Query 022643
Match_columns 294
No_of_seqs 241 out of 2039
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 08:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 78.3 11 0.00084 30.6 11.6 53 44-97 69-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 50.4 26 0.0019 28.4 8.0 45 184-228 78-123 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 40.6 43 0.0031 26.9 7.8 42 182-223 73-115 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 39.8 5.3 0.00038 33.0 1.7 51 44-95 72-122 (299)
5 d1v4ea_ a.128.1.1 (A:) Octopre 27.8 58 0.0042 25.9 6.5 41 184-225 67-107 (280)
6 d2q80a1 a.128.1.1 (A:6-296) Ge 24.2 69 0.0051 25.5 6.3 42 184-226 53-94 (291)
7 d1iwga8 f.35.1.1 (A:513-566,A: 17.9 1.6E+02 0.012 22.0 7.1 11 48-58 125-135 (222)
8 d2q80a1 a.128.1.1 (A:6-296) Ge 17.4 18 0.0013 29.4 0.9 49 46-97 49-97 (291)
9 d1v4ea_ a.128.1.1 (A:) Octopre 15.3 15 0.0011 29.7 -0.1 49 44-95 61-109 (280)
10 d1fpsa_ a.128.1.1 (A:) Farnesy 14.3 14 0.001 30.9 -0.6 33 182-214 230-272 (348)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=78.31 E-value=11 Score=30.63 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 97 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l 97 (294)
+.=++|.+.-+..|+.|.|.|.. +|.+|-...+.....|...+-.+...+.-+
T Consensus 69 avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 69 ALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 44489999999999998877653 456676666666666666555444444433
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=50.40 E-value=26 Score=28.45 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=33.8
Q ss_pred HHHHHHhhcCChHh-hHhcCCccchhhccHHHHHHHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDG-DKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 228 (294)
Q Consensus 184 ~~~~~i~d~~D~e~-D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~ 228 (294)
.+..+..|++|.+. |.++|++|.-..+|.+.+....-.++..++-
T Consensus 78 ~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~ 123 (299)
T d1rqja_ 78 AYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHH
Confidence 34566789998887 5899999999999999886666555444443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=40.57 E-value=43 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCChHhh-HhcCCccchhhccHHHHHHHHHHHH
Q 022643 182 FCVVIAFIKDLHDVDGD-KKFGIKTLSVMLGKERVFRLSVSML 223 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~D-~~~G~~Tlpv~~G~~~a~~~~~~l~ 223 (294)
.-.+..+..|++|+++| .++|++|.-.++|.+.+....-.++
T Consensus 73 lH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~ 115 (290)
T d1rtra_ 73 IHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALL 115 (290)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchh
Confidence 33445677899988765 6999999999999997766655444
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=39.81 E-value=5.3 Score=33.02 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHH
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSL 95 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l 95 (294)
+.=++|.++-+..|+-|.|.|.. +|.+|-...+...+.|...+-.+...++
T Consensus 72 aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 72 AVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHH
Confidence 44489999999999998776542 3456655555566666655544444443
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=27.82 E-value=58 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 225 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~ 225 (294)
.+..+..|+.| ++|.++|++|.-..+|.+.+....-.++..
T Consensus 67 ~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~ 107 (280)
T d1v4ea_ 67 LASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVS 107 (280)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHh
Confidence 34456678877 678899999999999999876665544433
No 6
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.15 E-value=69 Score=25.50 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHH
Q 022643 184 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 226 (294)
Q Consensus 184 ~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~ 226 (294)
.+..+..|+.| ++|.++|+.|.-..+|.+.+....-.++..+
T Consensus 53 ~asLihDDi~D-~~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a 94 (291)
T d2q80a1 53 NASLLIDDIED-NSKLRRGFPVAHSIYGIPSVINSANYVYFLG 94 (291)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccc-CcccccCCCccccccchhhhhhHHHHHHHHH
Confidence 34455567765 4468899999999999997766655544333
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.88 E-value=1.6e+02 Score=22.03 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=4.3
Q ss_pred HHHHHHHhhcc
Q 022643 48 MHIYVVAINQL 58 (294)
Q Consensus 48 ~~~a~~~iNd~ 58 (294)
...+....+++
T Consensus 125 v~~~i~~~~~~ 135 (222)
T d1iwga8 125 AKNAILIVEFA 135 (222)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 33333334433
No 8
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.35 E-value=18 Score=29.40 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 022643 46 VLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 97 (294)
Q Consensus 46 ~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l 97 (294)
=++|.+.-+.+|+.|.+.- +|.+|-...+.....|...+-.+...++-.
T Consensus 49 EllH~asLihDDi~D~~~~---RRg~pt~~~~~G~~~Ail~gd~l~~~a~~~ 97 (291)
T d2q80a1 49 EMLHNASLLIDDIEDNSKL---RRGFPVAHSIYGIPSVINSANYVYFLGLEK 97 (291)
T ss_dssp HHHHHHHHHHHHHHHTCSE---ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCccc---ccCCCccccccchhhhhhHHHHHHHHHHHh
Confidence 3899999999999765543 345555555666677766655555544433
No 9
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=15.35 E-value=15 Score=29.69 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHH
Q 022643 44 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSL 95 (294)
Q Consensus 44 ~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l 95 (294)
+.=++|.+.-+..|+.|.+. .+|.+|-...+.....+...+-.+...+.
T Consensus 61 aiEliH~asLIhDDi~D~s~---~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 61 ALELVHLASLLHDDVIDGAR---FRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCS---EETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhhcc---cccccchhhhccchhhhhhhHHHHHHhhh
Confidence 33488999999999866432 24556666556666666655544444443
No 10
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.26 E-value=14 Score=30.93 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCChHh----------hHhcCCccchhhccHHH
Q 022643 182 FCVVIAFIKDLHDVDG----------DKKFGIKTLSVMLGKER 214 (294)
Q Consensus 182 ~~~~~~~i~d~~D~e~----------D~~~G~~Tlpv~~G~~~ 214 (294)
+..++.+..|+.|..+ |.+.|++|+|+.+..+.
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Done!