Query 022643
Match_columns 294
No_of_seqs 241 out of 2039
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 51.4 6 0.00021 35.1 1.9 42 182-223 215-267 (304)
2 3m0g_A Farnesyl diphosphate sy 51.3 7.2 0.00025 34.4 2.3 41 182-222 208-259 (297)
3 3kra_B Geranyl diphosphate syn 51.2 55 0.0019 28.2 8.1 44 184-227 74-117 (274)
4 3lom_A Geranyltranstransferase 49.8 6.4 0.00022 35.1 1.8 40 183-222 223-273 (313)
5 3ts7_A Geranyltranstransferase 48.6 6.2 0.00021 35.4 1.5 40 183-222 222-272 (324)
6 3p8l_A Geranyltranstransferase 46.2 7.3 0.00025 34.5 1.5 41 183-223 219-270 (302)
7 3p8r_A Geranyltranstransferase 44.4 7.3 0.00025 34.5 1.3 39 184-222 223-272 (302)
8 4f62_A Geranyltranstransferase 44.1 7.8 0.00027 34.6 1.4 41 183-223 215-266 (317)
9 3llw_A Geranyltranstransferase 42.2 8.4 0.00029 34.2 1.3 41 182-222 222-271 (311)
10 2h8o_A Geranyltranstransferase 41.5 9.2 0.00031 34.4 1.5 40 183-222 255-305 (335)
11 3uca_A Geranyltranstransferase 41.4 9.6 0.00033 34.1 1.6 40 183-222 244-294 (324)
12 1rqj_A Geranyltranstransferase 37.9 15 0.00052 32.3 2.3 40 183-222 216-266 (299)
13 3pde_A Farnesyl-diphosphate sy 37.9 23 0.0008 31.3 3.5 40 183-222 218-268 (309)
14 2j1p_A Geranylgeranyl pyrophos 36.3 12 0.00041 32.9 1.3 38 182-222 225-262 (293)
15 1rtr_A Geranyltranstransferase 35.6 12 0.00041 33.0 1.2 40 183-222 211-261 (301)
16 3qkc_B Geranyl diphosphate syn 29.0 2.1E+02 0.0073 24.4 8.2 42 184-227 79-120 (273)
17 3npk_A Geranyltranstransferase 28.7 17 0.00058 31.9 1.0 40 182-221 207-255 (291)
18 3mzv_A Decaprenyl diphosphate 24.0 3.2E+02 0.011 24.1 8.7 39 184-223 87-125 (341)
19 2e8v_A Geranylgeranyl pyrophos 21.4 33 0.0011 30.7 1.4 46 46-94 70-115 (340)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=51.42 E-value=6 Score=35.09 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCChHh-----------hHhcCCccchhhccHHHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSML 223 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~a~~~~~~l~ 223 (294)
..+++.+..|+.|..+ |.+.|+.|+|+.+|.++++....-+.
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3445677888888755 66789999999999999987765443
No 2
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=51.29 E-value=7.2 Score=34.44 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCChHh-----------hHhcCCccchhhccHHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
...++.+..|+.|..+ |.+.|+.|+|+++|.++++....-+
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 259 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADL 259 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 3456788999999865 6678999999999999888776543
No 3
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=51.22 E-value=55 Score=28.23 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=31.0
Q ss_pred HHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 227 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~ 227 (294)
.+..+-.|+++.++|.++|++|.-.++|.+.+....-.++..++
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 34567789994444567999999999999977655544443333
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=49.84 E-value=6.4 Score=35.07 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCChHh-----------hHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.+++.+..|+.|..+ |.+.|+.|+|+.+|.++++....-+
T Consensus 223 GlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~ 273 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVH 273 (313)
T ss_dssp HHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 345567777777654 6788999999999999988776544
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=48.62 E-value=6.2 Score=35.37 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.+++.+..|+.|.. .|.+.|+.|+|+++|.++++....-+
T Consensus 222 GlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 222 GLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 34556667776664 47788999999999999988776544
No 6
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=46.21 E-value=7.3 Score=34.52 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCh-----------HhhHhcCCccchhhccHHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDV-----------DGDKKFGIKTLSVMLGKERVFRLSVSML 223 (294)
Q Consensus 183 ~~~~~~i~d~~D~-----------e~D~~~G~~Tlpv~~G~~~a~~~~~~l~ 223 (294)
.+++.+..|+.|. .+|.+.|+.|+|+++|.++++....-+.
T Consensus 219 GlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~ 270 (302)
T 3p8l_A 219 GLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQL 270 (302)
T ss_dssp HHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3455666777666 3578889999999999999987765443
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=44.40 E-value=7.3 Score=34.48 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 184 ~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.++.+..|+.|.. .|.+.|+.|+|+.+|.++++....-.
T Consensus 223 ~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 272 (302)
T 3p8r_A 223 LAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTL 272 (302)
T ss_dssp HHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 3456666666654 46788999999999999888776543
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=44.15 E-value=7.8 Score=34.57 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSML 223 (294)
Q Consensus 183 ~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l~ 223 (294)
..++.+..|+.|.. .|.+.|+.|+|+++|.++++....-..
T Consensus 215 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 266 (317)
T 4f62_A 215 GLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLH 266 (317)
T ss_dssp HHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34556777777764 477889999999999999988775543
No 9
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=42.23 E-value=8.4 Score=34.24 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCChHhhH---------hcCCccchhhccHHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDGDK---------KFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~D~---------~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
...++.+..|+.|..+|. +.|+.|+|+++|.++++....-+
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~ 271 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTL 271 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 345667888888888775 57999999999999887665443
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=41.50 E-value=9.2 Score=34.37 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.+++.+..|+.|.. +|.+.|+.|+|+.+|.+.++....-+
T Consensus 255 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~ 305 (335)
T 2h8o_A 255 GLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 34556777777664 46778999999999988887766543
No 11
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=41.38 E-value=9.6 Score=34.09 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.+++.+..|+.|.. +|.+.|+.|+|+.+|.++++....-+
T Consensus 244 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~ 294 (324)
T 3uca_A 244 GLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNI 294 (324)
T ss_dssp HHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHH
Confidence 34556667776663 57888999999999999888776544
No 12
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=37.95 E-value=15 Score=32.25 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.+++.+..|+.|.. +|.+.|+.|+|+.+|.+.++....-.
T Consensus 216 G~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 266 (299)
T 1rqj_A 216 GLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_dssp HHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 34556777777665 46677999999999998877665443
No 13
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=37.91 E-value=23 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCChH-----------hhHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e-----------~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
..++.+..|+.|.. .|.+.|+.|+|+++|.++++....-+
T Consensus 218 GlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~ 268 (309)
T 3pde_A 218 GLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDT 268 (309)
T ss_dssp HHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHH
Confidence 34556777777764 57888999999999999887765543
No 14
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=36.32 E-value=12 Score=32.89 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
..+++.+..|+.|..+|. ++|+|+.+|.+.++....-+
T Consensus 225 lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 225 IGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 345678899999999998 89999999999888776543
No 15
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=35.62 E-value=12 Score=33.02 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCChHh-----------hHhcCCccchhhccHHHHHHHHHHH
Q 022643 183 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 222 (294)
Q Consensus 183 ~~~~~~i~d~~D~e~-----------D~~~G~~Tlpv~~G~~~a~~~~~~l 222 (294)
.+++.+..|+.|..+ |.+.|+.|+|+.+|.+.++....-+
T Consensus 211 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~ 261 (301)
T 1rtr_A 211 GMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYH 261 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 445677788877754 6677999999999998887766544
No 16
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=29.00 E-value=2.1e+02 Score=24.37 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=30.3
Q ss_pred HHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 227 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~ 227 (294)
.+..+-.|++|.+. ++|+.|.-.++|.+.+....=.++..++
T Consensus 79 ~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 120 (273)
T 3qkc_B 79 VAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGL 120 (273)
T ss_dssp HHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 34567789998754 7899999999999977665554444443
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=28.74 E-value=17 Score=31.92 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCChHhhH---------hcCCccchhhccHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDGDK---------KFGIKTLSVMLGKERVFRLSVS 221 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~D~---------~~G~~Tlpv~~G~~~a~~~~~~ 221 (294)
...++.+..|+.|..+|. ..|+.|+|+++|.++++....-
T Consensus 207 lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~ 255 (291)
T 3npk_A 207 LGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKEN 255 (291)
T ss_dssp HHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHH
Confidence 344567788888887764 3689999999999988765543
No 18
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=24.02 E-value=3.2e+02 Score=24.09 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSML 223 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~ 223 (294)
.+..+..|+.| ++|.++|+.|.-.++|.+.+....-.++
T Consensus 87 ~asLiHDDI~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~ 125 (341)
T 3mzv_A 87 TATLLHDDVVD-ESRQRRGRPTANLLWDNKSSVLVGDYLF 125 (341)
T ss_dssp HHHHHHHHC-------CTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCccC-CCCCcCCCccHHHhcChHHHHHHHHHHH
Confidence 34566788887 4567789999999999987765554443
No 19
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=21.39 E-value=33 Score=30.70 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHH
Q 022643 46 VLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMS 94 (294)
Q Consensus 46 ~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~ 94 (294)
=++|.+.-+..|+.|.+.- +|.+|-...+...+.|...+=.+...+
T Consensus 70 EliH~asLiHDDI~D~s~~---RRG~pt~h~~~G~~~AIl~GD~L~~~a 115 (340)
T 2e8v_A 70 ELLHNSSLLIDDIEDNAPL---RRGQTTSHLIFGVPSTINTANYMYFRA 115 (340)
T ss_dssp HHHHHHHHHHHHHHTTCSE---ETTEECHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCCCC---CCCCcchhhccCchHHHHHHHHHHHHH
Confidence 3889999999999665543 345565555555666655544443333
Done!