols=231 Identities=15% Similarity=0.093 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAW 113 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~-l~~~~~~~~~~~~ 113 (294)
..+..+++.+++++++|++|||+|+|+|++|+ |+||+|+|++|++|++.++.++.++++.+++. .|+.+.....+..
T Consensus 45 ~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~ 124 (296)
T PRK04375 45 LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGI 124 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34567889999999999999999999999988 59999999999999999999999889888754 4655554332222
Q ss_pred HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 193 (294)
....+.||. ++||++. ++..++...+....+ .++.++.|. .+...+++.....+|+..++..++++
T Consensus 125 ~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l----~g~~a~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~ 190 (296)
T PRK04375 125 FFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL----IGWAAVTGS----LSWEALILFLIIFLWTPPHFWALAIF 190 (296)
T ss_pred HHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH----HHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678984 4899996 454444332322211 122233332 35555666677889999999999999
Q ss_pred ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Q 022643 194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGAS-SPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI 272 (294)
Q Consensus 194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~ 272 (294)
|+|||+++|+||+|+++|+|++++.......+.... .++... ...++ .++..+.......+.++.+..+.+|+++|
T Consensus 191 d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (296)
T PRK04375 191 RKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV-SLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWA 267 (296)
T ss_pred HHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH-HHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHH
Confidence 999999999999999999999888766544333322 222222 22333 23333444556667777888877777655
Q ss_pred -HHHHHHHHHHHH
Q 022643 273 -LSFYMFIWKLYY 284 (294)
Q Consensus 273 -~~f~~~~~~l~~ 284 (294)
+.|+.++|.+..
T Consensus 268 ~~~F~~s~~~~~~ 280 (296)
T PRK04375 268 RKLFRYSINYLTL 280 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 666677766644
No 28
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=1.8e-29 Score=230.32 Aligned_cols=254 Identities=13% Similarity=0.148 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcC-----CCCcccccccC
Q 022643 5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----PYLPLASGEIS 79 (294)
Q Consensus 5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~-----p~Rpi~sG~is 79 (294)
++.++....+|...+. . ...+++ +...+.++++++++|.++|.+|||+|+|.|+.|+ |+||+++|++|
T Consensus 16 l~~s~~~v~lG~a~a~--~--~~~~f~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is 88 (296)
T PRK05951 16 FVMTAIVAFFSIAYGY--Y--LFRSFD---PLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMT 88 (296)
T ss_pred HHHHHHHHHHHHHHHH--H--hcCCcC---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcC
Confidence 3445555556653332 1 112344 3445667889999999999999999966555554 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHH
Q 022643 80 MGTGIAITLASALMSLAYAV----MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 155 (294)
Q Consensus 80 ~~~a~~~~~~~~~~~l~l~~----~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~ 155 (294)
++|++..+.++..+++.++. ..+++.+ ...+++.+.++.|| .||+++|++++ |++.++..+|....+|.+.
T Consensus 89 ~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l-~l~~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~- 163 (296)
T PRK05951 89 LGHLRVLGIALGAIALQLGWSLVLDRGIGAV-TLALLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIY- 163 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-
Confidence 99999988877666654433 2343333 33467788899999 58999998875 7877776667555555432
Q ss_pred HHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022643 156 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 235 (294)
Q Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~ 235 (294)
++++. .+...+.......+++.....+||+||+|+|++.|+||+|+++|+|++ +........+|...+....
T Consensus 164 ----~~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~ 235 (296)
T PRK05951 164 ----VWLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLI 235 (296)
T ss_pred ----HHhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 33332 344455555556677777889999999999999999999999999999 6655556566665444433
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 022643 236 SSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 278 (294)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 278 (294)
....++....+.+++......+.++.+..|.+++.++.+.+..
T Consensus 236 ~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 236 AILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 3222222234455555556666677777776666666666554
No 29
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.97 E-value=3.9e-29 Score=226.69 Aligned_cols=232 Identities=18% Similarity=0.122 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAW 113 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~~~~~~~ 113 (294)
..+...++.+++++++|++|||+|+|.|++|+ |+||+++|++|++|+..++.++.++++.+. ...|+...... ..+
T Consensus 36 ~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~ 114 (280)
T TIGR01473 36 LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFG 114 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence 34567789999999999999999999999977 599999999999999999999998888844 45776555433 344
Q ss_pred HH-HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643 114 IF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192 (294)
Q Consensus 114 ~~-l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 192 (294)
.+ ..+.||. .+||++..+.+..++ .|....++.+ .+..|. .+...+++.....+|+...+...++
T Consensus 115 ~~~~~~~Yt~-----~lKr~~~~~~~v~~~-~g~~~~l~g~----~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~ 180 (280)
T TIGR01473 115 IFFYVIVYTI-----WLKRRTPQNTVIGGF-AGAVPPLIGW----AAVTGS----ISLGAWLLFAIIFLWQPPHFWALAL 180 (280)
T ss_pred HHHHHhhcCh-----hhccCCchhHHHHHH-HHHHHHHHHH----HHhcCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4789994 279988765555443 3333322222 222232 3555555666778898888778889
Q ss_pred CChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCC-ChHH
Q 022643 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DNAS 271 (294)
Q Consensus 193 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~-~~~~ 271 (294)
+|+|||+++|+||+|+++|+|++++................+.....++ .++..+..+....+.++.+..|.+ |+++
T Consensus 181 ~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~ 258 (280)
T TIGR01473 181 KYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKK 258 (280)
T ss_pred HhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999999999999998887766554333333333333334444 344456666677777888778766 6654
Q ss_pred -HHHHHHHHHHHHHH
Q 022643 272 -ILSFYMFIWKLYYA 285 (294)
Q Consensus 272 -~~~f~~~~~~l~~~ 285 (294)
.+.|+.+++.+...
T Consensus 259 ~~~~f~~s~~~~~~~ 273 (280)
T TIGR01473 259 ARKLFKFSLIYLALL 273 (280)
T ss_pred HHHHHHHHHHHHHHH
Confidence 46666677776554
No 30
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.97 E-value=5.5e-29 Score=223.75 Aligned_cols=175 Identities=19% Similarity=0.255 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHH
Q 022643 39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~----~l~l~~~l~~~~~~~~~~~~~ 114 (294)
+.++...+..+.+.|.+|||+|+|+|++|+|+||+++|++|+++++.....+... ++.+++..|+...... +++.
T Consensus 50 ~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~ 128 (292)
T PRK13595 50 PLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYA 128 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 4556677789999999999999999999999999999999999998865544433 4556667776655443 5677
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
++++.|| .||+|+|++|+++++++.. .+. |+. .+..+.|.. ..... .....+|.+++++++++||
T Consensus 129 ~l~~~YS--~pPlRlK~rp~l~~l~~~~-~g~----p~~--~~~~~~g~~----~~~~~--l~a~~~w~~g~dii~ai~D 193 (292)
T PRK13595 129 ALFVGYS--LPPLRFKARPFLDGLSNAA-YAL----PLA--LPALALGAP----VPWPP--LLALMAWSVGKHAFDAAQD 193 (292)
T ss_pred HHHHHHc--cCccchhcCcchhHHHHHH-HHH----HHH--HHHHHcCCc----chHHH--HHHHHHHHHHHHHHHhccC
Confidence 8899999 5999999999999888632 232 221 122334432 22222 2345678899999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA 229 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~ 229 (294)
+|+||+.|+||+|+++|+|++.+++..+..++...
T Consensus 194 iegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~ 228 (292)
T PRK13595 194 IPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL 228 (292)
T ss_pred hHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988766555443
No 31
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=9e-31 Score=226.99 Aligned_cols=229 Identities=17% Similarity=0.105 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643 36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113 (294)
Q Consensus 36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~ 113 (294)
..+-++-.++++||+++|.+||..|+|.|++.+| .||+++|++|++||..+..+...+++.+..++|+.+..+ +..+
T Consensus 103 ~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~l-g~~s 181 (353)
T KOG1381|consen 103 KMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIAL-GASS 181 (353)
T ss_pred HHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHh-cccc
Confidence 3445667899999999999999999999999887 899999999999999999999999999999999877643 3567
Q ss_pred HHHHHHhcCCccccccccCchhhHHHHHH--HhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhh
Q 022643 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVS--LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 191 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~--~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 191 (294)
+.+.+.|+. +||.+++.++..+. .||.+. ++.++.|.. .+....-+++.-..|++.++++|+
T Consensus 182 l~~v~~ypl------~kr~TY~pq~vLgltfnwGAll-------Gw~A~~g~~---~~s~~~plYls~v~Wtl~YDTIYA 245 (353)
T KOG1381|consen 182 LALVITYPL------MKRFTYWPQLVLGLTFNWGALL-------GWCALKGSL---SPSAVLPLYLSGVCWTLIYDTIYA 245 (353)
T ss_pred cccEEEeeh------hhhcchhHHHHHhhhcchhhhh-------cchhhcCcc---ChhhhhHHHHhhhhhhhhhhhhhh
Confidence 777889995 79999888876553 344332 333455532 222334466677889999999999
Q ss_pred cCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHH
Q 022643 192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNAS 271 (294)
Q Consensus 192 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~ 271 (294)
+||.++|.+.|+|+.+.++|+++-.++. .+-......+...|+.+.+.| ++| .+..+.+..+..|..++|.||+++
T Consensus 246 HQDK~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~--pyy-~~lg~~~~~L~~~i~~vdiDnp~d 321 (353)
T KOG1381|consen 246 HQDKRDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW--PYY-AALGAVAARLGSQIYKVDIDNPSD 321 (353)
T ss_pred cccchhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc--hHH-HHHHHHHHHHHhheeeeecCChHH
Confidence 9999999999999999999999555554 444455666788899999988 454 558889999999999999999999
Q ss_pred HHHHHH-HHHHHHHH
Q 022643 272 ILSFYM-FIWKLYYA 285 (294)
Q Consensus 272 ~~~f~~-~~~~l~~~ 285 (294)
|+++|. |+|-+.+.
T Consensus 322 C~k~f~sN~ntGli~ 336 (353)
T KOG1381|consen 322 CWKKFKSNSNTGLIL 336 (353)
T ss_pred HHHHHHhcCcchHHH
Confidence 977775 45554443
No 32
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=2.3e-28 Score=223.02 Aligned_cols=223 Identities=16% Similarity=0.164 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCh--hhhh--hcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHH----hhhHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIW 108 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~--~~D~--~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~----l~~~~~~~ 108 (294)
..+..+++++++|.++|.+|||+|+ |.|+ .++|+||+++|++|++|++..+..+..++++++.. .+++.. .
T Consensus 39 ~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~ 117 (293)
T PRK06080 39 LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLL-L 117 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H
Confidence 4556778999999999999999998 4675 45679999999999999998887777666555543 344333 3
Q ss_pred HHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHH
Q 022643 109 AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF 188 (294)
Q Consensus 109 ~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (294)
..+.+.+.++.|| .||.|+|++++ |++..+..+|.....+.+ +.+.+ ..+...++......+|+...++
T Consensus 118 ~~~~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~-----~~~~~---~~~~~~~~~~l~~~l~~~~~~~ 186 (293)
T PRK06080 118 LGLLCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTY-----YLQAG---TVDSAVFLPALPCGLLIGAVLL 186 (293)
T ss_pred HHHHHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHH-----HHhcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 3356677789999 48888888875 787776666654433322 22333 2355566666777888889999
Q ss_pred HhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCC-C
Q 022643 189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDL-S 267 (294)
Q Consensus 189 i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~-~ 267 (294)
+||++|+|+|++.|+||+|+++|+|+++++...+..++++..+........++ .+.+ ..+......++.+.... +
T Consensus 187 ~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---~~ll-~ll~~p~~~~~~~~~~~~~ 262 (293)
T PRK06080 187 ANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP---WGLL-FLLSLPLAVKAARPVLRKQ 262 (293)
T ss_pred hcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHH-HHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998888887666555544443 2222 23334445555554432 2
Q ss_pred ChHHHHHH
Q 022643 268 DNASILSF 275 (294)
Q Consensus 268 ~~~~~~~f 275 (294)
++++....
T Consensus 263 ~~~~~~~~ 270 (293)
T PRK06080 263 KPETLIPA 270 (293)
T ss_pred CHHHHHHH
Confidence 44444333
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=2.1e-28 Score=221.66 Aligned_cols=169 Identities=26% Similarity=0.344 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG 117 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~ 117 (294)
.+..+++.++.++++|++|||+|+|+|++|+|+||+++|++|+++++.++.++.++++.+++..|+++.... +.+..++
T Consensus 39 ~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~ 117 (277)
T PRK12883 39 LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLM 117 (277)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344567888899999999999999999999999999999999999999999999999988888887766544 4566779
Q ss_pred HHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643 118 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197 (294)
Q Consensus 118 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~ 197 (294)
+.|+. +.||++.++++.++...|..+..|+ .++ +. .+...+.. ...++++..+++.||+||+|+
T Consensus 118 ~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~-----~a~-~~----~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~ 181 (277)
T PRK12883 118 FLYAW-----KLKPLPFIGNVVVALLTGATPIYGA-----IAV-GR----IGLAGYLA-ICAFLVNVAREIMKDIEDIEG 181 (277)
T ss_pred HHHhh-----cccCCcchhhHHHHHHHHHHHHHHH-----HHh-cc----ccHHHHHH-HHHHHHHHHHHHHhhhhhhcc
Confidence 99995 4788888888887766554332222 122 32 23332222 234556677889999999999
Q ss_pred hHhcCCccchhhccHHHHHHHHHHHH
Q 022643 198 DKKFGIKTLSVMLGKERVFRLSVSML 223 (294)
Q Consensus 198 D~~~G~~Tlpv~~G~~~a~~~~~~l~ 223 (294)
|++.|+||+|+++|+|+++++.....
T Consensus 182 D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 182 DKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred HHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 99999999999999999998776543
No 34
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=3.3e-27 Score=216.96 Aligned_cols=213 Identities=15% Similarity=0.070 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcC----CCCcccccccCH
Q 022643 5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLPLASGEISM 80 (294)
Q Consensus 5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~----p~Rpi~sG~is~ 80 (294)
++.++....+|...+. ....++++ ...+.++++++++|.++|.+|||+|.+.|+.++ |+|++++|.+|+
T Consensus 15 l~~s~~pvllG~a~a~----~~~~~~~~---~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~ 87 (317)
T PRK13387 15 KIASFFPVILGTLFSL----YVAKIFDW---LLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKP 87 (317)
T ss_pred HHHHHHHHHHHHHHHH----HhCCCccH---HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCH
Confidence 3444555555553332 12223443 245667888899999999999999988766654 589999999999
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHH
Q 022643 81 GTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 156 (294)
Q Consensus 81 ~~a~~~~~~~~~~~l~----l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~ 156 (294)
|+++..+..+..++.+ +.+..|++ .+...+++.+.++.|| .||+++||++ +|++.++...|.....+.+
T Consensus 88 ~~v~~~~~~~~~ia~~~Gl~L~~~~g~~-~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~--- 160 (317)
T PRK13387 88 RNVLTVILLMYVVAAILGVYLCMNTSWL-LLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAV--- 160 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHH---
Confidence 9999988877777666 44555643 4444567888899999 5899999999 5888877666655444432
Q ss_pred HHHhhcCCccccchHHH--------------------HHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHH
Q 022643 157 QKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVF 216 (294)
Q Consensus 157 ~~~~~g~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~ 216 (294)
+++.+. .++..+ +......+.+...+++||++|+|+|++.|+||+|+++|+|+++
T Consensus 161 --yv~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~ 235 (317)
T PRK13387 161 --YINTNT---ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGV 235 (317)
T ss_pred --HHhcCC---CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHH
Confidence 233221 121111 1344455666677999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 022643 217 RLSVSMLSIAYGAAVVVGAS 236 (294)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~~~ 236 (294)
++...+...+|+..+.....
T Consensus 236 ~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 236 VLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888888865544333
No 35
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=3.6e-27 Score=215.62 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Q 022643 38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWI 114 (294)
Q Consensus 38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~-~l~~~~~~~~~~~~~ 114 (294)
.+.++++..+.++++|++|||+|+|+|++++| +||+|+|++|++||+.++.++..+++.++. ..|+.......+...
T Consensus 49 ~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~ 128 (306)
T PRK13362 49 MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYV 128 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44567888999999999999999999997654 899999999999999999999888887654 457655433323334
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
...+.||. ++||++..+++..++.++..+..| +.++.|. .+...+++....++|+..++...+++|
T Consensus 129 ~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G-----~~a~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~ 194 (306)
T PRK13362 129 VYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVG-----YCAVTGQ----FDAGALILLLMFSLWQMPHSYAIAIFR 194 (306)
T ss_pred HHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHH-----HHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45779984 489999988887665544333333 2233332 355566667778899999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHhh-c--CCCC-h
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP-FLANKLITIIGHGILASIFWLRVRA-V--DLSD-N 269 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~--d~~~-~ 269 (294)
+|||+++|+||+|+++|+|++++.......+... ........+ .++ .|.....+....+++...+ . +.+| +
T Consensus 195 ~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~-~s~l~~~~g~~g~---~y~~~~~~~~~~~l~~a~~~~~~~~~~~~ 270 (306)
T PRK13362 195 FNDYAAAGIPVLPVARGIAKTKLHIVLYILVFAL-VTALLPLAGYTGI---GYLAVAAATSLWWLAMALKGYRHAVDDTV 270 (306)
T ss_pred HhhHHHCCCeeeceecChHHHHHHHHHHHHHHHH-HHHHHHHHccccH---HHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence 9999999999999999999888765543322222 122222221 222 3333333433434433332 2 2233 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022643 270 ASILSFYMFIWKLYYA 285 (294)
Q Consensus 270 ~~~~~f~~~~~~l~~~ 285 (294)
.+.+-|..+++++...
T Consensus 271 ~a~~~f~~S~~yl~~~ 286 (306)
T PRK13362 271 WARQLFGFSILTITAL 286 (306)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566788888887664
No 36
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.96 E-value=1.6e-27 Score=212.47 Aligned_cols=222 Identities=23% Similarity=0.310 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccChhhhhh--cCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643 36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113 (294)
Q Consensus 36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~--n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~ 113 (294)
.......+++++.+.++|.+||+.|+|+|+. |||+||+++|+++++++...+.++.++++.+++..++..+... +..
T Consensus 23 ~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~-~~~ 101 (257)
T PF01040_consen 23 PIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLIL-LLG 101 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHH
Confidence 3444556677799999999999999999999 8999999999999999999999999999988888886655444 455
Q ss_pred HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 193 (294)
.+.++.|| ||+|+||+++.+++..+..++.....+++ ..+++ .+.+.+.......++.......+|++
T Consensus 102 ~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (257)
T PF01040_consen 102 FLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAY------AAGGD---PPPPPFLLAIFFFLLIFAIMFFNDIR 169 (257)
T ss_pred HHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhh------hcCCc---ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66679999 78899999998998887766544433322 12332 23333343344455666667788999
Q ss_pred ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 022643 194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 273 (294)
Q Consensus 194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~ 273 (294)
|+|+|++.|+||+|+++|+|++++... ....+.. ..........+ .........+..+....+..+.+++++++
T Consensus 170 D~~~D~~~g~~Tl~v~~G~~~~~~~~~--~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 243 (257)
T PF01040_consen 170 DIEGDRKAGRRTLPVLLGEKKARYLLL--TAGLLLF-LLLLLGLFSPW---PLIIALLLAALALIFILWFFRKRDPKKPE 243 (257)
T ss_pred hHHHHHHcCCcchHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 999999999999999999999988211 1111111 00111111111 22333344455555555666655555555
Q ss_pred HHH
Q 022643 274 SFY 276 (294)
Q Consensus 274 ~f~ 276 (294)
+++
T Consensus 244 ~~~ 246 (257)
T PF01040_consen 244 RLF 246 (257)
T ss_pred HHH
Confidence 555
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=2.6e-26 Score=207.89 Aligned_cols=196 Identities=18% Similarity=0.176 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhh--hhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHH----Hhhh---
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAV----MIRS--- 103 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~--D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~----~l~~--- 103 (294)
....++++++++++|.++|.+|||+|.+. |+.+ +|.|++++|.+++|+++..+..+..++..++. ..++
T Consensus 27 ~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~ 106 (284)
T TIGR00751 27 WLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLS 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 44456778899999999999999999853 5432 47899999999999999988777766655543 3342
Q ss_pred --HHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHH
Q 022643 104 --PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISC 181 (294)
Q Consensus 104 --~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 181 (294)
+++....+.+.+.++.|| .||+|+|++++ |++.++..+|.+...+.+ +++.+. +++..++......+
T Consensus 107 ~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~-----yvq~~~---~~~~~ll~sl~~g~ 175 (284)
T TIGR00751 107 DLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQ-----YLQAHR---VDWVGILPAVATGL 175 (284)
T ss_pred hhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHH-----HHhcCC---CCHHHHHHHHHHHH
Confidence 134344467778899999 58999999996 788877777766554433 344443 45555555555667
Q ss_pred HHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643 182 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA 241 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 241 (294)
.+.+++++||++|+|+|++.|+||+|+++|+|+++++...+...+|...+........++
T Consensus 176 l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~ 235 (284)
T TIGR00751 176 LACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISW 235 (284)
T ss_pred HHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 777889999999999999999999999999999999999988888876655544333333
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.6e-26 Score=210.48 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHhhcccChhhhhhc---------C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhH---HHH
Q 022643 42 LVPAVLMHIYVVAINQLSDVEVDKVN---------K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFI 107 (294)
Q Consensus 42 ll~~~l~~~a~~~iNd~~D~~~D~~n---------~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~---~~~ 107 (294)
.++..++..++|++|||.|+|.|++| | ++||+++|++|++|++.+..++.++++.++..++.. ..+
T Consensus 47 ~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~ 126 (297)
T PRK12871 47 ALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVF 126 (297)
T ss_pred HHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455778999999999999865 3 489999999999999999999988888887765432 122
Q ss_pred HHHHHHHHHHHHhcCCccccccccC---chhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHH
Q 022643 108 WAVIAWIFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV 184 (294)
Q Consensus 108 ~~~~~~~~l~~~Ys~~~pp~rlKr~---~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (294)
...+.+.++++.|+. .||. |. +.+..+...+..+..+ ....|. .+...++.....++|+.
T Consensus 127 ~l~~~~~~~~~~Y~~------~kr~~~~p~-~~l~G~~~~~~~~~~g------~~~~g~----~~~~~~ll~~~~~~w~~ 189 (297)
T PRK12871 127 VIMLYSYGIEAFYQV------KKRNQKYPV-AQLLGRTDFTLFPAAG------YLCYGQ----PDMTALLYMVFFYPWTM 189 (297)
T ss_pred HHHHHHHHHHHHHhc------ccccccccH-HHHHHHHHHHHHHHHH------HHHhCC----CcHHHHHHHHHHHHHHH
Confidence 222455567788884 2332 42 1222211112111111 122332 34455555567789999
Q ss_pred HHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 022643 185 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV 264 (294)
Q Consensus 185 ~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (294)
+++++||++|+|||++.|+||+|+++|+|++++....+..+... ...+.....++ ..+.....+.+..+.+|.+..
T Consensus 190 ~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~ 265 (297)
T PRK12871 190 AHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFL--AAIFFLRELGP--IALYGFLAGFVLLAGANLYLW 265 (297)
T ss_pred HHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHH--HHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998776654434433 22233344443 333344467778888999999
Q ss_pred CCCChHHHHHHHH
Q 022643 265 DLSDNASILSFYM 277 (294)
Q Consensus 265 d~~~~~~~~~f~~ 277 (294)
+.+|++.|-+-|.
T Consensus 266 ~~~~~~~~~~~f~ 278 (297)
T PRK12871 266 KEKSQDAGMKILP 278 (297)
T ss_pred cCCCHHHHHHHHH
Confidence 9999998866554
No 39
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=4.4e-27 Score=213.77 Aligned_cols=186 Identities=22% Similarity=0.245 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Q 022643 39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVG 117 (294)
Q Consensus 39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~-~l~~~~~~~~~~~~~~l~ 117 (294)
....++.++.+.++|.+||+.|+|+|++|+|+||.++++...+.+.....+...++..+.. ..|++.+.. .+++.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 117 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILG 117 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHH
Confidence 3456788899999999999999999999999999885544444333333333344444332 235544433 35666779
Q ss_pred HHhcCCcccc-ccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643 118 TAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD 196 (294)
Q Consensus 118 ~~Ys~~~pp~-rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e 196 (294)
+.||. ||. |+||.|.++++.++..+|..+..+.+ +..+. .++...+......+++...++.++|++|+|
T Consensus 118 ~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~-----~~~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e 187 (285)
T PRK12872 118 ILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGV-----YYYQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIE 187 (285)
T ss_pred HHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHH-----Hhccc---ccchHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 99995 555 58999999999988877754433221 12222 123334444445566677889999999999
Q ss_pred hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022643 197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 235 (294)
Q Consensus 197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~ 235 (294)
+|+++|+||+|+++|+|++++....+..+++..++....
T Consensus 188 ~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~ 226 (285)
T PRK12872 188 GDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVY 226 (285)
T ss_pred hHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888777766554433
No 40
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=5.1e-26 Score=205.44 Aligned_cols=177 Identities=21% Similarity=0.190 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Q 022643 42 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYS 121 (294)
Q Consensus 42 ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys 121 (294)
.+++.+...++|++|||+|+|+|++|+|+||.+ +++.+..++.+..++|+.+++..|++ . +. +++.+.++.||
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~-l-l~-ll~~l~g~lYS 136 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML-L-LA-FLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH-H-HH-HHHHHHHHHhc
Confidence 345567889999999999999999999999987 78899999999999999999888853 2 23 56777799999
Q ss_pred CC----ccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643 122 VQ----LPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197 (294)
Q Consensus 122 ~~----~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~ 197 (294)
.+ ..|+|+|+.+.+||+.++..+|.....+ .+ .. .+ .. ........+...-..+++.+||++|+||
T Consensus 137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~---~g-~~-~~----~~-~~~~~i~l~~~~~l~~~~iindirDiEG 206 (307)
T PRK13591 137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI---AG-SY-CG----SL-IPVGLIFLFFGVKLFINSCVYDFKDVKG 206 (307)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHHHHHHHHH---HH-hh-hh----hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 64 1245889999999999988777533211 01 00 11 11 1111111111112245678999999999
Q ss_pred hHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022643 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 235 (294)
Q Consensus 198 D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~ 235 (294)
|++.|+||+|+++|+++++++...+..++++.++....
T Consensus 207 Dr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~ 244 (307)
T PRK13591 207 DTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALI 244 (307)
T ss_pred HHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888776554433
No 41
>PLN02776 prenyltransferase
Probab=99.95 E-value=3e-25 Score=203.79 Aligned_cols=232 Identities=15% Similarity=0.009 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAY-AVMIRSPPFIWAVIAW 113 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l-~~~l~~~~~~~~~~~~ 113 (294)
.++..+++.+++++++|++||+.|+|+|++|+| +||+|+|++|+++|+.+++++.++++.+ .+.+|+.+..++....
T Consensus 30 ~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~ 109 (341)
T PLN02776 30 GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNI 109 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455678899999999999999999999999875 9999999999999999999999888854 4567877665543333
Q ss_pred HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 193 (294)
++....||. +||++.+. ..++...|.+.++. ++.++.|. ++...+++...+++|+..+.....++
T Consensus 110 ~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~----Gw~Avtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~ 174 (341)
T PLN02776 110 LLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLM----GWAAASGQ----LDAGAMVLAAALYFWQMPHFMALAYM 174 (341)
T ss_pred HHHHHHHHh------HccCCchh-HHHHHHHHHHHHHH----HHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444678984 79998764 44444434322222 33345453 45666677778899999888888999
Q ss_pred ChHhhHhcCCccchhhc--cHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCh-H
Q 022643 194 DVDGDKKFGIKTLSVML--GKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-A 270 (294)
Q Consensus 194 D~e~D~~~G~~Tlpv~~--G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~ 270 (294)
|+|||++.|++++|+.- |+++++.+....+.+....++..+... .++ .++..+..+.+..+.+.++..+.+|+ .
T Consensus 175 ~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~-~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ 251 (341)
T PLN02776 175 CRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV-TSS--PFALEAALLTAYLAASAASFYREPTNAN 251 (341)
T ss_pred hHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999976 455555544333322222222211111 122 35556666666666677776655444 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022643 271 SILSFYMFIWKLYYAE 286 (294)
Q Consensus 271 ~~~~f~~~~~~l~~~~ 286 (294)
..+.|+.+++++...-
T Consensus 252 ar~~F~~Sl~yL~~l~ 267 (341)
T PLN02776 252 ARKMFHGSLLYLPAFM 267 (341)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677888888886543
No 42
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=1.3e-24 Score=198.13 Aligned_cols=216 Identities=16% Similarity=0.123 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChh--hhhhcCCCCcccccccCHHH
Q 022643 5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGEISMGT 82 (294)
Q Consensus 5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~--~D~~n~p~Rpi~sG~is~~~ 82 (294)
++.++....+|...++ ....+++ ....++++++++++|.++|.+|||+|++ .|+. +++ ...++..++++
T Consensus 24 l~asl~pv~lG~a~a~----~~~~~f~---~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~ 94 (304)
T PRK07419 24 YSVAIMPILVGTAWAL----GETGVFR---LDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSL 94 (304)
T ss_pred HHHHHHHHHHHHHHHH----HcCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHH
Confidence 3444455555553332 1112345 3345667889999999999999999987 6774 332 23455557899
Q ss_pred HHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHH
Q 022643 83 GIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 158 (294)
Q Consensus 83 a~~~~~~~~~~~l~l~----~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~ 158 (294)
.+..+..+..+++.++ +..| |+++...+++.+.++.|| .||+|+|++++ |++.++..+|.++..+.+
T Consensus 95 v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~----- 165 (304)
T PRK07419 95 VFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAAL----- 165 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHH-----
Confidence 9888777766665554 3344 444445567888899999 58999999996 888877777766655443
Q ss_pred HhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022643 159 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP 238 (294)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~ 238 (294)
+++.+ .++...+.......+.+.+.+.+||++|+|+|++.|+||+|+++|+|++++++..+...+|...+.......
T Consensus 166 yv~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~ 242 (304)
T PRK07419 166 YSQTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGF 242 (304)
T ss_pred HHhcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444 345555565566677777889999999999999999999999999999999999988888887665544433
Q ss_pred hhh
Q 022643 239 FLA 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+|
T Consensus 243 ~p~ 245 (304)
T PRK07419 243 WPW 245 (304)
T ss_pred hHH
Confidence 444
No 43
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=5.1e-24 Score=193.05 Aligned_cols=216 Identities=15% Similarity=0.113 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhh--hhhcCCCCcccccccCHHH
Q 022643 5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVNKPYLPLASGEISMGT 82 (294)
Q Consensus 5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~--D~~n~p~Rpi~sG~is~~~ 82 (294)
++.++....+|...++ ...+++++. ..+++++++++.|.++|.+|||+|.+. |+.+. ....++..++++
T Consensus 11 l~~s~~pv~lG~alA~----~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~~~~~~ 81 (285)
T TIGR02235 11 YSVAVMPILVGTAVAW----GQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLTGSRSL 81 (285)
T ss_pred HHHHHHHHHHHHHHHH----HcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcccccCcHHH
Confidence 3444555555553332 122234533 445678899999999999999999874 76432 122233346788
Q ss_pred HHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHH
Q 022643 83 GIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 158 (294)
Q Consensus 83 a~~~~~~~~~~~l~l~----~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~ 158 (294)
.+..+..+..++..++ +..+ |+++.....+.+.++.|| .||+++|++++ |++.++..+|.++..+.+
T Consensus 82 v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~----- 152 (285)
T TIGR02235 82 VFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL----- 152 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH-----
Confidence 8777666665555444 3334 444444567888899999 58999999997 888887777766654433
Q ss_pred HhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022643 159 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP 238 (294)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~ 238 (294)
+++.+ .+++..++......+.+.+..++||+||+|+|++.|+||+|+++|+|+++++...+...+|+..+.......
T Consensus 153 yvqt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~ 229 (285)
T TIGR02235 153 YAQSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGF 229 (285)
T ss_pred HHhCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444 356666666666777788889999999999999999999999999999999999998888887655544433
Q ss_pred hhh
Q 022643 239 FLA 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+|
T Consensus 230 ~p~ 232 (285)
T TIGR02235 230 LPW 232 (285)
T ss_pred hHH
Confidence 334
No 44
>PLN02922 prenyltransferase
Probab=99.94 E-value=2.1e-24 Score=197.92 Aligned_cols=219 Identities=19% Similarity=0.214 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChh--hhhhcCCCCcccccccCHHH
Q 022643 5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGEISMGT 82 (294)
Q Consensus 5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~--~D~~n~p~Rpi~sG~is~~~ 82 (294)
++.++...++|...+. ....+++ +...++++++++++|.++|.+|||+|.+ .|+.++..+.-..| |+++
T Consensus 27 l~~s~~pv~lG~a~A~----~~~g~f~---~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s~~~ 97 (315)
T PLN02922 27 YSVALVPLTVGAAAAY----LQTGLFD---ARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--SRRG 97 (315)
T ss_pred HHHHHHHHHHHHHHHH----HcCCCcc---HHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--CHHH
Confidence 3444555555553332 1112344 3345678899999999999999999976 57644322112233 8999
Q ss_pred HHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHH
Q 022643 83 GIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 158 (294)
Q Consensus 83 a~~~~~~~~~~~l~l~~~l----~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~ 158 (294)
.+..+..+.++++...+.+ +.|.+++.++++.+.++.|| .||+|+|++++ |++.++..+|.++..+.+.
T Consensus 98 v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y~---- 170 (315)
T PLN02922 98 VLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFYL---- 170 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHHH----
Confidence 9888777766665322221 23445555568888899999 58999999997 7777776667665555443
Q ss_pred HhhcC-----Ccc--ccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHH
Q 022643 159 YVLGR-----PLE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 231 (294)
Q Consensus 159 ~~~g~-----~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~ 231 (294)
++.+ ... ..+...++..+...+++.+.+++||++|+|+|++.||||+|+++|+|+++++...+...+|...+
T Consensus 171 -~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i 249 (315)
T PLN02922 171 -ALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLA 249 (315)
T ss_pred -HhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHH
Confidence 2221 000 12344455666677888889999999999999999999999999999999999998888888766
Q ss_pred HHHhhcchh
Q 022643 232 VVGASSPFL 240 (294)
Q Consensus 232 ~~~~~~~~~ 240 (294)
........+
T Consensus 250 ~~v~~~~~p 258 (315)
T PLN02922 250 ALGLLKALP 258 (315)
T ss_pred HHHHHhhhh
Confidence 554443333
No 45
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=1.8e-24 Score=193.82 Aligned_cols=177 Identities=12% Similarity=0.133 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643 37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 116 (294)
Q Consensus 37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l 116 (294)
+.+++.+..++..+++|++|||+|+|+||+|+|+||+|||++|+++++.++..+.++++.++.... .. +...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~-----i~-i~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFM-----NN-VGWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHHH
Confidence 455566677888999999999999999999999999999999999999999888777776654431 11 123334
Q ss_pred HHHh-----cCCccccccccCchhhHHHHHHHhhhHh--HHHHHHHH-HHHhhcCCccccchHHHHHHHHHHHHHHHHHH
Q 022643 117 GTAY-----SVQLPLLRWKGNSFLAAFCMVSLNGLLT--QFPVYVHI-QKYVLGRPLEIFTRPLMFATAFISCFCVVIAF 188 (294)
Q Consensus 117 ~~~Y-----s~~~pp~rlKr~~~~~~~~~~~~~g~l~--~lg~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (294)
.+.| +. ++||.++.||+.++...+... .+.++... +....|.+ ......+++....++-+.++|+
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI 193 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEV 193 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 5566 64 589999999998876655333 12222110 01112221 1111112332334445578999
Q ss_pred HhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHH
Q 022643 189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 228 (294)
Q Consensus 189 i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~ 228 (294)
.+|++| |||++ |.+|+|+++|.|++.++...+..+...
T Consensus 194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~ 231 (299)
T PRK13592 194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL 231 (299)
T ss_pred HHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence 999999 88886 499999999999999988776544443
No 46
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=6.5e-24 Score=191.45 Aligned_cols=178 Identities=22% Similarity=0.221 Sum_probs=123.4
Q ss_pred HHHHHHHHH----HHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHH
Q 022643 44 PAVLMHIYV----VAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMS-----LAYAVMIRSPPFIWAVIAWI 114 (294)
Q Consensus 44 ~~~l~~~a~----~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~-----l~l~~~l~~~~~~~~~~~~~ 114 (294)
.+++++... |.+|||+|+|.|+.|+|++.. .|.++++|++........++ +.+....++ .......+++
T Consensus 38 ~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~l~~~ai 115 (282)
T PRK13105 38 GTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSW-ASGLVLAVSV 115 (282)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 333444444 455999999999999875443 58899999855443333332 222232243 3333446788
Q ss_pred HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD 194 (294)
Q Consensus 115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D 194 (294)
+.++.|| .||.|+|++++.++++..+........ +...+ ++. .+...++....+.+|+.+++.+||+||
T Consensus 116 ~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~-----G~~~~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irD 184 (282)
T PRK13105 116 FAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALY-----GLVLA-GAP---FTAALWAVLAAFFLWGMASHAFGAVQD 184 (282)
T ss_pred HHHHHhc--CCCccccccchHHHHHHHHHHHHHHHH-----HHHHh-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8899999 489999999998886544322111222 22223 332 344455566677889999999999999
Q ss_pred hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 022643 195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 234 (294)
Q Consensus 195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~ 234 (294)
+|+||+.|+||+|+++|+|+++++...++.+++...+..+
T Consensus 185 ie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 185 VVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred hHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887666443
No 47
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.92 E-value=5.1e-23 Score=184.29 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChh--hhhh----cCCCCcccccccCHHHHHHHHHHHHHHHHHHH----HHhhhH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKPYLPLASGEISMGTGIAITLASALMSLAYA----VMIRSP 104 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~--~D~~----n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~----~~l~~~ 104 (294)
++..+++++++++++..+|..|||.|.+ .|.+ .+.++.+.+.+++++..+...+.+...+.+++ ...+++
T Consensus 43 ~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~ 122 (303)
T COG1575 43 LLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWL 122 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6677889999999999999999999976 5643 22355566667777777766655554444443 333443
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHH
Q 022643 105 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV 184 (294)
Q Consensus 105 ~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (294)
++..+.++.+.++.|+. +|+++++.|+ |++..+..+|.+...+.+ +++.+ .+++..++..+...+.+.
T Consensus 123 -~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG~l~v~g~~-----yiqt~---~~~~~~ll~slp~gil~~ 190 (303)
T COG1575 123 -VLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFGPLIVLGAY-----YIQTG---RLSWAILLPSLPVGILIA 190 (303)
T ss_pred -HHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHHHHHHHHHH-----HHhcc---cchHHHHHHHHHHHHHHH
Confidence 45555788889999995 7889999887 777777666755543332 44544 356666666666666677
Q ss_pred HHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643 185 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA 241 (294)
Q Consensus 185 ~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 241 (294)
..+..||+||+|+|+|.||+|+|+++|+|+++++...++..+|+..++........+
T Consensus 191 ~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~ 247 (303)
T COG1575 191 NILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPV 247 (303)
T ss_pred HHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 789999999999999999999999999999999999998888886555434434333
No 48
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=2.7e-22 Score=181.32 Aligned_cols=169 Identities=19% Similarity=0.300 Sum_probs=107.1
Q ss_pred HHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHH---H-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 022643 48 MHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIA---I-TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQ 123 (294)
Q Consensus 48 ~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~---~-~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~ 123 (294)
.+.+.|.+||++|+|+||.|+|+|. |+...++... . ......+++.+....++.... ..+...++++.||
T Consensus 57 ~Nl~~y~iND~~D~D~Dr~~prk~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~-~ll~~i~~~~~YS-- 130 (282)
T PRK12875 57 ANVFLYGVNDVFDADTDELNPKKDR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWP-ALLAFLVLSVEYS-- 130 (282)
T ss_pred HHHHHhcchhhhhhhccccCCCccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHc--
Confidence 4455577999999999999987654 2222222221 1 122233334343343432222 2345678899999
Q ss_pred ccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCC
Q 022643 124 LPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 203 (294)
Q Consensus 124 ~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~ 203 (294)
.||+|+|++|+.+..+.+.. . ++.. +....+.+. .+... +.....+|+.+.+++||+||+|+|++.|+
T Consensus 131 ~pP~rlk~~p~~~~~~~g~~--~---~~~~--~~y~~~tg~---~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi 198 (282)
T PRK12875 131 APPLRFKTTPVLDSLSNGLY--I---LPGV--AAYALVSGS---LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGI 198 (282)
T ss_pred CCCccchhccHHHHHHHHHH--H---HHHH--HHHHHHcCC---CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCC
Confidence 58999999998665432211 1 2211 111223332 33333 22334688999999999999999999999
Q ss_pred ccchhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 022643 204 KTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 234 (294)
Q Consensus 204 ~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~ 234 (294)
||+|+++|+|++++++..+..++.......+
T Consensus 199 ~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 199 RTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred ccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888887766666555544
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.4e-23 Score=182.82 Aligned_cols=233 Identities=15% Similarity=0.077 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVI 111 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~~~~~ 111 (294)
...++.++++..+..+++|++|+++|+|+|++++| +||+++|+++|+|++.++.++.++|+.+. +..|+..-.+...
T Consensus 51 ~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~ 130 (304)
T COG0109 51 PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLF 130 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999887 99999999999999999999999998887 5677666555555
Q ss_pred HHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhh
Q 022643 112 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 191 (294)
Q Consensus 112 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 191 (294)
..++..++||.. +||++....+.++..+...+.+| +.++.|. .+...+++...+++|+...--.-+
T Consensus 131 gi~~Yv~vYT~~-----lKR~T~~NiviGg~aGa~PpliG-----waAvtg~----~~~~a~~Lf~IiF~WtPpHfwALA 196 (304)
T COG0109 131 GIFFYVVVYTLW-----LKRRTPQNIVIGGFAGAMPPLIG-----WAAVTGS----ISLGAILLFAIIFLWTPPHFWALA 196 (304)
T ss_pred HHHHHhhhhhhh-----ccCCcccceeeeeccccccccce-----eeeeeCC----CCchHHHHHHHHHHhccHHHHHHH
Confidence 667778999973 79998754433333333333333 3345564 355555565667788865544556
Q ss_pred cCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc-CC-CCh
Q 022643 192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV-DL-SDN 269 (294)
Q Consensus 192 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-d~-~~~ 269 (294)
++-.||.+++|+..+|++-|++.+++.......+.....+........++ .|.+...+....++++..+. .. +.+
T Consensus 197 l~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~---~Y~v~a~~l~~~~l~~a~~~~~~~~~~ 273 (304)
T COG0109 197 LKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGY---LYLVVATLLGAWFLALAWKLYRKDDRK 273 (304)
T ss_pred HHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 67778889999999999999999998876654443333232222111222 44444455555555555443 22 335
Q ss_pred HHHHHHHHHHHHHHH
Q 022643 270 ASILSFYMFIWKLYY 284 (294)
Q Consensus 270 ~~~~~f~~~~~~l~~ 284 (294)
++.+-|..++-++..
T Consensus 274 ~A~klF~~S~~yL~~ 288 (304)
T COG0109 274 WARKLFKYSIIYLAL 288 (304)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777666654
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.76 E-value=1.8e-16 Score=144.01 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 112 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~ 112 (294)
+...+.++++..++++++|++||+.|+|+||+| ||+||+++|++|+++++.++.++..+++.+++.+|+..... ...
T Consensus 45 ~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~ 123 (295)
T PRK12324 45 LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLV 123 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 334555666777889999999999999999997 67999999999999999999999999999888888755543 356
Q ss_pred HHHHHHHhcCCccccccccCchhhHHHHHHHh
Q 022643 113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 144 (294)
Q Consensus 113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~ 144 (294)
.+++.+.||. ++||++..++++++...
T Consensus 124 ~~~~~~~Ys~-----~lK~~~~~d~l~va~~~ 150 (295)
T PRK12324 124 YLVLNLAYSF-----KLKHQPVLDVFCIASGF 150 (295)
T ss_pred HHHHHHHhhH-----HhcCCchhhHHHHHHHH
Confidence 6777899995 58999998888776543
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.71 E-value=7.8e-16 Score=148.75 Aligned_cols=151 Identities=21% Similarity=0.304 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 112 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~ 112 (294)
+...+.++++..++++++|++||+.|+|+||+| ||+||++||++|+++|+.++.++.++|+.+++.+|+... ...+.
T Consensus 225 ~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~ 303 (479)
T PRK08238 225 LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLA 303 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHH
Confidence 445666777888999999999999999999998 579999999999999999999999999999988887433 34456
Q ss_pred HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643 113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192 (294)
Q Consensus 113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 192 (294)
.+++..+||. ++||++++++++.++..+ ++... ++. ..+. +.+.+++.+ ..+........|..
T Consensus 304 ~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~----lr~~~-G~~-a~~~-----~~s~wll~~-~~~~~l~la~~KR~ 366 (479)
T PRK08238 304 YLALTLAYSL-----RLKRKVLVDVLTLAALYT----LRIIA-GAA-AIGV-----ALSFWLLAF-SMFFFLSLALVKRY 366 (479)
T ss_pred HHHHHHHhhH-----HhcCCccccchHHHHHHH----HHHHH-HHH-Hhcc-----CHHHHHHHH-HHHHHHHHHHHHhH
Confidence 7777889995 589999999888765433 22221 222 2221 233333322 22223345678999
Q ss_pred CChHhhHhcCC
Q 022643 193 HDVDGDKKFGI 203 (294)
Q Consensus 193 ~D~e~D~~~G~ 203 (294)
.|.+++++.|.
T Consensus 367 ~El~~~~~~~~ 377 (479)
T PRK08238 367 TELRRALQRGK 377 (479)
T ss_pred HHHHHHHhcCC
Confidence 99998888885
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.25 E-value=1.3e-11 Score=110.45 Aligned_cols=224 Identities=16% Similarity=0.138 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Q 022643 35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVI 111 (294)
Q Consensus 35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~-l~~~~~~~~~~ 111 (294)
+..++...+|..+..++.|.+||+++.+.|++++| .||+++|++||.+|..++.+....|.-+.+. .|+....+...
T Consensus 126 ~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~ 205 (409)
T KOG1380|consen 126 FPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAG 205 (409)
T ss_pred cchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhc
Confidence 44555677899999999999999999999999887 9999999999999999988888777766544 66544333322
Q ss_pred HHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHH--HHHH
Q 022643 112 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFI 189 (294)
Q Consensus 112 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~i 189 (294)
-.++...+|+ ++||......-.++. .|.+.++ +++.+..|. .+...+++......|.+- ....
T Consensus 206 Ni~LY~~vYT------PlKrihiinTWvGav-VGAIPPL----MGwAAasg~----l~~ga~iLa~~LyaWQfPHFnaLS 270 (409)
T KOG1380|consen 206 NIFLYAGVYT------PLKRIHIINTWVGAV-VGAIPPL----MGWAAASGL----LDPGAMILAGILYAWQFPHFNALS 270 (409)
T ss_pred chheeecccc------chhhhhhhhhHHHHH-hccCCcc----chhhhhccC----CCccHHHHHHHHHHhcccchhhhh
Confidence 3345567787 378865422222222 2333332 233333443 234455555566778753 2334
Q ss_pred hhcCChHhhHhcCCccchhhc---cHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc--
Q 022643 190 KDLHDVDGDKKFGIKTLSVML---GKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV-- 264 (294)
Q Consensus 190 ~d~~D~e~D~~~G~~Tlpv~~---G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 264 (294)
.+++ +|..+.|.|.+++.= -++.+.+....++.+.|.. -.+++. .| +|.+-...+-..+.+...+.
T Consensus 271 ~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~-~~~~lT---~~---wf~i~s~~~na~l~~~afkFY~ 341 (409)
T KOG1380|consen 271 WNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAA-PSTDLT---TW---WFAIESLPLNAYLAYLAFKFYR 341 (409)
T ss_pred hhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhccc-cccCcc---cc---eeeeccccHhHHHHHHHHHHhh
Confidence 4443 467899999998863 3444455554443333221 111111 12 22222222223333333332
Q ss_pred CCCChHHHHHHHHHHHHH
Q 022643 265 DLSDNASILSFYMFIWKL 282 (294)
Q Consensus 265 d~~~~~~~~~f~~~~~~l 282 (294)
|.+..++.+-||.+++-|
T Consensus 342 ~~d~~~aRklF~aSLlhL 359 (409)
T KOG1380|consen 342 DRDYHNARKLFFASLLHL 359 (409)
T ss_pred ccchhhHHHHHHHHHHHH
Confidence 445566788888875543
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=98.93 E-value=7e-10 Score=95.20 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhhcccCh--hhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHH---HHhhhHH---HHHHHHH
Q 022643 41 ALVPAVLMHIYVVAINQLSDV--EVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPP---FIWAVIA 112 (294)
Q Consensus 41 ~ll~~~l~~~a~~~iNd~~D~--~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~---~~l~~~~---~~~~~~~ 112 (294)
+..+.+-.+.++|.+|.|+|. .+|++...+|.++...+++.+...++..+...+.... ..+++.. +.+..+.
T Consensus 104 ~a~avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfg 183 (359)
T KOG4581|consen 104 CAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFG 183 (359)
T ss_pred HHhhheeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhcc
Confidence 444556789999999999995 4788777799999988999888888877776554332 3344321 1112234
Q ss_pred HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643 113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192 (294)
Q Consensus 113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 192 (294)
++--.++|+.+ +.+|.... |.+++.+..|.+..+-.| +.+.+. ..+..+--.....+-+-++.+.||.
T Consensus 184 gls~sflytgg---igfkyial-gdliili~fgpiavlfaf-----~~q~g~---l~~~~l~yaiplalnteailhsnnt 251 (359)
T KOG4581|consen 184 GLSGSFLYTGG---IGFKYIAL-GDLIILILFGPIAVLFAF-----AIQTGH---LAIFPLGYAIPLALNTEAILHSNNT 251 (359)
T ss_pred CcccceeEecc---cceEEEec-cCEEEEEeechHHHHHHH-----HHhcCc---eeEEeehheeeeccchHHHhccCCC
Confidence 44456788864 24565443 443333333322221111 122221 1111111112223334456789999
Q ss_pred CChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA 241 (294)
Q Consensus 193 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 241 (294)
+|.|.||++|+-|+++.+|+..+-.++..++.+.|....+.+..+...+
T Consensus 252 rd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~ 300 (359)
T KOG4581|consen 252 RDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISF 300 (359)
T ss_pred cccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888788887777776665543
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=94.41 E-value=0.23 Score=45.43 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHH
Q 022643 41 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 86 (294)
Q Consensus 41 ~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~ 86 (294)
.-+.+....+..+..|+..|.|+|+.|+|+.+.. |+..+.++.+
T Consensus 181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 3445566777888899999999999998754433 4444555444
No 55
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=93.57 E-value=1.3 Score=41.06 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH
Q 022643 41 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 91 (294)
Q Consensus 41 ~ll~~~l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~ 91 (294)
..+...+........||+.|+|+||.+.+ +-|. ++.++.+......+.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~ 242 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF 242 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence 34445566667788999999999999865 3333 455566655443333
No 56
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.13 E-value=0.65 Score=42.71 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=36.7
Q ss_pred HhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH---HHHHHHHHHhh-----hHHHHHHHHHHHHHHHHhcC
Q 022643 54 AINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA---LMSLAYAVMIR-----SPPFIWAVIAWIFVGTAYSV 122 (294)
Q Consensus 54 ~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~---~~~l~l~~~l~-----~~~~~~~~~~~~~l~~~Ys~ 122 (294)
.+||+.|.|.|+.+.+ .-|+.=| ++.+..+..... .+..+.+..++ +...+.+.+.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 5899999999998764 5565444 333433322222 11122222222 22233345677778889996
No 57
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=91.45 E-value=1.7 Score=39.35 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 77 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~ 77 (294)
..++....-..+||..|+|.||+++ +.-|..-|+
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 3344455666789999999999865 455655554
No 58
>PLN02922 prenyltransferase
Probab=91.16 E-value=1.6 Score=40.46 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHH
Q 022643 43 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT 87 (294)
Q Consensus 43 l~~~l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~ 87 (294)
+...+........||+.|+|+||++++ +-|. ++.++.+..+.
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~ 237 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVV 237 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHH
Confidence 344466677888999999999999876 3333 44555555543
No 59
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=90.91 E-value=1.7 Score=40.02 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT 87 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~ 87 (294)
+........||+-|+|+||.+.+ +-|. ++.++.+....
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly 223 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLL 223 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHH
Confidence 45567777999999999999865 3333 44455555543
No 60
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=90.79 E-value=2.3 Score=38.73 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhh
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 102 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~ 102 (294)
+..+...+...+||+.|.|.||++.. |.+|. ++.+|.+..+...+.+++.++....+
T Consensus 168 ~~~~~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 168 AFFLWGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778999999999998653 22332 56677777776666666554444333
No 61
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=90.43 E-value=4.2 Score=36.96 Aligned_cols=33 Identities=21% Similarity=0.052 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcCChHhhHhcCC-ccchhhccHH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 213 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G~~ 213 (294)
+...+...+||+.|+|-|++.-+ |.=|.-=|+-
T Consensus 58 ~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v 91 (289)
T COG0382 58 LARSAGYVINDLADREIDRINPRTKNRPLPSGRV 91 (289)
T ss_pred HHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence 33445678999999999998877 4455555543
No 62
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=89.36 E-value=2.6 Score=38.00 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhcCChHhhHhcCCccchhhccH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 212 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~ 212 (294)
+...+-..+||+.|.|.|++. ++.=|..-|+
T Consensus 48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 334456789999999999988 6777777774
No 63
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=88.67 E-value=3.3 Score=37.74 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 91 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~ 91 (294)
+...+....||.-|+|+|+.+.+ +-|. ++.++.+......+.
T Consensus 172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~ 214 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI 214 (285)
T ss_pred HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence 56667778999999999999865 3333 455666655443333
No 64
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=88.41 E-value=12 Score=34.04 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHHHHHHHHHHHHH
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASALMSLAY 97 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~~~~~~~~~l~l 97 (294)
+..+...+...+||+.|+|.|++.+ +.-|. ++.++.+..+...+..++..+
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~ 224 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAA 224 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHH
Confidence 3456666778899999999999754 34443 445566665555554444433
No 65
>PLN00012 chlorophyll synthetase; Provisional
Probab=88.08 E-value=4.7 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643 46 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 77 (294)
Q Consensus 46 ~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~ 77 (294)
++...+....||+.|+|.|++. +|.-|+.-|+
T Consensus 262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 3456667779999999999975 4566765554
No 66
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=87.87 E-value=9.5 Score=33.33 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcCChHhhHhc-CCccchhhccHHH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKF-GIKTLSVMLGKER 214 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~-G~~Tlpv~~G~~~ 214 (294)
+........||+.|.|.|+.. +++.-|..-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 334456788999999999995 3445555555443
No 67
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=87.71 E-value=4.8 Score=36.56 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH
Q 022643 45 AVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 91 (294)
Q Consensus 45 ~~l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~ 91 (294)
..+........||+.|+|.||.+.+ .-|. ++.++.+......+.
T Consensus 177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~ 221 (293)
T PRK06080 177 CGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALL 221 (293)
T ss_pred HHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHH
Confidence 3345566678999999999998754 3333 344555544443333
No 68
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=87.01 E-value=5 Score=36.38 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643 42 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 77 (294)
Q Consensus 42 ll~~~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~ 77 (294)
.++.++.+..-..+|++.|+|.|++. .|.-|..-|+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 34556667777789999999999975 4577776664
No 69
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=86.92 E-value=5.2 Score=36.16 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAI 86 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~ 86 (294)
+...+....||+.|+|.||+++ +.-|..-| +|.+..+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l 209 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIV 209 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHH
Confidence 3445557899999999999864 35555444 4444444
No 70
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=86.90 E-value=4.8 Score=37.17 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643 47 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 77 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~ 77 (294)
+...+....||+.|+|.||.+ +|.-|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 345556789999999999986 4566665554
No 71
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=86.66 E-value=4.1 Score=37.96 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcC-CCCccccc
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 76 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG 76 (294)
..++...+-..+||..|+|.|+... +.-|+.=|
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 3445566667799999999999864 35555444
No 72
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=86.33 E-value=6.1 Score=36.30 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAIT 87 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~~ 87 (294)
+...+....||+.|+|.|+++. |.-|..-| ++.+....
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~ 232 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWIC 232 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHH
Confidence 4555666799999999999865 35554444 44444443
No 73
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=85.91 E-value=11 Score=34.50 Aligned_cols=31 Identities=32% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCChHhhHhcCC-ccchhhccHH
Q 022643 183 CVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 213 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G~~ 213 (294)
..+-..+||+.|+|-|++..| |.=|..-|+-
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i 89 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGAL 89 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence 345678999999999998766 5677777743
No 74
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=85.61 E-value=6.3 Score=35.71 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643 42 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 77 (294)
Q Consensus 42 ll~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~ 77 (294)
.+..++.+..-...|+..|+|.|+++. |.-|..-|+
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 334556666667889999999999865 466665554
No 75
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=84.95 E-value=5.1 Score=36.71 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCChHhhHhcC-Cccchhh---ccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVDGDKKFG-IKTLSVM---LGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~~~G-~~Tlpv~---~G~~~a~~~~~~l 222 (294)
..+...+||+.|.|.|++.- +|.=|.. +..+.+.....++
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l 102 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL 102 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence 34567899999999999852 2222333 3444444444333
No 76
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=84.51 E-value=6.8 Score=35.65 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLA 89 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~ 89 (294)
+........||..|+|+|+.+.+ +-|. ++.++.+..+...
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~ 215 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQG 215 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHH
Confidence 44466667999999999998765 3332 4555666554433
No 77
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=83.64 E-value=6.1 Score=35.76 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcC-CCCccccc
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 76 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG 76 (294)
..++.+..-..+||..|+|.|++.. |.-|+.-|
T Consensus 166 ~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 166 GVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 4455556667799999999998754 56676666
No 78
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=83.63 E-value=6.4 Score=36.15 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhcccChhhhhhcC-CCCccccc
Q 022643 42 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 76 (294)
Q Consensus 42 ll~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG 76 (294)
.++.++.+.+-..+|+..|+|.|++.+ +.-|+.=|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 345566667777899999999998654 56666555
No 79
>PRK13592 ubiA prenyltransferase; Provisional
Probab=82.19 E-value=15 Score=33.69 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcCChHhhHhcCCccchhhcc---HHHHHHHHHHH
Q 022643 180 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSM 222 (294)
Q Consensus 180 ~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G---~~~a~~~~~~l 222 (294)
++.+.+-..+||+.|+|-|+. ++..=|+-=| +|.++.....+
T Consensus 56 f~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 56 FGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence 334455678999999999955 4555565444 45555554444
No 80
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=81.86 E-value=10 Score=34.26 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCChHhhHhcCCccchhhcc---HHHHHHHHHHHH
Q 022643 180 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSML 223 (294)
Q Consensus 180 ~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G---~~~a~~~~~~l~ 223 (294)
.+...+-..+||+.|+|.|++.. +.=|..=| +|.+......+.
T Consensus 47 ~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~ 92 (279)
T PRK09573 47 FLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLF 92 (279)
T ss_pred HHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHH
Confidence 33445567899999999999753 44454444 455554444433
No 81
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=81.65 E-value=12 Score=34.30 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643 43 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 77 (294)
Q Consensus 43 l~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~ 77 (294)
+..++.+..-...||+.|+|.|++++ |.-|+.-|+
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 34556667777899999999999864 567776665
No 82
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=81.01 E-value=25 Score=32.39 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.5
Q ss_pred HHhhcCChHhhHhcCCccchhhccH
Q 022643 188 FIKDLHDVDGDKKFGIKTLSVMLGK 212 (294)
Q Consensus 188 ~i~d~~D~e~D~~~G~~Tlpv~~G~ 212 (294)
.+||+.|+|-|+. ++++-|+.=|+
T Consensus 71 ~iNd~~D~~iD~i-nkp~rPiasG~ 94 (308)
T PRK12887 71 GLNQLTDIEIDRI-NKPHLPLAAGE 94 (308)
T ss_pred HHhhhhhHHHHhc-CCCCCCcCCcc
Confidence 3999999999985 45777765554
No 83
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=80.33 E-value=17 Score=32.87 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643 43 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 77 (294)
Q Consensus 43 l~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~ 77 (294)
+..++-+..-...|++.|+|.|++.+ |.-|+.-|+
T Consensus 169 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 169 LANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 34455666666789999999999764 566666554
No 84
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=80.02 E-value=20 Score=32.64 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=20.5
Q ss_pred HHHHHHHhhcCChHhhHhcCCc-cchhhccH
Q 022643 183 CVVIAFIKDLHDVDGDKKFGIK-TLSVMLGK 212 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~~~G~~-Tlpv~~G~ 212 (294)
..+-..+||+.|.|-|++..|. .=|..=|+
T Consensus 59 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 59 SAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred HHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 3456789999999999865542 34544444
No 85
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=79.31 E-value=11 Score=33.84 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCChHhhHhcCCccchhhcc---HHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSM 222 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G---~~~a~~~~~~l 222 (294)
...+-..+||+.|.|-|++.. +.=|..-| +|.+......+
T Consensus 50 ~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l 92 (276)
T PRK12882 50 ATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILL 92 (276)
T ss_pred HHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHH
Confidence 334567899999999999643 55566665 44444444333
No 86
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=78.85 E-value=19 Score=32.69 Aligned_cols=34 Identities=24% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 77 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~ 77 (294)
...+.+..-..+|++.|+|.|++.. |.-|+.-|+
T Consensus 167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 4445566677899999999999754 566655554
No 87
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=78.53 E-value=23 Score=32.06 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCChHhhHhcCC-ccchhh---ccHHHHHHHHHH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVM---LGKERVFRLSVS 221 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~G~-~Tlpv~---~G~~~a~~~~~~ 221 (294)
+...+-..+||+.|+|-|++..| +.=|.. +.++.+......
T Consensus 47 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~ 91 (279)
T PRK12869 47 LASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSA 91 (279)
T ss_pred HHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHH
Confidence 33455688999999999998654 233333 344555444433
No 88
>PRK13595 ubiA prenyltransferase; Provisional
Probab=77.26 E-value=41 Score=30.77 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=16.3
Q ss_pred HHHHHHhhcCChHhhHhcCCc
Q 022643 184 VVIAFIKDLHDVDGDKKFGIK 204 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~ 204 (294)
.....+||+-|.|.|+++-+|
T Consensus 61 ~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 61 LLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHhhhhhhhhccCCCC
Confidence 345679999999999866544
No 89
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=75.73 E-value=17 Score=32.77 Aligned_cols=37 Identities=19% Similarity=0.071 Sum_probs=24.8
Q ss_pred HHHHHHhhcCChHhhHhcCCccchhhcc---HHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVS 221 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~Tlpv~~G---~~~a~~~~~~ 221 (294)
.+-..+||+.|+|.|+.. +++=|..-| ++.++.....
T Consensus 51 ~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~is~~~a~~~~~~ 90 (277)
T PRK12883 51 SGGNTINDYFDYEIDKIN-RPNRPLPRGAMSRKAALYYSLL 90 (277)
T ss_pred HHHhHHHhhhhHhccccC-CCCCCCCCCccCHHHHHHHHHH
Confidence 456789999999999964 466666655 4444444433
No 90
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=75.61 E-value=17 Score=33.30 Aligned_cols=30 Identities=27% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCChHhhHhcCC-ccchhhccH
Q 022643 183 CVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 212 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G~ 212 (294)
..+-..+||+.|+|-|++..| |.=|..-|+
T Consensus 57 ~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 57 SGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 345678999999999998776 466655554
No 91
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=74.15 E-value=30 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643 45 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 77 (294)
Q Consensus 45 ~~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~ 77 (294)
.++-+..-..+|++.|+|.|++. .|.-|+.-|+
T Consensus 171 ~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 171 VLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 34445555567888999999864 4677776665
No 92
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=73.99 E-value=28 Score=31.72 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGI 84 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~ 84 (294)
+........||..|+|.||.+.++ -++. ++.++.+.
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~-Tlav-~lG~~~a~ 217 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIP-TLAV-IFGRRGAA 217 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCe-eeee-eEcHhhHH
Confidence 344566779999999999987652 2222 55566653
No 93
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=73.73 E-value=70 Score=29.15 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643 43 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 77 (294)
Q Consensus 43 l~~~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~ 77 (294)
+..++-+.+-..+|++.|+|.|++. .|.-|+.-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 3445666677789999999999865 4666766654
No 94
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=69.36 E-value=5.3 Score=28.09 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=41.3
Q ss_pred CccchhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcC
Q 022643 1 MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 68 (294)
Q Consensus 1 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~ 68 (294)
|....|-+.++|+.|-...++ ..-++.++|.... .+.+++.+++...++..|=|+.+++||.+.
T Consensus 1 mdki~tg~aYgtSag~~~~wl--~~lld~~sp~qW~--aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 1 MDKITTGAAYGTSAGSAGYWL--LQLLDQFSPSQWA--AIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred CchhhhhhccccchhhHHHHH--HHHHhccCcccch--hHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 344455566677666655542 2234445544432 235667788888999999999999998653
No 95
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=68.96 E-value=96 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643 47 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 77 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~ 77 (294)
+...+-.++.+..|+|.||++. +.-|..-|+
T Consensus 183 ~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 183 MIIAANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 3333444577789999999765 455554443
No 96
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=68.87 E-value=30 Score=31.15 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCChHhhHhcCC-ccchhhcc---HHHHHHHHHHH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLSVSM 222 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G---~~~a~~~~~~l 222 (294)
+...+-..+||+.|.|-|++..| +.=|..=| .|.+......+
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~ 91 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLL 91 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 33445678999999999997543 33344334 45555544433
No 97
>PRK08238 hypothetical protein; Validated
Probab=67.73 E-value=26 Score=34.45 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCChHhhHhcCC-ccchhhc---cHHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVDGDKKFGI-KTLSVML---GKERVFRLSVSML 223 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~---G~~~a~~~~~~l~ 223 (294)
..+...+||+-|+|.||+.-+ |.=|..= ..+.+.....++.
T Consensus 239 ~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~ 283 (479)
T PRK08238 239 ASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLL 283 (479)
T ss_pred HHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 345678999999999999632 3334433 4444544444433
No 98
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=67.64 E-value=79 Score=28.78 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCChHhhHhcCC-ccchh---hccHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLSVS 221 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~~~G~-~Tlpv---~~G~~~a~~~~~~ 221 (294)
..+-..+||+.|.|-|++..| +.=|+ ++.+|.+......
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~ 99 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLV 99 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence 345678999999999998543 23333 3344555444433
No 99
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=67.59 E-value=39 Score=30.76 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=24.1
Q ss_pred HHHHHHhhcCChHhhHhcCC----ccchhhccHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGI----KTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~----~Tlpv~~G~~~a~~~~~~l 222 (294)
.+-..+||+-|+|-|++.-| .--.=++..+.+......+
T Consensus 51 sag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~ 93 (286)
T PRK12895 51 TSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF 93 (286)
T ss_pred HHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 45578999999999988733 2222344455555444443
No 100
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=66.68 E-value=51 Score=30.43 Aligned_cols=34 Identities=18% Similarity=0.025 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 77 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~ 77 (294)
+.++.+..-..++++.|+|.|++. .|.-|..-|+
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 444555566667899999999975 4566666555
No 101
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=65.08 E-value=34 Score=31.48 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcCChHhhHhcCC-ccchhhcc---HHHHHHHHH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLSV 220 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G---~~~a~~~~~ 220 (294)
+...+-..+||+.|.|-|++..+ |.=|..=| ++.+.....
T Consensus 58 l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~ 101 (306)
T PRK13362 58 LVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGL 101 (306)
T ss_pred HHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 33445678999999999987654 23344445 444444443
No 102
>PLN02776 prenyltransferase
Probab=57.69 E-value=76 Score=29.76 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCChHhhHhcCC-ccchhhcc---HHHHHHHHH
Q 022643 181 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLSV 220 (294)
Q Consensus 181 ~~~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G---~~~a~~~~~ 220 (294)
+-..+-..+||+.|.|-|++..| |.=|..-| .+.+.....
T Consensus 40 l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~ 83 (341)
T PLN02776 40 LCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAV 83 (341)
T ss_pred HHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 33345678999999999988654 33344444 444444433
No 103
>PLN02878 homogentisate phytyltransferase
Probab=54.52 E-value=1e+02 Score=28.04 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHHHHH
Q 022643 47 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLA 89 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~~~~ 89 (294)
+....-..+||+-|.|-||+.. +.-|+ ++.++.+.+....
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv---~lG~~~~~~i~~~ 207 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSV---RLGQKRVFWLCVN 207 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceech---hhChHHHHHHHHH
Confidence 4444556899999999999865 35554 3444555554433
No 104
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=54.48 E-value=11 Score=32.75 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCChHhhH----------hcCCccchhhccHHHHHH
Q 022643 183 CVVIAFIKDLHDVDGDK----------KFGIKTLSVMLGKERVFR 217 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~D~----------~~G~~Tlpv~~G~~~a~~ 217 (294)
..+..+.+|++|..+|. +.|+.|+|.....+....
T Consensus 159 G~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~ 203 (236)
T cd00867 159 GLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAE 203 (236)
T ss_pred HHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHH
Confidence 44668899999998887 899999999998544433
No 105
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=49.86 E-value=2.4e+02 Score=26.98 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=10.7
Q ss_pred HHHHHHHHhhcccChhh
Q 022643 47 LMHIYVVAINQLSDVEV 63 (294)
Q Consensus 47 l~~~a~~~iNd~~D~~~ 63 (294)
+++..-.++|++++.++
T Consensus 116 ~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 116 LLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 44555557888877643
No 106
>PRK11383 hypothetical protein; Provisional
Probab=47.08 E-value=1.6e+02 Score=24.01 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.7
Q ss_pred HHHHHhhcCChHhhH
Q 022643 185 VIAFIKDLHDVDGDK 199 (294)
Q Consensus 185 ~~~~i~d~~D~e~D~ 199 (294)
++...|+.||...++
T Consensus 118 ai~vQKn~RD~~~~~ 132 (145)
T PRK11383 118 AVAVQKNIRDAGINP 132 (145)
T ss_pred HHHHHhhhhhhhhcc
Confidence 456789999985543
No 107
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=46.65 E-value=1.2e+02 Score=22.53 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=37.1
Q ss_pred HHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643 185 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA 241 (294)
Q Consensus 185 ~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 241 (294)
+.+++.+++.- +..+.|.--++..-|+| +...++..+|.-+...|...+..|
T Consensus 20 ~~mtvwe~~~P-~~~R~GfLpi~TTRGDR----LFIsLL~sA~I~L~Wlgl~~~~lW 71 (88)
T PF09928_consen 20 AGMTVWEIRSP-TVERKGFLPIETTRGDR----LFISLLGSAFIHLAWLGLVGPSLW 71 (88)
T ss_pred HHHHHHHhcCC-CCCcCceecccCCCcch----hHHHHHHHHHHHHHHHHhcCccHH
Confidence 34566777766 77888998888889987 233344567777888888776656
No 108
>PRK10581 geranyltranstransferase; Provisional
Probab=45.96 E-value=17 Score=33.33 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
+.+++.+..|+.|+. +|.+.|+.|+|+.+|.+.+.....-+
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~ 266 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 445678888888874 45678999999999998887765443
No 109
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=36.38 E-value=2.1e+02 Score=22.50 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=24.1
Q ss_pred hhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHH----HHHhhhH
Q 022643 63 VDKVNKPYLPLASGEISMGTGIAITLASALMSLAY----AVMIRSP 104 (294)
Q Consensus 63 ~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l----~~~l~~~ 104 (294)
-|+.|+ .|.+=+-+|..|....+....++++.+ ++..+++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477774 456666778888877665555444444 3444544
No 110
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.95 E-value=2.4e+02 Score=21.97 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=22.5
Q ss_pred hhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 022643 63 VDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 98 (294)
Q Consensus 63 ~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~ 98 (294)
-||.|+ .|.+-+-+|..|..........+++.++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 467774 4666677888898887666655555444
No 111
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=29.22 E-value=1.9e+02 Score=22.55 Aligned_cols=49 Identities=4% Similarity=0.043 Sum_probs=27.1
Q ss_pred ccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 022643 58 LSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPF 106 (294)
Q Consensus 58 ~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~ 106 (294)
|.|+-.+|..-|.-.+...+...++.++....--.+|+.++..+|-.|+
T Consensus 58 ~vE~~~~rlg~~~P~Lt~~Q~~~~~~r~a~~~G~~~Gv~iGClLGM~PL 106 (111)
T PF10507_consen 58 YVERLAQRLGLKAPVLTPAQLNSRSTRWASNLGRAIGVTIGCLLGMFPL 106 (111)
T ss_pred HHHHHHHHhCCCCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544333334444555555555555666667777766665444
No 112
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=27.91 E-value=2.5e+02 Score=22.80 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCcccccccCHHHHHH
Q 022643 70 YLPLASGEISMGTGIA 85 (294)
Q Consensus 70 ~Rpi~sG~is~~~a~~ 85 (294)
--|+++|+++.++...
T Consensus 58 LvPiAtGki~~~~l~~ 73 (140)
T PF04284_consen 58 LVPIATGKIGFKDLLN 73 (140)
T ss_pred HccccCCCcCHHHHHH
Confidence 4699999999998754
No 113
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=27.36 E-value=4.8e+02 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=15.5
Q ss_pred HHHHHHhcCCcccc-ccccC-chhhHHHHHH
Q 022643 114 IFVGTAYSVQLPLL-RWKGN-SFLAAFCMVS 142 (294)
Q Consensus 114 ~~l~~~Ys~~~pp~-rlKr~-~~~~~~~~~~ 142 (294)
+.+..+|.. +|+. +.|++ -..|.+..++
T Consensus 202 ~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai 231 (303)
T COG1295 202 LGFFLLYRF-LPNVRVLKWRDVLPGALLAAI 231 (303)
T ss_pred HHHHHHHHH-cCCccccchHHhhhhHHHHHH
Confidence 455778887 6776 34444 3445544433
No 114
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=26.69 E-value=37 Score=30.17 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCChHh-----------hHhcCCccchhhccHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFR 217 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~a~~ 217 (294)
+..++.+.+|+.|..+ |.+.|+.|+|+.++.+++..
T Consensus 178 lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~ 224 (260)
T PF00348_consen 178 LGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERARE 224 (260)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHH
No 115
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=26.38 E-value=2e+02 Score=26.49 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHH
Q 022643 186 IAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 228 (294)
Q Consensus 186 ~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~ 228 (294)
..+-.|+.| ++|.++|+.|....+|+..+....-.++.-++-
T Consensus 82 SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~ 123 (322)
T COG0142 82 SLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFE 123 (322)
T ss_pred HHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHH
Confidence 345567766 678999999999999999887776665544443
No 116
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=26.26 E-value=3.3e+02 Score=21.59 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHH-hhcCCCChHHHHHHHHH
Q 022643 249 GHGILASIFWLRV-RAVDLSDNASILSFYMF 278 (294)
Q Consensus 249 ~~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~ 278 (294)
..++.-..+.++. ++-. ++++..++||.-
T Consensus 47 i~~LPn~~Fa~~aF~~~~-~~~~~~~sFy~G 76 (126)
T PRK06099 47 SAFLPFCLFVYWIFFRKQ-KNSSKLTAFYRG 76 (126)
T ss_pred HHHHhHHHHHHHHHHhcc-chHHHHHHHHHH
Confidence 3344445555554 2222 677788899974
No 117
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=25.98 E-value=2.7e+02 Score=20.47 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhc
Q 022643 30 LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN 67 (294)
Q Consensus 30 ~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n 67 (294)
.+......+.+...+..+...+..-.|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 45555667777888888888899999999999888764
No 118
>PRK09669 putative symporter YagG; Provisional
Probab=24.76 E-value=3.7e+02 Score=25.33 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=10.1
Q ss_pred HhhcccChhhhhhcCC
Q 022643 54 AINQLSDVEVDKVNKP 69 (294)
Q Consensus 54 ~iNd~~D~~~D~~n~p 69 (294)
.+.|..|+|+.+..+|
T Consensus 343 m~ad~~d~~e~~~G~r 358 (444)
T PRK09669 343 MFSDVVDYEEKRSGRR 358 (444)
T ss_pred HHHhhhhhhhhhcCcC
Confidence 3557778777665443
No 119
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=24.17 E-value=2.9e+02 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=24.4
Q ss_pred hhcccChhhhhhcCCCCcccc----------cccCHHHHHHHHHHHHHHHHHH
Q 022643 55 INQLSDVEVDKVNKPYLPLAS----------GEISMGTGIAITLASALMSLAY 97 (294)
Q Consensus 55 iNd~~D~~~D~~n~p~Rpi~s----------G~is~~~a~~~~~~~~~~~l~l 97 (294)
+||-.++|.|.++++++.-.+ =++|-+||+.+..+..+.+..+
T Consensus 169 LNnrlE~eV~~i~~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~~~~l~ 221 (237)
T PF13748_consen 169 LNNRLEKEVDIIERRKPASLRRHYRRLSRLRIRLSDREALGYLLIGIVAALLF 221 (237)
T ss_pred HhHHHHHHccHhhcCChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHH
Confidence 566666666666554222111 2568888888766655544433
No 120
>PRK08049 F0F1 ATP synthase subunit I; Validated
Probab=22.60 E-value=3.9e+02 Score=21.13 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=30.3
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHH---HHHHHH
Q 022643 209 MLGKERVFRLSVSMLSIAYGAAVVVGASSP-FLANKLITIIGHGILASIFWLRVRAVDLSDNAS---ILSFYM 277 (294)
Q Consensus 209 ~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~---~~~f~~ 277 (294)
..|+|-+++....-..+.......+..... ..+....-++..++....+.++..+....++++ .++||.
T Consensus 5 l~~~kla~klll~Q~~~~~~~s~~~~~~~~~~~~Sal~Ggl~~~lPn~~Fa~~afr~~~~~~a~~~v~~sFy~ 77 (124)
T PRK08049 5 LYSGKVARKLLLLQLLTFVASGALFSLKDPFWGVSALAGGLAAWLPNVLFMIFAWRHQAHTPAKGRVAWSFAF 77 (124)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhHHHHHhHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 567787777765543222222222222111 222223333344555566665554333322222 257775
No 121
>CHL00151 preA prenyl transferase; Reviewed
Probab=22.29 E-value=47 Score=30.74 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCChHh-----------hHhcCCccchhhccHHH
Q 022643 182 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKER 214 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~ 214 (294)
+.+++.+..|+.|..+ |.+.|+.|+|+.++.+.
T Consensus 207 lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 207 LGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 3456677888887654 77889999999998653
No 122
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=21.96 E-value=50 Score=29.30 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCChHh-----------hHhcCCccchhhcc
Q 022643 182 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLG 211 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G 211 (294)
+..++.+.+|+.|..+ |.+.|+.|+|+.++
T Consensus 181 lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~ 221 (259)
T cd00685 181 LGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLA 221 (259)
T ss_pred HHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHH
No 123
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.80 E-value=2e+02 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=18.7
Q ss_pred HHHhhcCChHhhHhcCCccchhhcc
Q 022643 187 AFIKDLHDVDGDKKFGIKTLSVMLG 211 (294)
Q Consensus 187 ~~i~d~~D~e~D~~~G~~Tlpv~~G 211 (294)
+-+-+-++++++.|.+++.+-..-|
T Consensus 116 ~~iL~~p~V~~~~K~~i~~i~~~Kg 140 (155)
T PF10777_consen 116 DKILQSPQVPDEIKQGIQRIISTKG 140 (155)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 4566788888899988877665554
No 124
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=21.67 E-value=43 Score=30.96 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=26.7
Q ss_pred HHHHHHhhcCChHh-----------hHhcCCccchhhccHHHHHH
Q 022643 184 VVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFR 217 (294)
Q Consensus 184 ~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~a~~ 217 (294)
+++.+..|+-|+.+ |.+.|++|+|+.++.+.+..
T Consensus 208 laFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 208 LAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 45678888888877 45668899999999886655
No 125
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=21.60 E-value=4.7e+02 Score=21.65 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 022643 40 EALVPAVLMHIYVVAINQLS 59 (294)
Q Consensus 40 ~~ll~~~l~~~a~~~iNd~~ 59 (294)
..-++..+.-+.++.+++|.
T Consensus 32 ~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 32 LAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777788886
No 126
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=20.57 E-value=66 Score=29.74 Aligned_cols=42 Identities=5% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHH
Q 022643 45 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLA 89 (294)
Q Consensus 45 ~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~ 89 (294)
.=++|.++-+.+|+.|... .+|.+|-+..+...+.|...+=.
T Consensus 76 vEliH~asLiHDDiiD~s~---~RRG~pt~h~~~G~~~Ail~GD~ 117 (322)
T TIGR02749 76 TEMIHTASLVHDDVIDESD---TRRGIETVHSLFGTRVAVLAGDF 117 (322)
T ss_pred HHHHHHHHHHHcccccCcc---ccCCCccHHHHhCcHHHHHHHHH
Confidence 3389999999999976543 34466665555556666554433
No 127
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.38 E-value=3.3e+02 Score=19.43 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022643 211 GKERVFRLSVSMLSIAYGAAVVVGASSP 238 (294)
Q Consensus 211 G~~~a~~~~~~l~~~~~~~~~~~~~~~~ 238 (294)
|.|.+-++...++.++.+...+.|+...
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666666666666776654
Done!