Query 022648
Match_columns 294
No_of_seqs 156 out of 1532
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00124 succinyl-CoA ligase [ 100.0 2.1E-49 4.5E-54 385.9 25.6 248 1-251 1-251 (422)
2 PF08442 ATP-grasp_2: ATP-gras 100.0 7E-49 1.5E-53 349.0 18.7 201 29-238 1-202 (202)
3 COG0045 SucC Succinyl-CoA synt 100.0 9.1E-47 2E-51 357.1 23.7 214 28-253 1-217 (387)
4 PRK14046 malate--CoA ligase su 100.0 2.2E-44 4.7E-49 348.9 25.1 215 28-252 1-217 (392)
5 TIGR01016 sucCoAbeta succinyl- 100.0 1.5E-41 3.2E-46 328.3 24.5 217 28-253 1-218 (386)
6 PRK00696 sucC succinyl-CoA syn 100.0 2.9E-40 6.2E-45 319.6 25.7 215 28-252 1-217 (388)
7 KOG2799 Succinyl-CoA synthetas 100.0 7.4E-42 1.6E-46 319.0 13.6 240 8-253 7-248 (434)
8 PLN02235 ATP citrate (pro-S)-l 100.0 1.5E-39 3.3E-44 314.3 22.7 204 28-252 4-217 (423)
9 KOG1447 GTP-specific succinyl- 100.0 2.4E-39 5.3E-44 293.5 17.4 227 23-251 15-242 (412)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 1.2E-38 2.7E-43 287.1 18.3 204 24-252 4-221 (222)
11 PF01071 GARS_A: Phosphoribosy 99.5 1.1E-12 2.4E-17 116.1 13.1 107 31-159 2-110 (194)
12 PRK01372 ddl D-alanine--D-alan 99.4 5.7E-12 1.2E-16 117.4 14.8 99 26-152 93-192 (304)
13 PF02786 CPSase_L_D2: Carbamoy 99.4 4.8E-12 1E-16 113.6 12.8 136 32-197 2-140 (211)
14 PF07478 Dala_Dala_lig_C: D-al 99.4 2.4E-12 5.2E-17 114.7 8.8 175 38-263 1-203 (203)
15 PLN02257 phosphoribosylamine-- 99.4 5.5E-11 1.2E-15 117.3 19.1 109 28-158 99-208 (434)
16 COG0151 PurD Phosphoribosylami 99.3 8.8E-12 1.9E-16 120.6 11.7 133 2-158 76-209 (428)
17 PRK01966 ddl D-alanyl-alanine 99.3 1.8E-11 3.8E-16 116.5 13.6 95 28-150 120-219 (333)
18 PRK14572 D-alanyl-alanine synt 99.3 1.3E-11 2.8E-16 118.1 12.6 200 24-266 123-346 (347)
19 PRK06019 phosphoribosylaminoim 99.3 6.6E-11 1.4E-15 114.2 17.5 184 27-262 96-290 (372)
20 PRK13789 phosphoribosylamine-- 99.3 5.7E-11 1.2E-15 116.9 17.2 103 28-152 105-208 (426)
21 PRK14569 D-alanyl-alanine synt 99.3 2.4E-11 5.2E-16 113.7 13.3 191 26-265 93-295 (296)
22 TIGR01161 purK phosphoribosyla 99.3 1.5E-10 3.3E-15 110.5 18.3 182 28-261 95-287 (352)
23 PRK12815 carB carbamoyl phosph 99.3 6.3E-11 1.4E-15 128.2 17.2 168 28-237 125-303 (1068)
24 PRK14568 vanB D-alanine--D-lac 99.3 2.7E-11 5.9E-16 115.6 12.1 95 28-152 129-224 (343)
25 PLN02948 phosphoribosylaminoim 99.3 3.7E-10 8E-15 115.1 20.1 185 28-262 118-313 (577)
26 PRK14570 D-alanyl-alanine synt 99.3 9.7E-11 2.1E-15 113.1 14.6 198 28-266 126-347 (364)
27 COG1042 Acyl-CoA synthetase (N 99.3 4.6E-12 9.9E-17 128.8 5.5 126 26-186 467-593 (598)
28 PRK14573 bifunctional D-alanyl 99.3 1.2E-10 2.6E-15 122.8 16.2 99 27-152 564-670 (809)
29 TIGR00514 accC acetyl-CoA carb 99.3 3.4E-10 7.3E-15 111.7 18.2 111 27-160 111-224 (449)
30 PRK08654 pyruvate carboxylase 99.2 3E-10 6.5E-15 113.9 17.9 171 27-237 111-292 (499)
31 TIGR00877 purD phosphoribosyla 99.2 7E-10 1.5E-14 108.2 20.0 100 30-152 103-204 (423)
32 PRK00885 phosphoribosylamine-- 99.2 3.3E-10 7.2E-15 110.7 17.7 103 28-152 99-202 (420)
33 PRK08591 acetyl-CoA carboxylas 99.2 2.6E-10 5.7E-15 112.2 16.5 170 28-237 112-293 (451)
34 PRK13790 phosphoribosylamine-- 99.2 7.2E-10 1.6E-14 107.4 19.1 103 24-152 60-163 (379)
35 PRK05586 biotin carboxylase; V 99.2 3.6E-10 7.8E-15 111.5 16.7 171 27-237 111-293 (447)
36 TIGR01369 CPSaseII_lrg carbamo 99.2 3.1E-10 6.8E-15 122.7 16.5 165 29-238 125-303 (1050)
37 PRK07178 pyruvate carboxylase 99.2 5.7E-10 1.2E-14 111.0 16.7 171 27-237 110-292 (472)
38 PRK12833 acetyl-CoA carboxylas 99.2 1.1E-09 2.4E-14 108.8 18.7 104 28-152 115-221 (467)
39 TIGR01205 D_ala_D_alaTIGR D-al 99.2 3.5E-10 7.6E-15 105.8 14.3 97 28-152 102-205 (315)
40 PRK05294 carB carbamoyl phosph 99.2 4.8E-10 1E-14 121.4 16.6 166 28-238 125-305 (1066)
41 PRK08462 biotin carboxylase; V 99.2 1.3E-09 2.7E-14 107.4 17.2 105 27-152 113-220 (445)
42 PLN02735 carbamoyl-phosphate s 99.1 1.1E-09 2.4E-14 118.8 17.5 165 29-237 142-321 (1102)
43 PLN02735 carbamoyl-phosphate s 99.1 1.2E-09 2.5E-14 118.6 17.6 170 25-237 696-876 (1102)
44 TIGR01142 purT phosphoribosylg 99.1 7.7E-09 1.7E-13 99.3 20.9 100 30-152 99-200 (380)
45 PF13535 ATP-grasp_4: ATP-gras 99.1 5.8E-09 1.3E-13 89.0 17.9 96 31-150 4-100 (184)
46 PRK09288 purT phosphoribosylgl 99.1 7.5E-09 1.6E-13 99.9 20.3 100 30-152 112-213 (395)
47 PRK14571 D-alanyl-alanine synt 99.1 4.3E-10 9.4E-15 105.0 11.3 92 28-152 92-184 (299)
48 COG0458 CarB Carbamoylphosphat 99.1 2.2E-09 4.7E-14 103.7 14.8 166 29-237 114-290 (400)
49 TIGR02712 urea_carbox urea car 99.1 4.7E-09 1E-13 114.7 18.8 111 27-160 110-222 (1201)
50 PRK06111 acetyl-CoA carboxylas 99.1 4.3E-09 9.3E-14 103.4 16.6 106 26-152 110-218 (450)
51 COG0026 PurK Phosphoribosylami 99.1 4E-09 8.6E-14 101.0 15.6 185 27-262 95-290 (375)
52 PF02222 ATP-grasp: ATP-grasp 99.1 4.5E-09 9.7E-14 91.6 14.5 115 39-192 1-116 (172)
53 PRK08463 acetyl-CoA carboxylas 99.1 8.2E-09 1.8E-13 103.0 18.1 173 25-237 108-293 (478)
54 COG0439 AccC Biotin carboxylas 99.0 9.9E-09 2.2E-13 101.4 16.8 107 30-159 114-223 (449)
55 PRK12999 pyruvate carboxylase; 99.0 1.1E-08 2.4E-13 111.3 16.7 112 26-160 114-228 (1146)
56 PRK06524 biotin carboxylase-li 99.0 3.5E-08 7.5E-13 98.4 18.3 97 27-152 138-239 (493)
57 KOG0237 Glycinamide ribonucleo 98.9 5.2E-09 1.1E-13 104.4 11.2 134 2-158 81-215 (788)
58 TIGR01369 CPSaseII_lrg carbamo 98.9 3.9E-08 8.6E-13 106.5 18.7 98 30-152 668-766 (1050)
59 PRK07206 hypothetical protein; 98.9 4.2E-08 9.1E-13 95.4 17.0 100 30-150 107-210 (416)
60 PRK10446 ribosomal protein S6 98.9 1.6E-08 3.5E-13 94.7 13.3 99 27-151 95-196 (300)
61 TIGR01235 pyruv_carbox pyruvat 98.9 4E-08 8.6E-13 106.8 17.8 105 27-152 111-218 (1143)
62 PRK06395 phosphoribosylamine-- 98.9 1.7E-08 3.8E-13 99.6 13.6 98 28-153 102-205 (435)
63 PRK12767 carbamoyl phosphate s 98.9 2.4E-08 5.3E-13 93.7 13.3 93 28-152 108-203 (326)
64 PRK05294 carB carbamoyl phosph 98.9 7.8E-08 1.7E-12 104.4 18.9 98 30-152 668-766 (1066)
65 PRK14016 cyanophycin synthetas 98.9 1.4E-08 3E-13 106.2 12.4 95 28-150 211-307 (727)
66 PRK02186 argininosuccinate lya 98.9 1.3E-07 2.7E-12 101.0 18.9 97 29-152 105-202 (887)
67 PRK12815 carB carbamoyl phosph 98.9 1.1E-07 2.5E-12 103.2 18.7 95 30-152 669-764 (1068)
68 TIGR02068 cya_phycin_syn cyano 98.9 1.8E-08 4E-13 107.1 12.2 94 29-150 211-306 (864)
69 PF08443 RimK: RimK-like ATP-g 98.8 1.2E-08 2.7E-13 89.5 8.2 93 32-150 4-99 (190)
70 TIGR01435 glu_cys_lig_rel glut 98.8 7.2E-08 1.6E-12 100.4 12.6 96 30-152 474-573 (737)
71 PRK05784 phosphoribosylamine-- 98.7 1.3E-07 2.7E-12 94.8 13.2 103 28-152 106-219 (486)
72 COG4770 Acetyl/propionyl-CoA c 98.7 3.4E-07 7.3E-12 91.5 14.9 137 31-197 115-254 (645)
73 PRK02471 bifunctional glutamat 98.7 1.6E-07 3.4E-12 98.6 12.3 94 30-150 487-584 (752)
74 TIGR03103 trio_acet_GNAT GNAT- 98.6 5.3E-07 1.1E-11 91.6 12.2 93 29-150 295-389 (547)
75 TIGR02144 LysX_arch Lysine bio 98.6 6.5E-07 1.4E-11 82.3 11.4 98 28-148 84-183 (280)
76 TIGR00768 rimK_fam alpha-L-glu 98.5 1.4E-06 3.1E-11 79.3 12.5 96 28-147 85-183 (277)
77 KOG0238 3-Methylcrotonyl-CoA c 98.4 3.6E-06 7.9E-11 83.3 13.1 108 31-161 111-221 (670)
78 PRK06849 hypothetical protein; 98.4 4.5E-06 9.8E-11 80.8 13.4 98 24-151 109-208 (389)
79 COG0189 RimK Glutathione synth 98.4 4.8E-06 1E-10 79.3 12.3 103 24-151 112-216 (318)
80 COG1038 PycA Pyruvate carboxyl 98.3 1.4E-05 3E-10 82.9 15.7 142 26-197 116-260 (1149)
81 COG0027 PurT Formate-dependent 98.3 3.1E-06 6.7E-11 79.7 10.1 119 7-150 92-211 (394)
82 COG1181 DdlA D-alanine-D-alani 98.3 2.7E-06 5.9E-11 80.9 9.8 187 28-265 100-316 (317)
83 PRK13278 purP 5-formaminoimida 98.3 9.5E-06 2.1E-10 78.4 11.9 90 30-151 122-212 (358)
84 PF15632 ATPgrasp_Ter: ATP-gra 98.2 1.1E-05 2.4E-10 77.1 10.8 105 24-151 100-219 (329)
85 KOG0369 Pyruvate carboxylase [ 98.0 0.00014 3E-09 74.5 13.6 166 31-237 147-325 (1176)
86 PRK13277 5-formaminoimidazole- 97.6 0.00068 1.5E-08 65.6 10.9 92 33-152 128-220 (366)
87 KOG1254 ATP-citrate lyase [Ene 97.5 1.3E-05 2.8E-10 79.1 -1.4 155 70-242 80-251 (600)
88 PF02655 ATP-grasp_3: ATP-gras 97.5 0.0003 6.5E-09 60.2 6.9 81 31-152 3-84 (161)
89 KOG0370 Multifunctional pyrimi 97.5 7.1E-05 1.5E-09 78.8 3.2 138 38-209 505-650 (1435)
90 TIGR02291 rimK_rel_E_lig alpha 97.5 0.0059 1.3E-07 58.3 15.7 56 28-85 34-89 (317)
91 KOG0368 Acetyl-CoA carboxylase 97.4 0.0018 4E-08 71.0 12.0 134 52-236 225-376 (2196)
92 PLN02941 inositol-tetrakisphos 97.0 0.0034 7.3E-08 60.2 9.2 80 30-140 106-196 (328)
93 COG3919 Predicted ATP-grasp en 96.7 0.0046 1E-07 58.3 7.3 101 36-160 119-222 (415)
94 COG1759 5-formaminoimidazole-4 96.0 0.029 6.3E-07 53.4 8.3 90 33-152 126-216 (361)
95 KOG0370 Multifunctional pyrimi 96.0 0.026 5.7E-07 60.2 8.7 113 36-179 1038-1152(1435)
96 PRK12458 glutathione synthetas 95.9 0.057 1.2E-06 51.9 9.9 77 44-147 139-220 (338)
97 PRK05246 glutathione synthetas 95.5 0.14 2.9E-06 48.5 10.6 77 45-148 134-214 (316)
98 TIGR01380 glut_syn glutathione 95.0 0.18 3.8E-06 47.8 9.8 81 41-148 129-213 (312)
99 PF14397 ATPgrasp_ST: Sugar-tr 94.1 0.22 4.8E-06 46.7 7.9 54 28-85 23-87 (285)
100 PF14398 ATPgrasp_YheCD: YheC/ 91.4 12 0.00025 34.6 18.4 105 28-152 15-142 (262)
101 COG2232 Predicted ATP-dependen 91.3 0.83 1.8E-05 44.0 7.6 31 129-161 176-206 (389)
102 COG1042 Acyl-CoA synthetase (N 91.1 0.015 3.2E-07 60.0 -4.6 212 27-267 21-260 (598)
103 PF02955 GSH-S_ATP: Prokaryoti 90.6 1 2.2E-05 39.4 7.0 66 46-138 12-79 (173)
104 PF10281 Ish1: Putative stress 86.6 1.7 3.6E-05 28.3 4.4 33 30-64 4-36 (38)
105 PF11379 DUF3182: Protein of u 82.2 5.5 0.00012 38.5 7.5 80 46-146 114-193 (355)
106 PF14403 CP_ATPgrasp_2: Circul 78.5 6.7 0.00015 39.3 7.0 84 29-145 297-391 (445)
107 PRK05849 hypothetical protein; 75.8 1.2E+02 0.0027 32.7 19.0 189 31-253 10-216 (783)
108 PF05770 Ins134_P3_kin: Inosit 69.2 5.5 0.00012 38.0 3.7 70 42-142 111-184 (307)
109 PRK06241 phosphoenolpyruvate s 57.1 2.9E+02 0.0064 30.1 15.9 79 70-153 110-199 (871)
110 PF02750 Synapsin_C: Synapsin, 53.7 41 0.00088 30.2 6.1 75 42-145 29-103 (203)
111 PF04174 CP_ATPgrasp_1: A circ 52.7 36 0.00079 32.8 6.1 95 3-114 221-323 (330)
112 TIGR02049 gshA_ferroox glutama 52.5 32 0.00068 33.9 5.6 57 72-144 260-317 (403)
113 PF08886 GshA: Glutamate-cyste 36.4 32 0.0007 33.9 3.0 55 72-142 263-318 (404)
114 PF07805 HipA_N: HipA-like N-t 33.5 36 0.00078 25.3 2.3 30 25-54 39-68 (81)
115 PF14305 ATPgrasp_TupA: TupA-l 32.1 3.4E+02 0.0073 24.7 8.8 92 28-138 17-119 (239)
116 TIGR01418 PEP_synth phosphoeno 30.6 7.2E+02 0.016 26.9 17.5 80 71-154 117-208 (782)
117 PF00730 HhH-GPD: HhH-GPD supe 27.4 14 0.00031 28.7 -0.9 43 22-65 6-48 (108)
118 COG0272 Lig NAD-dependent DNA 26.5 1E+02 0.0022 32.6 4.8 39 27-65 233-272 (667)
119 cd03418 GRX_GRXb_1_3_like Glut 25.7 1.4E+02 0.003 21.0 4.2 34 32-65 13-46 (75)
120 PF13906 AA_permease_C: C-term 25.0 1.4E+02 0.0031 20.7 3.9 26 265-290 11-36 (51)
121 PRK06464 phosphoenolpyruvate s 23.0 9.9E+02 0.021 25.9 17.8 81 70-154 119-211 (795)
122 COG0821 gcpE 1-hydroxy-2-methy 21.2 1.4E+02 0.003 29.2 4.2 120 34-205 135-255 (361)
123 COG4130 Predicted sugar epimer 21.2 1.3E+02 0.0028 27.7 3.9 63 34-99 126-197 (272)
No 1
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=2.1e-49 Score=385.87 Aligned_cols=248 Identities=75% Similarity=1.152 Sum_probs=234.2
Q ss_pred CchhhhhhhhcccccccchhhhhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCC--CCeEEEEEee
Q 022648 1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD--HKELVVKSQI 78 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g--~~PvVlKaq~ 78 (294)
|.+|..+++.+.+..+...+..+|.++|+|+||++|++|++||||+|++.++++++|+.++++++ + .+|+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l--~~~~~pvVvKaqv 78 (422)
T PLN00124 1 MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKM--FPDEGEVVVKSQI 78 (422)
T ss_pred CchhHHHHHHHhhhhhhchhhhhcccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--cccCCcEEEEEEe
Confidence 67889999999988888777667889999999999999999999999999999999999999998 5 4799999999
Q ss_pred ecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceE
Q 022648 79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI 157 (294)
Q Consensus 79 ~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPv 157 (294)
++|||||++|++..+|||+++ + +++.+++++|+++.++++|+++.|..+++++|+|++..+.|+|+|+++||..++|+
T Consensus 79 ~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpv 157 (422)
T PLN00124 79 LAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPL 157 (422)
T ss_pred ccCCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcE
Confidence 999999998877779999999 6 99999999999998889999988999999998888888999999999999778999
Q ss_pred EEecCCCCceeeeccccCCCeEEEEeecCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeecee
Q 022648 158 IIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNF 237 (294)
Q Consensus 158 il~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~ 237 (294)
++++..||++||.+++.+||.+.+++++|..+++++++++++..+++++.+.+++++++.+||++|.++|++++|||||+
T Consensus 158 il~s~~GGv~IEeva~~~pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~ 237 (422)
T PLN00124 158 IIACSKGGTSIEDLAEKFPEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLA 237 (422)
T ss_pred EEEECCCCccHHHhhhhCchheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceE
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcEEEEEEEE
Q 022648 238 YISLVLLICMSLLV 251 (294)
Q Consensus 238 v~~dg~~valDa~i 251 (294)
++++|+++|+||++
T Consensus 238 vt~~G~~valDAKi 251 (422)
T PLN00124 238 ETADGQLVAADAKL 251 (422)
T ss_pred EccCCCEEEEEEEE
Confidence 99999999999998
No 2
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=7e-49 Score=348.99 Aligned_cols=201 Identities=44% Similarity=0.697 Sum_probs=180.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
+||||++|++|++||||+|++.+++|++|+.++++++ +..++|+|||+++||||| .|||+++ |++|+.++
T Consensus 1 ~l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l--~~~~~VvKaQvl~GgRGK-------~GgVk~~~s~~ea~~~ 71 (202)
T PF08442_consen 1 NLHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKEL--GGKPLVVKAQVLAGGRGK-------AGGVKIAKSPEEAKEA 71 (202)
T ss_dssp BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHH--TTSSEEEEE-SSSSTTTT-------TTCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh--CCCcEEEEEeEeecCccc-------CCceeecCCHHHHHHH
Confidence 5899999999999999999999999999999999999 755789999999999999 6999999 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~ 187 (294)
+++|+++.++|+||++.|..++.|+|||++++.+|+|++++.||+.++|++++|+.|||+||.++.++||++.+++++|.
T Consensus 72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~ 151 (202)
T PF08442_consen 72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT 151 (202)
T ss_dssp HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeE
Q 022648 188 NGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFY 238 (294)
Q Consensus 188 ~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v 238 (294)
.|++++++++++..+|+++...+++++++.+||++|.+.|++++|||||.+
T Consensus 152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999864
No 3
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9.1e-47 Score=357.06 Aligned_cols=214 Identities=36% Similarity=0.565 Sum_probs=205.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
|+|||||+|++|++||||+|++.+++|++|+.++++++ |..|+|+|+|+++||||| +|||+++ |++|+.+
T Consensus 1 M~lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~l--g~~~~VvKaQV~aGGRGK-------aGGVk~~~s~~ea~~ 71 (387)
T COG0045 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKEL--GGGPVVVKAQVHAGGRGK-------AGGVKLAKSPEEAKE 71 (387)
T ss_pred CcHHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHh--CCCcEEEEeeeeecCccc-------cCceEEeCCHHHHHH
Confidence 78999999999999999999999999999999999999 657999999999999999 7999999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCC-CeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~-~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
++++|+++. +|+++.|..++.+|||+++++ .+|+|+++..||...+|++++|.+|||+||.+++++||++.+.+++
T Consensus 72 ~a~~~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~id 148 (387)
T COG0045 72 AAEEILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVD 148 (387)
T ss_pred HHHHHhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeC
Confidence 999999985 788999999999999999994 4599999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCC-cEEEEEEEEec
Q 022648 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLV-LLICMSLLVGG 253 (294)
Q Consensus 186 p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg-~~valDa~i~~ 253 (294)
|..|++++++++++..+|+++...+++.+++.+||++|.++|++++|||||.+++|+ .++|+|+++.=
T Consensus 149 p~~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~ 217 (387)
T COG0045 149 PLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITL 217 (387)
T ss_pred CccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeec
Confidence 999999999999999999999999999999999999999999999999999999954 79999999853
No 4
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=2.2e-44 Score=348.89 Aligned_cols=215 Identities=32% Similarity=0.539 Sum_probs=203.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCC-eEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~-PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
|+|+||++|++|++||||+|++.+++|++|+.++++++ | + |+|+|+|++.+|||| .|||+++ |+++++
T Consensus 1 m~l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~l--g-~p~~VvK~qv~~g~Rgk-------~GGV~l~~~~~e~~ 70 (392)
T PRK14046 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRAREL--G-GWHWVVKAQIHSGARGK-------AGGIKLCRTYNEVR 70 (392)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHc--C-CCcEEEEeeeccCCCCc-------CCeEEEECCHHHHH
Confidence 78999999999999999999999999999999999999 8 6 569999998888877 7999999 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
+++++|+++.++++|+++.|..+++|+||+|++++.|+|+|+++||.|+.|++++|..||+++|.++.++||++++++++
T Consensus 71 ~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~ 150 (392)
T PRK14046 71 DAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVE 150 (392)
T ss_pred HHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcC
Confidence 99999999988889999999999999999999999999999999999865555556799999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 186 p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
|..+++++++++++..+|+++...+++.+++.+||++|.++|++++|||||.++.||.++|+|+++.
T Consensus 151 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~ 217 (392)
T PRK14046 151 PAVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMS 217 (392)
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999983
No 5
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=1.5e-41 Score=328.33 Aligned_cols=217 Identities=36% Similarity=0.579 Sum_probs=202.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
|+|+||++|++|++||||+|++.++++.+|+.++++++ |.+|+|+|++++.||||| .|||+++ |++++.+
T Consensus 1 m~L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~i--g~~PvVvK~~~~~ggkg~-------~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKL--GAGPVVVKAQVHAGGRGK-------AGGVKVAKSKEEARA 71 (386)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--CCCcEEEEecccCCCCcc-------CceEEEeCCHHHHHH
Confidence 78999999999999999999999999999999999999 746999999987777777 7999999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p 186 (294)
++++++++.+.++|+++.|..+++++||+|++++.|+|+|+++|+..++|+|++|..||+++|.+++.+|+++.++.++|
T Consensus 72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p 151 (386)
T TIGR01016 72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP 151 (386)
T ss_pred HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCC
Confidence 99999987766777766788889999999999999999999999985699999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEec
Q 022648 187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGG 253 (294)
Q Consensus 187 ~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~~ 253 (294)
..++++++++++...+++++.+.+++.+++.++|++|.+.+++++|||||.++++|.++|+||++.=
T Consensus 152 ~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~ 218 (386)
T TIGR01016 152 LTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTI 218 (386)
T ss_pred CcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEee
Confidence 9999999999999999999999999999999999999999999999999999999779999999843
No 6
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=2.9e-40 Score=319.58 Aligned_cols=215 Identities=36% Similarity=0.572 Sum_probs=196.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
|+|+||++|++|++||||+|++.++++.+|+.++++++ +.||+|+|++.+.+||+| .|||+++ |++++.+
T Consensus 1 m~l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i--~g~PvVvK~~~~~ggk~~-------~GGV~l~~~~~e~~~ 71 (388)
T PRK00696 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEEL--GGGVWVVKAQVHAGGRGK-------AGGVKLAKSPEEARE 71 (388)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHc--CCCcEEEEEeeCCCCCcc-------cccEEEcCCHHHHHH
Confidence 78999999999999999999999999999999999998 338999999977676655 8999999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEE-EecCCCCceeeeccccCCCeEEEEeec
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvi-l~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
++++++++.+.++++++.|..+.+++||+|++++.|+|+|+++||.| ||++ ++|.+||+++|.++|++||.+.+++++
T Consensus 72 a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~f-gpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~ 150 (388)
T PRK00696 72 FAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRAT-RRVVFMASTEGGMDIEEVAEETPEKIHKVAID 150 (388)
T ss_pred HHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCC-CceEEEEeCCCCcchhhhcccCcceeEEEEcC
Confidence 99999987555566666788899999999999999999999999997 5665 577799999999999999998889999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 186 p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
|..+++.+.|++|++.++.++.+.+++++++.+||+++.+.++.++||||++++++|.++|+|+++.
T Consensus 151 p~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ 217 (388)
T PRK00696 151 PLTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKIN 217 (388)
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEe
Confidence 9888999999999999999999999999999999999999999999999999999988999999984
No 7
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.4e-42 Score=319.03 Aligned_cols=240 Identities=45% Similarity=0.678 Sum_probs=229.4
Q ss_pred hhhcccccccchhhhhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcc
Q 022648 8 KLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87 (294)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~ 87 (294)
.|+++|. ||+.||.|+..+|||.+.++|+.||+.+|+++++.|+|||.++++.+ |...+|+|+|.++||||||+
T Consensus 7 ~l~~~s~----q~~~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akkl--g~kdlVikAQ~lAgGRgKGt 80 (434)
T KOG2799|consen 7 SLQSKSG----QSYFQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKL--GSKDLVIKAQVLAGGRGKGT 80 (434)
T ss_pred HHHhhch----hhhhhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHh--CCcceEEEeeecccCcccCC
Confidence 5666655 88888999999999999999999999999999999999999999999 66789999999999999999
Q ss_pred cccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCc
Q 022648 88 FKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGT 166 (294)
Q Consensus 88 ~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv 166 (294)
|.++..|||+++ +|+|+++.+++|+++.+.|+|+|+.|..++.|+|.+......|+|++++.||++.+|+++.+++||+
T Consensus 81 F~SglkgGV~iVf~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~ 160 (434)
T KOG2799|consen 81 FDSGLKGGVKIVFSPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGV 160 (434)
T ss_pred cCcCcCCceEEEeChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCeEEEEeecCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCC-cEE
Q 022648 167 SIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLV-LLI 245 (294)
Q Consensus 167 ~vE~l~~~~pd~v~~~~l~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg-~~v 245 (294)
++|.++..+||.+.+.|++...|++.+.|..++..||+++..++..++.+.+||++|...|++.+|||||..++++ .++
T Consensus 161 ~ie~vae~~pdai~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~ 240 (434)
T KOG2799|consen 161 NIEEVAEDTPDAIIKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVT 240 (434)
T ss_pred cHHHHhhhCccchhcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987755 699
Q ss_pred EEEEEEec
Q 022648 246 CMSLLVGG 253 (294)
Q Consensus 246 alDa~i~~ 253 (294)
|+|+++..
T Consensus 241 c~dak~~f 248 (434)
T KOG2799|consen 241 CMDAKLNF 248 (434)
T ss_pred echhhhcc
Confidence 99999854
No 8
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.5e-39 Score=314.33 Aligned_cols=204 Identities=22% Similarity=0.262 Sum_probs=188.6
Q ss_pred cCCCHHHHHHHHHHc-----CCCCCCeeee-CCHHHHHHHHHH---hCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE
Q 022648 28 LNIHEYQGAELMAKY-----GINVPKGLAV-ASVDEVKKAIQD---AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (294)
Q Consensus 28 ~~L~E~~ak~lL~~y-----GIpvp~~~~a-~s~eEa~~aa~~---l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l 98 (294)
.+|||||+|++|++| |||+|++.++ ++++|+.+++++ + +..++|+|||+++||||| .|||++
T Consensus 4 ~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l--~~~~~VVKaQvl~GgRGK-------aGGVk~ 74 (423)
T PLN02235 4 KKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWL--SSTKLVVKPDMLFGKRGK-------SGLVAL 74 (423)
T ss_pred ccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhh--CCCcEEEEcccccCCCcc-------cCceEE
Confidence 579999999999999 9999999999 999999999988 7 634679999999999999 699999
Q ss_pred c-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCC
Q 022648 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN 177 (294)
Q Consensus 99 ~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd 177 (294)
+ |++|+++++++|+++.++|+ ++.| .+++|||||++++.+|+|++++.||... .+++|.+|||+||. +||
T Consensus 75 ~~s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~--~ii~S~~GGvdIEe----~pe 145 (423)
T PLN02235 75 NLDLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGC--SISFSECGGIEIEE----NWD 145 (423)
T ss_pred eCCHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCCC--EEEEECCCCCcccC----Chh
Confidence 9 99999999999999987654 7778 9999999999999999999999999963 38899999999996 689
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 178 ~v~~~~l~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
++.+++++|..+++++++++++..++. ...+++.+++.+||++|.+.|++++|||||.+ .||.++|+|+++.
T Consensus 146 ~i~k~~Id~~~gl~~~~~~~~~~~l~~--~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~ 217 (423)
T PLN02235 146 KVKTIFLPTEAPLTSEICAPLIATLPL--EIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGE 217 (423)
T ss_pred HeEEEEcCCCCCCCHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEc
Confidence 999999999999999999999998765 67889999999999999999999999999999 8888999999883
No 9
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-39 Score=293.54 Aligned_cols=227 Identities=38% Similarity=0.618 Sum_probs=220.9
Q ss_pred hhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CH
Q 022648 23 QQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (294)
Q Consensus 23 ~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ 101 (294)
-|+|+.+|.|+|+|++|.+||+.+.++.++.+..|+.++++++ +....|+|+|+++||||||+|.++..|||.+- ++
T Consensus 15 ~~rR~LNLqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f--~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k 92 (412)
T KOG1447|consen 15 SQRRFLNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRF--NAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDK 92 (412)
T ss_pred hhhhhccHHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhc--CCcceEEeeeeeecCcccceecCCccceeEEecCH
Confidence 4899999999999999999999999999999999999999999 76678999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEE
Q 022648 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181 (294)
Q Consensus 102 eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~ 181 (294)
.++.+.+++|++..++|+||...|..++.++|.+.++..+|-|+++..||+..|||++.||+||++||.++..+|+++++
T Consensus 93 ~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~Ifk 172 (412)
T KOG1447|consen 93 NVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIFK 172 (412)
T ss_pred hHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEE
Q 022648 182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLV 251 (294)
Q Consensus 182 ~~l~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i 251 (294)
.|++...|+++.++.+|++.|+|.|....+.++-+.+||++|..-|++-+||||+..+++|+++|+||++
T Consensus 173 ~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~ 242 (412)
T KOG1447|consen 173 EPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKI 242 (412)
T ss_pred ccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=1.2e-38 Score=287.15 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=148.4
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc--CH
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KK 101 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~--s~ 101 (294)
+.++..|+|+++|++|+.||||+|++++++|++|+.++++++ | ||+|+|+.++. -.|| ||+|||+++ |+
T Consensus 4 ~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~i--g-~PvvlKi~sp~-i~HK-----sd~GgV~L~l~~~ 74 (222)
T PF13549_consen 4 AEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEI--G-FPVVLKIVSPD-IAHK-----SDVGGVRLNLNSP 74 (222)
T ss_dssp HTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH----SSEEEEEE-TT----H-----HHHT-EEEEE-SH
T ss_pred cCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHh--C-CCEEEEEecCC-CCcC-----CCCCcEEECCCCH
Confidence 346688999999999999999999999999999999999999 9 89999997541 1245 999999999 99
Q ss_pred HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecC-CCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEE
Q 022648 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS-LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (294)
Q Consensus 102 eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~-~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~ 180 (294)
+++++++++|.++.. . .. ++..+++|+||+|++ .+.|+++|+.+||.| ||+|+|| .||+.+|.++| ..
T Consensus 75 ~~v~~a~~~l~~~~~-~--~~-p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~F-GPvv~~G-~GG~~vE~~~D----~~- 143 (222)
T PF13549_consen 75 EEVREAFERLRERVA-A--HH-PGARIDGVLVQEMAPSGGRELIVGVRRDPQF-GPVVMFG-LGGIFVELLKD----VA- 143 (222)
T ss_dssp HHHHHHHHHHHHHHH-H--H--TT----EEEEEE------EEEEEEEEEETTT-EEEEEEE-E-STTHHHH-------E-
T ss_pred HHHHHHHHHHHHHHH-H--hC-CCCccceEEEEEcccCCcEEEEEEEEECCCC-CCEEEEc-CCCceeeeecc----eE-
Confidence 999999999988742 1 11 355678999999998 899999999999986 9999999 99999999986 34
Q ss_pred EEeecCCCCCCHHHHHHHHHhC-------CC---CcccHHHHHHHHHHHHHhhccC-CCcEEEeeceeEecCCcEEEEEE
Q 022648 181 KVPIDVFNGITDEDAAKVVDGL-------AP---KVADRNDAIEQVKKLYKLFCES-DCTLLEVSMNFYISLVLLICMSL 249 (294)
Q Consensus 181 ~~~l~p~~gl~~~~a~~~~~~l-------g~---~~~~~~~l~~~l~~L~~l~~~~-d~~~LEINPL~v~~dg~~valDa 249 (294)
+.++| ++.++|++|++++ |+ ++.|++++++++.+++++..+. ++.++||||++++++| ++++||
T Consensus 144 -~~l~P---l~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g-~~avDa 218 (222)
T PF13549_consen 144 -FRLPP---LSEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDG-AVAVDA 218 (222)
T ss_dssp -EEESS-----HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS--EEE--E
T ss_pred -EeeCC---CCHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCc-eEEEEE
Confidence 56888 9999999999977 34 4469999999999999999884 7889999999999999 999999
Q ss_pred EEe
Q 022648 250 LVG 252 (294)
Q Consensus 250 ~i~ 252 (294)
++.
T Consensus 219 ~i~ 221 (222)
T PF13549_consen 219 RIR 221 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 11
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.45 E-value=1.1e-12 Score=116.14 Aligned_cols=107 Identities=25% Similarity=0.283 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeE-EEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL-VVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~Pv-VlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
+...+|++|++||||++++..+++.++|.++.++. + .|. |||++.+++ || ||.+. |.+++.++.
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~--~-~p~~ViKadGla~--GK---------GV~i~~~~~eA~~~l 67 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQ--G-YPYVVIKADGLAA--GK---------GVVIADDREEALEAL 67 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHH--S-SSEEEEEESSSCT--TT---------SEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhc--C-CCceEEccCCCCC--CC---------EEEEeCCHHHHHHHH
Confidence 35689999999999999999999999999999999 7 788 999998876 57 89999 999999999
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEE
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII 159 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil 159 (294)
++++... ..|..-++|+|||++. |.|+.+-+..|...+-|+..
T Consensus 68 ~~~~~~~-------~fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~ 110 (194)
T PF01071_consen 68 REIFVDR-------KFGDAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPP 110 (194)
T ss_dssp HHHHTSS-------TTCCCGSSEEEEE----SEEEEEEEEEESSEEEEEEE
T ss_pred HHhcccc-------ccCCCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcc
Confidence 9998642 1344447899999998 89999999999886555543
No 12
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.40 E-value=5.7e-12 Score=117.41 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=81.0
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 26 ~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
-+...++...|++|+++|||+|++..+++.+++..+++++ + +|+|+||. .++.|+ ||... +.+++
T Consensus 93 ~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~--~-~P~ivKP~--~g~~s~---------Gv~~v~~~~el 158 (304)
T PRK01372 93 SALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKL--G-LPLVVKPA--REGSSV---------GVSKVKEEDEL 158 (304)
T ss_pred HHHHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhc--C-CCEEEeeC--CCCCCC---------CEEEeCCHHHH
Confidence 3345688899999999999999999999999988899999 8 89999997 344345 77778 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.+++++.... + ..++||+|++ |.|+.+.+..|..
T Consensus 159 ~~~~~~~~~~----------~---~~~lvEe~i~-G~E~~v~vi~~~~ 192 (304)
T PRK01372 159 QAALELAFKY----------D---DEVLVEKYIK-GRELTVAVLGGKA 192 (304)
T ss_pred HHHHHHHHhc----------C---CcEEEEcccC-CEEEEEEEECCCc
Confidence 9887765321 1 4699999998 7999999987754
No 13
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.39 E-value=4.8e-12 Score=113.58 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCCCCCeeee--CCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 32 EYQGAELMAKYGINVPKGLAV--ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 32 E~~ak~lL~~yGIpvp~~~~a--~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
...+++++++.|+|+|++... ++.+|+.++++++ | ||+++||. .||.|+ |.++. |.+++.+++
T Consensus 2 k~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~i--G-yPVliKas--~ggGG~---------gm~iv~~~~eL~~~~ 67 (211)
T PF02786_consen 2 KIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEI--G-YPVLIKAS--AGGGGR---------GMRIVHNEEELEEAF 67 (211)
T ss_dssp HHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH----SSEEEEET--TSSTTT---------SEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhc--C-CceEEeec--cccccc---------ccccccchhhhhhhh
Confidence 457899999999999999988 9999999999999 9 89999997 666677 88899 999999998
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFN 188 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~~ 188 (294)
++....... . .| ...++||+++...+|+-+-+.+|+. |-++.++ +.+ ...+.++.|. +.+.|..
T Consensus 68 ~~~~~~s~~--~---fg--~~~v~iek~i~~~reiEvqvi~D~~--gn~~~~~---~~e-~~~~~hs~ds---i~~~P~~ 131 (211)
T PF02786_consen 68 ERAQRESPA--A---FG--DGPVLIEKFIEGAREIEVQVIRDGK--GNVVHLG---ERE-CSEQRHSQDS---IEEAPAQ 131 (211)
T ss_dssp HHHHHHHHH--H---HS--TS-EEEEE--SSEEEEEEEEEEETT--SEEEEEE---EEE-EEEEETTEEE---EEEES-S
T ss_pred hhccccCcc--c---cc--cceEEEeeehhhhhhhhhhhhhccc--cceeeee---eec-cccccccccc---eeEeecc
Confidence 876544210 0 11 2679999999988999999999987 4444433 222 2222244444 4566666
Q ss_pred CCCHHHHHH
Q 022648 189 GITDEDAAK 197 (294)
Q Consensus 189 gl~~~~a~~ 197 (294)
.++++.-++
T Consensus 132 ~L~~~~~~~ 140 (211)
T PF02786_consen 132 TLSDEERQK 140 (211)
T ss_dssp SS-HHHHHH
T ss_pred ccchHHHHH
Confidence 677754333
No 14
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.35 E-value=2.4e-12 Score=114.75 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=105.7
Q ss_pred HHHHcCCCCCCeeeeCCHHHH----HHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHh
Q 022648 38 LMAKYGINVPKGLAVASVDEV----KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (294)
Q Consensus 38 lL~~yGIpvp~~~~a~s~eEa----~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l 112 (294)
+|+++|||||++.++...+.. .+....+ + +|++|||. .+|... ||..+ |.+++.++.++..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l--~-~P~~VKP~--~~GsS~---------Gi~~v~~~~el~~ai~~~~ 66 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDL--G-FPLFVKPA--SEGSSI---------GISKVHNEEELEEAIEKAF 66 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHH--S-SSEEEEES--STSTTT---------TEEEESSHHHHHHHHHHHT
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhc--C-CCEEEEEC--CCCccE---------EEEEcCCHHHHHHHHHHHh
Confidence 688999999999999765443 3557788 8 89999997 555555 78888 9999999988865
Q ss_pred hchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCCCCCCH
Q 022648 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 192 (294)
Q Consensus 113 ~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~ 192 (294)
.. -+.++|||+++ |+|+.+|+..+.. +.+ .. . +|... ..++.+
T Consensus 67 ~~-------------~~~vlVEefI~-G~E~tv~vl~~~~---~~~-~~-~----~ei~~--------------~~~~~d 109 (203)
T PF07478_consen 67 KY-------------DDDVLVEEFIS-GREFTVGVLGNGE---PRV-LP-P----VEIVF--------------PSEFYD 109 (203)
T ss_dssp TT-------------HSEEEEEE--S-SEEEEEEEEESSS---TEE-EE-E----EEEEE--------------SSSEEE
T ss_pred hh-------------cceEEEEeeec-ccceEEEEEecCC---ccc-Cc-e----EEEEc--------------CCCcee
Confidence 32 15799999996 9999999998655 111 11 0 11110 001222
Q ss_pred HHHHHHH--H------hCCCCcccHHHHHHHHHHHHHhhc-----------c--CCCcEEEeeceeEecCCcEEEEEEEE
Q 022648 193 EDAAKVV--D------GLAPKVADRNDAIEQVKKLYKLFC-----------E--SDCTLLEVSMNFYISLVLLICMSLLV 251 (294)
Q Consensus 193 ~~a~~~~--~------~lg~~~~~~~~l~~~l~~L~~l~~-----------~--~d~~~LEINPL~v~~dg~~valDa~i 251 (294)
++++... . ...++....+++.++..++++.+. + .+..++||||+...+.++.++..++.
T Consensus 110 ~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~ 189 (203)
T PF07478_consen 110 YEAKYQPADSETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEA 189 (203)
T ss_dssp HHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHH
T ss_pred hhheeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHH
Confidence 2333321 0 002334455666666666666643 2 24567999998876655444444555
Q ss_pred ech--hhHHHHHhh
Q 022648 252 GGQ--VELVIHLVG 263 (294)
Q Consensus 252 ~~~--~~~~~~~~~ 263 (294)
.|. .+++.+|++
T Consensus 190 ~G~sy~~li~~iie 203 (203)
T PF07478_consen 190 AGISYEDLIERIIE 203 (203)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHhC
Confidence 554 777777764
No 15
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.35 E-value=5.5e-11 Score=117.25 Aligned_cols=109 Identities=27% Similarity=0.243 Sum_probs=87.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-++..+|++|+++|||+|++..+++.+|+.++++++ + +|+|+||. .++.|| ||.+. |.+|+.+
T Consensus 99 l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~--g-~PvVVKp~--~~~~Gk---------GV~iv~~~~el~~ 164 (434)
T PLN02257 99 LEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQ--G-APIVVKAD--GLAAGK---------GVVVAMTLEEAYE 164 (434)
T ss_pred HHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHc--C-CCEEEEcC--CCCCCC---------CEEEECCHHHHHH
Confidence 44578999999999999999999999999999999999 8 89999998 334567 89999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEE
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII 158 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvi 158 (294)
++++++.... .|..-..++|||+++ +.|+.+.+..|....-|++
T Consensus 165 a~~~~~~~~~-------fg~~~~~vlIEefi~-G~E~Sv~~~~dG~~~~pl~ 208 (434)
T PLN02257 165 AVDSMLVKGA-------FGSAGSEVVVEEFLD-GEEASFFALVDGENAIPLE 208 (434)
T ss_pred HHHHHHhhhh-------ccCCCCeEEEEECCC-CCEEEEEEEECCCcEEEEE
Confidence 9988764311 122235799999999 5699998888865444554
No 16
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.33 E-value=8.8e-12 Score=120.59 Aligned_cols=133 Identities=27% Similarity=0.332 Sum_probs=107.7
Q ss_pred chhhhhhhhcccccccchhhhhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecC
Q 022648 2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAG 81 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~g 81 (294)
+-|+.+.+-.+-+.+.+--. .--+.--++..+|+||++||||++.+..+++++||.++.++. | .|+||||+.+++
T Consensus 76 ~~GvvD~l~~~Gi~vFGPsk--~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~--g-~piVVKadGLaa 150 (428)
T COG0151 76 VAGVVDALRAAGIPVFGPTK--AAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEK--G-APIVVKADGLAA 150 (428)
T ss_pred hhhhHHHHHHCCCceeCcCH--HHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHc--C-CCEEEecccccC
Confidence 45777778788787776442 112233468899999999999999999999999999999999 8 799999999887
Q ss_pred CCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEE
Q 022648 82 GRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII 158 (294)
Q Consensus 82 grgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvi 158 (294)
|| ||.+. +.|++.+++++|+.... .|.....|+|||+++ |.|+.+-...|....-|+.
T Consensus 151 --GK---------GV~V~~~~eeA~~a~~~~l~~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~v~p~p 209 (428)
T COG0151 151 --GK---------GVIVAMTLEEAEAAVDEMLEGNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKTVIPMP 209 (428)
T ss_pred --CC---------CeEEcCCHHHHHHHHHHHHhhcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCeEEECc
Confidence 68 99999 99999999999986531 232225799999999 8999999999988655544
No 17
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.33 E-value=1.8e-11 Score=116.46 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=76.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eE----a~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
...++..+|++|+++|||+|++..+.+.++ ...+.+.+ + +|+|+||. .+|.++ ||.++ +.+
T Consensus 120 l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~--~-~P~vVKP~--~~gsS~---------Gv~~v~~~~ 185 (333)
T PRK01966 120 LSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKL--G-LPVFVKPA--NLGSSV---------GISKVKNEE 185 (333)
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhc--C-CCEEEEeC--CCCCcc---------CEEEECCHH
Confidence 456889999999999999999998876654 24556678 8 89999996 444455 88888 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
++.+++++.... + +.++||++++ |.|+.+++..|
T Consensus 186 el~~a~~~~~~~----------~---~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 186 ELAAALDLAFEY----------D---RKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHHHHHhc----------C---CcEEEEcCcC-CEEEEEEEECC
Confidence 999998876532 1 4799999999 79999999986
No 18
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.33 E-value=1.3e-11 Score=118.06 Aligned_cols=200 Identities=18% Similarity=0.176 Sum_probs=118.6
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeC------CHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEE
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVH 97 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~------s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~ 97 (294)
+.-++..++..+|++|+++|||+|++..++ +.+++.+..+.+ + +|+|+||. .+|.++ ||.
T Consensus 123 ~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l--~-~PvvVKP~--~ggsS~---------GV~ 188 (347)
T PRK14572 123 LASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESL--G-FPQFLKPV--EGGSSV---------STY 188 (347)
T ss_pred HHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhc--C-CCEEEecC--CCCCCC---------CEE
Confidence 334456788999999999999999998874 344444555678 8 89999996 455456 888
Q ss_pred Ec-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCC--ceEEE----ecCCCCceeee
Q 022648 98 IV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA--GPIII----GCSKGGTSIED 170 (294)
Q Consensus 98 l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~--gPvil----~s~~GGv~vE~ 170 (294)
+. |.+++.++.+.++... +.++||||++ |+|+.+++..+...+ .|+.+ ..+.|+. . .
T Consensus 189 ~v~~~~el~~a~~~~~~~~-------------~~vlVEefI~-G~E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~-~-d 252 (347)
T PRK14572 189 KITNAEQLMTLLALIFESD-------------SKVMSQSFLS-GTEVSCGVLERYRGGKRNPIALPATEIVPGGEF-F-D 252 (347)
T ss_pred EECCHHHHHHHHHHHHhcC-------------CCEEEEcCcc-cEEEEEEEEeCccCCCCCceecccEEEecCCCc-c-C
Confidence 88 9999999888765321 4689999998 799999998642211 12111 1111211 0 0
Q ss_pred ccccC-CCeEEEEeecCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhc-cCCCcEEEeeceeEecC
Q 022648 171 LAEKY-PNMIVKVPIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFC-ESDCTLLEVSMNFYISL 241 (294)
Q Consensus 171 l~~~~-pd~v~~~~l~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~-~~d~~~LEINPL~v~~d 241 (294)
...++ +.... .+.|. .++++ .|.++.+.||.+|-.. .+++. +.+..++||||+...+.
T Consensus 253 ~~~ky~~~~~~--~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~r----------vD~~~~~~~~~vlEiNt~PG~t~ 319 (347)
T PRK14572 253 FESKYKQGGSE--EITPA-RISDQEMKRVQELAIRAHESLGCKGYSR----------TDFIIVDGEPHILETNTLPGMTE 319 (347)
T ss_pred HHHccCCCCeE--EEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeE----------EEEEEECCcEEEEeeeCCCCCCc
Confidence 11111 01111 11111 13332 2344444555543211 12233 33467899999876444
Q ss_pred CcEEEEEEEEech--hhHHHHHhhhhH
Q 022648 242 VLLICMSLLVGGQ--VELVIHLVGGSL 266 (294)
Q Consensus 242 g~~valDa~i~~~--~~~~~~~~~~~~ 266 (294)
.+.+..-++..|. .+++..|++.++
T Consensus 320 ~S~~p~~~~~~G~~~~~l~~~ii~~a~ 346 (347)
T PRK14572 320 TSLIPQQAKAAGINMEEVFTDLIEIGL 346 (347)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3333333444454 999999998764
No 19
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.32 E-value=6.6e-11 Score=114.16 Aligned_cols=184 Identities=18% Similarity=0.213 Sum_probs=124.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea 104 (294)
+..-+.+..|++|+++|||+|++..+++.+++.++++++ | +|+|+||. .+| .|| |+.+. |.+++
T Consensus 96 ~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~--g-~P~vlKp~--~~g~~g~---------Gv~~v~~~~el 161 (372)
T PRK06019 96 AIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADL--G-LPAVLKTR--RGGYDGK---------GQWVIRSAEDL 161 (372)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHc--C-CcEEEEeC--CCCcCCC---------CeEEECCHHHH
Confidence 345678889999999999999999999999999999999 8 89999996 433 467 78888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.++++.+. . ..++||++++++.|+.+.+.+|.+ |-+..+. . +|.... +.++...+
T Consensus 162 ~~a~~~~~-~--------------~~~ivEe~I~~~~E~sv~~~~~~~--G~~~~~p-~----~e~~~~---~gi~~~~~ 216 (372)
T PRK06019 162 EAAWALLG-S--------------VPCILEEFVPFEREVSVIVARGRD--GEVVFYP-L----VENVHR---NGILRTSI 216 (372)
T ss_pred HHHHHhcC-C--------------CCEEEEecCCCCeEEEEEEEECCC--CCEEEeC-C----cccEEe---CCEEEEEE
Confidence 88877641 1 468999999988999999888865 3333333 1 122211 22333334
Q ss_pred cCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEecCCcEEEEEEEEechh
Q 022648 185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYISLVLLICMSLLVGGQV 255 (294)
Q Consensus 185 ~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~dg~~valDa~i~~~~ 255 (294)
.|. .++.+ .+.++++.+|+.|.-- .++|.+. +..++||||-+.+ +| .+..++.-.+|+
T Consensus 217 ~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~----------vEff~~~dg~~~v~EinpR~~~-sg-~~t~~~~~~sqf 283 (372)
T PRK06019 217 APA-RISAELQAQAEEIASRIAEELDYVGVLA----------VEFFVTGDGELLVNEIAPRPHN-SG-HWTIEACSTSQF 283 (372)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHcCccceeE----------EEEEEcCCCeEEEEEecCCccC-cc-cEEhhhcCccHH
Confidence 443 24432 2444455666544210 1345442 3667999997654 34 566777778887
Q ss_pred hHHHHHh
Q 022648 256 ELVIHLV 262 (294)
Q Consensus 256 ~~~~~~~ 262 (294)
|.-.+.+
T Consensus 284 ~~~ira~ 290 (372)
T PRK06019 284 EQHLRAI 290 (372)
T ss_pred HHHHHHH
Confidence 7766653
No 20
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.32 E-value=5.7e-11 Score=116.90 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=85.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-++..+|++|+++|||+|++..+++.+|+.++++++ + +|+|+||... +.|| ||.+. |.+|+.+
T Consensus 105 le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~--~-~PvVVKp~~~--~~gk---------GV~vv~~~eel~~ 170 (426)
T PRK13789 105 VEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESE--M-LPIVIKADGL--AAGK---------GVTVATEKKMAKR 170 (426)
T ss_pred HHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhc--C-CCEEEEeCCC--CCCC---------cEEEECCHHHHHH
Confidence 34579999999999999999999999999999999999 8 8999999844 3467 89999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++++... . .|..-..++|||+++ +.|+.+.+..|..
T Consensus 171 a~~~~~~~~----~---~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 171 ALKEIFKDK----K---FGQSGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred HHHHHHhhc----c---ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence 999886431 0 122224799999999 5899999988865
No 21
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.31 E-value=2.4e-11 Score=113.75 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=113.8
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 26 ~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
-+...++..+|++|+++|||+|++..+++.. ...+.+ + +|+|+||. .+|.++ ||.+. |.+++
T Consensus 93 ~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~--~-~P~vVKP~--~ggss~---------Gv~~v~~~~eL 155 (296)
T PRK14569 93 SVITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEI--S-FPVAVKPS--SGGSSI---------ATFKVKSIQEL 155 (296)
T ss_pred HHHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhc--C-CCEEEEeC--CCCCCc---------CeEEcCCHHHH
Confidence 3455788999999999999999998876432 234667 7 89999996 555566 78888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.++.++.... +.++||++++ |+|+.+++..|... +.+.+.+.... .+.......+.....|-
T Consensus 156 ~~a~~~~~~~--------------~~~lvEefI~-G~E~tv~vl~~~~~--~~~~i~~~~~~-~~~~~k~~~~~~~~~P~ 217 (296)
T PRK14569 156 KHAYEEASKY--------------GEVMIEQWVT-GKEITVAIVNDEVY--SSVWIEPQNEF-YDYESKYSGKSIYHSPS 217 (296)
T ss_pred HHHHHHHHhc--------------CCEEEEcccc-cEEEEEEEECCcCc--ceEEEecCCCc-CChhhccCCCcEEEeCC
Confidence 9887764211 3589999998 79999999876542 22222222211 11000001112211121
Q ss_pred cCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeeceeEecCCcEEEEEEEEech-
Q 022648 185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNFYISLVLLICMSLLVGGQ- 254 (294)
Q Consensus 185 ~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~v~~dg~~valDa~i~~~- 254 (294)
. +.++ .|.++.+.+|.++-.. .+++.+ .+..++||||....+..+..+.-+...|.
T Consensus 218 ~----l~~~~~~~i~~~a~~~~~~Lg~~G~~r----------vD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~ 283 (296)
T PRK14569 218 G----LCEQKELEVRQLAKKAYDLLGCSGHAR----------VDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVD 283 (296)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhCCceEEE----------EEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHHcCCC
Confidence 1 2221 1333344555443211 122333 24678999998764433344444444454
Q ss_pred -hhHHHHHhhhh
Q 022648 255 -VELVIHLVGGS 265 (294)
Q Consensus 255 -~~~~~~~~~~~ 265 (294)
.+++..|++.+
T Consensus 284 ~~~li~~ii~~a 295 (296)
T PRK14569 284 FDSFVKRIIEQA 295 (296)
T ss_pred HHHHHHHHHHhc
Confidence 88888887654
No 22
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.30 E-value=1.5e-10 Score=110.47 Aligned_cols=182 Identities=15% Similarity=0.197 Sum_probs=119.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
..-++...|++|+++|||+|++..+++.+++.++++++ + +|+|+||. .+| .|| ||.+. |.+++.
T Consensus 95 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~~g~~g~---------Gv~~v~~~~el~ 160 (352)
T TIGR01161 95 IIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQEL--G-FPVVLKAR--TGGYDGR---------GQYRIRNEADLP 160 (352)
T ss_pred HhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHc--C-CCEEEEeC--CCCCCCC---------CEEEECCHHHHH
Confidence 44578889999999999999999999999999999999 8 89999997 443 456 88888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
++++++.. ..++||||++++.|+.+.+.++.. |-+..+. . +|.... +......+.
T Consensus 161 ~a~~~~~~---------------~~~lvEe~I~~~~E~sv~~~~~~~--G~~~~~~-~----~~~~~~---~g~~~~~~~ 215 (352)
T TIGR01161 161 QAAKELGD---------------RECIVEEFVPFERELSVIVARSAD--GETAFYP-V----VENIHQ---DGILRYVVA 215 (352)
T ss_pred HHHHhcCC---------------CcEEEEecCCCCeEEEEEEEEcCC--CCEEEEC-C----cccEEe---CCEEEEEEC
Confidence 88776421 268999999988999888887754 3333332 1 111111 122222233
Q ss_pred CCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEecCCcEEEEEEEEechhh
Q 022648 186 VFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYISLVLLICMSLLVGGQVE 256 (294)
Q Consensus 186 p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~dg~~valDa~i~~~~~ 256 (294)
|. .++.+ .++++++.+|+.|..- .+++.+. +..++||||-+.++ | .+..++.-.+|+|
T Consensus 216 p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~----------ve~~~~~dg~~~v~EinpR~~~s-g-~~~~~~~~~s~f~ 282 (352)
T TIGR01161 216 PA-AVPDAIQARAEEIARRLMEELGYVGVLA----------VEMFVLPDGRLLINELAPRVHNS-G-HYTLDGCSTSQFE 282 (352)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCceeEEE----------EEEEEeCCCcEEEEEecCCCCCc-C-cCchhhccccHHH
Confidence 32 13322 2344455555544211 1334333 25678999976543 3 4566777788876
Q ss_pred HHHHH
Q 022648 257 LVIHL 261 (294)
Q Consensus 257 ~~~~~ 261 (294)
...+.
T Consensus 283 ~~~ra 287 (352)
T TIGR01161 283 QHLRA 287 (352)
T ss_pred HHHHH
Confidence 65544
No 23
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.30 E-value=6.3e-11 Score=128.17 Aligned_cols=168 Identities=20% Similarity=0.215 Sum_probs=115.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-+....|++|+++|||+|++..+++.+|+.++++++ | ||+|+||.. +..|+ |+.+. |++|+.+
T Consensus 125 ~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~i--g-yPvVVKP~~--g~gG~---------Gv~iv~~~eEL~~ 190 (1068)
T PRK12815 125 KGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKI--G-FPIIVRPAY--TLGGT---------GGGIAENLEELEQ 190 (1068)
T ss_pred HhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHc--C-CCEEEEECc--CCCCC---------ceEEECCHHHHHH
Confidence 44567778999999999999999999999999999999 8 899999973 33356 66677 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p 186 (294)
++++.++.. ....++||+++++.+|+.+.+.+|... ..++++. .. +++...-.++|.+ .+.|
T Consensus 191 a~~~~~~~s-----------~~~~vLVEe~I~G~~E~sv~v~rD~~g-~~~~~~~-~e--~~~p~gi~tG~s~---~v~P 252 (1068)
T PRK12815 191 LFKQGLQAS-----------PIHQCLLEESIAGWKEIEYEVMRDRNG-NCITVCN-ME--NIDPVGIHTGDSI---VVAP 252 (1068)
T ss_pred HHHHHHhcC-----------CCCeEEEEEccCCCeEEEEEEEEcCCC-CEEEEEe-ce--ecccccccCCceE---EEec
Confidence 988776431 125799999999879999999999863 2333332 11 1222111223333 3445
Q ss_pred CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC---CCcEEEeecee
Q 022648 187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES---DCTLLEVSMNF 237 (294)
Q Consensus 187 ~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~---d~~~LEINPL~ 237 (294)
.+.++.+ .+.++++.+|+.|... .+++.+. +..++||||=+
T Consensus 253 a~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~----------vef~l~~~~g~~~ViEINPR~ 303 (1068)
T PRK12815 253 SQTLTDDEYQMLRSASLKIISALGVVGGCN----------IQFALDPKSKQYYLIEVNPRV 303 (1068)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEECCCCcEEEEEEecCc
Confidence 4446654 4566677777765422 1344432 36689999965
No 24
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.28 E-value=2.7e-11 Score=115.62 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=74.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
...++...|++|+++|||+|++..+++.++.. .+.+ + +|+|+||. .+|.++ ||.++ |.+++.+
T Consensus 129 i~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l--~-~P~iVKP~--~~gsS~---------Gv~~v~~~~eL~~ 192 (343)
T PRK14568 129 LCMDKSLAYIVAKNAGIATPAFWTVTADERPD--AATL--T-YPVFVKPA--RSGSSF---------GVSKVNSADELDY 192 (343)
T ss_pred HHhCHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhc--C-CCEEEEeC--CCCCCC---------CEEEeCCHHHHHH
Confidence 34678899999999999999999987765432 3567 7 89999996 445456 88888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.+..... + ..++||++++ |.|+.+++..|+.
T Consensus 193 a~~~a~~~----------~---~~vlVEe~I~-G~E~sv~vl~~~~ 224 (343)
T PRK14568 193 AIESARQY----------D---SKVLIEEAVV-GSEVGCAVLGNGA 224 (343)
T ss_pred HHHHHHhc----------C---CcEEEECCcC-CEEEEEEEEcCCC
Confidence 88765422 1 4699999998 7899999987653
No 25
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.27 E-value=3.7e-10 Score=115.08 Aligned_cols=185 Identities=19% Similarity=0.152 Sum_probs=121.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
+.-+++..|++|+++|||+|++..+++.+++.++++++ | ||+|+||. .+| .|+ |+.+. |.+++.
T Consensus 118 i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~i--g-~P~VvKP~--~ggs~g~---------Gv~~v~~~~eL~ 183 (577)
T PLN02948 118 IIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLF--G-YPLMLKSR--RLAYDGR---------GNAVAKTEEDLS 183 (577)
T ss_pred HhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhc--C-CcEEEEeC--CCCCCCC---------CeEEECCHHHHH
Confidence 34488999999999999999999999999999999999 8 89999996 444 466 77777 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
++++.+... + ..++||+|+++..|+.+.+.+|.. |.+..+. . +|.... +.+......
T Consensus 184 ~a~~~~~~~----------~---~~vlvEefI~~~~EisV~v~r~~~--G~i~~~p-~----~E~~~~---~~~~~~~~~ 240 (577)
T PLN02948 184 SAVAALGGF----------E---RGLYAEKWAPFVKELAVMVARSRD--GSTRCYP-V----VETIHK---DNICHVVEA 240 (577)
T ss_pred HHHHHhhCC----------C---CcEEEEecCCCCeEEEEEEEECCC--CCEEEec-C----cccEEE---CCeeEEEEE
Confidence 888775321 1 368999999988999999998865 3333322 1 333221 122222233
Q ss_pred CCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEecCCcEEEEEEEEechhh
Q 022648 186 VFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYISLVLLICMSLLVGGQVE 256 (294)
Q Consensus 186 p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~dg~~valDa~i~~~~~ 256 (294)
|. .++++. |.++++.|+..|... .++|... +..++||||....+ | .+..++.-.+|+|
T Consensus 241 Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~----------vEffv~~dG~v~v~EInpRpg~s-G-h~t~ea~~~s~fe 307 (577)
T PLN02948 241 PA-NVPWKVAKLATDVAEKAVGSLEGAGVFG----------VELFLLKDGQILLNEVAPRPHNS-G-HYTIEACYTSQFE 307 (577)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHhCCCeEEE----------EEEEEcCCCcEEEEEEeCCCCCC-C-ceeeecccCCHHH
Confidence 32 244432 223333444333100 1234433 34669999987543 4 3556766677877
Q ss_pred HHHHHh
Q 022648 257 LVIHLV 262 (294)
Q Consensus 257 ~~~~~~ 262 (294)
.-.+.+
T Consensus 308 ~~vRa~ 313 (577)
T PLN02948 308 QHLRAV 313 (577)
T ss_pred HHHHHH
Confidence 766655
No 26
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.26 E-value=9.7e-11 Score=113.07 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=116.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeC------CHHHHHHH-HHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKA-IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~------s~eEa~~a-a~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~- 99 (294)
...++..+|++|+++|||||++..++ +.+++.+. .+.+ | +|+++||. .+|.+. ||.++
T Consensus 126 l~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~l--g-~PviVKP~--~~GsS~---------Gv~~v~ 191 (364)
T PRK14570 126 ISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVL--G-YPVIVKPA--VLGSSI---------GINVAY 191 (364)
T ss_pred HHHCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhc--C-CCEEEEeC--CCCCCC---------cEEEeC
Confidence 44678999999999999999987664 34555443 4568 8 89999996 444455 78888
Q ss_pred CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCC-ceEEEecCCCCceeeeccccC---
Q 022648 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA-GPIIIGCSKGGTSIEDLAEKY--- 175 (294)
Q Consensus 100 s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~-gPvil~s~~GGv~vE~l~~~~--- 175 (294)
|.+++.++.+..+.. + ..++||+++. ++|+.+++..|.... .|+.-+-..++... .+..++
T Consensus 192 ~~~el~~al~~a~~~----------~---~~vlVEefI~-GrEi~v~Vlg~~~~~v~~~~Ei~~~~~~f~-dy~~Ky~~~ 256 (364)
T PRK14570 192 NENQIEKCIEEAFKY----------D---LTVVIEKFIE-AREIECSVIGNEQIKIFTPGEIVVQDFIFY-DYDAKYSTI 256 (364)
T ss_pred CHHHHHHHHHHHHhC----------C---CCEEEECCcC-CEEEEEEEECCCCceEeeeEEEEeCCCCcc-CHHHhcCCC
Confidence 999999998876532 1 4689999998 899999998664310 01110000110000 000111
Q ss_pred CCeEEEEeecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc---CCCcEEEeeceeEecCCcEE
Q 022648 176 PNMIVKVPIDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEVSMNFYISLVLLI 245 (294)
Q Consensus 176 pd~v~~~~l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~---~d~~~LEINPL~v~~dg~~v 245 (294)
+.......+ |. .++++. |.++.+.+|.++..+ .+++.+ .+..++||||+...+..+.+
T Consensus 257 ~~~~~~~~~-Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~R----------vDf~l~~~~g~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 257 PGNSIVFNI-PA-HLDTKHLLDIKEYAFLTYKNLELRGMAR----------IDFLIEKDTGLIYLNEINTIPGFTDISMF 324 (364)
T ss_pred CCCceEEEC-CC-CCCHHHHHHHHHHHHHHHHHhCCcceEE----------EEEEEECCCCcEEEEEeeCCCCCCcccHH
Confidence 111111111 21 144322 223334445444211 122333 24678999998774443344
Q ss_pred EEEEEEech--hhHHHHHhhhhH
Q 022648 246 CMSLLVGGQ--VELVIHLVGGSL 266 (294)
Q Consensus 246 alDa~i~~~--~~~~~~~~~~~~ 266 (294)
+.-+...|. .|++.+|++.++
T Consensus 325 p~~~~~~G~~~~~li~~li~~a~ 347 (364)
T PRK14570 325 AKMCEHDGLQYKSLVDNLIDLAF 347 (364)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 444555564 999999998775
No 27
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.26 E-value=4.6e-12 Score=128.84 Aligned_cols=126 Identities=23% Similarity=0.334 Sum_probs=107.8
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 26 ~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
+...+.++++++++.+|||++|++ ++.+.+|+..+++.+ + |..++.- .|| |++|||.++ +..++
T Consensus 467 ~~~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~--~------Kl~s~~i-~hk-----sev~gv~l~~~~~~v 531 (598)
T COG1042 467 GGTTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESI--G------KLRSPDI-DHK-----SEVGGVMLNRTADAV 531 (598)
T ss_pred CccccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHh--h------hccCCcc-chh-----hhccceeecCcHHHH
Confidence 446688999999999999999999 999999999999988 4 6543321 145 999999999 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
++++..+..+ + .++.+++||+|.. .|+++++.+|+.| ||++++| .||+.+|.++| .+ +.+
T Consensus 532 ~~a~~~~~~~---------p-a~i~g~lvq~m~~--~E~~vgv~~dp~f-gp~i~~G-~Gg~~ve~l~d----~~--~~~ 591 (598)
T COG1042 532 EKAADDILAR---------P-ARIAGVLVQTMAK--LELIVGVKNDPTF-GPLILFG-EGGIEVEVLKD----VV--VAL 591 (598)
T ss_pred HHHHHhHhcc---------c-chhhhhhhHhhhh--ccceeeccCCCcc-hhHHHhc-CCceEEEeecc----ee--ecc
Confidence 9999998765 3 5679999999998 9999999999996 8999999 99999999986 33 456
Q ss_pred cC
Q 022648 185 DV 186 (294)
Q Consensus 185 ~p 186 (294)
+|
T Consensus 592 ~P 593 (598)
T COG1042 592 PP 593 (598)
T ss_pred CC
Confidence 66
No 28
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.25 E-value=1.2e-10 Score=122.82 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=79.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCC------HH-HHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVAS------VD-EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s------~e-Ea~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~ 99 (294)
....++..+|++|+++|||+|++..++. .+ +..++.+++ + +|+++||. .+|.++ ||.++
T Consensus 564 al~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~l--g-~P~iVKP~--~~GsS~---------Gv~~v 629 (809)
T PRK14573 564 AIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAF--S-FPMFVKTA--HLGSSI---------GVFEV 629 (809)
T ss_pred HHHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhc--C-CCEEEeeC--CCCCCC---------CEEEE
Confidence 3557889999999999999999988863 22 234566788 8 89999997 455455 88888
Q ss_pred -CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 100 -KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 100 -s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.+|+.++.++.+... ..++|||++.+++|+.+++..|..
T Consensus 630 ~~~~el~~a~~~a~~~~-------------~~vlVEe~i~~grEi~v~vl~~~~ 670 (809)
T PRK14573 630 HNVEELRDKISEAFLYD-------------TDVFVEESRLGSREIEVSCLGDGS 670 (809)
T ss_pred CCHHHHHHHHHHHHhcC-------------CcEEEEeccCCCEEEEEEEEeCCC
Confidence 9999999988765321 468999999878999999998865
No 29
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.25 E-value=3.4e-10 Score=111.71 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=86.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
+..-++...|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||. .++.|+ ||.+. |.+|
T Consensus 111 ~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~i--g-~PvvvKP~--~g~gs~---------Gv~~v~~~~e 176 (449)
T TIGR00514 111 RLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRI--G-YPVIIKAT--AGGGGR---------GMRVVREPDE 176 (449)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHh--C-CCEEEEeC--CCCCCC---------ccEEECCHHH
Confidence 344678899999999999999874 778999999999999 8 89999997 444456 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEe
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~ 160 (294)
+.++++....... .+ .....++||+|+++++|+.+.+..|.. |.++.+
T Consensus 177 l~~~~~~~~~~~~--~~-----~~~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~ 224 (449)
T TIGR00514 177 LVKSISMTRAEAK--AA-----FGNDGVYIEKYIENPRHVEIQVLADKY--GNAIYL 224 (449)
T ss_pred HHHHHHHHHHHHH--Hh-----CCCCCEEEEECCCCCeEEEEEEEEcCC--CCEEEE
Confidence 9998887654211 00 112479999999978899999999875 444444
No 30
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.25 E-value=3e-10 Score=113.92 Aligned_cols=171 Identities=20% Similarity=0.302 Sum_probs=114.7
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~--a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
+..-++..+|++++++|||+|++.. +++.+|+.++++++ | ||+++||. .||.|| |+++. +.++
T Consensus 111 ~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~i--g-yPvvIKp~--~GgGG~---------Gv~iv~~~~e 176 (499)
T PRK08654 111 EAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEI--G-YPVIIKAS--AGGGGI---------GMRVVYSEEE 176 (499)
T ss_pred HHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHh--C-CCEEEEeC--CCCCCC---------eEEEeCCHHH
Confidence 3446789999999999999998875 68899999999999 8 89999996 565577 89999 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEe
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~ 183 (294)
+.+++++...... . ..+ -..++||++++..+|+.+.+..|.. |.++.++. .+- .+..++++. +.
T Consensus 177 L~~a~~~~~~~a~--~---~f~--~~~v~vE~~I~~~r~ieVqvl~d~~--G~vv~l~~---rec-siqrr~qk~---ie 240 (499)
T PRK08654 177 LEDAIESTQSIAQ--S---AFG--DSTVFIEKYLEKPRHIEIQILADKH--GNVIHLGD---REC-SIQRRHQKL---IE 240 (499)
T ss_pred HHHHHHHHHHHHH--H---hCC--CCeEEEEeCCCCCcEEEEEEEEcCC--CCEEEEee---ecc-ccccCccce---EE
Confidence 9998887643211 0 012 1469999999988999999999975 44554431 111 122223222 23
Q ss_pred ecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhh-ccCCCcEEEeecee
Q 022648 184 IDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLF-CESDCTLLEVSMNF 237 (294)
Q Consensus 184 l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~-~~~d~~~LEINPL~ 237 (294)
..|...++++. |.++++.+|+.+... .+++ .+.+..++||||-+
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gt----------VEfl~~~g~~yflEiNpRl 292 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGT----------VEFLYSNGNFYFLEMNTRL 292 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEECCcEEEEEEECCC
Confidence 34433355543 455566667655211 0122 24467789999955
No 31
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.25 E-value=7e-10 Score=108.23 Aligned_cols=100 Identities=25% Similarity=0.310 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCe-EEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~P-vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
-+++..|++|+++|||+|++..+++.+|+.++++++ + +| +|+||... +.|+ ||.+. |.+++.++
T Consensus 103 ~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~--g-~P~~VvKp~~~--~gg~---------Gv~~v~~~~el~~~ 168 (423)
T TIGR00877 103 GSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEK--G-APAIVVKADGL--AAGK---------GVIVAKTNEEAIKA 168 (423)
T ss_pred CCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhc--C-CCeEEEEECCC--CCCC---------CEEEECCHHHHHHH
Confidence 478899999999999999999999999999999999 8 89 99999733 3345 88999 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++++...+ |.....++||++++ +.|+.+.+..|..
T Consensus 169 ~~~~~~~~~--------g~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 169 VEEILEQKF--------GDAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHHhc--------CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 888765421 21225799999999 5899999998865
No 32
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.25 E-value=3.3e-10 Score=110.68 Aligned_cols=103 Identities=25% Similarity=0.301 Sum_probs=84.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-++...|++|+++|||+|++..+++.+++.++++++ + +|+|+||.... .|+ ||.+. |.+++.+
T Consensus 99 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~P~VvKP~~~~--gs~---------Gv~~v~~~~el~~ 164 (420)
T PRK00885 99 LEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEK--G-APIVVKADGLA--AGK---------GVVVAMTLEEAKA 164 (420)
T ss_pred HHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHc--C-CCEEEEeCCCC--CCC---------cEEEeCCHHHHHH
Confidence 34578899999999999999999999999999999999 8 89999997332 345 89999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++++.... .+.....++|||+++ +.|+.+.+..|..
T Consensus 165 ~~~~~~~~~~-------~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 165 AVDDMLAGNK-------FGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHHHHhhccc-------ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 9988764310 122225799999999 6899999998865
No 33
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.23 E-value=2.6e-10 Score=112.20 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=111.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~--~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
..-+++..|++|+++|||+|++ ..+++.+|+.++++++ + ||+|+||. .|+.|+ ||.+. |.+|+
T Consensus 112 ~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~--g-~PvvvKP~--~g~gs~---------Gv~iv~~~~el 177 (451)
T PRK08591 112 LMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEI--G-YPVIIKAT--AGGGGR---------GMRVVRTEAEL 177 (451)
T ss_pred HhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEEC--CCCCCc---------eEEEECCHHHH
Confidence 3457889999999999999987 4778999999999999 8 89999996 444456 88888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.+++++...... .. .+ -..++||++++++.|+.+.+..|+. |.++.++ ..+.. ....++ .. ...
T Consensus 178 ~~~~~~~~~~~~--~~---~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~---~~~~~-~~~~~~-~~--~~~ 241 (451)
T PRK08591 178 EKAFSMARAEAK--AA---FG--NPGVYMEKYLENPRHIEIQVLADGH--GNAIHLG---ERDCS-LQRRHQ-KV--LEE 241 (451)
T ss_pred HHHHHHHHHHHH--Hh---cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe---ccccc-ceecce-eE--EEE
Confidence 999887653210 00 11 1468999999877899999999976 4444432 21111 111111 11 233
Q ss_pred cCCCCCCH-------HHHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeecee
Q 022648 185 DVFNGITD-------EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNF 237 (294)
Q Consensus 185 ~p~~gl~~-------~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~ 237 (294)
.|...++. +.+.++++.+|+.|... .+++.+ .+..++||||=+
T Consensus 242 ~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~----------vEf~~~~~g~~~viEINpR~ 293 (451)
T PRK08591 242 APSPAITEELRRKIGEAAVKAAKAIGYRGAGT----------IEFLYEKNGEFYFIEMNTRI 293 (451)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEcCCCCEEEEEEECCC
Confidence 34334554 23455566677665311 133433 346689999954
No 34
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.23 E-value=7.2e-10 Score=107.40 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=85.2
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
+.-++.-++..+|++|+++|||+|++..+++.+++.++++++ + +|+|+||... +.|| ||.+. |.+
T Consensus 60 ~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~--g-~PvVvKp~~~--~~gk---------GV~iv~~~~ 125 (379)
T PRK13790 60 QAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENC--E-LPVVVKKDGL--AAGK---------GVIIADTIE 125 (379)
T ss_pred HHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhc--C-CCEEEEeCCC--CCCC---------CEEEECCHH
Confidence 334455788999999999999999999999999999999999 8 8999999743 3467 88888 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
|+.++++++++.. . -..++|||+++ +.|+.+.+..|..
T Consensus 126 el~~a~~~~~~~~--------~---~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 126 AARSAIEIMYGDE--------E---EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHHHHHHHHhcC--------C---CCeEEEEEccc-CceEEEEEEeeCC
Confidence 9999998876321 0 14699999998 6899999988865
No 35
>PRK05586 biotin carboxylase; Validated
Probab=99.22 E-value=3.6e-10 Score=111.51 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=112.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~--~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
...-++...|++++++|||+|++ ..+.+.+|+.++++++ | ||+|+||. .||.|+ |+.+. |.++
T Consensus 111 ~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~i--g-yPvvvKP~--~gggg~---------Gv~~v~~~~e 176 (447)
T PRK05586 111 ELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEI--G-YPVMVKAS--AGGGGR---------GIRIVRSEEE 176 (447)
T ss_pred HhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEEC--CCCCCC---------eeEEECCHHH
Confidence 34467889999999999999998 4678999999999999 8 89999996 455567 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEe
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~ 183 (294)
+.+++++...... .. .+ -..++||+++++..|+.+.+..|.. |-++.++ ..+. ....++. ++ ..
T Consensus 177 l~~a~~~~~~~~~--~~---~~--~~~vivEe~i~g~~ei~v~v~~d~~--G~~~~~~---~~~~-~~~~~~~-~~--~~ 240 (447)
T PRK05586 177 LIKAFNTAKSEAK--AA---FG--DDSMYIEKFIENPKHIEFQILGDNY--GNVVHLG---ERDC-SLQRRNQ-KV--LE 240 (447)
T ss_pred HHHHHHHHHHHHH--Hh---cC--CCeEEEEecCCCCeEEEEEEEECCC--CCEEEEe---ceec-ceEeccc-ce--EE
Confidence 9998876544321 00 11 1469999999977898899999875 4444443 1110 0111111 12 22
Q ss_pred ecCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeecee
Q 022648 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNF 237 (294)
Q Consensus 184 l~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~ 237 (294)
..|...++++ .+.++++.+|+.+... .+++.+. +..++||||-+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~----------vEf~~~~~g~~~~iEvNpR~ 293 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGT----------IEFLLDKDGNFYFMEMNTRI 293 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeE----------EEEEEcCCCCEEEEEEECCC
Confidence 3343335553 2556666777655311 1334432 35779999965
No 36
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.20 E-value=3.1e-10 Score=122.67 Aligned_cols=165 Identities=19% Similarity=0.243 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-+....|++|+++|+|+|++..+++.+|+.++++++ | ||+|+||. .++.|+ |+.+. |++|+.++
T Consensus 125 ~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i--g-yPvIVKP~--~g~gg~---------Gv~iv~~~eeL~~~ 190 (1050)
T TIGR01369 125 AEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEI--G-YPVIVRPA--FTLGGT---------GGGIAYNREELKEI 190 (1050)
T ss_pred hCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHh--C-CCeEEECC--CCCCCC---------CeEEECCHHHHHHH
Confidence 3567788999999999999999999999999999999 8 89999997 444456 67777 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeecc---ccCCCeEEEEee
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKVPI 184 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~---~~~pd~v~~~~l 184 (294)
+.+.+... ....++||+++++.+|+.+.+.+|.. +.++.+.. +|..+ -++.+. ..+
T Consensus 191 ~~~~~~~s-----------~~~~vlVEe~I~G~~Eiev~v~rd~~--g~~~~~~~-----~e~~~p~gvh~g~~---i~v 249 (1050)
T TIGR01369 191 AERALSAS-----------PINQVLVEKSLAGWKEIEYEVMRDSN--DNCITVCN-----MENFDPMGVHTGDS---IVV 249 (1050)
T ss_pred HHHHHhcC-----------CCCcEEEEEcccCceEEEEEEEEeCC--CCEEEEee-----ceeccCcceecCce---EEE
Confidence 87765431 12579999999987999999999976 33443321 22221 111122 223
Q ss_pred cCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc---CCCcEEEeeceeE
Q 022648 185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEVSMNFY 238 (294)
Q Consensus 185 ~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~---~d~~~LEINPL~v 238 (294)
.|.+.+++. .|.++++.+|+.|... .+++.+ .+..++||||=+.
T Consensus 250 ~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~----------Vef~l~~~~g~~~viEiNPR~~ 303 (1050)
T TIGR01369 250 APSQTLTDKEYQMLRDASIKIIRELGIEGGCN----------VQFALNPDSGRYYVIEVNPRVS 303 (1050)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCcceeE----------EEEEEECCCCcEEEEEeecCcC
Confidence 444445542 3556677777765421 134443 2356899999553
No 37
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.19 E-value=5.7e-10 Score=110.99 Aligned_cols=171 Identities=18% Similarity=0.282 Sum_probs=113.9
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~--a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
+..-++...|++|+++|||+|++.. +++.+|+.++++++ | ||+|+||. .||.|+ ||.+. |++|
T Consensus 110 ~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~i--g-yPvvvKp~--~ggGg~---------Gv~~v~~~~e 175 (472)
T PRK07178 110 RRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERI--G-YPVMLKAT--SGGGGR---------GIRRCNSREE 175 (472)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHc--C-CcEEEEeC--CCCCCC---------CceEeCCHHH
Confidence 3445788999999999999998864 78899999999999 8 89999996 455567 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEe
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~ 183 (294)
+.+++++...... .+ .+ ...+++|++++.++|+.+.+..|.. |-++.+. .... ....+++.. ..
T Consensus 176 L~~a~~~~~~~~~--~~---~~--~~~v~iE~~i~~~~eiev~v~~d~~--G~~v~~~-er~~---s~~~~~~~~---~e 239 (472)
T PRK07178 176 LEQNFPRVISEAT--KA---FG--SAEVFLEKCIVNPKHIEVQILADSH--GNVVHLF-ERDC---SIQRRNQKL---IE 239 (472)
T ss_pred HHHHHHHHHHHHH--Hh---cC--CCCEEEEEcCCCCeEEEEEEEEECC--CCEEEEE-cccc---ceEecCcce---EE
Confidence 9998887654321 11 11 1468999999888999899999875 3333332 1111 111112222 23
Q ss_pred ecCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeecee
Q 022648 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNF 237 (294)
Q Consensus 184 l~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~ 237 (294)
..|...++++ .+.++++.+|+.+.-. .+++.+ .+..++||||-+
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~----------vEf~~d~~g~~y~iEiNpRl 292 (472)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGT----------VEFLLDADGEVYFMEMNTRV 292 (472)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeE----------EEEEEeCCCCEEEEEEeCCc
Confidence 4444346654 4556677777655210 134443 356789999954
No 38
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.19 E-value=1.1e-09 Score=108.77 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=84.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
..-++...|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||. .||.|+ ||++. |++++
T Consensus 115 ~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~i--g-yPvvvKp~--~gggg~---------Gv~~v~~~~eL 180 (467)
T PRK12833 115 TMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARI--G-YPLMIKAA--AGGGGR---------GIRVAHDAAQL 180 (467)
T ss_pred HhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHh--C-CCEEEEEC--CCCCCC---------eEEEECCHHHH
Confidence 44578999999999999999885 788999999999999 8 89999996 555567 88898 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.++++....... .. .+ -..++||++++.++|+.+.+..|..
T Consensus 181 ~~a~~~~~~~~~--~~---~~--~~~vlvEefi~~~~ei~v~v~~dg~ 221 (467)
T PRK12833 181 AAELPLAQREAQ--AA---FG--DGGVYLERFIARARHIEVQILGDGE 221 (467)
T ss_pred HHHHHHHHHHHH--Hh---cC--CCcEEEEecCCCCEEEEEEEEeCCC
Confidence 998876543211 00 12 1469999999888999999999876
No 39
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.19 E-value=3.5e-10 Score=105.78 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=74.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeC-CHHHH-----HHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-C
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVA-SVDEV-----KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K 100 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~-s~eEa-----~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s 100 (294)
...++...|++|+++|||+|++..++ +.++. ..+...+ + +|+|+||. .++.++ ||.+. |
T Consensus 102 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~--~-~P~vvKP~--~~~~s~---------Gv~~v~~ 167 (315)
T TIGR01205 102 LSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPL--G-FPVIVKPA--REGSSV---------GVSKVKS 167 (315)
T ss_pred HHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhc--C-CCEEEEeC--CCCCcc---------CEEEECC
Confidence 44688899999999999999999887 54322 2344567 7 89999996 444355 78888 9
Q ss_pred HHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 101 ~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.+++.+++++.... + ..++||++++ |.|+.+++..+..
T Consensus 168 ~~el~~~~~~~~~~----------~---~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 168 EEELQAALDEAFEY----------D---EEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred HHHHHHHHHHHHhc----------C---CcEEEEcCCC-CEEEEEEEECCCC
Confidence 99999988775422 1 3689999998 8999999988654
No 40
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.18 E-value=4.8e-10 Score=121.42 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=114.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-+....|++|+++|||+|++..+++.+|+.++++++ | +|+|+||. .|..|+ |+.+. |++++.+
T Consensus 125 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i--g-~PvVVKP~--~g~gg~---------Gv~iv~~~eeL~~ 190 (1066)
T PRK05294 125 KAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEI--G-YPVIIRPS--FTLGGT---------GGGIAYNEEELEE 190 (1066)
T ss_pred HhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHc--C-CCeEEEcC--CCCCCC---------CeEEECCHHHHHH
Confidence 34567788999999999999999999999999999999 8 89999996 344456 77778 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeecc---ccCCCeEEEEe
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKVP 183 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~---~~~pd~v~~~~ 183 (294)
++++.+... ....++||+++++..|+.+.+.+|.. +-++.+.. +|..+ -++.+. ..
T Consensus 191 a~~~~~~~s-----------~~~~vlvEe~I~G~~Eisv~v~rd~~--g~~~~~~~-----~e~~dp~gih~g~~---~~ 249 (1066)
T PRK05294 191 IVERGLDLS-----------PVTEVLIEESLLGWKEYEYEVMRDKN--DNCIIVCS-----IENIDPMGVHTGDS---IT 249 (1066)
T ss_pred HHHHHHhhC-----------CCCeEEEEEcccCceEEEEEEEEcCC--CCEEEEee-----eeeccccceecCCe---EE
Confidence 888654321 12479999999977999999999976 33333321 22221 011112 22
Q ss_pred ecCCCCCCH-------HHHHHHHHhCCCC-cccHHHHHHHHHHHHHhhcc---CCCcEEEeeceeE
Q 022648 184 IDVFNGITD-------EDAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEVSMNFY 238 (294)
Q Consensus 184 l~p~~gl~~-------~~a~~~~~~lg~~-~~~~~~l~~~l~~L~~l~~~---~d~~~LEINPL~v 238 (294)
+.|...+++ +.|.++++.+|+. |... .+++.+ .+..++||||=+.
T Consensus 250 ~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~----------vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 250 VAPAQTLTDKEYQMLRDASIAIIREIGVETGGCN----------VQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceE----------EEEEEECCCCcEEEEEeecCCC
Confidence 344434554 3456667788877 6422 134443 2356799999653
No 41
>PRK08462 biotin carboxylase; Validated
Probab=99.16 E-value=1.3e-09 Score=107.37 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=81.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
+..-++...|++|+++|||+|++. .+++.+|+.++++++ | +|+|+||. .|+.|+ ||.+. |+++
T Consensus 113 ~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~--g-~PvvvKP~--~g~gs~---------Gv~~v~~~~e 178 (445)
T PRK08462 113 ALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEI--G-YPVILKAA--AGGGGR---------GMRVVEDESD 178 (445)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEeC--CCCCCC---------CeEEECCHHH
Confidence 344678999999999999999864 678899999999999 8 89999996 444466 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.+++........ .+ .+ -..++||+++++++|+.+.+..|..
T Consensus 179 L~~~~~~~~~~~~--~~---~~--~~~vlvEe~i~g~~e~~v~v~~~~~ 220 (445)
T PRK08462 179 LENLYLAAESEAL--SA---FG--DGTMYMEKFINNPRHIEVQILGDKH 220 (445)
T ss_pred HHHHHHHHHHHHH--hc---cC--CCcEEEeccCCCCeEEEEEEEECCC
Confidence 9988766433211 00 11 1368999999878898898888864
No 42
>PLN02735 carbamoyl-phosphate synthase
Probab=99.15 E-value=1.1e-09 Score=118.78 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-+....|++|+++|||+|++..+++.+|+.++++++ |.||+|+||....| |+ |+.++ |.+|+.++
T Consensus 142 ~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~i--G~yPvVVKP~~~~G--G~---------Gv~iv~n~eEL~~a 208 (1102)
T PLN02735 142 AEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDI--GEFPLIIRPAFTLG--GT---------GGGIAYNKEEFETI 208 (1102)
T ss_pred hcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHh--CCCCEEEEeCCCCC--CC---------ceEEECCHHHHHHH
Confidence 4567788999999999999999999999999999998 64699999974333 44 66778 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeecc---ccCCCeEEEEee
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKVPI 184 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~---~~~pd~v~~~~l 184 (294)
+++.+... ..+.++||+++.+++|+.+.+.+|... ..++++. +|..+ -++.|.. .+
T Consensus 209 ~~~a~~~s-----------~~~~VLVEe~I~G~kE~ev~Vl~D~~g-~~i~v~~------ie~~dp~gvh~G~s~---~v 267 (1102)
T PLN02735 209 CKAGLAAS-----------ITSQVLVEKSLLGWKEYELEVMRDLAD-NVVIICS------IENIDPMGVHTGDSI---TV 267 (1102)
T ss_pred HHHHHhcC-----------CCCeEEEEEecCCCeEEEEEEEEcCCC-CEEEEee------EEEEcCCccccCCEE---EE
Confidence 88765321 125799999999779999999999652 3333332 23221 1223333 33
Q ss_pred cCCCCCCHH-------HHHHHHHhCCCC-cccHHHHHHHHHHHHHhhcc---CCCcEEEeecee
Q 022648 185 DVFNGITDE-------DAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEVSMNF 237 (294)
Q Consensus 185 ~p~~gl~~~-------~a~~~~~~lg~~-~~~~~~l~~~l~~L~~l~~~---~d~~~LEINPL~ 237 (294)
.|.+.+++. .|.++++.+|+. |... .+++.+ .+..++||||-+
T Consensus 268 aPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~n----------Vqf~l~~~~g~~~ViEVNPR~ 321 (1102)
T PLN02735 268 APAQTLTDKEYQRLRDYSVAIIREIGVECGGSN----------VQFAVNPVDGEVMIIEMNPRV 321 (1102)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceE----------EEEEEECCCCcEEEEEecCCC
Confidence 444446653 245556677773 5322 134443 246689999955
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=99.15 E-value=1.2e-09 Score=118.59 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=114.2
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 25 ~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
.-+..-+....|++|+++|||+|++..+++.+|+.++++++ | ||+++||. .++.|+ |+.++ |.++
T Consensus 696 ~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~i--G-yPvvVKP~--~g~gG~---------G~~iV~~~ee 761 (1102)
T PLN02735 696 SIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRI--G-YPVVVRPS--YVLGGR---------AMEIVYSDDK 761 (1102)
T ss_pred HHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhc--C-CCeEEEeC--CCCCCC---------cEEEECCHHH
Confidence 33455678899999999999999999999999999999999 8 89999997 344466 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCce-eeeccccCCCeEEEE
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTS-IEDLAEKYPNMIVKV 182 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~-vE~l~~~~pd~v~~~ 182 (294)
+.+++++..... + -..++||++++.+.|+.+.+..|.. |-+++.+. ++ ++...-+..|....+
T Consensus 762 L~~al~~a~~~~---------~--~~~vlVEefI~~g~Ei~V~vl~D~~--G~vv~~~i---~e~~~~~gvhsGds~~~~ 825 (1102)
T PLN02735 762 LKTYLETAVEVD---------P--ERPVLVDKYLSDATEIDVDALADSE--GNVVIGGI---MEHIEQAGVHSGDSACSL 825 (1102)
T ss_pred HHHHHHHHHHhc---------C--CCCEEEEEecCCcEEEEEEEEECCC--CCEEEecc---eEeeeccCccCCCccEEe
Confidence 999888765321 1 1369999999888999999999976 33333221 11 111111112333222
Q ss_pred eecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeecee
Q 022648 183 PIDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNF 237 (294)
Q Consensus 183 ~l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~ 237 (294)
| ...++++. +.++++.+++.|... .+++.+ .+..++||||-+
T Consensus 826 P---~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~----------vqf~v~~dg~~yviEiNpR~ 876 (1102)
T PLN02735 826 P---TQTIPSSCLATIRDWTTKLAKRLNVCGLMN----------CQYAITPSGEVYIIEANPRA 876 (1102)
T ss_pred c---CCCCCHHHHHHHHHHHHHHHHHcCCcceee----------EEEEEcCCCcEEEEEEeCCC
Confidence 2 22355432 555566666655321 133432 346789999965
No 44
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.13 E-value=7.7e-09 Score=99.29 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=79.1
Q ss_pred CCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 30 IHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 30 L~E~~ak~lL-~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.+.+..|+++ +++|||+|++..+++.+++.++++++ | ||+|+||. .|+.|+ ||.+. |.+++.++
T Consensus 99 ~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~VvKP~--~g~~s~---------gv~~v~~~~el~~~ 164 (380)
T TIGR01142 99 MNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKI--G-YPCVVKPV--MSSSGK---------GQSVVRGPEDIEKA 164 (380)
T ss_pred hCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHc--C-CCEEEEEC--CCcCCC---------CeEEECCHHHHHHH
Confidence 4677778875 89999999999999999999999999 8 89999996 444455 88888 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++.+..... + .-..++||+|++++.|+.+.+.++..
T Consensus 165 ~~~~~~~~~--------~-~~~~~ivEe~i~~~~E~sv~~~~~~~ 200 (380)
T TIGR01142 165 WEYAQEGAR--------G-GAGRVIVEEFIDFDYEITLLTVRHVD 200 (380)
T ss_pred HHHHHhhcc--------C-CCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 887643210 0 11469999999977899888777644
No 45
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.13 E-value=5.8e-09 Score=88.99 Aligned_cols=96 Identities=28% Similarity=0.300 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~ 109 (294)
+++..+++++++|||+|++..+++.+++.++.+.+ + +|+|+||..-.+ ++ ||.+. |++++.+.++
T Consensus 4 dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~--~-~p~vvKp~~g~g--s~---------gv~~~~~~~~l~~~~~ 69 (184)
T PF13535_consen 4 DKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDL--G-FPFVVKPVDGSG--SR---------GVFIVHSPEELEAALA 69 (184)
T ss_dssp CHHHHHHHHHHHTS----EEEECSHHHHHHHHHHS--S-SSEEEEESS-ST--TT---------T-EEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHc--C-CCEEEEcCcccc--CC---------CEEEeCCHHHHHHHHH
Confidence 57788999999999999999999999999999999 8 899999973222 44 88888 9999999988
Q ss_pred HHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 110 ~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
++.... . .....+++|++++ +.|+.+-+..+
T Consensus 70 ~~~~~~--------~-~~~~~~ivqe~i~-g~e~~~~~~~~ 100 (184)
T PF13535_consen 70 EIREDS--------P-LGNGPVIVQEYIP-GDEYSVDGVVD 100 (184)
T ss_dssp HHHHHH--------S--HSSSEEEEE----SEEEEEEEEEE
T ss_pred HHHHhc--------c-cCCccEEEEEeee-eeeEEEEEEEE
Confidence 875442 0 1125799999999 79999988777
No 46
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.12 E-value=7.5e-09 Score=99.86 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=80.7
Q ss_pred CCHHHHHHHHH-HcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 30 IHEYQGAELMA-KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 30 L~E~~ak~lL~-~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
-+++..|++|. ++|||+|++..+++.+|+.++++++ + ||+|+||. .+..|+ ||.+. |.+++.++
T Consensus 112 ~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~--g-~P~VvKP~--~g~~s~---------Gv~~v~~~~el~~~ 177 (395)
T PRK09288 112 MNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEI--G-YPCVVKPV--MSSSGK---------GQSVVRSPEDIEKA 177 (395)
T ss_pred hCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhc--C-CCEEEEeC--CCcCCC---------CeEEECCHHHHHHH
Confidence 45677888884 7999999999999999999999999 8 89999996 333456 88888 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++.+.... + + .-..++||||++.+.|+.+.+.+|..
T Consensus 178 ~~~~~~~~---~-----~-~~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 178 WEYAQEGG---R-----G-GAGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred HHHHHhhc---c-----c-cCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 88865421 0 0 01469999999988999999888865
No 47
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.12 E-value=4.3e-10 Score=105.04 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
...++...|++|+ .|||+|++..+++.. ..+.+ + +|+|+||. .++.++ ||.+. |.+++.+
T Consensus 92 i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l--~-~P~vvKP~--~g~~s~---------Gv~~v~~~~el~~ 152 (299)
T PRK14571 92 ICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPL--G-YPCVVKPR--REGSSI---------GVFICESDEEFQH 152 (299)
T ss_pred HHcCHHHHHHHHh-cCCCCCCEEEEechh----hhhhc--C-CCEEEecC--CCCCcC---------CEEEECCHHHHHH
Confidence 4457888899998 589999999886532 23567 7 89999997 444456 88888 9999998
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.++.+... +.++||||++ |.|+.+++..+..
T Consensus 153 ~~~~~~~~~-------------~~vlVEeyI~-G~E~sv~vl~~~~ 184 (299)
T PRK14571 153 ALKEDLPRY-------------GSVIVQEYIP-GREMTVSILETEK 184 (299)
T ss_pred HHHHHHhhC-------------CcEEEEcccc-ceEEEEEEEcCCC
Confidence 887654321 4699999998 7899999998754
No 48
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.09 E-value=2.2e-09 Score=103.70 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-+....|++|++.|+|+| +.++++.+|+.+.++.+ | +|+++||..-.|| . |..+. |.+|+.+.
T Consensus 114 aeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~i--g-~PvIVrP~~~lGG--~---------G~~i~~n~eel~~~ 178 (400)
T COG0458 114 AEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEI--G-YPVIVKPSFGLGG--S---------GGGIAYNEEELEEI 178 (400)
T ss_pred hhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhc--C-CCEEEecCcCCCC--C---------ceeEEeCHHHHHHH
Confidence 3456778999999999999 77999999999999999 9 8999999744443 2 44455 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~ 187 (294)
....+... .++.+++|+++.+++|+...+.+|.+. -+++++. .+-. +...-++-|++ ...|.
T Consensus 179 ~~~~l~~s-----------~~~~vl~eesi~G~ke~e~ev~rd~~~-n~ivvc~-men~--dp~gvhtgdsi---~vapa 240 (400)
T COG0458 179 IEEGLRAS-----------PVEEVLIEESIIGWKEFEYEVVRDGKD-NCIVVCN-MENL--DPMGVHTGDSI---TVAPA 240 (400)
T ss_pred HHhccccC-----------ccccceeeeeecCceEEEEEEEEeCCC-CEEEEEe-CCcc--cccccccccee---eeccc
Confidence 88776442 357899999999999999999999984 4555555 4333 33333445555 35555
Q ss_pred CCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC---CCcEEEeecee
Q 022648 188 NGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES---DCTLLEVSMNF 237 (294)
Q Consensus 188 ~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~---d~~~LEINPL~ 237 (294)
+.+++. .+-++++.+|..|...- |+..+. +...+|+||=+
T Consensus 241 qtl~d~eyq~~r~~~~~iir~igi~G~~ni----------Q~av~~~~~~~~viEvNpRv 290 (400)
T COG0458 241 QTLTDKEYQMLRDAAIKVIREIGIEGGCNI----------QFAVDPGGGELYVIEINPRV 290 (400)
T ss_pred cccccHHHHHHHHHHHHHHHHhcccCCCce----------eEEEcCCCceEEEEEecCCc
Confidence 545553 23344556666554331 334443 34669999954
No 49
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.08 E-value=4.7e-09 Score=114.67 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=86.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~-~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
+..-+++.+|++|+++|||+|+ +.++++.+|+.++++++ + ||+|+||. .++.|| ||.++ |.+|+
T Consensus 110 ~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~i--g-yPvVVKP~--~ggGG~---------GV~iv~~~eEL 175 (1201)
T TIGR02712 110 RKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEI--G-YPVMLKST--AGGGGI---------GMQKCDSAAEL 175 (1201)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhc--C-CeEEEEEC--CCCCCC---------CEEEECCHHHH
Confidence 3456789999999999999966 66789999999999999 8 89999997 455567 88898 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEe
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~ 160 (294)
.+++++...... .. .+ -.+++||+|++.+.|+.+.+..|.. +-++.+
T Consensus 176 ~~a~~~~~~~~~--~~---f~--~~~vlVEefI~g~~eveV~v~~Dg~--g~vv~l 222 (1201)
T TIGR02712 176 AEAFETVKRLGE--SF---FG--DAGVFLERFVENARHVEVQIFGDGK--GKVVAL 222 (1201)
T ss_pred HHHHHHHHHHHH--Hh---cC--CCcEEEEecCCCCEEEEEEEEECCC--CeEEEe
Confidence 988887643210 00 11 1469999999988999999999976 445544
No 50
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.07 E-value=4.3e-09 Score=103.44 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=82.1
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 26 RRLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 26 ~~~~L~E~~ak~lL~~yGIpvp~~--~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
-+..-+++..|++|+++|||+|++ ..+++.+|+.++++.+ + ||+|+||. .++.|+ ||.+. +.+
T Consensus 110 ~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~--~-~P~VvKP~--~g~gs~---------Gv~iv~~~~ 175 (450)
T PRK06111 110 IAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQI--G-YPVMLKAS--AGGGGI---------GMQLVETEQ 175 (450)
T ss_pred HHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHh--C-CCEEEEeC--CCCCCc---------eEEEECCHH
Confidence 345567899999999999999986 4558899999999999 8 89999997 344456 88888 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
|+.++++....... ... + -..++||+++++..|+.+.+..|..
T Consensus 176 el~~a~~~~~~~~~--~~~---~--~~~~lvEe~i~g~~e~~v~v~~~~~ 218 (450)
T PRK06111 176 ELTKAFESNKKRAA--NFF---G--NGEMYIEKYIEDPRHIEIQLLADTH 218 (450)
T ss_pred HHHHHHHHHHHHHH--Hhc---C--CCcEEEEcccCCCcEEEEEEEEcCC
Confidence 99998887543210 000 1 1369999999977888898888865
No 51
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.07 E-value=4e-09 Score=100.95 Aligned_cols=185 Identities=20% Similarity=0.191 Sum_probs=126.9
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea 104 (294)
+..-+.+.-|++|++.|||||+++.+.+.+|+.++++++ | +|.|+|.. .|| +|| |..+. +++++
T Consensus 95 ~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~--g-~p~VlKtr--~gGYDGk---------GQ~~i~~~~~~ 160 (375)
T COG0026 95 RIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADL--G-FPAVLKTR--RGGYDGK---------GQWRIRSDADL 160 (375)
T ss_pred HHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHc--C-CceEEEec--cccccCC---------CeEEeeCcccc
Confidence 344456788999999999999999999999999999999 8 89999986 555 899 55555 77777
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.+.+...... ...++|+|+++.+|+.+-+.|++. |-+..+= -+|.+.+ |.+++..+
T Consensus 161 ~~~~~~~~~~--------------~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP-----~~eN~h~---~gIl~~si 216 (375)
T COG0026 161 ELRAAGLAEG--------------GVPVLEEFVPFEREISVIVARSND--GEVAFYP-----VAENVHR---NGILRTSI 216 (375)
T ss_pred hhhHhhhhcc--------------CceeEEeecccceEEEEEEEEcCC--CCEEEec-----ccceeee---cCEEEEEE
Confidence 7654443211 123899999999999998888876 4443332 2566654 57777777
Q ss_pred cCCCCCCH---HH----HHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcE--EEeeceeEecCCcEEEEEEEEechh
Q 022648 185 DVFNGITD---ED----AAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTL--LEVSMNFYISLVLLICMSLLVGGQV 255 (294)
Q Consensus 185 ~p~~gl~~---~~----a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~--LEINPL~v~~dg~~valDa~i~~~~ 255 (294)
.|. .++. +. |.++++.|++-|.-- -++|.-.|..+ =||-|=+-+ .| .+-.|+--.||+
T Consensus 217 aPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~----------vE~Fv~~dg~llvNEiAPRvHN-SG-H~T~~gc~~SQF 283 (375)
T COG0026 217 APA-RIPDDLQAQAEEMAKKIAEELDYVGVLA----------VEFFVTPDGELLVNEIAPRVHN-SG-HWTIDGCETSQF 283 (375)
T ss_pred ecC-cCCHHHHHHHHHHHHHHHHHcCceEEEE----------EEEEEECCCcEEEeeccCCCCC-cc-ccchhhccccHH
Confidence 774 2443 22 344455665544210 14555555343 377775443 35 799999999999
Q ss_pred hHHHHHh
Q 022648 256 ELVIHLV 262 (294)
Q Consensus 256 ~~~~~~~ 262 (294)
|.=.+-|
T Consensus 284 EqHlRAv 290 (375)
T COG0026 284 EQHLRAV 290 (375)
T ss_pred HHHHHHH
Confidence 9755533
No 52
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.07 E-value=4.5e-09 Score=91.63 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=81.4
Q ss_pred HHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhh
Q 022648 39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV 117 (294)
Q Consensus 39 L~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~ 117 (294)
|++.|||+|++..+.+.+|+.++++++ | +|+|+|+.. .|.+|| |..+. +.+++.++++.+ +.
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~i--G-~P~vlK~~~-~GYDGk---------Gq~~i~~~~dl~~a~~~~-~~--- 63 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESI--G-FPAVLKTRR-GGYDGK---------GQFVIRSEEDLEKAWQEL-GG--- 63 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHH--T-SSEEEEESS-SSCTTT---------TEEEESSGGGHHHHHHHT-TT---
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEccC-cCcCCC---------ccEEECCHHHHHHHHHhc-CC---
Confidence 678999999999999999999999999 9 899999741 344888 66666 999999888876 11
Q ss_pred hhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCCCCCCH
Q 022648 118 TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 192 (294)
Q Consensus 118 ~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~ 192 (294)
..+++|++++..+|+.+-+.||.. |-+..+- -+|...+ |.++...+.|.. ++.
T Consensus 64 -----------~~~ilE~~v~f~~EiSvivaR~~~--G~~~~yp-----~~en~~~---~~il~~s~~Pa~-i~~ 116 (172)
T PF02222_consen 64 -----------GPCILEEFVPFDREISVIVARDQD--GEIRFYP-----PVENVHR---DGILHESIAPAR-ISD 116 (172)
T ss_dssp -----------SCEEEEE---ESEEEEEEEEEETT--SEEEEEE-----EEEEEEE---TTEEEEEEESCS-S-H
T ss_pred -----------CcEEEEeccCCcEEEEEEEEEcCC--CCEEEEc-----CceEEEE---CCEEEEEECCCC-CCH
Confidence 468999999999999999999987 4444443 2454432 456666666643 444
No 53
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.06 E-value=8.2e-09 Score=102.95 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=110.9
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeee---CCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-C
Q 022648 25 LRRLNIHEYQGAELMAKYGINVPKGLAV---ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K 100 (294)
Q Consensus 25 ~~~~~L~E~~ak~lL~~yGIpvp~~~~a---~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s 100 (294)
.-+..-++...|++++++|||+|++... .+.+|+.++++++ | ||+++||. .|+.|| |+++. |
T Consensus 108 ~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~i--g-yPvvvKP~--~ggGg~---------Gv~iv~~ 173 (478)
T PRK08463 108 VIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKI--G-YPVILKAS--GGGGGR---------GIRVVHK 173 (478)
T ss_pred HHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHh--C-CCEEEEeC--CCCCCC---------ceEEeCC
Confidence 3334456889999999999999885442 5788999999999 8 89999996 455467 88898 9
Q ss_pred HHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEE
Q 022648 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (294)
Q Consensus 101 ~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~ 180 (294)
.+++.++++....... .. .+ -..++||+|++.++|+.+.+..|.. |.++.++... . ...+++++.
T Consensus 174 ~~eL~~a~~~~~~~a~--~~---~~--~~~vlvEefI~~~~~iev~v~~d~~--g~v~~~~er~-~---s~~~~~~~~-- 238 (478)
T PRK08463 174 EEDLENAFESCKREAL--AY---FN--NDEVFMEKYVVNPRHIEFQILGDNY--GNIIHLCERD-C---SIQRRHQKV-- 238 (478)
T ss_pred HHHHHHHHHHHHHHHH--Hh---cC--CCcEEEEecCCCCeEEEEEEEEcCC--CCEEEEeccC-C---ccccccCce--
Confidence 9999988776432210 00 11 1468999999877888888888874 4444443111 1 112222322
Q ss_pred EEeecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeecee
Q 022648 181 KVPIDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNF 237 (294)
Q Consensus 181 ~~~l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~ 237 (294)
+...|...++++. +.++++.+|+.+.-. .+++.+ .+..++||||-+
T Consensus 239 -ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~----------vEf~~~~~~~~y~iEiN~R~ 293 (478)
T PRK08463 239 -IEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGT----------IEFLLDDYNRFYFMEMNTRI 293 (478)
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCcee----------EEEEEcCCCCEEEEEEECCc
Confidence 3445544466543 345566667655210 133433 356789999954
No 54
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.03 E-value=9.9e-09 Score=101.44 Aligned_cols=107 Identities=27% Similarity=0.372 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~--a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
=++..+|+++++.|+|+|++.- ..+.+|+.+.++++ | |||+|||. +||-|+ |++++ +.+++.+
T Consensus 114 gdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~i--G-yPVivKa~--~GgGg~---------G~r~v~~~~el~~ 179 (449)
T COG0439 114 GDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEI--G-YPVIVKAA--AGGGGR---------GMRVVRNEEELEA 179 (449)
T ss_pred hhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHc--C-CCEEEEEC--CCCCcc---------cEEEECCHHHHHH
Confidence 3678999999999999999882 45678999999999 9 89999997 666577 99999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEE
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII 159 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil 159 (294)
++.++.+... .. .|. ..+++|+++...+=.-+.+.-|.. +-++-
T Consensus 180 a~~~~~~ea~--~~---fg~--~~v~iEk~i~~~rhievqv~gD~~--g~~i~ 223 (449)
T COG0439 180 AFEAARGEAE--AA---FGN--PRVYLEKFIEGPRHIEVQVLGDGH--GNVIH 223 (449)
T ss_pred HHHHHHHHHH--Hh---cCC--CcEEeeeeccCCceEEEEEEEcCc--ccEEE
Confidence 9999876531 11 222 359999999765544567777776 44443
No 55
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.98 E-value=1.1e-08 Score=111.26 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=85.8
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 26 RRLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 26 ~~~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
-+..-++..+|++++++|||+|++. .+.+.+|+.++++++ | ||+++||. .|+.|+ |+++. +.+
T Consensus 114 i~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~i--G-yPvVVKP~--~GgGGr---------Gv~vV~~~e 179 (1146)
T PRK12999 114 LRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEI--G-YPIMLKAS--AGGGGR---------GMRIVRSEE 179 (1146)
T ss_pred HHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHh--C-CCEEEEEC--CCCCCC---------CeEEeCCHH
Confidence 3344678999999999999998866 479999999999999 8 89999996 555466 88888 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEe
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~ 160 (294)
|+.+++++...... . ..| -..++||+++++.+|+.+.+..|.. |-++.+
T Consensus 180 EL~~a~~~a~~ea~---~--~fg--~~~vlVEefI~g~~~ieVqvl~D~~--G~vv~l 228 (1146)
T PRK12999 180 ELEEAFERAKREAK---A--AFG--NDEVYLEKYVENPRHIEVQILGDKH--GNVVHL 228 (1146)
T ss_pred HHHHHHHHHHHHHH---h--hcC--CCcEEEecCCCCCeEEEEEEEEECC--CCEEEE
Confidence 99998887654321 0 012 1469999999977888888888865 444433
No 56
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.97 E-value=3.5e-08 Score=98.41 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=79.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHHH--hCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~--a~s~eEa~~aa~~--l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ 101 (294)
+...++..+|++++++|||+|++.. +.+.+++..+++. + | +|+||||. .||.|+ |+.++ +.
T Consensus 138 ai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~I--G-yPvVVKP~--~GGSS~---------GV~~Vkn~ 203 (493)
T PRK06524 138 HRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGL--G-DDLVVQTP--YGDSGS---------TTFFVRGQ 203 (493)
T ss_pred HHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccC--C-CcEEEEEC--CCCCCc---------CEEEeCCH
Confidence 3557889999999999999999988 4677777777765 8 8 89999997 677777 88888 99
Q ss_pred HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 102 eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++.++++.+.+. ..++||++++ +.|+.+.+.+|..
T Consensus 204 eELe~a~~~~~~~--------------~~viVEe~I~-GrEitVev~vd~d 239 (493)
T PRK06524 204 RDWDKYAGGIVGQ--------------PEIKVMKRIR-NVEVCIEACVTRH 239 (493)
T ss_pred HHHHHHHHHhcCC--------------CCEEEEeccC-cEEEEEEEEEeCC
Confidence 9999887765421 3589999997 7999998888865
No 57
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=98.94 E-value=5.2e-09 Score=104.42 Aligned_cols=134 Identities=28% Similarity=0.335 Sum_probs=105.3
Q ss_pred chhhhhhhhcccccccchhhhhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecC
Q 022648 2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAG 81 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~g 81 (294)
+.|+-+.|.|--+-+-+-- .|.-++.-++..+|++|.+||||+..+..++++++|..+.++. +.+++|+|++.++.
T Consensus 81 ~~Gl~~~l~~~gi~~FGPs--~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~--~~~~~ViKAdGLAA 156 (788)
T KOG0237|consen 81 VAGLADVLRSAGIPCFGPS--KQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSA--TDKALVIKADGLAA 156 (788)
T ss_pred hhhhhhhhhccCcceeCch--HHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhC--CCcceEEeeccccc
Confidence 4566666666555444432 3444466788899999999999999999999999999999988 65789999998876
Q ss_pred CCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEE
Q 022648 82 GRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII 158 (294)
Q Consensus 82 grgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvi 158 (294)
|| ||.+. +.+|+-+|.++|+... +-|.+| ..+.|||+++ |.|+.+=...|.....|+.
T Consensus 157 --GK---------GViv~~~~~EA~eAv~sIl~~~----~fg~AG---~tvViEE~LE-GeEvS~laftDG~s~~~mp 215 (788)
T KOG0237|consen 157 --GK---------GVIVAKSKEEAFEAVDSILVKK----VFGSAG---KTVVIEELLE-GEEVSFLAFTDGYSVRPLP 215 (788)
T ss_pred --CC---------ceEeeccHHHHHHHHHHHHhhh----hhcccc---ceEehhhhcC-cceEEEEEEecCcccccCC
Confidence 67 89999 9999999999998663 233334 6899999999 7898888888877655654
No 58
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.94 E-value=3.9e-08 Score=106.55 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+....+++|+++|||+|++..+++.+|+.++++++ | ||+++||....| |+ |+.+. |.+++.+++
T Consensus 668 ~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~i--g-yPvIVKP~~~~G--g~---------gv~iv~~~eeL~~~l 733 (1050)
T TIGR01369 668 EDREKFSELLDELGIPQPKWKTATSVEEAVEFASEI--G-YPVLVRPSYVLG--GR---------AMEIVYNEEELRRYL 733 (1050)
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhc--C-CCEEEEECCCCC--CC---------CeEEECCHHHHHHHH
Confidence 456677899999999999999999999999999999 8 899999963322 45 78888 999999998
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++..... .+ ..++||+|++.+.|+.+.+..|..
T Consensus 734 ~~a~~~s--------~~---~~vlVeefI~~G~E~~Vd~l~d~g 766 (1050)
T TIGR01369 734 EEAVEVS--------PE---HPVLIDKYLEDAVEVDVDAVSDGE 766 (1050)
T ss_pred HHHHHhC--------CC---CCEEEeecCCCCeEEEEEEEEeCC
Confidence 8765321 11 469999999989999999998864
No 59
>PRK07206 hypothetical protein; Provisional
Probab=98.93 E-value=4.2e-08 Score=95.40 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCC---eEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK---ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~---PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
-+++..+++|+++|||+|++..+++.+|+.++++++ + + |+|+||. .|.-++ ||.+. |.+|++
T Consensus 107 ~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~--g-~~~~P~VvKP~--~g~gs~---------gv~~v~~~~el~ 172 (416)
T PRK07206 107 RNKAEMINALAEAGLPAARQINTADWEEAEAWLREN--G-LIDRPVVIKPL--ESAGSD---------GVFICPAKGDWK 172 (416)
T ss_pred hCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhc--C-CCCCCEEEeCC--CCCCCC---------CEEEeCCHHHHH
Confidence 578889999999999999999999999999999998 7 7 9999996 222234 89999 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
++++++.+.. .+ .+.....++|||+++ |.|+.+....+
T Consensus 173 ~~~~~~~~~~---~~---~~~~~~~~lvEe~i~-G~E~sv~~~~~ 210 (416)
T PRK07206 173 HAFNAILGKA---NK---LGLVNETVLVQEYLI-GTEYVVNFVSL 210 (416)
T ss_pred HHHHHHHhcc---cc---CCCCCCeEEEEEccc-cEEEEEEEEEE
Confidence 9998876431 11 122235799999998 78998876653
No 60
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.92 E-value=1.6e-08 Score=94.65 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=76.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
++.-++...+++|+++|||+|++.++.+.+++.++.+++ +.+|+|+||. .|+.|+ ||.+. +.+++.
T Consensus 95 ~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~--~~~P~VvKP~--~g~~g~---------GV~~v~~~~~~~ 161 (300)
T PRK10446 95 ARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMV--GGAPLVVKLV--EGTQGI---------GVVLAETRQAAE 161 (300)
T ss_pred HhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHh--CCCCEEEEEC--CCCCcc---------cEEEEcCHHHHH
Confidence 345678899999999999999999999999888888876 4379999996 455566 88888 888877
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecC--CCeeEEEEEEEcC
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS--LVNEMYFAIMLDR 151 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~--~~~El~lgv~~D~ 151 (294)
.+.+.+... + ..++||||++ .+.|+.+.+..+.
T Consensus 162 ~~~~~~~~~----------~---~~~lvQe~I~~~~g~d~rv~vig~~ 196 (300)
T PRK10446 162 SVIDAFRGL----------N---AHILVQEYIKEAQGCDIRCLVVGDE 196 (300)
T ss_pred HHHHHHHhc----------C---CCEEEEeeeccCCCceEEEEEECCE
Confidence 665543211 1 3589999996 4799999987543
No 61
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.92 E-value=4e-08 Score=106.84 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=84.0
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
++.-++..+|++++++|||+|++. .+.+.+|+.++++++ | ||+++||. .||.|+ |+++. +.+|
T Consensus 111 ~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~i--G-yPvIVKP~--~GGGGr---------G~riV~~~eE 176 (1143)
T TIGR01235 111 DQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAI--G-YPVIIKAS--WGGGGR---------GMRVVRSEAD 176 (1143)
T ss_pred HHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHc--C-CCEEEEEC--CCCCCC---------ccEEeCCHHH
Confidence 344678999999999999999975 568999999999999 8 89999996 555566 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.+++++...... . ..|. ..++||++++..+|+.+.+..|..
T Consensus 177 L~~a~~~a~~ea~--~---~fg~--~~vlIEefI~g~reIeVqVlgD~~ 218 (1143)
T TIGR01235 177 VADAFQRAKSEAK--A---AFGN--DEVYVEKLIERPRHIEVQLLGDKH 218 (1143)
T ss_pred HHHHHHHHHHHHH--H---hcCC--CcEEEEEcCCCCeEEEEEEEEeCC
Confidence 9998887654321 0 0121 469999999888999999999975
No 62
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.91 E-value=1.7e-08 Score=99.63 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=72.8
Q ss_pred cCCCHHHHHHHHHHcCCCCC-CeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CH----
Q 022648 28 LNIHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK---- 101 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp-~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~---- 101 (294)
..-++..+|++|+++|||+| .+..+.+.+|+..++.++ + +|+|+||...+| || ||.+. +.
T Consensus 102 ~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~--~-~PvVVKP~~~sg--gk---------GV~v~~~~~~~~ 167 (435)
T PRK06395 102 IETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITS--M-KDVAVKPIGLTG--GK---------GVKVTGEQLNSV 167 (435)
T ss_pred HhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhh--C-CCEEEEeCCCCC--CC---------CeEEecCchhhH
Confidence 44567888999999999997 555777888888888888 7 899999986555 56 78776 32
Q ss_pred HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCC
Q 022648 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (294)
Q Consensus 102 eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~ 153 (294)
+++.+++.++... + ..++||||+. |.|+.+-+..|...
T Consensus 168 ~ea~~~~~~~~~~----------~---~~viIEEfl~-G~E~Svd~~~dg~~ 205 (435)
T PRK06395 168 DEAIRYAIEILDR----------D---GVVLIEKKMT-GEEFSLQAFSDGKH 205 (435)
T ss_pred HHHHHHHHHHhCC----------C---CcEEEEeecC-CceEEEEEEEcCCe
Confidence 3444444433211 1 4699999998 78999999988764
No 63
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.89 E-value=2.4e-08 Score=93.68 Aligned_cols=93 Identities=25% Similarity=0.337 Sum_probs=74.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHH--HHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK--AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~--aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
..-++...+++|+++|||+|++..+++.+|+.+ ..+++ + +|+|+||. .|..++ ||.+. |.+++
T Consensus 108 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--~-~P~viKP~--~g~~s~---------gv~~v~~~~el 173 (326)
T PRK12767 108 ICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGEL--Q-FPLFVKPR--DGSASI---------GVFKVNDKEEL 173 (326)
T ss_pred HHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccC--C-CCEEEEeC--CCCCcc---------CeEEeCCHHHH
Confidence 335678889999999999999999999999887 45677 7 89999995 333345 78888 99988
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.+++++. ..++||++++ +.|+.+.+..|..
T Consensus 174 ~~~~~~~-----------------~~~lvqeyi~-G~e~~v~~~~~~~ 203 (326)
T PRK12767 174 EFLLEYV-----------------PNLIIQEFIE-GQEYTVDVLCDLN 203 (326)
T ss_pred HHHHHhC-----------------CCeEEEeccC-CceEEEEEEEcCC
Confidence 8765532 2689999996 7899999998853
No 64
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.89 E-value=7.8e-08 Score=104.41 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+....+++|+++|||+|++..+++.+|+.++++++ | ||+|+||....| |+ |+.+. |.+++.+++
T Consensus 668 ~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~i--g-yPvvVKP~~~~G--g~---------Gv~iv~~~eeL~~~~ 733 (1066)
T PRK05294 668 EDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEI--G-YPVLVRPSYVLG--GR---------AMEIVYDEEELERYM 733 (1066)
T ss_pred CCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhc--C-CCeEEEeCCCCC--CC---------cEEEECCHHHHHHHH
Confidence 356677899999999999999999999999999999 8 899999963322 45 88888 999999988
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++..... .-..++||+|+++..|+.+.+..|..
T Consensus 734 ~~a~~~s-----------~~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 734 REAVKVS-----------PDHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred HHHHhhC-----------CCCcEEEEecCCCCEEEEEEEEecCC
Confidence 8765321 11469999999966699999998865
No 65
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.88 E-value=1.4e-08 Score=106.21 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=79.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE-c-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l-~-s~eea~ 105 (294)
..-++..+|++|+++|||+|++..+.+.+++.++++++ | ||+|+||. .|+.|+ ||.+ . |++++.
T Consensus 211 i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~i--G-~PvVVKP~--~G~~G~---------GV~~~v~~~~el~ 276 (727)
T PRK14016 211 IACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEI--G-YPVVVKPL--DGNHGR---------GVTVNITTREEIE 276 (727)
T ss_pred HhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHc--C-CCEEEEEC--CCCCCC---------ceEEecCCHHHHH
Confidence 34578899999999999999999999999999999999 8 89999997 555566 8888 4 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
++++.+... + ..++||+|++ +.|+.+.+..+
T Consensus 277 ~a~~~a~~~----------~---~~viVEe~I~-G~d~Rv~Vvgg 307 (727)
T PRK14016 277 AAYAVASKE----------S---SDVIVERYIP-GKDHRLLVVGG 307 (727)
T ss_pred HHHHHHHHh----------C---CeEEEEEecC-CceEEEEEECC
Confidence 988876432 1 4799999998 78888876543
No 66
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.86 E-value=1.3e-07 Score=101.03 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-+++..|++|+++|||+|++..+++.+|+.++++++ + ||+|+||. .+..++ ||.+. |.+|+.++
T Consensus 105 ~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~--~-~PvVVKP~--~g~gS~---------GV~~v~~~~el~~a 170 (887)
T PRK02186 105 CRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGL--T-YPVVVKPR--MGSGSV---------GVRLCASVAEAAAH 170 (887)
T ss_pred hcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhC--C-CCEEEEeC--CCCCCC---------CeEEECCHHHHHHH
Confidence 3567888999999999999999999999999999999 8 89999996 333245 88888 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++.... ...++||||++ |.|+.+.+..+..
T Consensus 171 ~~~~~~~~------------~~~~lvEEfI~-G~E~sVe~i~~~g 202 (887)
T PRK02186 171 CAALRRAG------------TRAALVQAYVE-GDEYSVETLTVAR 202 (887)
T ss_pred HHHHHhcC------------CCcEEEeeccc-CCcEEEEEEEECC
Confidence 88765321 14799999998 6899998877754
No 67
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.86 E-value=1.1e-07 Score=103.17 Aligned_cols=95 Identities=14% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+.+.-+++|+++|||+|++..+++.+|+.++++++ | ||+++||....| |+ |+.+. |.+++++++
T Consensus 669 ~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~i--g-yPvVVKP~~~~G--g~---------gv~iv~~~eeL~~~l 734 (1068)
T PRK12815 669 EDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRI--G-YPVLIRPSYVIG--GQ---------GMAVVYDEPALEAYL 734 (1068)
T ss_pred cCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhc--C-CCEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence 456777899999999999999999999999999999 8 899999963322 45 78888 999999888
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++.... -..++||++++ |.|+.+.+..|..
T Consensus 735 ~~~~s~-------------~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 735 AENASQ-------------LYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred HHhhcC-------------CCCEEEEEeec-CceEEEEEEEcCC
Confidence 775111 14699999996 6899999999875
No 68
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.85 E-value=1.8e-08 Score=107.11 Aligned_cols=94 Identities=22% Similarity=0.349 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE-c-CHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVED 106 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l-~-s~eea~~ 106 (294)
.-++..+|++|+++|||+|++..+++.+++.++++++ | +|+|+||. .|+.|+ ||.+ . |.+++.+
T Consensus 211 a~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~i--g-~PvVVKP~--~g~~G~---------GV~l~v~s~~el~~ 276 (864)
T TIGR02068 211 ACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDL--G-YPVVIKPY--DGNHGR---------GVTINILTRDEIES 276 (864)
T ss_pred HcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHc--C-CCEEEEEC--CCCCcc---------CEEEEeCCHHHHHH
Confidence 3567899999999999999999999999999999999 8 89999997 444456 8888 4 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
+++.+... + ..++||+|++ +.|+.+.+..+
T Consensus 277 a~~~a~~~----------~---~~vlVEefI~-G~e~rvlVv~~ 306 (864)
T TIGR02068 277 AYEAAVEE----------S---SGVIVERFIT-GRDHRLLVVGG 306 (864)
T ss_pred HHHHHHhh----------C---CcEEEEEecc-CCEEEEEEECC
Confidence 88876432 1 4699999998 78998877533
No 69
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.82 E-value=1.2e-08 Score=89.50 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHH
Q 022648 32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGK 110 (294)
Q Consensus 32 E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~ 110 (294)
+....++|+++|||+|++.++.+.+++.++.+++ +.+|+|+||. .|+.|+ ||.+. +.+++.+..+.
T Consensus 4 K~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~--~~~p~ViKp~--~g~~G~---------gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 4 KLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEEL--GGFPVVIKPL--RGSSGR---------GVFLINSPDELESLLDA 70 (190)
T ss_dssp HHHHHHHHHHTT-----EEEESSHHHHHHHHHHH----SSEEEE-S--B----------------EEEESHCHHHHHHH-
T ss_pred HHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHh--cCCCEEEeeC--CCCCCC---------EEEEecCHHHHHHHHHH
Confidence 5567899999999999999999999999999998 4489999996 566677 88887 98888876554
Q ss_pred HhhchhhhhccCCCCcccceEEEEeecCCC--eeEEEEEEEc
Q 022648 111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAIMLD 150 (294)
Q Consensus 111 ~l~~~~~~~q~~~~g~~i~~vLVee~v~~~--~El~lgv~~D 150 (294)
.... . ..+++|+|++.. .++.+-+.-+
T Consensus 71 ~~~~----------~---~~~~~Q~fI~~~~g~d~Rv~Vig~ 99 (190)
T PF08443_consen 71 FKRL----------E---NPILVQEFIPKDGGRDLRVYVIGG 99 (190)
T ss_dssp --------------T---TT-EEEE----SS---EEEEEETT
T ss_pred HHhc----------c---CcceEeccccCCCCcEEEEEEECC
Confidence 3211 1 356999999754 4777766544
No 70
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.76 E-value=7.2e-08 Score=100.40 Aligned_cols=96 Identities=24% Similarity=0.316 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc----CHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~----s~eea~ 105 (294)
-++..+|++|+++|||||++..+++.+++.++...+ +.+|+||||. .++.|+ ||.+. +.+++.
T Consensus 474 ~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~--~g~PVVVKP~--~g~~G~---------GVsi~~~~~~~eel~ 540 (737)
T TIGR01435 474 ENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLF--ENKAIVVKPK--STNYGL---------GITIFKNGFTLEDFQ 540 (737)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHh--cCCCEEEeeC--CCCCcC---------CeEEecCcCCHHHHH
Confidence 368899999999999999999999998888777776 3379999997 566677 78775 478888
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++.+..... + +.++||++++ |.|+.+.+..+..
T Consensus 541 ~Al~~A~~~----------~---~~VLVEefI~-G~EyRv~VIg~kv 573 (737)
T TIGR01435 541 EALNIAFSE----------D---SSVIIEEFLP-GTEYRFFVLNDKV 573 (737)
T ss_pred HHHHHHHhc----------C---CeEEEEeccc-CCEEEEEEECCeE
Confidence 877654322 1 4799999998 8999999886643
No 71
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.74 E-value=1.3e-07 Score=94.80 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=76.6
Q ss_pred cCCCHHHHHHHHHHcCCCCC-CeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH--
Q 022648 28 LNIHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE-- 103 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp-~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee-- 103 (294)
..-++..+|++|+++|||+| ++..+++.+|+.++++.. +|+|+||...++ || ||.+. |.++
T Consensus 106 le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~----~PvVVKP~~~ag--gk---------GV~iv~~~~e~~ 170 (486)
T PRK05784 106 IEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG----GSVAIKPARQAG--GK---------GVKVIADLQAYL 170 (486)
T ss_pred HhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc----CCEEEeeCCCCC--CC---------CEEEECChhHhc
Confidence 44578899999999999997 788889999999888665 699999985544 57 89898 7762
Q ss_pred ---HH----HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 104 ---VE----DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 104 ---a~----~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+. +++++++... .+ .|..-..++|||++. |.|+.+.+..|..
T Consensus 171 ~~~~~ea~~~a~~~~~~~~---~~---~g~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 171 SQEKREALTKSVNDIKEGS---AY---YKDVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred chhHHHHHHHHHHHHHHhH---hh---ccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 22 3445554321 11 122235799999999 7899999998865
No 72
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.71 E-value=3.4e-07 Score=91.53 Aligned_cols=137 Identities=16% Similarity=0.280 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
++.++|.++.+.|+|+.|++ ...+.+++.+.++++ | ||+.||+. +||-|| |.+++ +++++.++
T Consensus 115 dK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~ei--G-yPVlIKAs--aGGGGK---------GMRvv~~~~e~~e~ 180 (645)
T COG4770 115 DKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEI--G-YPVLIKAS--AGGGGK---------GMRVVETPEEFAEA 180 (645)
T ss_pred cHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhc--C-CcEEEEec--cCCCCC---------ceEeecCHHHHHHH
Confidence 46789999999999998886 567899999999999 9 89999997 788899 99999 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~ 187 (294)
++...... ....|. ..++||+|+..-+-+-+-+.-|.. |-++..+ + =+- .++++|.+. +.=+|.
T Consensus 181 l~sarrEA-----~asFGd--drv~iEkyl~~PRHIEiQV~aD~H--GNvv~Lg-E--RdC-SlQRRhQKV---IEEAPa 244 (645)
T COG4770 181 LESARREA-----KASFGD--DRVFIEKYLDKPRHIEIQVFADQH--GNVVHLG-E--RDC-SLQRRHQKV---IEEAPA 244 (645)
T ss_pred HHHHHHHH-----HhhcCC--ceEehhhhcCCCceEEEEEEecCC--CCEEEee-c--ccc-chhhhcchh---hhcCCC
Confidence 87754332 122443 689999999655555588888986 4454433 1 111 233333322 344555
Q ss_pred CCCCHHHHHH
Q 022648 188 NGITDEDAAK 197 (294)
Q Consensus 188 ~gl~~~~a~~ 197 (294)
.+++++.-++
T Consensus 245 P~l~~~~R~a 254 (645)
T COG4770 245 PFLTEETREA 254 (645)
T ss_pred CCCCHHHHHH
Confidence 5677654333
No 73
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.68 E-value=1.6e-07 Score=98.58 Aligned_cols=94 Identities=24% Similarity=0.296 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc----CHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~----s~eea~ 105 (294)
-++..+|++|+++|||+|++.++.+.+++.++.+.+. | +|+|+||. .|+.|+ ||.+. +.+++.
T Consensus 487 ~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~-g-~PvVVKP~--~g~~G~---------GV~~~~~~~~~eel~ 553 (752)
T PRK02471 487 ENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFA-D-KAIVVKPK--STNFGL---------GISIFKEPASLEDYE 553 (752)
T ss_pred hCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhc-C-CCEEEEEC--CCCCcC---------CeEEecCcCCHHHHH
Confidence 4788999999999999999999999999988877641 5 89999997 555677 77663 688888
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
++++..... + ..++|||+++ |.|+.+.+..+
T Consensus 554 ~A~~~a~~~----------~---~~vlVEEfI~-G~E~Rv~Vigg 584 (752)
T PRK02471 554 KALEIAFRE----------D---SSVLVEEFIV-GTEYRFFVLDG 584 (752)
T ss_pred HHHHHHHhc----------C---CcEEEEeccc-CCEEEEEEECC
Confidence 887765422 1 4699999998 89999988744
No 74
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.57 E-value=5.3e-07 Score=91.60 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE-c-CHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVED 106 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l-~-s~eea~~ 106 (294)
.-++..+|++|++.|||||++..+.+.+++.++++++ | |+|+||. .|+.|+ ||.+ . +.+++.+
T Consensus 295 ~~DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~--G--~vVVKP~--~G~~G~---------Gv~v~v~~~~eL~~ 359 (547)
T TIGR03103 295 CDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEH--G--AVVVKPV--RGEQGK---------GISVDVRTPDDLEA 359 (547)
T ss_pred hcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHh--C--CEEEEEC--CCCCCc---------CeEEecCCHHHHHH
Confidence 3478899999999999999999999999999999999 6 6999996 566677 8887 4 9999998
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
+++..... + ..++||++++ +.|+.+.+..+
T Consensus 360 a~~~a~~~----------~---~~vlvEe~i~-G~d~Rv~Vigg 389 (547)
T TIGR03103 360 AIAKARQF----------C---DRVLLERYVP-GEDLRLVVIDF 389 (547)
T ss_pred HHHHHHhc----------C---CcEEEEEecc-CCeEEEEEECC
Confidence 87765322 1 4699999997 78888876544
No 75
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.55 E-value=6.5e-07 Score=82.26 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
...++...+++|+++|||+|++..+.+.+++.++.+.+ + +|+|+||. .|+-|+ ||.+. +.+++.+
T Consensus 84 ~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~--~-~P~vvKP~--~g~~g~---------gv~~v~~~~~l~~ 149 (280)
T TIGR02144 84 ACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEAL--G-YPVVLKPV--IGSWGR---------LVALIRDKDELES 149 (280)
T ss_pred HHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHc--C-CCEEEEEC--cCCCcC---------CEEEECCHHHHHH
Confidence 44567778999999999999999999999999888888 8 89999996 333355 78777 8888877
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCC-CeeEEEEEE
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIM 148 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~-~~El~lgv~ 148 (294)
+.+..... .+.....+++||++++ +.|+.+.+.
T Consensus 150 ~~~~~~~~---------~~~~~~~~ivQefI~~~~~d~~v~vi 183 (280)
T TIGR02144 150 LLEHKEVL---------GGSQHKLFYIQEYINKPGRDIRVFVI 183 (280)
T ss_pred HHHHHHhh---------cCCcCCeEEEEcccCCCCCceEEEEE
Confidence 65431100 0111246899999974 677777665
No 76
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.52 E-value=1.4e-06 Score=79.33 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
...++...+++|+++|||+|++..+.+.+++.++.+++ + +|+|+||. .|+.|+ ||.+. +.+++.+
T Consensus 85 ~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~--~-~p~vvKP~--~g~~g~---------gv~~i~~~~~l~~ 150 (277)
T TIGR00768 85 NAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEI--G-FPVVLKPV--FGSWGR---------LVSLARDKQAAET 150 (277)
T ss_pred HHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhc--C-CCEEEEEC--cCCCCC---------ceEEEcCHHHHHH
Confidence 34667888999999999999999999999999999999 8 89999997 333355 77777 8888887
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCC--eeEEEEE
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAI 147 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~--~El~lgv 147 (294)
+.+.+... +..-..+++||++++. .++.+-+
T Consensus 151 ~~~~~~~~----------~~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 151 LLEHFEQL----------NGPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred HHHHHHHh----------cccCCcEEEEeeecCCCCceEEEEE
Confidence 66553211 0001469999999853 3554444
No 77
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.42 E-value=3.6e-06 Score=83.33 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.+..+|++++++|+|+.+++ ...|.+++.+.+.++ | ||+.+|+. +||-|| |.++. +++|.++.
T Consensus 111 ~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eI--g-yPvMiKa~--~GGGGk---------GMria~~~~ef~~~ 176 (670)
T KOG0238|consen 111 DKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREI--G-YPVMIKAT--AGGGGK---------GMRIAWSEEEFEEG 176 (670)
T ss_pred chHHHHHHHHhcCCccccCcccccccHHHHHHHHHhc--C-CcEEEEec--cCCCCc---------ceEeecChHHHHHH
Confidence 36789999999999998874 668899999999999 9 89999997 788899 99999 99998887
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEec
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s 161 (294)
++..-.... + ..| -+++|+|+|++.-+-+-+-+.-|.. |-.+-++
T Consensus 177 ~~~ak~Ea~--~---sFG--dd~~llEkfi~npRHiEvQv~gD~h--Gnav~l~ 221 (670)
T KOG0238|consen 177 LESAKQEAA--K---SFG--DDGMLLEKFIDNPRHIEVQVFGDKH--GNAVHLG 221 (670)
T ss_pred HHHHHHHHH--h---hcC--cchhhHHHhccCCceEEEEEEecCC--CcEEEec
Confidence 776433211 1 123 2789999999765555577777864 5555443
No 78
>PRK06849 hypothetical protein; Provisional
Probab=98.40 E-value=4.5e-06 Score=80.79 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=65.8
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
+.-++..+++..++++++.|||+|++..+++.+++.++..+.. + +|+|+||.. ++.+ .||.+. +.+
T Consensus 109 ~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~-~-~P~vlKP~~--~~~~---------~~v~~~~~~~ 175 (389)
T PRK06849 109 ELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTP-H-TPYVLKPIY--SRFV---------RRVDLLPKEA 175 (389)
T ss_pred HHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCC-C-CcEEEEeCc--ccCC---------CeEEEecCHH
Confidence 4455667789999999999999999999999999988776641 5 899999962 2212 266666 632
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEE-EEEEcC
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF-AIMLDR 151 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~l-gv~~D~ 151 (294)
++. .+. . . .-+.+++||+++ |.|+.+ ++.+|+
T Consensus 176 ~l~----~~~-~----------~-~~~~~ivQe~I~-G~e~~~~~~~~~G 208 (389)
T PRK06849 176 ALK----ELP-I----------S-KDNPWVMQEFIQ-GKEYCSYSIVRSG 208 (389)
T ss_pred Hhc----ccc-c----------C-CCCCeEEEEEec-CCeEEEEEEEECC
Confidence 221 110 0 0 113589999999 556544 444443
No 79
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=4.8e-06 Score=79.28 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=73.6
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
|.-+..-.+..+.++|++.|+|+|++.++.+++++....++.. | +|+|+||- .|.-|+ ||.+. +.+
T Consensus 112 ~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~-g-~pvVlKp~--~Gs~G~---------gV~~v~~~d 178 (318)
T COG0189 112 QSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHL-G-FPVVLKPL--DGSGGR---------GVFLVEDAD 178 (318)
T ss_pred HHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhc-C-CCEEEeeC--CCCCcc---------ceEEecCCC
Confidence 3344445677889999999999999999999877666655531 7 89999985 444566 78888 777
Q ss_pred -HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 103 -EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 103 -ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
++.+..+.+.+.. -+.+++|+|++.....+..+....
T Consensus 179 ~~l~~~~e~~~~~~------------~~~~ivQeyi~~~~~~~rrivv~~ 216 (318)
T COG0189 179 PELLSLLETLTQEG------------RKLIIVQEYIPKAKRDDRRVLVGG 216 (318)
T ss_pred hhHHHHHHHHhccc------------cceEehhhhcCcccCCcEEEEEeC
Confidence 7777766654331 146899999987665555554443
No 80
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.34 E-value=1.4e-05 Score=82.85 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=100.0
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 26 RRLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 26 ~~~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
.+|.=++..|+.+-.+.|+||-++. .+.+.+|+.+.+++. | ||+.+|+. .||-|+ |.+++ +++
T Consensus 116 ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~--g-yPvmiKA~--~GGGGR---------GMR~vr~~~ 181 (1149)
T COG1038 116 LDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEY--G-YPVMIKAA--AGGGGR---------GMRVVRSEA 181 (1149)
T ss_pred HHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhc--C-CcEEEEEc--cCCCcc---------ceeeecCHH
Confidence 3444567889999999999996654 567899999999999 9 89999997 676677 89999 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEE
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV 182 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~ 182 (294)
++.+++.+.-.... ...|. ..|+||+++...+-+-+-+.-|.. +..|-+|- =.-. ++++|. ++ +
T Consensus 182 ~l~~~~~~AksEAk-----aAFG~--~eVyvEk~ve~pkHIEVQiLgD~~-GnvvHLfE--RDCS---vQRRhQ-KV--V 245 (1149)
T COG1038 182 DLAEAFERAKSEAK-----AAFGN--DEVYVEKLVENPKHIEVQILGDTH-GNVVHLFE--RDCS---VQRRHQ-KV--V 245 (1149)
T ss_pred HHHHHHHHHHHHHH-----HhcCC--CcEEhhhhhcCcceeEEEEeecCC-CCEEEEee--cccc---hhhccc-ee--E
Confidence 99999888644321 12343 679999999765555588888876 23444542 1111 233333 33 5
Q ss_pred eecCCCCCCHHHHHH
Q 022648 183 PIDVFNGITDEDAAK 197 (294)
Q Consensus 183 ~l~p~~gl~~~~a~~ 197 (294)
.++|...++++.-.+
T Consensus 246 E~APa~~L~~~~R~~ 260 (1149)
T COG1038 246 EVAPAPYLSPELRDE 260 (1149)
T ss_pred EecCCCCCCHHHHHH
Confidence 788877788764333
No 81
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.34 E-value=3.1e-06 Score=79.71 Aligned_cols=119 Identities=19% Similarity=0.153 Sum_probs=79.3
Q ss_pred hhhhcccccccchhhhhhhcccCCCHHHHHHHHH-HcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCC
Q 022648 7 NKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMA-KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85 (294)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~L~E~~ak~lL~-~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK 85 (294)
-+|-+.-++|--++.+-+. ..+-..-+++.+ +.|+|+.++.++.|.+|..++++.+ | ||+|+||- .+..||
T Consensus 92 ~elE~~G~~VVP~ArAt~l---tMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~i--G-fPcvvKPv--MSSSGk 163 (394)
T COG0027 92 VELEEEGYTVVPNARATKL---TMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKI--G-FPCVVKPV--MSSSGK 163 (394)
T ss_pred HHHHhCCceEccchHHHHh---hhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHc--C-CCeecccc--cccCCC
Confidence 3444555666655533221 122222233322 2499999999999999999999999 9 89999996 233466
Q ss_pred cccccCCcCcEEEcCHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 86 GTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 86 ~~~~~sd~GGV~l~s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
|...+.++|++.++++...... ++ .-..|+||+++++..|+.+=..+.
T Consensus 164 --------Gqsvv~~~e~ve~AW~~A~~g~-----R~----~~~RVIVE~fv~fd~EiTlLtvr~ 211 (394)
T COG0027 164 --------GQSVVRSPEDVEKAWEYAQQGG-----RG----GSGRVIVEEFVKFDFEITLLTVRA 211 (394)
T ss_pred --------CceeecCHHHHHHHHHHHHhcC-----CC----CCCcEEEEEEecceEEEEEEEEEE
Confidence 3444449999999988765432 11 125799999999888876654443
No 82
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=2.7e-06 Score=80.94 Aligned_cols=187 Identities=18% Similarity=0.137 Sum_probs=110.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCC----HHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVAS----VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s----~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
........|.++++.|+|++++...+. ....++....+ + +|++|||.-. |..- |+..+ +.+
T Consensus 100 ~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l--~-~p~~Vkp~~~--gSSv---------g~~~v~~~~ 165 (317)
T COG1181 100 GAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGL--G-FPLFVKPARE--GSSV---------GRSPVNVEG 165 (317)
T ss_pred hcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhccc--C-CCEEEEcCCc--ccee---------eEEEeeecc
Confidence 445677899999999999999988864 23345566667 7 8999999622 2112 55555 777
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC--CCceEEEecCCCCceeeeccccCCCeEE
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK--TAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~--~~gPvil~s~~GGv~vE~l~~~~pd~v~ 180 (294)
+.+++.+....+. +.+++|+++. ++|+.+++..+.. ..-|+.-+-+.|
T Consensus 166 d~~~~~e~a~~~d-------------~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~---------------- 215 (317)
T COG1181 166 DLQSALELAFKYD-------------RDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKG---------------- 215 (317)
T ss_pred chHHHHHHHHHhC-------------CceeeccCCC-cceEEEEecCCcccceecCceEEecCC----------------
Confidence 7777665554332 5689999999 9999999998855 112222111122
Q ss_pred EEeecCCCCCCHHHHHHHH-Hh------CCCCcccHHHHHHHHHHHHHhhc------------c--CCCcEEEeeceeEe
Q 022648 181 KVPIDVFNGITDEDAAKVV-DG------LAPKVADRNDAIEQVKKLYKLFC------------E--SDCTLLEVSMNFYI 239 (294)
Q Consensus 181 ~~~l~p~~gl~~~~a~~~~-~~------lg~~~~~~~~l~~~l~~L~~l~~------------~--~d~~~LEINPL~v~ 239 (294)
..+.++++..+. .. -+++.+.-+.+.++..+.++.+. + .+..++||||....
T Consensus 216 -------~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~ 288 (317)
T COG1181 216 -------EEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGM 288 (317)
T ss_pred -------CeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCC
Confidence 112222333322 10 02333334444444444444433 2 45778999999873
Q ss_pred cCCcEEEEEEEEec--hhhHHHHHhhhh
Q 022648 240 SLVLLICMSLLVGG--QVELVIHLVGGS 265 (294)
Q Consensus 240 ~dg~~valDa~i~~--~~~~~~~~~~~~ 265 (294)
...+++..-+.-.| ..+++..+++.+
T Consensus 289 t~~sl~P~~~~~~gi~~~~L~~~~~e~a 316 (317)
T COG1181 289 TAMSLFPKAAAAAGISFAILVLRFVELA 316 (317)
T ss_pred cccccchhhHHHcCCCHHHHHHHHHhhc
Confidence 33334444444444 377777776643
No 83
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.26 E-value=9.5e-06 Score=78.44 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+....|++|+++|||+|++ +.++++ + + +|+|+||. .+..|| |+.+. |.+++.+++
T Consensus 122 ~dK~~~k~~L~~aGIp~p~~--~~~~~~-------i--~-~PvIVKp~--~g~ggk---------Gv~i~~s~~El~~~~ 178 (358)
T PRK13278 122 ADRDKERKLLEEAGIRIPRK--YESPED-------I--D-RPVIVKLP--GAKGGR---------GYFIAKSPEEFKEKI 178 (358)
T ss_pred cCHHHHHHHHHHcCCCCCCE--eCCHHH-------c--C-CCEEEEeC--CCCCCC---------CeEEeCCHHHHHHHH
Confidence 34667889999999999985 556554 5 6 79999995 333466 88899 999999999
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
++++++.. .+. ...++||||+. |.|+++-+...+
T Consensus 179 ~~l~~~~~-------~~~-~~~~iIEEfI~-G~e~sv~~f~s~ 212 (358)
T PRK13278 179 DKLIERGL-------ITE-VEEAIIQEYVV-GVPYYFHYFYSP 212 (358)
T ss_pred HHHHhccc-------cCC-CCeEEEEecCC-CcEEEEEEEEec
Confidence 98865421 122 46899999998 789999988764
No 84
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.20 E-value=1.1e-05 Score=77.09 Aligned_cols=105 Identities=26% Similarity=0.342 Sum_probs=74.1
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhC-CCCCeEEEEEeeecCCCCCcccccCCcCcEEEc--C
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAF-PDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--K 100 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~-~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~--s 100 (294)
+.-...-+++...+.+++.|||+|++..++|.+|.+++.+++. ++ .|+.+||..-.||+ |.++- +
T Consensus 100 ~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~-~~~CvKP~~g~gg~-----------GFr~l~~~ 167 (329)
T PF15632_consen 100 ETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPG-QPLCVKPAVGIGGR-----------GFRVLDES 167 (329)
T ss_pred HHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCC-ceEEEecccCCCcc-----------eEEEEccC
Confidence 4444556788899999999999999999999999999999873 23 46999996333332 44444 3
Q ss_pred HHHHHHHHH------------HHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 101 KEEVEDLAG------------KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 101 ~eea~~a~~------------~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
.++.....+ +.+.. .......+|.||++ |.|+.|=+..+.
T Consensus 168 ~~~l~~l~~~~~~~i~~~~~~~~l~~----------~~~~~~llvMeyL~-G~EySVD~l~~~ 219 (329)
T PF15632_consen 168 RDELDALFEPDSRRISLDELLAALQR----------SEEFPPLLVMEYLP-GPEYSVDCLADE 219 (329)
T ss_pred cchHHHhcCCCcceeCHHHHHHHHhc----------cCCCCCcEEecCCC-CCeEEEEEEecC
Confidence 343333222 11111 12357899999999 899999988887
No 85
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.96 E-value=0.00014 Score=74.47 Aligned_cols=166 Identities=17% Similarity=0.327 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
++..++.+--+.|+|+.++. .+++.+||.+++++. | +|+++|+. .||-|+ |++++ +.|++.++
T Consensus 147 DKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~y--G-~PvI~KAA--yGGGGR---------GmRvVr~~e~vee~ 212 (1176)
T KOG0369|consen 147 DKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEY--G-LPVIIKAA--YGGGGR---------GMRVVRSGEDVEEA 212 (1176)
T ss_pred hHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhc--C-CcEEEeec--ccCCCc---------ceEEeechhhHHHH
Confidence 35678888889999998775 568999999999999 9 89999997 455566 88999 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEE-EecCCCCceeeeccccCCCeEEEEeecC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvi-l~s~~GGv~vE~l~~~~pd~v~~~~l~p 186 (294)
+++.....+. ..|. ..+.||+|++.-+-+-+-+.-|.. |-++ ++ +-.-. +++++. ++ ..++|
T Consensus 213 f~Ra~SEA~a-----aFGn--G~~FvEkF~ekPrHIEvQllgD~~--GNvvHLy--ERDCS---vQRRHQ-KV--VEiAP 275 (1176)
T KOG0369|consen 213 FQRAYSEALA-----AFGN--GTLFVEKFLEKPRHIEVQLLGDKH--GNVVHLY--ERDCS---VQRRHQ-KV--VEIAP 275 (1176)
T ss_pred HHHHHHHHHH-----hcCC--ceeeHHhhhcCcceeEEEEecccC--CCEEEEe--ecccc---hhhhhc-ce--eEecc
Confidence 9987665431 1232 357899999755555577777765 4443 33 21112 222332 33 46777
Q ss_pred CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeecee
Q 022648 187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNF 237 (294)
Q Consensus 187 ~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~ 237 (294)
...+.++ +|-+++++.|+...-- .+...| .....+||||-+
T Consensus 276 A~~Lp~~vR~~~~~davklAk~vgY~NAGT----------vEFLvD~~g~hYFIEvN~Rl 325 (1176)
T KOG0369|consen 276 AKTLPPEVRDAILTDAVKLAKHVGYENAGT----------VEFLVDQKGRHYFIEVNPRL 325 (1176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCcccCCc----------eEEEEccCCCEEEEEecCce
Confidence 6666654 3444455555432211 011223 234569999944
No 86
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.55 E-value=0.00068 Score=65.60 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHH
Q 022648 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKM 111 (294)
Q Consensus 33 ~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~ 111 (294)
....++|.++|||+|+... ++ .++ + +|++|||....|.-++ |+.++ |++|+.+.+.++
T Consensus 128 k~~yk~L~~aGI~~Pk~~~--~p-------~eI--d-~PVIVKp~~asG~~sr---------G~f~a~s~eEl~~~a~~l 186 (366)
T PRK13277 128 KNYYWLLEKAGIPYPKLFK--DP-------EEI--D-RPVIVKLPEAKRRLER---------GFFTASSYEDFYEKSEEL 186 (366)
T ss_pred HHHHHHHHHcCCCCceeec--Cc-------ccc--C-ccEEEEECCCCCcccc---------CeEeeCCHHHHHHHHHhh
Confidence 3444599999999998766 33 346 6 7999999733321145 77788 999999888877
Q ss_pred hhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 112 LGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 112 l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.....++ ...++..+|||++. |.|+++-+..|+-
T Consensus 187 ~~~g~I~------~~~~~~~iIQEyI~-G~ey~~d~F~s~l 220 (366)
T PRK13277 187 IKAGVID------REDLKNARIEEYVI-GAHFNFNYFYSPI 220 (366)
T ss_pred hhcCccc------ccccccceeEeccC-CCEEEEEEEEecc
Confidence 6432221 11236778999998 8899999998874
No 87
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=97.52 E-value=1.3e-05 Score=79.10 Aligned_cols=155 Identities=18% Similarity=0.070 Sum_probs=103.6
Q ss_pred CeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCC------Cee
Q 022648 70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL------VNE 142 (294)
Q Consensus 70 ~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~------~~E 142 (294)
...|.|++.+...|+| .|-|.++ +-.+..++.+.+.+... +..+.-| ..+-+.|||++++ -.|
T Consensus 80 ~rsv~k~~m~~~k~~k-------i~lvAiiAegvpe~~~~kl~~~a~~--k~~~iiG-PaTvggVePg~fkignt~g~~d 149 (600)
T KOG1254|consen 80 TRSVAKPDMLALKRGK-------IGLVAIIAEGVPEADTRKLRAGAEV--KGVGIIG-PATVGGVEPGVFKIGNTGGMMD 149 (600)
T ss_pred hhhhhcchHHHhhcCc-------ceEEEEEecCCcHHHHHHHHhcccc--ccceEEe-eeeeccccCCccccCCCCcchh
Confidence 4578999888888888 6889998 55555555555544421 1111111 2456899999976 579
Q ss_pred EEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCC---CCCCHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 022648 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF---NGITDEDAAKVVDGLAPKVADRNDAIEQVKKL 219 (294)
Q Consensus 143 l~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~---~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L 219 (294)
.|+.+..+|. |-++.+|..|||++|...+. .++.-.+.. .+=+.+-..-++++ ++....+.+.++++.|
T Consensus 150 nil~~klyR~--Gsv~~vS~sGGmsnE~nn~i----srtt~g~~egiaiggd~~pgSTl~dh--i~r~q~~~~vk~Iv~L 221 (600)
T KOG1254|consen 150 NILNSKLYRP--GSVIYVSRSGGMSNELNNII----SRTTDGPYEGIAIGGDRYPGSTLIDH--IPREQHDPLVKFIVVL 221 (600)
T ss_pred hhhhhcccCC--ccEEEEecCCCcchhhhhhh----hheeccceeeeeccCCCccCchHhhh--hhhhhccChhheEEee
Confidence 9999999998 78999999999999997643 333222110 01111222223333 2234556678899999
Q ss_pred HHhhccCCCcEEEee-------ceeEecCC
Q 022648 220 YKLFCESDCTLLEVS-------MNFYISLV 242 (294)
Q Consensus 220 ~~l~~~~d~~~LEIN-------PL~v~~dg 242 (294)
+.++.+.+.+.+|+| |++.-.-|
T Consensus 222 gevgg~~ey~~~e~~k~g~~tkPlVaw~~g 251 (600)
T KOG1254|consen 222 GEVGGDEEYTFLEANKEGKITKPLVAWCIG 251 (600)
T ss_pred hhhcccceeehhhhhhcCCccCCEEEEecC
Confidence 999999999999999 98774443
No 88
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.49 E-value=0.0003 Score=60.18 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~ 109 (294)
+++..+++|++.|||+|........+ .. . +|+|+||. .|.-|. |+.+. +.+++.....
T Consensus 3 dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~--~-~~~viKp~--~G~Gg~---------~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 3 DKLKTYKFLKELGIPVPTTLRDSEPE-------PI--D-GPWVIKPR--DGAGGE---------GIRIVDSEDELEEFLN 61 (161)
T ss_dssp SHHHHHHHHTTT-S--------EESS-----------S-SSEEEEES--S----------------B--SS--TTE----
T ss_pred CHHHHHHHHHccCCCCCCcccccccc-------cc--C-CcEEEEeC--CCCCCC---------CeEEECCchhhccccc
Confidence 56788999999999999322221111 12 3 79999996 221133 55555 5554443211
Q ss_pred HHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 110 ~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
...++||+++ |.++.+.+..+..
T Consensus 62 -------------------~~~i~Qe~i~-G~~~Sv~~l~~~~ 84 (161)
T PF02655_consen 62 -------------------KLRIVQEFIE-GEPYSVSFLASGG 84 (161)
T ss_dssp ----------------------EEEE----SEEEEEEEEE-SS
T ss_pred -------------------cceEEeeeeC-CEEeEEEEEEeCC
Confidence 1128999998 8999999998876
No 89
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.48 E-value=7.1e-05 Score=78.77 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=103.1
Q ss_pred HHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchh
Q 022648 38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQIL 116 (294)
Q Consensus 38 lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~ 116 (294)
-|.+-+.++.++..+++.|||.++++++ | ||+++++...-||-|. ... |.|++.+.+...++..
T Consensus 505 am~ei~e~ia~s~a~~sie~al~aae~l--~-ypvivRaayalgglgS-----------gfa~n~eeL~~l~~~a~a~s- 569 (1435)
T KOG0370|consen 505 ALNEINEKIAPSEAVSTIEEALEAAERL--G-YPVIVRAAYALGGLGS-----------GFANNEEELQDLAAQALALS- 569 (1435)
T ss_pred HHHhhcccccchhhHhHHHHHHHHHHhc--C-cHHHHHHHHHhcCccc-----------cccccHHHHHHHHhhccccC-
Confidence 3566799999999999999999999999 8 8999998654455443 256 8899988777665542
Q ss_pred hhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCCCCCCHHH--
Q 022648 117 VTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDED-- 194 (294)
Q Consensus 117 ~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~~~-- 194 (294)
++++||+.+.+++|.--.+.||... -+|.+..+ -+.+.+.-++.|.+ -++|.+.+++++
T Consensus 570 ------------~QilvekSlkGwkevEyevvrDa~~--nciTvcnm--en~DplgihtGdSi---Vvapsqtlsd~ey~ 630 (1435)
T KOG0370|consen 570 ------------PQILVEKSLKGWKEVEYEVVRDAYD--NCITVCNM--ENFDPLGIHTGDSI---VVAPSQTLSDEEYQ 630 (1435)
T ss_pred ------------ceeeehhhhccccceEEEEEecccc--chhhhcCC--cccCcceeeccceE---EEeeccccChHHHH
Confidence 6899999999999999999999864 44555422 34555555666665 478888888864
Q ss_pred -----HHHHHHhCCCCcccH
Q 022648 195 -----AAKVVDGLAPKVADR 209 (294)
Q Consensus 195 -----a~~~~~~lg~~~~~~ 209 (294)
|.++++++|+.|++.
T Consensus 631 mlrttaikVirhlgvvGEcn 650 (1435)
T KOG0370|consen 631 MLRTTAIKVIRHLGVVGECN 650 (1435)
T ss_pred HHHhcchhheeccCCccccc
Confidence 334566888888755
No 90
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.46 E-value=0.0059 Score=58.28 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=38.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCC
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK 85 (294)
..=++..+..+|+++|||+|++..+.+.+...+...++..+..|+|+||. .|..|+
T Consensus 34 ~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl--~Gs~Gr 89 (317)
T TIGR02291 34 LVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPA--QGSGGK 89 (317)
T ss_pred ccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEEC--CCCCcc
Confidence 33458888999999999999999887765443333333112137999996 555677
No 91
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.35 E-value=0.0018 Score=71.04 Aligned_cols=134 Identities=18% Similarity=0.322 Sum_probs=93.0
Q ss_pred eCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccce
Q 022648 52 VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSK 130 (294)
Q Consensus 52 a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~ 130 (294)
+++++|..++++.+ | ||+.+|+. -||-|| |++-+ +.|+....+++..+.. +| ..
T Consensus 225 v~~~eegLeaae~I--G-fPvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~Ev--------PG---SP 279 (2196)
T KOG0368|consen 225 VRNVEEGLEAAEKI--G-FPVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNEV--------PG---SP 279 (2196)
T ss_pred cCCHHHHHHHHHhc--C-CceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhhC--------CC---Cc
Confidence 46889999999999 9 89999997 677799 99999 9999999999987653 35 35
Q ss_pred EEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecCCCCCCHHHHHHHHHhCC---CCcc
Q 022648 131 VYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA---PKVA 207 (294)
Q Consensus 131 vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~~~a~~~~~~lg---~~~~ 207 (294)
+.+.+-+.+.+-+-+-+.-|. ||-+|..... | +.+ ...-++++.+.. .+++
T Consensus 280 IFlMK~a~~ARHlEVQlLaDq--YGn~IsLfgR---D--------------CSi-------QRRhQKIIEEAPatIap~e 333 (2196)
T KOG0368|consen 280 IFLMKLADQARHLEVQLLADQ--YGNVISLFGR---D--------------CSI-------QRRHQKIIEEAPATIAPPE 333 (2196)
T ss_pred eeeeecccCcceeeeehhhhh--cCCEeEeecc---c--------------chH-------HHHHHHHHhhCCcccCCHH
Confidence 677777777776667777775 4666533200 1 111 112445555543 2456
Q ss_pred cHHHHHHHHHHHHHhhc--------------cCCCcEEEeece
Q 022648 208 DRNDAIEQVKKLYKLFC--------------ESDCTLLEVSMN 236 (294)
Q Consensus 208 ~~~~l~~~l~~L~~l~~--------------~~d~~~LEINPL 236 (294)
.++.+.+...+|.++.. +.....||+||-
T Consensus 334 tf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPR 376 (2196)
T KOG0368|consen 334 TFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPR 376 (2196)
T ss_pred HHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCcc
Confidence 77777888888887754 233456999993
No 92
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=97.03 E-value=0.0034 Score=60.18 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHcC-------CCCCCeeeeCCHHHHH---HHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc
Q 022648 30 IHEYQGAELMAKYG-------INVPKGLAVASVDEVK---KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99 (294)
Q Consensus 30 L~E~~ak~lL~~yG-------Ipvp~~~~a~s~eEa~---~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~ 99 (294)
.+.....++|++.| ||+|++.++.+.+.+. ....++ + +|+|+||..-+ |..+ ..++.+.
T Consensus 106 ~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l--~-~P~V~KPl~g~-Gss~-------gh~m~lv 174 (328)
T PLN02941 106 HNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGL--K-FPLVAKPLVAD-GSAK-------SHKMSLA 174 (328)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcC--C-CCEEEeecccC-CCcc-------ccceEEe
Confidence 44566778889899 9999999999987644 333456 7 89999996432 2222 3478888
Q ss_pred -CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCC
Q 022648 100 -KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLV 140 (294)
Q Consensus 100 -s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~ 140 (294)
+++++.+ ++ ..+++|||++++
T Consensus 175 ~~~~~L~~-----l~---------------~p~~lQEfVnh~ 196 (328)
T PLN02941 175 YDQEGLSK-----LE---------------PPLVLQEFVNHG 196 (328)
T ss_pred cCHHHHHh-----cC---------------CcEEEEEecCCC
Confidence 8876664 11 148999999764
No 93
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=96.74 E-value=0.0046 Score=58.33 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=62.8
Q ss_pred HHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEcCHHHHHHHHHHHhhc
Q 022648 36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQ 114 (294)
Q Consensus 36 k~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~s~eea~~a~~~~l~~ 114 (294)
.+.-.++|+|.|+.+.++|..++ .+.++ . +|+++||. .|| ++. ...+-.+...|.||...++.+..+.
T Consensus 119 Y~ra~elgl~~P~Ty~v~S~~d~--~~~el--~-FPvILKP~--mgg~~~~----~araKa~~a~d~ee~k~a~~~a~ee 187 (415)
T COG3919 119 YNRAEELGLPYPKTYLVNSEIDT--LVDEL--T-FPVILKPG--MGGSVHF----EARAKAFTAADNEEMKLALHRAYEE 187 (415)
T ss_pred HHHHHHhCCCCcceEEecchhhh--hhhhe--e-eeEEecCC--CCCccee----ehhhheeeccCHHHHHHHHHHHHHh
Confidence 34456789999999999976654 45667 5 89999995 222 211 0111133333778888777665433
Q ss_pred hhhhhccCCCCcccceEEEEeecCCCeeEEE--EEEEcCCCCceEEEe
Q 022648 115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF--AIMLDRKTAGPIIIG 160 (294)
Q Consensus 115 ~~~~~q~~~~g~~i~~vLVee~v~~~~El~l--gv~~D~~~~gPvil~ 160 (294)
.+ .++++||+|+|+|.|=.. ....|.. .||..|
T Consensus 188 ------ig-----pDnvvvQe~IPGGgE~qfsyaAlw~~g--~pvaef 222 (415)
T COG3919 188 ------IG-----PDNVVVQEFIPGGGENQFSYAALWDKG--HPVAEF 222 (415)
T ss_pred ------cC-----CCceEEEEecCCCCcccchHHHHHhCC--Cchhhh
Confidence 12 378999999998876333 2334432 466444
No 94
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.029 Score=53.37 Aligned_cols=90 Identities=24% Similarity=0.346 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHH
Q 022648 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKM 111 (294)
Q Consensus 33 ~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~ 111 (294)
.--+.+|.++||+.|+ ...+++|+ + .||++|.....| |+ |-.++ |++|..+-++++
T Consensus 126 ~~~~~lLekAgi~~P~--~~~~PeeI---------d-r~VIVK~pgAkg--gR---------GyFiA~s~eef~ek~e~l 182 (361)
T COG1759 126 KLEYKLLEKAGLRIPK--KYKSPEEI---------D-RPVIVKLPGAKG--GR---------GYFIASSPEEFYEKAERL 182 (361)
T ss_pred hhHHHHHHHcCCCCCc--ccCChHHc---------C-CceEEecCCccC--Cc---------eEEEEcCHHHHHHHHHHH
Confidence 3457899999999997 45678774 5 699999875433 66 66688 999999999999
Q ss_pred hhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 112 LGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 112 l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+....++ .+.+++..|||++- |.-+|+-....+-
T Consensus 183 ~~~gvi~------~edlkna~IeEYv~-G~~f~~~yFyS~i 216 (361)
T COG1759 183 LKRGVIT------EEDLKNARIEEYVV-GAPFYFHYFYSPI 216 (361)
T ss_pred HHcCCcc------hhhhhhceeeEEee-ccceeeeeeeccc
Confidence 8765433 23457889999987 6677777665555
No 95
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=96.05 E-value=0.026 Score=60.20 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=76.1
Q ss_pred HHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhc
Q 022648 36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ 114 (294)
Q Consensus 36 k~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~ 114 (294)
.++|.+.||..|+|+-.++.+||..+|++. | ||+.++|...-.| - ..-+. +.+++....++...-
T Consensus 1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~V--g-YP~lvRPSYVLSG--a---------AMnv~~~~~dl~~~L~~A~~v 1103 (1435)
T KOG0370|consen 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKV--G-YPVLVRPSYVLSG--A---------AMNVVYSESDLKSYLEQASAV 1103 (1435)
T ss_pred HHHHHHcCCCchhhhhhccHHHHHHHHHhc--C-CceEecccceecc--h---------hhhhhhcHHHHHHHHHHHhhc
Confidence 478899999999999999999999999999 9 8999999743221 1 23334 777777655543211
Q ss_pred hhhhhccCCCCcccceEEEEeecCCCeeEEEEE-EEcCCCCceEEEecCCCCceeeeccccCCCeE
Q 022648 115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI-MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMI 179 (294)
Q Consensus 115 ~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv-~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v 179 (294)
+ +=+.|.+.+|+...+|+-+-. ..|.. -.+..+| -.||.-..+..|..
T Consensus 1104 ---s--------~dhPVVisKfie~AkEidvDAVa~~G~--~~~haiS----EHvEnAGVHSGDAt 1152 (1435)
T KOG0370|consen 1104 ---S--------PDHPVVISKFIEGAKEIDVDAVASDGK--VLVHAIS----EHVENAGVHSGDAT 1152 (1435)
T ss_pred ---C--------CCCCEEhHHhhcccceechhhhccCCe--EEEEehh----hhhhcccccCCcee
Confidence 1 115689999999899976643 33332 2333344 24666665556654
No 96
>PRK12458 glutathione synthetase; Provisional
Probab=95.91 E-value=0.057 Score=51.85 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=49.3
Q ss_pred CCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH--HHHHHHHHHhhchhhhhc
Q 022648 44 INVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE--EVEDLAGKMLGQILVTKQ 120 (294)
Q Consensus 44 Ipvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e--ea~~a~~~~l~~~~~~~q 120 (294)
+++|++.+..+.+++.++.++. +..|+|+||. .|..|+ ||.+. +.+ .+.+..+.+..
T Consensus 139 ~~vP~T~v~~~~~~~~~~~~~~--~~~pvVvKPl--~G~gG~---------gV~~v~~~~~~~~~~ile~~~~------- 198 (338)
T PRK12458 139 EVRPTTHISRNKEYIREFLEES--PGDKMILKPL--QGSGGQ---------GVFLIEKSAQSNLNQILEFYSG------- 198 (338)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc--CCCeEEEEEC--CCCCcc---------CeEEEecCChhhHHHHHHHHhh-------
Confidence 6899999999999999998888 6235999996 333344 66555 333 23333332211
Q ss_pred cCCCCcccceEEEEeecCC--CeeEEEEE
Q 022648 121 TGPQGKIVSKVYLCEKLSL--VNEMYFAI 147 (294)
Q Consensus 121 ~~~~g~~i~~vLVee~v~~--~~El~lgv 147 (294)
. ..+++|||++. +.++.+-+
T Consensus 199 ----~---~~~ivQeyI~~~~~gDiRv~v 220 (338)
T PRK12458 199 ----D---GYVIAQEYLPGAEEGDVRILL 220 (338)
T ss_pred ----C---CCEEEEEcccCCCCCCEEEEE
Confidence 0 36899999973 34555443
No 97
>PRK05246 glutathione synthetase; Provisional
Probab=95.47 E-value=0.14 Score=48.52 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc--CHHHHHHHHHHHhhchhhhhccC
Q 022648 45 NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTG 122 (294)
Q Consensus 45 pvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~--s~eea~~a~~~~l~~~~~~~q~~ 122 (294)
++|++.+.++.+++.++.++. + |+|+||. .|..|+ ||... +..++....+. +...
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~--~--~vVlKP~--~G~~G~---------gV~~i~~~~~~~~~~~~~-l~~~------- 190 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEH--G--DIILKPL--DGMGGA---------GIFRVKADDPNLGSILET-LTEH------- 190 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHC--C--CEEEEEC--CCCCcc---------ceEEEeCCCccHHHHHHH-HHHc-------
Confidence 799999999999999999888 4 8999996 444456 55554 33333322222 2110
Q ss_pred CCCcccceEEEEeecCC--CeeEEEEEE
Q 022648 123 PQGKIVSKVYLCEKLSL--VNEMYFAIM 148 (294)
Q Consensus 123 ~~g~~i~~vLVee~v~~--~~El~lgv~ 148 (294)
+ -..+++|++++. +.++.+-+.
T Consensus 191 --~--~~~~lvQ~~I~~~~~~D~Rv~vv 214 (316)
T PRK05246 191 --G--REPVMAQRYLPEIKEGDKRILLV 214 (316)
T ss_pred --c--CCeEEEEeccccCCCCCEEEEEE
Confidence 1 146999999964 456666555
No 98
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=95.02 E-value=0.18 Score=47.80 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=51.0
Q ss_pred HcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc--CHHHHHHHHHHHhhchhhh
Q 022648 41 KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVT 118 (294)
Q Consensus 41 ~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~--s~eea~~a~~~~l~~~~~~ 118 (294)
.+..++|++.+..+.+++.++.++. + |+|+||. .|+.|+ ||... +..++....+ .+...
T Consensus 129 ~~~~~vP~T~v~~~~~~~~~~~~~~--g--~vVvKPl--~G~~G~---------gv~~v~~~~~~~~~~~~-~~~~~--- 189 (312)
T TIGR01380 129 QFPKVIPPTLVTRDKAEIRAFLAEH--G--DIVLKPL--DGMGGE---------GIFRLDPGDPNFNSILE-TMTQR--- 189 (312)
T ss_pred hCcCCCCCEEEeCCHHHHHHHHHHc--C--CEEEEEC--CCCCCc---------eEEEEcCCCccHHHHHH-HHHhc---
Confidence 4445899999999999999999988 4 8999996 444455 55543 2222222212 11110
Q ss_pred hccCCCCcccceEEEEeecCC--CeeEEEEEE
Q 022648 119 KQTGPQGKIVSKVYLCEKLSL--VNEMYFAIM 148 (294)
Q Consensus 119 ~q~~~~g~~i~~vLVee~v~~--~~El~lgv~ 148 (294)
+. ..+++|+|++. +.++.+-+.
T Consensus 190 ------~~--~~~~vQ~yI~~~~~~D~Rv~vv 213 (312)
T TIGR01380 190 ------GR--EPVMAQRYLPEIKEGDKRILLI 213 (312)
T ss_pred ------cC--CcEEEEeccccccCCCEEEEEE
Confidence 11 46999999973 456666554
No 99
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=94.05 E-value=0.22 Score=46.71 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeee-----------eCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCC
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLA-----------VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~-----------a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK 85 (294)
..=++...++++.++|||+|+... ..+.+++.+..+.. ...++|+||. .|..||
T Consensus 23 l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~viKP~--~G~~G~ 87 (285)
T PF14397_consen 23 LLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH--APDRFVIKPA--NGSGGK 87 (285)
T ss_pred ccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhc--cCCcEEEEeC--CCCCcc
Confidence 445588999999999999999321 13566777777654 2268999996 344466
No 100
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=91.41 E-value=12 Score=34.63 Aligned_cols=105 Identities=15% Similarity=0.321 Sum_probs=69.1
Q ss_pred cCCCHHHHHHHHHHcC-CC--CCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccc-cCCcCcEEEc----
Q 022648 28 LNIHEYQGAELMAKYG-IN--VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK-SGLKGGVHIV---- 99 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yG-Ip--vp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~-~sd~GGV~l~---- 99 (294)
..++.++..+.|.++. +. .|++...++.+++.+..... ..+.|||. .|.+|+|++. +..-++..+.
T Consensus 15 ~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y----~~vylKP~--~Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 15 GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKY----KSVYLKPD--NGSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHC----CEEEEEeC--CCCCCccEEEEEEeCCEEEEEEccC
Confidence 4577888888898864 43 58999999999999999887 46999997 6667887774 2222243332
Q ss_pred ---------CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCC----C--eeEEEEEEEcCC
Q 022648 100 ---------KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL----V--NEMYFAIMLDRK 152 (294)
Q Consensus 100 ---------s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~----~--~El~lgv~~D~~ 152 (294)
+.+++.+...+.++. ..++||+.++- + ..+.+-+..|..
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~~--------------~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~ 142 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLGK--------------RRYIIQQGIPLATYDGRPFDFRVLVQKNGS 142 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcCC--------------CcEEEeCCccccccCCCeEEEEEEEEECCC
Confidence 345555554443322 46888888742 2 355566666543
No 101
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=91.32 E-value=0.83 Score=43.99 Aligned_cols=31 Identities=3% Similarity=-0.038 Sum_probs=22.9
Q ss_pred ceEEEEeecCCCeeEEEEEEEcCCCCceEEEec
Q 022648 129 SKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (294)
Q Consensus 129 ~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s 161 (294)
.+++.|+|++ |.-+.+.+.-+.+. .-++.+.
T Consensus 176 ~~~i~Qefi~-G~p~Svs~is~g~~-a~~la~N 206 (389)
T COG2232 176 PGFIFQEFIE-GRPVSVSFISNGSD-ALTLAVN 206 (389)
T ss_pred cceehhhhcC-CceeEEEEEecCcc-eEEEEEe
Confidence 5799999998 78888888888764 2334443
No 102
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=91.07 E-value=0.015 Score=59.98 Aligned_cols=212 Identities=13% Similarity=-0.015 Sum_probs=110.4
Q ss_pred ccCCCHHHHHHHHHHcC----CCCCCee------eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcE
Q 022648 27 RLNIHEYQGAELMAKYG----INVPKGL------AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGV 96 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yG----Ipvp~~~------~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV 96 (294)
+...-+++.++.|.+|| +||++.. .+.+.........++ + .++|-|...+. .+++.+.+||
T Consensus 21 ~~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dl--a-v~~v~~~~~~~------i~~~~~~kGv 91 (598)
T COG1042 21 RPGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDL--A-VIVVPAKVVPE------IVHELGEKGV 91 (598)
T ss_pred CcchhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCe--e-EEEechhhhHH------HHHHhhccCC
Confidence 34566999999999999 9998776 555444444444556 5 67777764331 2223445666
Q ss_pred EEc--CHHHHHHHHHHHhh--chhhhhccCCCCcccceEEEEeecCCCeeEEEE--EEEcCCCCceEEEecCCCCceeee
Q 022648 97 HIV--KKEEVEDLAGKMLG--QILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA--IMLDRKTAGPIIIGCSKGGTSIED 170 (294)
Q Consensus 97 ~l~--s~eea~~a~~~~l~--~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lg--v~~D~~~~gPvil~s~~GGv~vE~ 170 (294)
+.+ .....+++.++... +.++. . ...-...++.|+..+..+..+| .+.++.+ ++. +. -|+..++.
T Consensus 92 ~~~i~is~gf~e~~~~~~~~e~~~~~--~---a~~~~~rligPn~~G~~~~~~glna~f~p~~-~~~--~~-g~~afvsq 162 (598)
T COG1042 92 KGAIVISAGFREAGEEGMELEKELVE--A---ARKYGMRIIGPNCLGLINPIIGLNATFDPVF-GLG--RG-GGGAFVSQ 162 (598)
T ss_pred ceEEEechhhhHHhhhHhHHHHHHHH--H---HHhcCceEeccccccccccccccccccCccc-ccc--cC-CCeEEEEe
Confidence 665 33444444443211 11000 0 1112467899999988999999 7777764 332 22 45567776
Q ss_pred ccccCCCeEEEEeecCCCCCCHHHHHHHHH----hCC------CCcccHHHHHHHHHHHHHhhccC-CCcEEEeeceeEe
Q 022648 171 LAEKYPNMIVKVPIDVFNGITDEDAAKVVD----GLA------PKVADRNDAIEQVKKLYKLFCES-DCTLLEVSMNFYI 239 (294)
Q Consensus 171 l~~~~pd~v~~~~l~p~~gl~~~~a~~~~~----~lg------~~~~~~~~l~~~l~~L~~l~~~~-d~~~LEINPL~v~ 239 (294)
..+ .. +.+.+ .+..+ +|-. ++| ..+.......+...+...++.|. +....++||....
T Consensus 163 sga----v~--~~il~---~~~~~--~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~ 231 (598)
T COG1042 163 SGA----VS--FAILD---WANED--GMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAA 231 (598)
T ss_pred chH----HH--Hhccc---hhhhc--CCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHH
Confidence 653 11 22222 11111 1111 111 11111112222222333334432 2223578887775
Q ss_pred cCCc-EEEEEEEEechhhHHHHHhhhhHH
Q 022648 240 SLVL-LICMSLLVGGQVELVIHLVGGSLC 267 (294)
Q Consensus 240 ~dg~-~valDa~i~~~~~~~~~~~~~~~~ 267 (294)
+.++ ++++|+........-.-.-.||+|
T Consensus 232 ~~~kpii~lk~gr~~~~akAa~shTgsla 260 (598)
T COG1042 232 ERKKPIIALKAGRSEAGAKAAASHTGSLA 260 (598)
T ss_pred hcCCCEEEEeccCCHHHHHHHhccccccc
Confidence 5544 889998887654444444445544
No 103
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=90.60 E-value=1 Score=39.42 Aligned_cols=66 Identities=20% Similarity=0.326 Sum_probs=37.4
Q ss_pred CCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc--CHHHHHHHHHHHhhchhhhhccCC
Q 022648 46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTGP 123 (294)
Q Consensus 46 vp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~--s~eea~~a~~~~l~~~~~~~q~~~ 123 (294)
+|+..+.++.+++.++.++. + . +|+||-.-.| |+ ||... +.....+..+.+...
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~--~-~-~VlKPl~g~g--G~---------gV~~i~~~~~n~~~i~e~~~~~--------- 67 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEH--G-D-IVLKPLDGMG--GR---------GVFRISRDDPNLNSILETLTKN--------- 67 (173)
T ss_dssp S--EEEES-HHHHHHHHHHH--S-S-EEEEESS--T--TT---------T-EEE-TT-TTHHHHHHHHTTT---------
T ss_pred CcCEEEECCHHHHHHHHHHC--C-C-EEEEECCCCC--Cc---------CEEEEcCCCCCHHHHHHHHHhc---------
Confidence 48999999999999999999 6 4 9999964333 45 44443 433344434333222
Q ss_pred CCcccceEEEEeecC
Q 022648 124 QGKIVSKVYLCEKLS 138 (294)
Q Consensus 124 ~g~~i~~vLVee~v~ 138 (294)
+ -..+++|+|++
T Consensus 68 -~--~~~~mvQ~flp 79 (173)
T PF02955_consen 68 -G--ERPVMVQPFLP 79 (173)
T ss_dssp -T--TS-EEEEE--G
T ss_pred -C--CccEEEEeccc
Confidence 1 15799999997
No 104
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=86.57 E-value=1.7 Score=28.26 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD 64 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~ 64 (294)
-++.+-++.|.+|||++|+.. .+.+|+.+.+++
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK 36 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence 356788999999999999987 688999888765
No 105
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=82.20 E-value=5.5 Score=38.50 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=55.8
Q ss_pred CCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEcCHHHHHHHHHHHhhchhhhhccCCCC
Q 022648 46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQG 125 (294)
Q Consensus 46 vp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~s~eea~~a~~~~l~~~~~~~q~~~~g 125 (294)
|-++.-+-|.++|..++..+- ...|+=+|+-...|||| ...+.+.+++..+...+-...+.
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL-~~G~VRlKp~~a~gG~G----------Q~vv~~~~~Ld~~L~~~~~~~l~-------- 174 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLL-RDGPVRLKPVHATGGRG----------QQVVADADELDAALAALDDAELA-------- 174 (355)
T ss_pred ccCCccccCHHHHHHHHHHHh-ccCCeeeccCcccCCCC----------ceEecCHHHHHHHHHcCCHHHHH--------
Confidence 556777788999999999864 33699999965556543 34444888888888877655441
Q ss_pred cccceEEEEeecCCCeeEEEE
Q 022648 126 KIVSKVYLCEKLSLVNEMYFA 146 (294)
Q Consensus 126 ~~i~~vLVee~v~~~~El~lg 146 (294)
-.++.+|+.+..-.-+.||
T Consensus 175 --~~GlVLE~~L~~~~T~SVG 193 (355)
T PF11379_consen 175 --RHGLVLEEDLEEVVTYSVG 193 (355)
T ss_pred --hCCEEEecccCCCceeeEE
Confidence 2578888888655555555
No 106
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=78.49 E-value=6.7 Score=39.33 Aligned_cols=84 Identities=19% Similarity=0.090 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCC--------HHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVAS--------VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s--------~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~- 99 (294)
.|++. -+++.++| +|-++.++. .-++.+.+..- . ..+|+||.-..| |+ ||.++
T Consensus 297 ~Lt~e-e~~~I~~H---vP~T~~l~~~~~~~~g~~~dL~~~~~a~--r-~~lVLKP~D~Yg--g~---------GV~~G~ 358 (445)
T PF14403_consen 297 FLTAE-ERAFIRRH---VPWTRLLTAGRTTYQGEDVDLVEFAIAN--R-DRLVLKPNDEYG--GK---------GVYIGW 358 (445)
T ss_pred cCCHH-HHHHHHHh---CCceEEEcCccccccccchhHHHHHHhc--h-hcEEeccccccC--CC---------CeEECC
Confidence 34543 34555555 677777765 23444333332 2 469999963333 55 89998
Q ss_pred --CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEE
Q 022648 100 --KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF 145 (294)
Q Consensus 100 --s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~l 145 (294)
++++-+++.++.++ +++++||+++...|-+.
T Consensus 359 e~~~eeW~~~l~~a~~---------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 359 ETSPEEWEAALEEAAR---------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred cCCHHHHHHHHHHHhc---------------CCcEEEEEecCCccccc
Confidence 88988888777543 36899999976555444
No 107
>PRK05849 hypothetical protein; Provisional
Probab=75.76 E-value=1.2e+02 Score=32.71 Aligned_cols=189 Identities=16% Similarity=0.094 Sum_probs=98.6
Q ss_pred CHHHHHHHHHH--cCCCCCCeeeeCC------HHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCc--EEEc-
Q 022648 31 HEYQGAELMAK--YGINVPKGLAVAS------VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGG--VHIV- 99 (294)
Q Consensus 31 ~E~~ak~lL~~--yGIpvp~~~~a~s------~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GG--V~l~- 99 (294)
++.+.-..|+. .|.++|+..+++. .+++.+.....+ +..|++|+.... +-++. ..|-+|. -.++
T Consensus 10 ~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~-~~~~laVRSSa~-~ED~~---~~S~AGq~~S~lnV 84 (783)
T PRK05849 10 TKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSF-PADKLIVRSSSR-SEDSS---SSSNAGAFLSILNV 84 (783)
T ss_pred hHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhc-CCCeEEEECCCc-ccCCC---cCccccCceeEecC
Confidence 34555666777 7999999988765 333333332211 225899997532 11111 1255665 4445
Q ss_pred CH---HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCce--EEEecCCC-Cceeeeccc
Q 022648 100 KK---EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGP--IIIGCSKG-GTSIEDLAE 173 (294)
Q Consensus 100 s~---eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gP--vil~s~~G-Gv~vE~l~~ 173 (294)
+. +++.+|.++.++..- + ..-..|+||+|+....=-=|..++||..+.| ++.+...| |-++-. ..
T Consensus 85 ~~~~~~~L~~AI~~V~aS~~----~----~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVs-G~ 155 (783)
T PRK05849 85 NADSKDQLLKAIEKVIASYG----T----SKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTS-GS 155 (783)
T ss_pred CCCcHHHHHHHHHHHHHhhC----C----CCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceec-cc
Confidence 22 489999888876531 0 1125799999996312222778888886533 33333111 112211 11
Q ss_pred cCCCeEEEEeecCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhc-cCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 174 KYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFC-ESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 174 ~~pd~v~~~~l~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~-~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
.+|+... +... .+ -...+....+++++..+|-+.|. +. .-+| ..++.+|+++.+-+|-.
T Consensus 156 ~t~~~~~-~~~~-----------~~---~~l~p~~~~~L~~la~~LE~~fg~dp--qDIE---faid~~g~L~lLQ~RPi 215 (783)
T PRK05849 156 GGSATTV-YHYR-----------DA---LVFKPPRLKKLIELIRELEALFGCDF--LDIE---FAIDEKEELYILQVRPI 215 (783)
T ss_pred CCCCcee-eecc-----------cc---ccCCHHHHHHHHHHHHHHHHHcCCCC--eeeE---EEEccCCEEEEEEccCC
Confidence 1222211 0000 00 01345567777777777777773 22 1122 12345677888888864
Q ss_pred c
Q 022648 253 G 253 (294)
Q Consensus 253 ~ 253 (294)
-
T Consensus 216 ~ 216 (783)
T PRK05849 216 T 216 (783)
T ss_pred C
Confidence 4
No 108
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=69.24 E-value=5.5 Score=38.01 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=39.3
Q ss_pred cCCCCCCeeeeC-CHHHHHHHHH--HhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhh
Q 022648 42 YGINVPKGLAVA-SVDEVKKAIQ--DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV 117 (294)
Q Consensus 42 yGIpvp~~~~a~-s~eEa~~aa~--~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~ 117 (294)
.+|.+|+..++. +.++..+..+ .+ . +|+++||...+| ..+ .....+. +.+.+.+. .
T Consensus 111 ~~i~~P~~v~i~~~~~~~~~~l~~agL--~-fPlI~KPlvA~G-sa~-------SH~Maivf~~~gL~~L-----~---- 170 (307)
T PF05770_consen 111 GRIRVPKFVVINSDAESLPELLKEAGL--K-FPLICKPLVACG-SAD-------SHKMAIVFNEEGLKDL-----K---- 170 (307)
T ss_dssp TTEE-S-EEEESSSHCCHHHHHHCTTS----SSEEEEESB-SS-TSC-------CCEEEEE-SGGGGTT-----------
T ss_pred CcccCCceEEEcCCHHHHHHHHHHCCC--c-ccEEeeehhhcC-Ccc-------ceEEEEEECHHHHhhc-----C----
Confidence 478899998887 4334444332 34 5 899999986543 323 4578888 87766531 0
Q ss_pred hhccCCCCcccceEEEEeecCCCee
Q 022648 118 TKQTGPQGKIVSKVYLCEKLSLVNE 142 (294)
Q Consensus 118 ~~q~~~~g~~i~~vLVee~v~~~~E 142 (294)
..+++|||++|+.=
T Consensus 171 -----------~P~VlQeFVNHggv 184 (307)
T PF05770_consen 171 -----------PPCVLQEFVNHGGV 184 (307)
T ss_dssp -----------SSEEEEE----TTE
T ss_pred -----------CCEEEEEeecCCCE
Confidence 24789999988643
No 109
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=57.07 E-value=2.9e+02 Score=30.13 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=40.2
Q ss_pred CeEEEEEeeecCCCCCcccccCCcCc--EEEc--CHHHHHHHHHHHhhchhhhh-----c-cCCC-CcccceEEEEeecC
Q 022648 70 KELVVKSQILAGGRGLGTFKSGLKGG--VHIV--KKEEVEDLAGKMLGQILVTK-----Q-TGPQ-GKIVSKVYLCEKLS 138 (294)
Q Consensus 70 ~PvVlKaq~~~ggrgK~~~~~sd~GG--V~l~--s~eea~~a~~~~l~~~~~~~-----q-~~~~-g~~i~~vLVee~v~ 138 (294)
.|++|.+....- ++. ..|-+|. ..++ +.+++.++.++..+.....+ + .|-. ....-.|+||+|++
T Consensus 110 ~~~aVRSSa~~E-D~~---~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~ 185 (871)
T PRK06241 110 HAYAVRSSATAE-DLP---TASFAGQQDTYLNVIGKDAILQHIRKCWASLFTERAVIYRIQNGFDHRKVYMSVVVQKMVF 185 (871)
T ss_pred CeEEEeCCCCcc-CCC---CCCCccccccccCCCCHHHHHHHHHHHHHhccCHHHHHHHHHcCCCchhcceEEEEEeccc
Confidence 478888753211 111 1133554 3444 57888888877766521000 0 0111 11234799999997
Q ss_pred CCeeEEEEEEEcCCC
Q 022648 139 LVNEMYFAIMLDRKT 153 (294)
Q Consensus 139 ~~~El~lgv~~D~~~ 153 (294)
... =-+..+.||..
T Consensus 186 ~~~-sGV~ft~~P~~ 199 (871)
T PRK06241 186 PEA-SGIMFTADPVT 199 (871)
T ss_pred ccc-ceEEEecCCCC
Confidence 431 12446667653
No 110
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=53.67 E-value=41 Score=30.23 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=36.4
Q ss_pred cCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEcCHHHHHHHHHHHhhchhhhhcc
Q 022648 42 YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121 (294)
Q Consensus 42 yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~s~eea~~a~~~~l~~~~~~~q~ 121 (294)
-.+|.-+.....+..|.. ..- . +|+|+|.-...+ |- |=+++.|..+.++.+.-+ ... +
T Consensus 29 e~FPLieQt~ypnh~em~---s~~--~-fPvVvKvG~~h~--G~--------GKvkv~n~~~~qDi~sll-~~~----~- 86 (203)
T PF02750_consen 29 EKFPLIEQTYYPNHREML---SAP--R-FPVVVKVGHAHA--GM--------GKVKVDNQQDFQDIASLL-AIT----K- 86 (203)
T ss_dssp TTS-B---EEESSGGGGC---S-S--S-SSEEEEESS-ST--TT--------TEEEE-SHHHHHHHHHHH-HHH----T-
T ss_pred cccccceeeecCChhhhc---cCC--C-CCEEEEEccccC--ce--------eEEEEccHHHHHHHHHHH-Hhc----C-
Confidence 356776666666655432 111 4 899999742222 33 346655887777765543 221 0
Q ss_pred CCCCcccceEEEEeecCCCeeEEE
Q 022648 122 GPQGKIVSKVYLCEKLSLVNEMYF 145 (294)
Q Consensus 122 ~~~g~~i~~vLVee~v~~~~El~l 145 (294)
.-+.+|||++....+.+
T Consensus 87 -------~Y~T~EPfId~kyDirv 103 (203)
T PF02750_consen 87 -------DYATTEPFIDAKYDIRV 103 (203)
T ss_dssp -------S-EEEEE---EEEEEEE
T ss_pred -------ceEEeeccccceeEEEE
Confidence 35788999975545443
No 111
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=52.72 E-value=36 Score=32.80 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=52.7
Q ss_pred hhhhhhhhcccccccchhh----hhhhcccCCCHHHHHHHHHHc-CCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEe
Q 022648 3 RGLLNKLVSRSLTVAGQWQ----QQQLRRLNIHEYQGAELMAKY-GINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQ 77 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~E~~ak~lL~~y-GIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq 77 (294)
-||++-.-+..++++ |+- .+-...+..-...++.+|.+- -+|..+++.+.++++.....+.+ . .+|+||.
T Consensus 221 ~GL~~A~r~G~V~ia-Na~G~gv~edkal~~~lp~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l--~--~lvvKp~ 295 (330)
T PF04174_consen 221 PGLLEAYRAGNVVIA-NAPGSGVAEDKALYAFLPRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANL--D--ELVVKPA 295 (330)
T ss_dssp TTHHHHHHTTS-EEE-S-TTTHHHHSTTTGGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHHSG--G--GEEEEE-
T ss_pred HHHHHHHHhCCEEEE-CCCccchhcchhHHHHhHHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhch--h--hcEEEec
Confidence 466766666666666 553 133333333355555555432 44556777888899999999998 4 6999996
Q ss_pred eecCCCCCcccccCCcCcEEEc---CHHHHHHHHHHHhhc
Q 022648 78 ILAGGRGLGTFKSGLKGGVHIV---KKEEVEDLAGKMLGQ 114 (294)
Q Consensus 78 ~~~ggrgK~~~~~sd~GGV~l~---s~eea~~a~~~~l~~ 114 (294)
.+..|+ |+.++ |. |.++..+++..+
T Consensus 296 --~g~gg~---------~~~~G~~~s~-e~~~~~~~I~~~ 323 (330)
T PF04174_consen 296 --DGYGGK---------GVYIGPKLSA-ERRALRAEILAR 323 (330)
T ss_dssp ------------------EEEGGG--H-HHHHHHHHHHHS
T ss_pred --CCCCCC---------cceeCCcCCH-HHHHHHHHHHhC
Confidence 333355 77777 55 777777777644
No 112
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=52.47 E-value=32 Score=33.87 Aligned_cols=57 Identities=32% Similarity=0.414 Sum_probs=38.5
Q ss_pred EEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEE
Q 022648 72 LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144 (294)
Q Consensus 72 vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~ 144 (294)
|+||++ +|.=|- ||..+ +.+|+...-++-.++-- .-+.|..++.|+|||=+. ..|.+
T Consensus 260 ViVKAD--aGTYGM---------GImtv~~~~ev~~LNrK~RnKM~----~~Keg~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 260 VIVKAD--AGTYGM---------GIMTATSGEEVLGLNRKERNKMA----KVKEGLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred EEEEcC--CCCCCc---------eEEEecCHHHHHHhhhhhhhhcc----cccCCCccceEEEecCcc-eeeee
Confidence 679998 665555 78888 99999875443322211 124588899999999986 44533
No 113
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=36.37 E-value=32 Score=33.89 Aligned_cols=55 Identities=31% Similarity=0.361 Sum_probs=27.9
Q ss_pred EEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCee
Q 022648 72 LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142 (294)
Q Consensus 72 vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~E 142 (294)
++||++ +|-=|- ||..+ |.+|+...-++-.++-- ..+.|..++.|+|||=+. ..|
T Consensus 263 V~VKAD--~GTYGM---------GImtV~~~~ev~~LNrK~RnKM~----~~Keg~~v~~VIIQEGV~-T~E 318 (404)
T PF08886_consen 263 VFVKAD--AGTYGM---------GIMTVKSGDEVLGLNRKQRNKMS----VIKEGLEVSEVIIQEGVY-TFE 318 (404)
T ss_dssp EEEEEE---GGG-E---------EEEEESSGGGGSS--HHHHHHHH-----SSSSS---EEEEEE------E
T ss_pred EEEEcC--CCCCCc---------eEEEecCHHHHHHHhHHHhhhhh----hhcCCCccceeEEecCcc-hhh
Confidence 679998 554455 77777 99987653332222211 134688899999999986 344
No 114
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=33.51 E-value=36 Score=25.29 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=19.9
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCC
Q 022648 25 LRRLNIHEYQGAELMAKYGINVPKGLAVAS 54 (294)
Q Consensus 25 ~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s 54 (294)
...+...|+-+.++.++.||++|+..+...
T Consensus 39 ~~~~~~nE~~~~~lA~~~Gi~v~~~~l~~~ 68 (81)
T PF07805_consen 39 DPDLVENEYACMRLARAAGIPVPETRLIRF 68 (81)
T ss_dssp ETTHHHHHHHHHHHHHHTT-----EEEEEE
T ss_pred ccchHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 334556799999999999999999998653
No 115
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=32.09 E-value=3.4e+02 Score=24.68 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred cCCCHHHHHHHHHHcC---CCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-----
Q 022648 28 LNIHEYQGAELMAKYG---INVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----- 99 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yG---Ipvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~----- 99 (294)
.--+.+.+|+.+++.+ .-+|-..+.++++|+.- ..+ . .++|||+. + |. |++.+.
T Consensus 17 ~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~~--~~L--p-~~fViK~n--h-gs----------g~~~i~~dk~~ 78 (239)
T PF14305_consen 17 KLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDIDF--DSL--P-DKFVIKPN--H-GS----------GSNIIVRDKSK 78 (239)
T ss_pred ecchHHHHHHHHHHhCCCceECceeecCCChhhhhh--hcC--C-CCEEEEEe--c-CC----------CcEEEEeCCcc
Confidence 3355899999999986 33445556677776532 234 4 58999996 2 21 343333
Q ss_pred -CHHHHHHHHHHHhhchhhh--hccCCCCcccceEEEEeecC
Q 022648 100 -KKEEVEDLAGKMLGQILVT--KQTGPQGKIVSKVYLCEKLS 138 (294)
Q Consensus 100 -s~eea~~a~~~~l~~~~~~--~q~~~~g~~i~~vLVee~v~ 138 (294)
+.+++..-+.+++....-. ... +-...-..++||+++.
T Consensus 79 ~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~ 119 (239)
T PF14305_consen 79 LDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLE 119 (239)
T ss_pred cCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccc
Confidence 4455555555555432100 000 1112245799999984
No 116
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=30.61 E-value=7.2e+02 Score=26.86 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=41.8
Q ss_pred eEEEEEeeecCCCCCcccccCCcCc--EEEc--CHHHHHHHHHHHhhchhhhh------ccCCC-CcccceEEEEeecCC
Q 022648 71 ELVVKSQILAGGRGLGTFKSGLKGG--VHIV--KKEEVEDLAGKMLGQILVTK------QTGPQ-GKIVSKVYLCEKLSL 139 (294)
Q Consensus 71 PvVlKaq~~~ggrgK~~~~~sd~GG--V~l~--s~eea~~a~~~~l~~~~~~~------q~~~~-g~~i~~vLVee~v~~ 139 (294)
|+++++....- +.. ..|.+|- ..++ +.+++.++.++..+.....+ ..+-. ....-.|+||+|++.
T Consensus 117 ~vaVRSSa~~E-D~~---~~SfAGq~~s~l~v~~~~~l~~aik~v~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~ 192 (782)
T TIGR01418 117 DVAVRSSATAE-DLP---DASFAGQQETYLNVTGEEEVLEHVKKCWASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRS 192 (782)
T ss_pred eEEEECCCCCC-CCC---CCCcccceeeeecCCCHHHHHHHHHHHHHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccC
Confidence 78888753211 111 1134554 3556 47899999888877532111 00111 112346999999974
Q ss_pred Ce-eEEEEEEEcCCCC
Q 022648 140 VN-EMYFAIMLDRKTA 154 (294)
Q Consensus 140 ~~-El~lgv~~D~~~~ 154 (294)
.. ===+..++||..+
T Consensus 193 ~~~~SGV~fT~~P~~g 208 (782)
T TIGR01418 193 DLGSSGVMFTIDTETG 208 (782)
T ss_pred CCCceeEEEecCCCCC
Confidence 31 1114455677654
No 117
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=27.43 E-value=14 Score=28.67 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=30.4
Q ss_pred hhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHh
Q 022648 22 QQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA 65 (294)
Q Consensus 22 ~~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l 65 (294)
+||.. +.-....-..|.+.||.|+|......+.+|+.++.+..
T Consensus 6 ~qq~s-~~~a~~~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~ 48 (108)
T PF00730_consen 6 SQQTS-IKAARKIYRRLFERYGFPTPEALAEASEEELRELIRPL 48 (108)
T ss_dssp CTTS--HHHHHHHHHHHHHHHSCSSHHHHHCSHHHHHHHHHTTS
T ss_pred cCcCc-HHHHHHHHHHHHHHhcCCCHHHHHhCCHHHHHHHhhcc
Confidence 34433 33334456788899999999888877888888877665
No 118
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=26.45 E-value=1e+02 Score=32.58 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=32.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHHHh
Q 022648 27 RLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~-~~~a~s~eEa~~aa~~l 65 (294)
...-+.++.-+.|++.|+|+.+ ..++.+.+|+.+..+.+
T Consensus 233 ~~~~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 272 (667)
T COG0272 233 LLADTQSERLAFLKAWGFPVNPYTRLCKNADEVLAFYEEW 272 (667)
T ss_pred CCccCHHHHHHHHHHcCCCCCcHhhhcCCHHHHHHHHHHH
Confidence 3445689999999999999866 67999999998888765
No 119
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=25.68 E-value=1.4e+02 Score=20.98 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHh
Q 022648 32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA 65 (294)
Q Consensus 32 E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l 65 (294)
=..++++|+++||+.....+..+++...++.+..
T Consensus 13 C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 13 CVRAKALLDKKGVDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 3468999999999887666656655444444433
No 120
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=25.02 E-value=1.4e+02 Score=20.69 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022648 265 SLCIVLLLLLFSLVDVLVWIFFLFWV 290 (294)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (294)
+++|.+=..|..-.|...|+-|..|.
T Consensus 11 ~~si~~ni~Lm~~L~~~twirf~iWl 36 (51)
T PF13906_consen 11 ALSILINIYLMAQLSALTWIRFGIWL 36 (51)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 34566666677778999999999996
No 121
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=23.00 E-value=9.9e+02 Score=25.91 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=41.9
Q ss_pred CeEEEEEeeecCCCCCcccccCCcCc--EEEc--CHHHHHHHHHHHhhchhhhhc---cCCCCc----ccceEEEEeecC
Q 022648 70 KELVVKSQILAGGRGLGTFKSGLKGG--VHIV--KKEEVEDLAGKMLGQILVTKQ---TGPQGK----IVSKVYLCEKLS 138 (294)
Q Consensus 70 ~PvVlKaq~~~ggrgK~~~~~sd~GG--V~l~--s~eea~~a~~~~l~~~~~~~q---~~~~g~----~i~~vLVee~v~ 138 (294)
.|+.+++....--... .|.+|- ..++ +.+++.++.++..+.....+. +...|. ..-.|+||+|++
T Consensus 119 ~~vaVRSSa~~ED~~~----~SfAGq~~t~l~v~~~~~l~~AIk~v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~ 194 (795)
T PRK06464 119 ASVAVRSSATAEDLPD----ASFAGQQETFLNVRGIDDVLEAVKECFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVR 194 (795)
T ss_pred ceEEEECCCcccCCCC----CCCCCccceecCCCCHHHHHHHHHHHHHccCCHHHHHHHHHcCCCchhcceeEEEEEccC
Confidence 3788886432100011 134554 4455 478899888887765321110 001121 234699999998
Q ss_pred CCe-eEEEEEEEcCCCC
Q 022648 139 LVN-EMYFAIMLDRKTA 154 (294)
Q Consensus 139 ~~~-El~lgv~~D~~~~ 154 (294)
... ===+..++||..+
T Consensus 195 a~~~~SGV~fT~dP~~g 211 (795)
T PRK06464 195 SDLAASGVMFTLDTESG 211 (795)
T ss_pred CCcCceEEEEecCCCCC
Confidence 531 1123455577653
No 122
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.24 E-value=1.4e+02 Score=29.17 Aligned_cols=120 Identities=12% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEcCHHHHHHHHHHHhh
Q 022648 34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLG 113 (294)
Q Consensus 34 ~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~s~eea~~a~~~~l~ 113 (294)
--|+++.+||-|+|+..+-+...+ .+.++++ + ++ =+|... | ..+..++-++++.+-.
T Consensus 135 Lek~~~~ky~~pt~ealveSAl~~-a~~~e~l--~-f~-~i~iS~------K------------~Sdv~~~v~aYr~lA~ 191 (361)
T COG0821 135 LEKRLLEKYGGPTPEALVESALEH-AELLEEL--G-FD-DIKVSV------K------------ASDVQLMVAAYRLLAK 191 (361)
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHH-HHHHHHC--C-CC-cEEEEE------E------------cCCHHHHHHHHHHHHH
Confidence 348899999999888766544444 4577788 7 54 222211 2 1156677777776533
Q ss_pred chhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCC-CceEEEecCCCCceeeeccccCCCeEEEEeecCCCCCCH
Q 022648 114 QILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT-AGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 192 (294)
Q Consensus 114 ~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~-~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~ 192 (294)
+. ..-+.+|++.-... .|-|=..-..|--..|-+.| .+ |+.+.++..---
T Consensus 192 ~~------------------------dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGIGD----TI-RVSLt~~P~~EV 242 (361)
T COG0821 192 RC------------------------DYPLHLGVTEAGMGFKGIVKSAAALGALLSEGIGD----TI-RVSLTADPVEEV 242 (361)
T ss_pred hc------------------------CCCcccceecccCcccceehHHHHHHHHHHhcCCc----eE-EEecCCCchhhh
Confidence 21 13455666655432 12221111123334455544 33 355554331122
Q ss_pred HHHHHHHHhCCCC
Q 022648 193 EDAAKVVDGLAPK 205 (294)
Q Consensus 193 ~~a~~~~~~lg~~ 205 (294)
..++++++.+|++
T Consensus 243 ~V~~eILqslglR 255 (361)
T COG0821 243 KVAQEILQSLGLR 255 (361)
T ss_pred HHHHHHHHHhCcc
Confidence 3488999999875
No 123
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=21.19 E-value=1.3e+02 Score=27.73 Aligned_cols=63 Identities=32% Similarity=0.374 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCC---CCe---eeeCCHHHHHHHHHHhCCCCCeEEEEEe--eecCC-CCCcccccCCcCcEEEc
Q 022648 34 QGAELMAKYGINV---PKG---LAVASVDEVKKAIQDAFPDHKELVVKSQ--ILAGG-RGLGTFKSGLKGGVHIV 99 (294)
Q Consensus 34 ~ak~lL~~yGIpv---p~~---~~a~s~eEa~~aa~~l~~g~~PvVlKaq--~~~gg-rgK~~~~~sd~GGV~l~ 99 (294)
.-|.+|++|||.- |-+ ...+|..||.++.... + ++-+-|-. ..+++ -|...|.....|.|.+.
T Consensus 126 aLkpil~~~gi~GLVEPLGF~~csLRsk~eA~~aI~aa--~-g~~~fklvhDTFHHhLagE~~ffpdlTGLVHiS 197 (272)
T COG4130 126 ALKPILDEYGITGLVEPLGFRVCSLRSKAEAAEAIRAA--G-GERVFKLVHDTFHHHLAGETEFFPDLTGLVHIS 197 (272)
T ss_pred HhhHHHHHhCccccccccCchhhhhhhHHHHHHHHHHh--C-CCceeeeehhhhhhhhcccceecccccceeEec
Confidence 3478999999842 322 2336778888888888 6 67788862 11111 34445555555667775
Done!