BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022648
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58
Query: 88 FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K EV LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 59 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEVS 234
+N A +Q+KKLY LF + D T +EV+
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVN 206
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 59
Query: 88 FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K EV LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEVS 234
+N A +Q+KKLY LF + D T +EV+
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVN 207
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 59
Query: 88 FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K EV LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEVS 234
+N A +Q+KKLY LF + D T +EV+
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVN 207
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
+N+HEYQ +L A+YG+ P G A + E ++A A P VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86 GTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 57 A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
++DR + + + ++GG IE +AE+ P++I KV +D G + LA
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252
K+ ++Q K++ +F E D L+E++ LIC+ +G
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLG 217
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 22/228 (9%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
+N+HEYQ +L A+YG+ P G A + E ++A A P VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86 GTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 57 A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
++DR + + + ++GG IE +AE+ P++I KV +D G + LA
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEVSMNFYISLVLLICMS 248
K+ ++Q K++ +F E D L+E++ LIC+
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLD 213
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 22/232 (9%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
+N+HEYQ +L A+YG+ P G A + E ++A A P VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86 GTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 57 A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
++DR + + + ++GG IE +AE+ P++I KV +D G + LA
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252
K+ ++Q K++ +F E D L+ ++ LIC+ +G
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIAINPLVITKQGDLICLDGKLG 217
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 23/210 (10%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ E++A+YG+ VP G VA E K I + F K +V+K+Q+ GGRG
Sbjct: 1 MNLHEYQAKEILARYGVPVPPG-KVAYTPEEAKRIAEEF--GKRVVIKAQVHVGGRGKA- 56
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
GGV + +E + A +LG + +G V KV + E + + E Y
Sbjct: 57 ------GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAG 103
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAP 204
++LDR +++ +GG IE++A + P I K ID G +A ++V GL
Sbjct: 104 LILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLE- 162
Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEVS 234
+ N + + LY+ + D ++ E++
Sbjct: 163 --GNLNKLAQVLVALYRAYEGVDASIAEIN 190
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
+ G++++ ++ L + G Q+ L + + ELM KYGI A S +E K
Sbjct: 95 LASGIVDRFMAEGLRIFGPSQRAAL--IEGSKAFAKELMKKYGIPTADHAAFTSYEEAKA 152
Query: 61 AI-QDAFPDHKELVVKSQILAGGRGL 85
I Q P +V+K+ LA G+G+
Sbjct: 153 YIEQKGAP----IVIKADGLAAGKGV 174
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKSG 91
Y+ E KY +N + V + +E+K A+++ P ++VK+ L G +
Sbjct: 111 YKXKEAFKKYNVNTARHFVVRNENELKNALENLKLP----VIVKATDLQGSK-------- 158
Query: 92 LKGGVHIVKKEE 103
G++I KKEE
Sbjct: 159 ---GIYIAKKEE 167
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 38/151 (25%)
Query: 103 EVEDLAGKMLGQILVTKQTGPQGKIVS------------KVYLCEKLSLVNEMY-FAIML 149
E+ +L + + Q V + +G IVS E +SL Y A+ L
Sbjct: 7 EISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNL 66
Query: 150 DRKTAGPIIIGCSKGGTSIEDLAE----KYPNMIVKVPID------VFN---------GI 190
+R + G +++G DLAE K I++VP+ V N G
Sbjct: 67 ERDSVGAVVMG------PYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP 120
Query: 191 TDEDAAKVVDGLAPKVADRNDAIEQVKKLYK 221
D D V+ +AP V +R + V+ YK
Sbjct: 121 LDHDGFSAVEAIAPGVIERQSVDQPVQTGYK 151
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 74 VKSQILAGGRGLGTFKSGLKGG-VHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVY 132
++ + A G+G GTF G G V + K+ + EDL + ++VT T G + V
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVT-ATEDSGGFSTSVD 309
Query: 133 LCEKLSLVNE 142
L +++ VN+
Sbjct: 310 LTIRVTDVND 319
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 74 VKSQILAGGRGLGTFKSGLKGG-VHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVY 132
++ + A G+G GTF G G V + K+ + EDL + ++VT T G + V
Sbjct: 246 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA-TEDSGGFSTSVD 304
Query: 133 LCEKLSLVNE 142
L +++ VN+
Sbjct: 305 LTIRVTDVND 314
>pdb|3FLE|A Chain A, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis.
pdb|3FLE|B Chain B, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis
Length = 249
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 158 IIGCSKGGTSIEDLAEKY------PNMIVKVPI-DVFNGI--TDEDAAKVVDGLAPKVAD 208
+G S G S + Y P + +V I V+NGI +E+ +++ K +
Sbjct: 101 FVGHSXGNXSFAFYXKNYGDDRHLPQLKKEVNIAGVYNGILNXNENVNEIIVDKQGKPSR 160
Query: 209 RNDAIEQVKKLYKLFCESDCTLLEV 233
N A Q+ LYK++C + +L +
Sbjct: 161 XNAAYRQLLSLYKIYCGKEIEVLNI 185
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|MM Chain m, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 128
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 54 SVDEVKKAIQDA---FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99
++D VK IQD PD + L+ + L GR L + + +H+V
Sbjct: 22 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|B Chain B, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|C Chain C, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|D Chain D, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|E Chain E, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|F Chain F, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|G Chain G, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|H Chain H, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|I Chain I, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
pdb|3M1A|J Chain J, The Crystal Structure Of A Short-Chain Dehydrogenase From
Streptomyces Avermitilis To 2a
Length = 281
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 155 GPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 189
G +IG ++ +++DL YP+ + +DV +G
Sbjct: 29 GDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDG 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,539,027
Number of Sequences: 62578
Number of extensions: 293602
Number of successful extensions: 975
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 21
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)