Query 022648
Match_columns 294
No_of_seqs 156 out of 1532
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fp4_B Succinyl-COA ligase [GD 100.0 9.1E-46 3.1E-50 357.6 22.5 222 28-252 1-224 (395)
2 3ufx_B Succinyl-COA synthetase 100.0 2E-43 6.8E-48 341.5 21.5 207 28-252 1-208 (397)
3 2nu8_B SCS-beta, succinyl-COA 100.0 4E-43 1.4E-47 338.5 22.5 215 28-252 1-217 (388)
4 3mwd_A ATP-citrate synthase; A 100.0 7.9E-37 2.7E-41 297.2 16.6 204 28-252 4-220 (425)
5 3pff_A ATP-citrate synthase; p 100.0 1.4E-35 4.9E-40 307.0 15.3 204 28-252 4-220 (829)
6 1wr2_A Hypothetical protein PH 100.0 8.4E-34 2.9E-38 255.2 21.2 204 24-252 14-233 (238)
7 3e5n_A D-alanine-D-alanine lig 99.6 8.3E-15 2.8E-19 140.4 12.0 188 29-267 157-371 (386)
8 3i12_A D-alanine-D-alanine lig 99.5 4.2E-14 1.4E-18 134.1 11.7 97 28-152 137-238 (364)
9 4eg0_A D-alanine--D-alanine li 99.5 2.2E-14 7.6E-19 132.8 9.4 196 28-266 104-315 (317)
10 3tqt_A D-alanine--D-alanine li 99.4 3.8E-13 1.3E-17 128.4 11.8 97 28-152 137-239 (372)
11 3k3p_A D-alanine--D-alanine li 99.4 4.8E-13 1.7E-17 128.2 11.2 96 29-152 159-260 (383)
12 3aw8_A PURK, phosphoribosylami 99.4 1.7E-12 5.9E-17 122.1 14.1 166 27-241 92-267 (369)
13 3k5i_A Phosphoribosyl-aminoimi 99.4 2.2E-12 7.5E-17 123.9 14.8 182 28-261 120-314 (403)
14 4fu0_A D-alanine--D-alanine li 99.4 5.9E-13 2E-17 125.7 10.4 196 29-266 137-348 (357)
15 1ehi_A LMDDL2, D-alanine:D-lac 99.4 2.6E-12 9E-17 122.2 14.0 97 29-152 133-234 (377)
16 3ouz_A Biotin carboxylase; str 99.4 5.7E-12 2E-16 121.9 15.4 110 29-161 117-229 (446)
17 3se7_A VANA; alpha-beta struct 99.4 1.1E-12 3.9E-17 123.0 9.0 95 28-152 129-224 (346)
18 3lp8_A Phosphoribosylamine-gly 99.4 2.2E-11 7.6E-16 118.3 17.8 104 28-153 120-224 (442)
19 3glk_A Acetyl-COA carboxylase 99.3 1.3E-11 4.4E-16 123.3 16.2 106 28-160 161-296 (540)
20 3jrx_A Acetyl-COA carboxylase 99.3 1.8E-11 6.2E-16 123.4 17.0 105 29-160 178-312 (587)
21 3r5x_A D-alanine--D-alanine li 99.3 1.8E-12 6.2E-17 118.6 8.2 194 28-267 94-300 (307)
22 3q2o_A Phosphoribosylaminoimid 99.3 6.5E-11 2.2E-15 112.5 19.1 97 27-152 108-206 (389)
23 3mjf_A Phosphoribosylamine--gl 99.3 2.4E-11 8.3E-16 117.7 15.6 103 28-152 104-207 (431)
24 3orq_A N5-carboxyaminoimidazol 99.3 4.8E-12 1.6E-16 120.3 9.7 182 28-261 107-297 (377)
25 4e4t_A Phosphoribosylaminoimid 99.3 1.9E-11 6.4E-16 118.2 14.0 183 28-261 130-326 (419)
26 3lwb_A D-alanine--D-alanine li 99.3 3.7E-12 1.3E-16 121.4 8.5 96 29-152 149-247 (373)
27 2cqy_A Propionyl-COA carboxyla 99.3 5.9E-13 2E-17 103.5 2.3 97 30-147 7-106 (108)
28 1vkz_A Phosphoribosylamine--gl 99.3 3.7E-11 1.3E-15 115.2 15.2 103 28-152 103-206 (412)
29 2i87_A D-alanine-D-alanine lig 99.3 2.3E-11 7.9E-16 114.7 12.8 95 30-152 128-230 (364)
30 2z04_A Phosphoribosylaminoimid 99.3 5.7E-12 1.9E-16 118.3 8.5 164 27-240 88-258 (365)
31 1ulz_A Pyruvate carboxylase N- 99.3 6E-11 2.1E-15 114.6 15.9 102 30-152 113-217 (451)
32 1a9x_A Carbamoyl phosphate syn 99.3 3.2E-11 1.1E-15 129.0 15.1 162 30-236 127-303 (1073)
33 2dzd_A Pyruvate carboxylase; b 99.3 6.5E-11 2.2E-15 114.8 15.3 104 28-152 117-223 (461)
34 2vpq_A Acetyl-COA carboxylase; 99.3 8.8E-11 3E-15 113.4 15.8 109 29-160 112-223 (451)
35 2yrx_A Phosphoribosylglycinami 99.2 1.6E-10 5.5E-15 111.9 15.5 101 30-152 122-223 (451)
36 1kjq_A GART 2, phosphoribosylg 99.2 2.1E-10 7.1E-15 108.3 15.6 100 30-152 111-212 (391)
37 3eth_A Phosphoribosylaminoimid 99.2 9.3E-11 3.2E-15 111.3 10.9 176 29-260 77-264 (355)
38 2w70_A Biotin carboxylase; lig 99.2 3.9E-10 1.3E-14 108.8 15.4 103 29-152 113-219 (449)
39 1w96_A ACC, acetyl-coenzyme A 99.2 8E-10 2.7E-14 110.2 18.1 100 28-152 170-296 (554)
40 2dwc_A PH0318, 433AA long hypo 99.2 5.3E-10 1.8E-14 107.4 15.6 100 29-151 118-219 (433)
41 3n6r_A Propionyl-COA carboxyla 99.1 6.1E-11 2.1E-15 121.4 8.9 170 28-237 112-293 (681)
42 1e4e_A Vancomycin/teicoplanin 99.1 2.2E-11 7.5E-16 113.9 4.8 93 30-152 131-224 (343)
43 4dim_A Phosphoribosylglycinami 99.1 1.6E-09 5.4E-14 102.8 16.7 97 28-150 106-203 (403)
44 1iow_A DD-ligase, DDLB, D-ALA\ 99.1 1.8E-10 6E-15 104.6 9.6 92 29-149 94-194 (306)
45 2fb9_A D-alanine:D-alanine lig 99.1 1.9E-10 6.4E-15 106.9 9.9 94 29-152 116-210 (322)
46 3vmm_A Alanine-anticapsin liga 99.1 1.1E-09 3.9E-14 107.4 15.9 109 27-152 135-258 (474)
47 1a9x_A Carbamoyl phosphate syn 99.1 1.4E-09 4.9E-14 116.3 16.1 98 30-152 673-771 (1073)
48 3u9t_A MCC alpha, methylcroton 99.1 1.5E-10 5.1E-15 118.5 8.2 108 30-160 140-250 (675)
49 2qf7_A Pyruvate carboxylase pr 99.1 1.5E-10 5.3E-15 124.6 7.5 169 29-237 132-313 (1165)
50 2xcl_A Phosphoribosylamine--gl 99.1 1.4E-09 4.9E-14 103.9 13.3 102 29-152 100-202 (422)
51 2pvp_A D-alanine-D-alanine lig 99.0 5E-10 1.7E-14 106.4 9.9 91 29-147 147-243 (367)
52 2yw2_A Phosphoribosylamine--gl 99.0 2.1E-09 7.1E-14 102.9 13.9 101 30-152 101-202 (424)
53 3vot_A L-amino acid ligase, BL 99.0 2.3E-09 7.8E-14 102.7 13.3 102 30-151 111-214 (425)
54 2ip4_A PURD, phosphoribosylami 99.0 2.3E-09 7.9E-14 102.4 12.9 98 29-152 99-197 (417)
55 3ln6_A Glutathione biosynthesi 99.0 5.2E-10 1.8E-14 115.7 8.5 113 31-173 484-606 (750)
56 2qk4_A Trifunctional purine bi 99.0 3.4E-09 1.2E-13 102.5 13.1 101 30-152 127-229 (452)
57 3va7_A KLLA0E08119P; carboxyla 99.0 1.1E-09 3.7E-14 118.6 10.1 109 30-161 143-253 (1236)
58 3ax6_A Phosphoribosylaminoimid 99.0 4.5E-09 1.5E-13 99.1 12.8 89 28-152 97-187 (380)
59 3hbl_A Pyruvate carboxylase; T 99.0 2.6E-10 9E-15 122.7 4.2 109 29-160 116-227 (1150)
60 1uc8_A LYSX, lysine biosynthes 98.8 5E-09 1.7E-13 93.5 5.8 97 29-150 86-186 (280)
61 3ln7_A Glutathione biosynthesi 98.8 1.4E-08 4.8E-13 105.0 9.5 94 31-152 489-588 (757)
62 2pn1_A Carbamoylphosphate synt 98.6 1.5E-07 5E-12 86.5 10.1 88 29-150 112-202 (331)
63 4ffl_A PYLC; amino acid, biosy 98.4 4.6E-07 1.6E-11 84.7 6.8 76 29-152 101-177 (363)
64 2r7k_A 5-formaminoimidazole-4- 98.3 1.6E-06 5.4E-11 82.4 8.5 83 31-144 124-208 (361)
65 2r85_A PURP protein PF1517; AT 98.2 3.6E-06 1.2E-10 76.9 9.9 91 30-152 99-190 (334)
66 1z2n_X Inositol 1,3,4-trisphos 98.1 5.1E-06 1.8E-10 76.0 8.2 92 29-149 96-189 (324)
67 1gsa_A Glutathione synthetase; 97.5 9.9E-05 3.4E-09 66.4 5.9 87 31-148 124-214 (316)
68 1i7n_A Synapsin II; synapse, p 97.5 0.00021 7.2E-09 66.5 7.3 89 33-151 119-211 (309)
69 3df7_A Putative ATP-grAsp supe 97.3 0.00026 8.9E-09 65.1 5.9 72 27-151 106-178 (305)
70 2q7d_A Inositol-tetrakisphosph 97.2 0.0003 1E-08 66.3 5.1 90 30-151 115-217 (346)
71 2pbz_A Hypothetical protein; N 97.2 6.9E-05 2.4E-09 70.0 0.6 80 33-152 100-180 (320)
72 2p0a_A Synapsin-3, synapsin II 97.2 0.00056 1.9E-08 64.5 6.7 89 33-151 136-228 (344)
73 1pk8_A RAT synapsin I; ATP bin 97.0 0.0009 3.1E-08 64.7 6.8 89 33-151 231-323 (422)
74 3t7a_A Inositol pyrophosphate 84.6 0.19 6.5E-06 46.8 0.1 45 30-77 96-153 (330)
75 3n6x_A Putative glutathionylsp 74.3 6 0.00021 38.6 6.9 110 3-140 296-412 (474)
76 2lqo_A Putative glutaredoxin R 50.5 46 0.0016 24.5 6.5 66 32-114 17-85 (92)
77 3k1t_A Glutamate--cysteine lig 32.5 21 0.00072 34.1 2.4 55 72-142 280-335 (432)
78 2pe8_A Splicing factor 45; RRM 32.4 1.5E+02 0.005 22.0 6.9 50 54-116 26-81 (105)
79 1zau_A DNA ligase; AMP; HET: D 31.6 52 0.0018 30.3 4.9 36 30-65 247-283 (328)
80 3tig_A TTL protein; ATP-grAsp, 26.5 54 0.0018 30.9 4.1 42 70-138 148-190 (380)
81 2ols_A Phosphoenolpyruvate syn 25.4 3.4E+02 0.012 27.8 10.2 82 70-155 120-213 (794)
82 1rw1_A Conserved hypothetical 24.8 73 0.0025 24.0 4.0 13 95-107 99-112 (114)
83 3uq8_A DNA ligase; adenylated 22.9 83 0.0028 28.9 4.6 36 30-65 236-272 (322)
84 3v4m_A Splicing factor U2AF 65 22.2 2.3E+02 0.0077 20.8 6.3 48 56-116 30-84 (105)
85 1b04_A Protein (DNA ligase); D 21.3 1.1E+02 0.0037 28.1 5.0 36 30-65 232-268 (318)
86 1ta8_A DNA ligase, NAD-depende 20.6 1.1E+02 0.0039 28.1 5.0 36 30-65 238-274 (332)
87 1x4a_A Splicing factor, argini 20.0 2.5E+02 0.0084 20.1 6.4 51 53-114 34-84 (109)
No 1
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=9.1e-46 Score=357.56 Aligned_cols=222 Identities=39% Similarity=0.635 Sum_probs=210.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCC-eEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~-PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
|+||||++|++|++||||+|++.+++|++|+.++++++ | + |+|+|||+++||||||+|+++..|||+++ |+++++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~l--g-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~ 77 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--N-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG 77 (395)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--T-CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHc--C-CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence 78999999999999999999999999999999999999 8 8 89999998899999999954444999999 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
+++++++++.++++|+++.|..+++++||+|++++.|+|+++.+||.+++|++++|.+||++||.++.++||++++++++
T Consensus 78 ~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~id 157 (395)
T 2fp4_B 78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID 157 (395)
T ss_dssp HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC
T ss_pred HHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecC
Confidence 99999998877788888888888999999999999999999999999877999999999999999988899999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 186 p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
|..++++++|+++++.+|+++.+.+++++++.+||++|.+.|++++||||++++++|.++|+||++.
T Consensus 158 p~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~ 224 (395)
T 2fp4_B 158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKIN 224 (395)
T ss_dssp TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEE
T ss_pred CCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEE
Confidence 9999999999999999999999999999999999999999999999999999999977999999994
No 2
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=2e-43 Score=341.47 Aligned_cols=207 Identities=28% Similarity=0.463 Sum_probs=194.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
|+||||++|++|++||||+|++.+++|++|+.++++++ | +|+|+|+++..+|||| .|||+++ |++++++
T Consensus 1 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~l--G-~PvVvKa~~~~ggkg~-------~GGV~l~~s~ee~~~ 70 (397)
T 3ufx_B 1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF--G-KRVVIKAQVHVGGRGK-------AGGVKLADTPQEAYE 70 (397)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--T-SCEEEEECCSSSCTTT-------TTCEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEEccccCCCCc-------cceEEEeCCHHHHHH
Confidence 89999999999999999999999999999999999999 9 8999999987777766 7999999 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p 186 (294)
++++++++.+ .|..+++++||+|+++++|+|+|+.+||.+++|+|++|.+||+++|.+++++||++++++++|
T Consensus 71 a~~~~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~ 143 (397)
T 3ufx_B 71 KAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDP 143 (397)
T ss_dssp HHHHHTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBT
T ss_pred HHHHhhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCC
Confidence 9999987643 366678999999999999999999999998779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 187 ~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
..++++++|++|+..+|+++. ++++++++.+||++|.+++.+++|||||+++++|.++|+||++.
T Consensus 144 ~~~l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~ 208 (397)
T 3ufx_B 144 HKGFRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIV 208 (397)
T ss_dssp TTBCCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEE
T ss_pred CCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEE
Confidence 889999999999999999999 99999999999999999999999999999999988999999984
No 3
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=4e-43 Score=338.46 Aligned_cols=215 Identities=31% Similarity=0.497 Sum_probs=204.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCe-EEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~P-vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
|+||||++|++|++||||+|++.+++|++|+.++++++ | +| +|+||+...||||| .|||+++ |+++++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~l--G-~P~vVvK~~~~~ggrg~-------~gGV~l~~s~eel~ 70 (388)
T 2nu8_B 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKI--G-AGPWVVKCQVHAGGRGK-------AGGVKVVNSKEDIR 70 (388)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--C-SSCEEEEECCSSSCTTT-------TTCEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHh--C-CCeEEEEEecCCCCCCc-------cCCEEEECCHHHHH
Confidence 78999999999999999999999999999999999999 8 89 99999987788877 6999999 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
+++++++++.++|+|+++.|..+++++||+|++++.|+|+++.+|+.+++|++++|+.||+++|.+++++||++++++++
T Consensus 71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~ 150 (388)
T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388)
T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence 99999998877778888888888899999999989999999999999766999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 186 p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
|..+++++++++|+..+|+++.+++++++++.+||++|.++|++++||||++++++|.++|+||++.
T Consensus 151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~ 217 (388)
T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLG 217 (388)
T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999988999999984
No 4
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=7.9e-37 Score=297.16 Aligned_cols=204 Identities=20% Similarity=0.200 Sum_probs=177.3
Q ss_pred cCCCHHHHHHHHHHcCC---C-C--CCeeeeCCH---HHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE
Q 022648 28 LNIHEYQGAELMAKYGI---N-V--PKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGI---p-v--p~~~~a~s~---eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l 98 (294)
..++||++|++|++||+ | + +++.+++++ +||.++++++ |.+|+|+|+|+++||||| .|||++
T Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~l--g~~pvVvKaqv~~ggRgk-------~GGV~l 74 (425)
T 3mwd_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWL--LSQNLVVKPDQLIKRRGK-------LGLVGV 74 (425)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGG--GTSCEEEEECSSCSCTTT-------TTCCEE
T ss_pred hhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHh--CCCCEEEEeccccCCCCc-------CCeEEE
Confidence 56899999999999999 4 2 347777655 9999999999 757999999999898888 799999
Q ss_pred c-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCC--CeeEEEEEEEcCCCCceEEEecCCCCceeeeccccC
Q 022648 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175 (294)
Q Consensus 99 ~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~--~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~ 175 (294)
+ |++|+++++++|+++.. +++..+..+++|+||+|+++ +.|+|+|+++||. ||+|++|++||++||.++++.
T Consensus 75 ~~s~eev~~aa~~ml~~~~---~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~~ 149 (425)
T 3mwd_A 75 NLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA 149 (425)
T ss_dssp EECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHHS
T ss_pred ECCHHHHHHHHHHHHhhhh---hccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhccc
Confidence 9 99999999999998863 23344567899999999975 5999999999998 899999999999999999753
Q ss_pred CCeEEEEeecCCCCCCHHHHH-HHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 176 PNMIVKVPIDVFNGITDEDAA-KVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 176 pd~v~~~~l~p~~gl~~~~a~-~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
.+++++|..+++.+.++ +++. |+++.+++++++++.+||++|.++|++++|||||+++++| ++|+||++.
T Consensus 150 ----~~~~i~~~~~l~~~~~~~~ll~--g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~ 220 (425)
T 3mwd_A 150 ----QKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAK 220 (425)
T ss_dssp ----EEEEEETTCCCCHHHHHHTTTT--TSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEE
T ss_pred ----ceEecCCccccCHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceee
Confidence 45789998889888874 3333 6788999999999999999999999999999999999998 999999984
No 5
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=306.96 Aligned_cols=204 Identities=20% Similarity=0.203 Sum_probs=180.2
Q ss_pred cCCCHHHHHHHHHHcCCC------CCCeeeeCCH---HHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE
Q 022648 28 LNIHEYQGAELMAKYGIN------VPKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIp------vp~~~~a~s~---eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l 98 (294)
..++||++|+||++||+| .+++.+++++ +||.++++++ +.+|+|+|+|+++||||| .|||++
T Consensus 4 k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~l--g~~pvVvKaQv~~GgRGK-------aGGVkL 74 (829)
T 3pff_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWL--LSQNLVVKPDQLIKRRGK-------LGLVGV 74 (829)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHH--HHSCEEEEECSSCSCTTT-------TTCCEE
T ss_pred hhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHh--CCCCEEEEecccccCCCc-------CCeEEE
Confidence 568999999999999999 5678788765 8888999999 647999999999999999 699999
Q ss_pred c-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCC--CeeEEEEEEEcCCCCceEEEecCCCCceeeeccccC
Q 022648 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175 (294)
Q Consensus 99 ~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~--~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~ 175 (294)
+ |++|+++++++|+++.+ +++..+..+++|+||+|+++ ++|+|+|+++||. +|+|++|.+||++||.++++
T Consensus 75 ~~s~eEa~~aa~~iLg~~~---~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad~- 148 (829)
T 3pff_A 75 NLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK- 148 (829)
T ss_dssp EECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHHH-
T ss_pred ECCHHHHHHHHHHHHHHHH---hhcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhhh-
Confidence 9 99999999999998864 22334567899999999975 5999999999998 89999999999999999874
Q ss_pred CCeEEEEeecCCCCCCHHHH-HHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648 176 PNMIVKVPIDVFNGITDEDA-AKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG 252 (294)
Q Consensus 176 pd~v~~~~l~p~~gl~~~~a-~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~ 252 (294)
..+++++|..+++.+++ ++++. |+++.+++++++++.+||++|.+.|++++|||||+++++| ++|+||++.
T Consensus 149 ---~~~~~I~p~~gl~~~~a~~~ll~--g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~ 220 (829)
T 3pff_A 149 ---AQKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAK 220 (829)
T ss_dssp ---SEEEEEETTCCCCHHHHHHTTTT--TSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEE
T ss_pred ---ceEEecCCccccCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceee
Confidence 35689999999999998 44443 5788999999999999999999999999999999999998 999999984
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.4e-34 Score=255.17 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=174.5
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeee-cCCCCCcccccCCcCcEEE-c-C
Q 022648 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQIL-AGGRGLGTFKSGLKGGVHI-V-K 100 (294)
Q Consensus 24 ~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~-~ggrgK~~~~~sd~GGV~l-~-s 100 (294)
+.+++.++|+++|++|++||||+|++.++++.+|+.++++++ | ||+|+||+.. .+|||+ .|||.+ . |
T Consensus 14 ~~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~l--g-~PvvvKp~~~~~~~r~~-------~gGv~~~v~~ 83 (238)
T 1wr2_A 14 KQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEI--G-YPVVLKLMSPQILHKSD-------AKVVMLNIKN 83 (238)
T ss_dssp HTTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHH--C-SSEEEEEECTTCCCHHH-------HTCEEEEECS
T ss_pred hcCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHh--C-CCEEEEEccCCCCcCCc-------cCCEEEeCCC
Confidence 456788999999999999999999999999999999999999 8 8999999865 444444 799999 4 9
Q ss_pred HHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEE
Q 022648 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (294)
Q Consensus 101 ~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~ 180 (294)
+++++++++++++....+ ..+...++++||+|++++.|+++++..|+. +||++++| .||+++|.+++ ..
T Consensus 84 ~~el~~a~~~~~~~~~~~----~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~-~g~v~~~~-~Gg~~iE~~~d----~~- 152 (238)
T 1wr2_A 84 EEELKKKWEEIHENAKKY----RPDAEILGVLVAPMLKPGREVIIGVTEDPQ-FGHAIMFG-LGGIFVEILKD----VT- 152 (238)
T ss_dssp HHHHHHHHHHHHHHHHHH----CTTCCCCEEEEEECCCCCEEEEEEEEEETT-TEEEEEEE-ECSTTHHHHCC----CE-
T ss_pred HHHHHHHHHHHHHhhhhh----CCCCccceEEEEECCCCCeEEEEEEEeCCC-CCcEEEEe-cCCceeeeecc----ee-
Confidence 999999999998764211 234456899999999989999999999997 48999999 99999998764 22
Q ss_pred EEeecCCCCCCHHHHHHHHHhC-------CCCc---ccHHHHHHHHHHHHHhhccCC--CcEEEeeceeEecCC-cEEEE
Q 022648 181 KVPIDVFNGITDEDAAKVVDGL-------APKV---ADRNDAIEQVKKLYKLFCESD--CTLLEVSMNFYISLV-LLICM 247 (294)
Q Consensus 181 ~~~l~p~~gl~~~~a~~~~~~l-------g~~~---~~~~~l~~~l~~L~~l~~~~d--~~~LEINPL~v~~dg-~~val 247 (294)
+.++| ++.+.+++|.+.+ |+++ .|++++++++.+||+++.+.+ +.++||||++++++| .++|+
T Consensus 153 -~~~~P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~al 228 (238)
T 1wr2_A 153 -FRLVP---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIV 228 (238)
T ss_dssp -EEESS---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEEC
T ss_pred -eecCC---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEE
Confidence 46777 9999999999877 7776 799999999999999998876 889999999999985 49999
Q ss_pred EEEEe
Q 022648 248 SLLVG 252 (294)
Q Consensus 248 Da~i~ 252 (294)
||++.
T Consensus 229 Da~~~ 233 (238)
T 1wr2_A 229 DSRII 233 (238)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99984
No 7
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.57 E-value=8.3e-15 Score=140.40 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHH----HHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~e----Ea~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
..++..+|++|+++|||+|++..+++.+ ++.++++++ + +|+|+||. .++.++ ||.+. |+++
T Consensus 157 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~--~ggss~---------Gv~~v~~~~e 222 (386)
T 3e5n_A 157 AMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQL--G-LPLFVKPA--NQGSSV---------GVSQVRTADA 222 (386)
T ss_dssp HHBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHH--C-SSEEEEES--BSCSST---------TCEEECSGGG
T ss_pred HhCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhc--C-CCEEEEEC--CCCcCC---------CEEEECCHHH
Confidence 3578899999999999999999999888 788888999 8 89999997 444455 77777 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEe
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~ 183 (294)
+.+++++++.. + ..++||++++ +.|+.+++..|+. .+++..+ |...
T Consensus 223 l~~a~~~a~~~----------~---~~vlVEe~I~-G~E~~v~vl~~~~--~~~~~~g-------ei~~----------- 268 (386)
T 3e5n_A 223 FAAALALALAY----------D---HKVLVEAAVA-GREIECAVLGNAV--PHASVCG-------EVVV----------- 268 (386)
T ss_dssp HHHHHHHHTTT----------C---SEEEEEECCC-SEEEEEEEECSSS--CEEEEEE-------EECC-----------
T ss_pred HHHHHHHHHhC----------C---CcEEEEcCCC-CeEEEEEEEeCCC--ceEEEeE-------EEEe-----------
Confidence 99998876532 1 5799999999 6999999998875 4444332 1100
Q ss_pred ecCCCCCCHHHHHHHHH-------hCCCCcccHHHHHHHHHHHHHh-----------hccC--CCcEEEeeceeEecCCc
Q 022648 184 IDVFNGITDEDAAKVVD-------GLAPKVADRNDAIEQVKKLYKL-----------FCES--DCTLLEVSMNFYISLVL 243 (294)
Q Consensus 184 l~p~~gl~~~~a~~~~~-------~lg~~~~~~~~l~~~l~~L~~l-----------~~~~--d~~~LEINPL~v~~dg~ 243 (294)
..++.++.+..... ...++....+++.++..++++. +.+. +..++||||....+..+
T Consensus 269 ---~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 269 ---HDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRIS 345 (386)
T ss_dssp --------------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred ---CCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCccC
Confidence 00011111111110 0112233334444444444443 2232 35679999987655444
Q ss_pred EEEEEEEEech--hhHHHHHhhhhHH
Q 022648 244 LICMSLLVGGQ--VELVIHLVGGSLC 267 (294)
Q Consensus 244 ~valDa~i~~~--~~~~~~~~~~~~~ 267 (294)
.+..-++..|. .+++.+|++.|++
T Consensus 346 ~~p~~~~~~Gi~~~~li~~li~~a~~ 371 (386)
T 3e5n_A 346 VYPKLWQASGLDYRGLITRLIELALE 371 (386)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 44444444554 9999999998875
No 8
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.52 E-value=4.2e-14 Score=134.05 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=81.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHH----HHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~e----Ea~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
...+++.+|++|+++|||+|++..+++.+ ++.++++++ + +|+|+||. .++.++ ||.+. |++
T Consensus 137 ~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~--~ggss~---------Gv~~v~~~~ 202 (364)
T 3i12_A 137 ACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRL--G-LPLFVKPA--NQGSSV---------GVSKVANEA 202 (364)
T ss_dssp HHHCHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHH--C-SSEEEEET--TCCTTT---------TCEEESSHH
T ss_pred HHHCHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHHhc--C-CCEEEEEC--CCCCCc---------CeEEeCCHH
Confidence 34578999999999999999999998887 888888999 8 89999997 555455 77777 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++.++++++.... ..++||++++ +.|+.+++..|+.
T Consensus 203 el~~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~ 238 (364)
T 3i12_A 203 QYQQAVALAFEFD-------------HKVVVEQGIK-GREIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHHHHhcC-------------CcEEEEcCcC-CeEEEEEEEeCCC
Confidence 9999988765431 5799999999 5999999998875
No 9
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.52 E-value=2.2e-14 Score=132.75 Aligned_cols=196 Identities=18% Similarity=0.127 Sum_probs=118.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH----HHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI----QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa----~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
...++...|++|+++|||+|++..+++.+++.+++ +++ + +|+|+||. .++.++ ||.+. |.+
T Consensus 104 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~--g-~PvvvKP~--~~~~s~---------Gv~~v~~~~ 169 (317)
T 4eg0_A 104 LGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKL--G-LPLFVKPA--SEGSSV---------AVLKVKTAD 169 (317)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHH--C-SCEEEEEC--C--------------CCEEECSGG
T ss_pred HHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhc--C-CCEEEEeC--CCCCCC---------CEEEECCHH
Confidence 34578999999999999999999999888887777 889 8 89999997 444455 67777 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEE
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV 182 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~ 182 (294)
++.++++++... -..++||+|++.+.|+.+++..|+. .|++...+.++. .+--.+-.++.. .
T Consensus 170 el~~a~~~~~~~-------------~~~~lvEe~i~~G~E~~v~vl~~~~--~~~~~i~~~~~~-~~~~~k~~~g~~--~ 231 (317)
T 4eg0_A 170 ALPAALSEAATH-------------DKIVIVEKSIEGGGEYTACIAGDLD--LPLIKIVPAGEF-YDYHAKYVANDT--Q 231 (317)
T ss_dssp GHHHHHHHHTTT-------------CSEEEEEECCCSSEEEEEEEETTCC--CCCEEEEC----------------C--E
T ss_pred HHHHHHHHHHhC-------------CCeEEEEcCCCCCcEEEEEEECCcc--cceEEEeeCCce-echhhcccCCCe--e
Confidence 999988775422 1579999999878999999998864 455544423321 110000000010 1
Q ss_pred eecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeeceeEecCCcEEEEEEEEec
Q 022648 183 PIDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNFYISLVLLICMSLLVGG 253 (294)
Q Consensus 183 ~l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~v~~dg~~valDa~i~~ 253 (294)
.+.|. .++.+. +.++.+.+|++|... .+++.+ .+..++||||....+..+.+..-++..|
T Consensus 232 ~~~P~-~l~~~~~~~l~~~a~~~~~~lg~~G~~~----------vD~~~~~~g~~~vlEiN~~pg~t~~s~~p~~~~~~G 300 (317)
T 4eg0_A 232 YLIPC-GLPAEQETELKRIARRAFDVLGCTDWGR----------ADFMLDAAGNAYFLEVNTAPGMTDHSLPPKAARSIG 300 (317)
T ss_dssp EESSC-SSCHHHHHHHHHHHHHHHHTTTCCSEEE----------EEEEECTTCCEEEEEEESSCCCSTTSHHHHHHHHTT
T ss_pred EEcCC-CCCHHHHHHHHHHHHHHHHHhCCCceEE----------EEEEEeCCCCEEEEEeeCCCCCCcccHHHHHHHHcC
Confidence 12221 144332 333334555543211 122333 3467799999765444333333333445
Q ss_pred h--hhHHHHHhhhhH
Q 022648 254 Q--VELVIHLVGGSL 266 (294)
Q Consensus 254 ~--~~~~~~~~~~~~ 266 (294)
. .+++.+|++.|+
T Consensus 301 ~~~~~l~~~li~~a~ 315 (317)
T 4eg0_A 301 IGYSELVVKVLSLTL 315 (317)
T ss_dssp CCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh
Confidence 3 888888887664
No 10
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.44 E-value=3.8e-13 Score=128.38 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=76.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHHHHHHhCCCCCe-EEEEEeeecCCCCCcccccCCcCcEEEc-CH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eE----a~~aa~~l~~g~~P-vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ 101 (294)
...++...|++|+++|||+|++..+++.++ +.++.+++ + +| +|+||. .+|.++ ||.+. |.
T Consensus 137 ~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~l--g-~P~vvVKP~--~ggss~---------Gv~~v~~~ 202 (372)
T 3tqt_A 137 VCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRW--G-TSELFVKAV--SLGSSV---------ATLPVKTE 202 (372)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC------CEEEEES--SCCSGG---------GEEEECSH
T ss_pred HHhCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhc--C-CCeEEEEEC--CCCCCC---------CEEEECCH
Confidence 345788999999999999999999987664 45677788 8 89 999997 455556 88888 99
Q ss_pred HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 102 eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++.++.++.... + ..++||++++ |.|+.+++..|+.
T Consensus 203 ~eL~~a~~~a~~~----------~---~~vlVEe~I~-G~E~~v~vl~~~~ 239 (372)
T 3tqt_A 203 TEFTKAVKEVFRY----------D---DRLMVEPRIR-GREIECAVLGNGA 239 (372)
T ss_dssp HHHHHHHHHHTTT----------C---SCEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHHHHHhc----------C---CCEEEECCCC-CEEEEEEEEeCCC
Confidence 9999988775432 1 4799999999 7999999998863
No 11
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.43 E-value=4.8e-13 Score=128.19 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHcC-CCCCCeeeeCCH----HHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 29 NIHEYQGAELMAKYG-INVPKGLAVASV----DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 29 ~L~E~~ak~lL~~yG-Ipvp~~~~a~s~----eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
..++...|++|+++| ||+|++..+++. +++.++++++ + +|+|+||. .++.++ ||.+. |++
T Consensus 159 ~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~--~ggss~---------GV~~v~~~~ 224 (383)
T 3k3p_A 159 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKL--I-YPVFVKPA--NMGSSV---------GISKAENRT 224 (383)
T ss_dssp HHCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHC--C-SSEEEEEC--C---------------CEEESSHH
T ss_pred HhCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHhc--C-CCEEEEeC--CCCCCC---------CEEEECCHH
Confidence 347889999999999 999999999776 5777888889 8 89999997 444455 77778 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++.+++++..... ..++||++++ |.|+.+++..|..
T Consensus 225 el~~al~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~d~~ 260 (383)
T 3k3p_A 225 DLKQAIALALKYD-------------SRVLIEQGVD-AREIEVGILGNTD 260 (383)
T ss_dssp HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHHHHhCC-------------CeEEEEcCCC-CeEEEEEEEeCCC
Confidence 9999888765321 4799999999 8999999998753
No 12
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.42 E-value=1.7e-12 Score=122.14 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=109.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea 104 (294)
+..-+++..|++|+++|||+|++..+++.+|+.++++++ + +|+|+||. .++ .|+ ||.+. |.+++
T Consensus 92 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~~~~~g~---------Gv~~v~~~~el 157 (369)
T 3aw8_A 92 EVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRV--G-LPALLKTR--RGGYDGK---------GQALVRTEEEA 157 (369)
T ss_dssp HHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTT--C-SSEEEEEC--CC---------------EEEECSHHHH
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHc--C-CCEEEEEc--CCCCCcc---------eEEEECCHHHH
Confidence 345688999999999999999999999999999999999 8 89999997 333 456 88888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.++++++. -..++||+|++.+.|+.+.+..|+. |.++.++ . .+.... .......+
T Consensus 158 ~~~~~~~~---------------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~-~----~~~~~~---~~~~~~~~ 212 (369)
T 3aw8_A 158 LEALKALG---------------GRGLILEGFVPFDREVSLLAVRGRT--GEVAFYP-L----VENRHW---GGILRLSL 212 (369)
T ss_dssp HHHHTTTC---------------SSSEEEEECCCCSEEEEEEEEECTT--SCEEECC-C----EEEEEE---TTEEEEEE
T ss_pred HHHHHhcC---------------CCcEEEEEcCCCCEEEEEEEEECCC--CCEEEEC-C----eeeeee---CCEEEEEE
Confidence 88766531 1469999999988999999999975 4444443 1 122211 11222234
Q ss_pred cCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc-CCCcEEEeeceeEecC
Q 022648 185 DVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE-SDCTLLEVSMNFYISL 241 (294)
Q Consensus 185 ~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~-~d~~~LEINPL~v~~d 241 (294)
.|...++.+. +.++++.+|+.|... .+++.+ .+..++||||-+..+.
T Consensus 213 ~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~----------vd~~~~~~~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 213 APAPGASEALQKKAEAYALRAMEALDYVGVLA----------LEFFQVGEELLFNEMAPRVHNSG 267 (369)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEE----------EEEEEETTEEEEEEEESSCCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEE----------EEEEEECCcEEEEEEeCCcCCcc
Confidence 4433355432 333444555554211 123333 2367799999765443
No 13
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.41 E-value=2.2e-12 Score=123.87 Aligned_cols=182 Identities=16% Similarity=0.167 Sum_probs=122.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeC--CHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVA--SVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~--s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~ee 103 (294)
..-+++..|++|+++|||+|++..++ +.+|+.++++++ | +|+|+||. .++ .|| ||.+. |+++
T Consensus 120 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~--g-~P~VvKp~--~gg~~g~---------Gv~~v~~~~e 185 (403)
T 3k5i_A 120 TIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQL--G-YPLMLKSK--TMAYDGR---------GNFRVNSQDD 185 (403)
T ss_dssp HHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHH--C-SSEEEEES--SSCCTTT---------TEEEECSTTS
T ss_pred HhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHh--C-CCEEEEeC--CCCcCCC---------CEEEECCHHH
Confidence 44678899999999999999999999 999999999999 8 89999997 444 567 88888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEe
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~ 183 (294)
+.++++.+- + ..++||+|++++.|+.+.+.+|+. | +..+. . +|.... +......
T Consensus 186 l~~a~~~~~------------~---~~~lvEe~i~~~~E~sv~v~~~~~--g-~~~~p-~----~~~~~~---~g~~~~~ 239 (403)
T 3k5i_A 186 IPEALEALK------------D---RPLYAEKWAYFKMELAVIVVKTKD--E-VLSYP-T----VETVQE---DSICKLV 239 (403)
T ss_dssp HHHHHHHTT------------T---SCEEEEECCCEEEEEEEEEEECSS--C-EEECC-C----EEEEEE---TTEEEEE
T ss_pred HHHHHHhcC------------C---CcEEEecCCCCCeEEEEEEEEcCC--C-EEEeC-C----eeeEEe---CCEEEEE
Confidence 998877541 1 469999999988999999999976 4 33332 1 222221 1223333
Q ss_pred ecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEecCCcEEEEEEEEech
Q 022648 184 IDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYISLVLLICMSLLVGGQ 254 (294)
Q Consensus 184 l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~dg~~valDa~i~~~ 254 (294)
+.|...++++. +.++++.+|+.|... .+++.+. +..++||||-+..+ | .+..++.-.++
T Consensus 240 ~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~----------ve~~~~~dg~~~v~EiNpR~~~s-g-~~~~~~~~~s~ 307 (403)
T 3k5i_A 240 YAPARNVSDAINQKAQELARKAVAAFDGKGVFG----------VEMFLLEDDSIMLCEIASRIHNS-G-HYTIEGCALSQ 307 (403)
T ss_dssp EESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEE----------EEEEEETTSCEEEEEEESSCCGG-G-TTHHHHBSSCH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEE----------EEEEEeCCCcEEEEEeecCCCCC-C-ceeeeecCCCH
Confidence 44544355542 445555666655211 1334433 36779999976543 2 23344443445
Q ss_pred hhHHHHH
Q 022648 255 VELVIHL 261 (294)
Q Consensus 255 ~~~~~~~ 261 (294)
++.-.+.
T Consensus 308 ~~~~~ra 314 (403)
T 3k5i_A 308 FDAHLRA 314 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
No 14
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.41 E-value=5.9e-13 Score=125.70 Aligned_cols=196 Identities=16% Similarity=0.130 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHH---HHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDE---VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eE---a~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
..++..+|++|+++|||+|++..+++.++ +.++++++ | ||+|+||. .+|.|+ ||.++ |.+++
T Consensus 137 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~--~gg~s~---------Gv~~v~~~~el 202 (357)
T 4fu0_A 137 CMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANL--T-YPLFIKPV--RAGSSF---------GITKVIEKQEL 202 (357)
T ss_dssp HHCHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHC--C-SSEEEEET--TCSSST---------TCEEESSHHHH
T ss_pred HhCHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhc--C-CCEEEEEC--CCCCCC---------ceEEeccHHhH
Confidence 35788999999999999999998865443 45667788 8 89999996 555566 77888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCC-ceEEEecCCCCceeeeccccCCCeEEEEe
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA-GPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~-gPvil~s~~GGv~vE~l~~~~pd~v~~~~ 183 (294)
.++.+..... + ..+++|++++ ++|+.+++..|.... .++...-...+. .+--....++... .
T Consensus 203 ~~~~~~a~~~----------~---~~vlvE~~i~-G~e~~v~vl~~~~~~~~~v~~~~~~~~~-~d~~~k~~~~~~~--~ 265 (357)
T 4fu0_A 203 DAAIELAFEH----------D---TEVIVEETIN-GFEVGCAVLGIDELIVGRVDEIELSSGF-FDYTEKYTLKSSK--I 265 (357)
T ss_dssp HHHHHHHTTT----------C---SEEEEEECCC-SEEEEEEEEESSSEEECCCEEEEECHHH-HTSCSBCSSCCEE--E
T ss_pred HHHHHHHhcc----------C---CeEEEEEecC-CEEEEEEEEecCCceEEEEEEEEccccc-ccccccccCCCce--E
Confidence 9888765432 1 5799999997 899999999886521 011110000000 0000111112221 1
Q ss_pred ecCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEecCCcEEEEEEEEech
Q 022648 184 IDVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYISLVLLICMSLLVGGQ 254 (294)
Q Consensus 184 l~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~dg~~valDa~i~~~ 254 (294)
+.|. .++++. |.++.+.+|++|... .+++.+. +..++||||....+..+.++.-++..|.
T Consensus 266 ~~pa-~l~~~~~~~i~~~A~~~~~aLg~~G~~~----------VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~ 334 (357)
T 4fu0_A 266 YMPA-RIDAEAEKRIQEAAVTIYKALGCSGFSR----------VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGL 334 (357)
T ss_dssp ESSC-SCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTC
T ss_pred ecCC-CCCHHHHHHHHHHHHHHHHHhCCcceEE----------EEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCc
Confidence 2221 255432 334455666654311 1334433 4567999998764444344444445564
Q ss_pred --hhHHHHHhhhhH
Q 022648 255 --VELVIHLVGGSL 266 (294)
Q Consensus 255 --~~~~~~~~~~~~ 266 (294)
.|++.+|++-|+
T Consensus 335 ~~~~li~~li~~al 348 (357)
T 4fu0_A 335 SFSQMLDKLIGLYV 348 (357)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHh
Confidence 899999988664
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.40 E-value=2.6e-12 Score=122.20 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eE----a~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ee 103 (294)
..+++..|++|+++|||+|++..+++.++ +.++++++ + +|+|+||. .++.++ ||.+. |.++
T Consensus 133 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~--g-~PvvVKP~--~~~~s~---------Gv~~v~~~~e 198 (377)
T 1ehi_A 133 SFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAEL--G-NIVFVKAA--NQGSSV---------GISRVTNAEE 198 (377)
T ss_dssp HHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHH--C-SCEEEEES--SCCTTT---------TEEEECSHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhc--C-CCEEEEeC--CCCCCc---------CEEEeCCHHH
Confidence 35788999999999999999999988765 66777889 8 89999997 444455 78888 9999
Q ss_pred HHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 104 a~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.++.++.... + ..++||+++++..|+.+++..|+.
T Consensus 199 l~~a~~~~~~~----------~---~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 199 YTEALSDSFQY----------D---YKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp HHHHHHHHTTT----------C---SCEEEEECCCCSCEEEEEEEESSS
T ss_pred HHHHHHHHHhc----------C---CcEEEEcCCCCCceEEEEEEcCCC
Confidence 99988875432 1 479999999944899999998864
No 16
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.38 E-value=5.7e-12 Score=121.86 Aligned_cols=110 Identities=19% Similarity=0.307 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
.-+++..|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||. .|+.|+ ||.+. |++++.
T Consensus 117 ~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~--g-~PvvvKp~--~g~gg~---------Gv~~v~~~~el~ 182 (446)
T 3ouz_A 117 MSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEI--G-YPVILKAA--AGGGGR---------GMRVVENEKDLE 182 (446)
T ss_dssp HHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHH--C-SSEEEEET--TCCTTC---------SEEEECSGGGHH
T ss_pred hCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHh--C-CCEEEEEC--CCCCCC---------CEEEECCHHHHH
Confidence 3578899999999999999997 789999999999999 8 89999997 454466 88888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s 161 (294)
++++++...... .. + -..++||+|+++..|+.+.+..|.. |.++.++
T Consensus 183 ~~~~~~~~~~~~--~~---~--~~~~lvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 229 (446)
T 3ouz_A 183 KAYWSAESEAMT--AF---G--DGTMYMEKYIQNPRHIEVQVIGDSF--GNVIHVG 229 (446)
T ss_dssp HHHHHHHHHHHH--HH---S--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred HHHHHHHHHHHH--hc---C--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 998887654210 00 1 1469999999977999999999986 4555543
No 17
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.36 E-value=1.1e-12 Score=123.02 Aligned_cols=95 Identities=21% Similarity=0.223 Sum_probs=76.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
...++...|++|+++|||+|++..+++.+ ..+++++ + +|+|+||. .++.++ ||.+. +++++.+
T Consensus 129 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~~~~~~l--g-~PvvvKP~--~~~~s~---------Gv~~v~~~~el~~ 192 (346)
T 3se7_A 129 LCMDKSLTYLVARSAGIATPNFWTVTADE--KIPTDQL--T-YPVFVKPA--RSGSSF---------GVSKVAREEDLQG 192 (346)
T ss_dssp HHHSHHHHHHHHHHTTCBCCCEEEEETTS--CCCTTTC--C-SSEEEEES--SCCTTT---------TCEEECSHHHHHH
T ss_pred HHhCHHHHHHHHHHcCcCcCCEEEEcCcH--HHHHHhc--C-CCEEEEeC--CCCCCc---------CEEEECCHHHHHH
Confidence 34578899999999999999999998765 3345567 7 89999997 444455 77777 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.+++... + ..++||++++ +.|+.+++..|..
T Consensus 193 a~~~~~~~----------~---~~vlvEe~I~-G~E~~v~vl~~~~ 224 (346)
T 3se7_A 193 AVEAAREY----------D---SKVLIEEAVI-GTEIGCAVMGNGP 224 (346)
T ss_dssp HHHHHTTT----------C---SEEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHHhC----------C---CcEEEEeCcC-CEEEEEEEEecCC
Confidence 88876432 1 5799999999 8999999999864
No 18
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.35 E-value=2.2e-11 Score=118.34 Aligned_cols=104 Identities=27% Similarity=0.270 Sum_probs=86.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-++..+|++|+++|||+|++..+++.+|+.++++++ + +|+|+||...+ .|| ||.+. |.+|+.+
T Consensus 120 ~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~--g-~PvVvKp~~~~--gg~---------GV~iv~~~eel~~ 185 (442)
T 3lp8_A 120 LESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKH--K-LPLVVKADGLA--QGK---------GTVICHTHEEAYN 185 (442)
T ss_dssp HHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHS--C-SSEEEEESSCC--TTT---------SEEEESSHHHHHH
T ss_pred HhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHc--C-CcEEEeECCCC--CCC---------eEEEeCCHHHHHH
Confidence 34578899999999999999999999999999999999 8 89999997433 356 88888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~ 153 (294)
++++++... ..|..-..++||||++ |.|+.+.+..|...
T Consensus 186 a~~~~~~~~-------~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~~ 224 (442)
T 3lp8_A 186 AVDAMLVHH-------KFGEAGCAIIIEEFLE-GKEISFFTLVDGSN 224 (442)
T ss_dssp HHHHHHTSC-------TTGGGGSSEEEEECCC-SEEEEEEEEEESSC
T ss_pred HHHHHHhhc-------ccCCCCCeEEEEEeec-CcEEEEEEEECCCe
Confidence 999887431 0122235799999999 89999999998763
No 19
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.35 E-value=1.3e-11 Score=123.32 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=84.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeee-----------------------------eCCHHHHHHHHHHhCCCCCeEEEEEee
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQI 78 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~-----------------------------a~s~eEa~~aa~~l~~g~~PvVlKaq~ 78 (294)
..-++..+|++|+++|||+|++.. +++.+|+.++++++ | ||+|+||.
T Consensus 161 ~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~i--g-yPvVVKp~- 236 (540)
T 3glk_A 161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERI--G-FPLMIKAS- 236 (540)
T ss_dssp ---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHH--C-SSEEEEET-
T ss_pred HhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhc--C-CcEEEEEC-
Confidence 345799999999999999999987 88999999999999 8 89999997
Q ss_pred ecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceE
Q 022648 79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI 157 (294)
Q Consensus 79 ~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPv 157 (294)
.|+.|| ||++. |++++.++++++.... . -..++||+|+++..|+.+.+..|+. |.+
T Consensus 237 -~ggGG~---------Gv~iv~~~~eL~~a~~~~~~~~--------~---~~~vlVEe~I~g~rei~V~vl~d~~--G~v 293 (540)
T 3glk_A 237 -EGGGGK---------GIRKAESAEDFPILFRQVQSEI--------P---GSPIFLMKLAQHARHLEVQILADQY--GNA 293 (540)
T ss_dssp -TCC-------------EEEECSTTTHHHHHHHHHHHS--------T---TCCEEEEECCSSEEEEEEEEEECTT--SCE
T ss_pred -CCCCCC---------CEEEECCHHHHHHHHHHHHhhc--------c---CCCEEEEEecCCCcEEEEEEEEcCC--CCE
Confidence 555567 88888 9999999988876432 0 1479999999966999999999985 555
Q ss_pred EEe
Q 022648 158 IIG 160 (294)
Q Consensus 158 il~ 160 (294)
+.+
T Consensus 294 v~l 296 (540)
T 3glk_A 294 VSL 296 (540)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 20
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.34 E-value=1.8e-11 Score=123.40 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCeee-----------------------------eCCHHHHHHHHHHhCCCCCeEEEEEeee
Q 022648 29 NIHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQIL 79 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~-----------------------------a~s~eEa~~aa~~l~~g~~PvVlKaq~~ 79 (294)
.-++..+|++|+++|||+|++.. +++.+|+.++++++ | ||+||||.
T Consensus 178 ~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~i--G-yPvVVKp~-- 252 (587)
T 3jrx_A 178 LGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERI--G-FPLMIKAS-- 252 (587)
T ss_dssp HCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHH--C-SSEEEEET--
T ss_pred hCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhc--C-CeEEEEeC--
Confidence 34789999999999999999987 88999999999999 8 89999997
Q ss_pred cCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEE
Q 022648 80 AGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII 158 (294)
Q Consensus 80 ~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvi 158 (294)
.|+.|| ||++. |++++.++++++.... . -..++||+|+++..|+.+.+..|+. |.++
T Consensus 253 ~GgGGk---------Gv~iV~s~eEL~~a~~~a~~~~--------~---~~~vlVEeyI~g~rei~V~vl~D~~--G~vv 310 (587)
T 3jrx_A 253 EGGGGK---------GIRKAESAEDFPILFRQVQSEI--------P---GSPIFLMKLAQHARHLEVQILADQY--GNAV 310 (587)
T ss_dssp TCCSSS---------SEEEECSTTTHHHHHHHHHHHS--------T---TCCEEEEECCCSCEEEEEEEEECSS--SCEE
T ss_pred CCCCCC---------CeEEeCCHHHHHHHHHHHHhhc--------c---CCCEEEEEecCCCcEEEEEEEEcCC--CCEE
Confidence 555577 89988 9999999988876432 1 1479999999977999999999985 5555
Q ss_pred Ee
Q 022648 159 IG 160 (294)
Q Consensus 159 l~ 160 (294)
.+
T Consensus 311 ~l 312 (587)
T 3jrx_A 311 SL 312 (587)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 21
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.33 E-value=1.8e-12 Score=118.58 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=117.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHH-HHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK-AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~-aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
...++...|++|+++|||+|++.++++.+++.. +++++ + +|+|+||. .++.|+ ||.+. +.+++.
T Consensus 94 ~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~--~-~P~vvKP~--~~~~s~---------Gv~~v~~~~el~ 159 (307)
T 3r5x_A 94 ICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKL--G-FPLVVKPN--SGGSSV---------GVKIVYDKDELI 159 (307)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHH--C-SSEEEEEC--C----C---------CCEEECSHHHHH
T ss_pred HHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhc--C-CCEEEEeC--CCCCCC---------CEEEeCCHHHHH
Confidence 345788999999999999999999988777654 77788 8 89999997 333355 77788 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccC-CCeEEEEee
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY-PNMIVKVPI 184 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~-pd~v~~~~l 184 (294)
++++++.... ..++||+|++ |.|+.+.+..++. ..++-+.. ..+.. ....+. .......|.
T Consensus 160 ~~~~~~~~~~-------------~~~lvee~i~-G~e~~v~v~~g~~-~~~~~~~~-~~~~~--~~~~~~~~~g~~~~p~ 221 (307)
T 3r5x_A 160 SMLETVFEWD-------------SEVVIEKYIK-GEEITCSIFDGKQ-LPIISIRH-AAEFF--DYNAKYDDASTIEEVI 221 (307)
T ss_dssp HHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEETTEE-CCCEEEEE-EEEEE--TTEEEEEEEEEEEEEC
T ss_pred HHHHHHHhcC-------------CCEEEECCcC-CEEEEEEEECCEE-eeEEEEEc-CCccc--ChhhcCCCCCCeEecC
Confidence 9988865421 5799999999 7999999964422 12212221 11100 000000 000111122
Q ss_pred cCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc-CCCcEEEeeceeEecCCcEEEEEEEEech--
Q 022648 185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE-SDCTLLEVSMNFYISLVLLICMSLLVGGQ-- 254 (294)
Q Consensus 185 ~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~-~d~~~LEINPL~v~~dg~~valDa~i~~~-- 254 (294)
.++++ .+.++.+.+|++|... .+++.+ .+..++||||....+..+.+..-++..|.
T Consensus 222 ----~l~~~~~~~i~~~a~~~~~~lg~~G~~~----------vD~~~~~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~ 287 (307)
T 3r5x_A 222 ----ELPAELKERVNKASLACYKALKCSVYAR----------VDMMVKDGIPYVMEVNTLPGMTQASLLPKSADAAGIHY 287 (307)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTCCSEEE----------EEEEEETTEEEEEEEESSCCCSTTSHHHHHHHHTTCCH
T ss_pred ----CCCHHHHHHHHHHHHHHHHHhCCCceEE----------EEEEEECCeEEEEEEcCCCCCCccCHHHHHHHHcCCCH
Confidence 14443 2444555666654211 122333 34567999998664443333333344454
Q ss_pred hhHHHHHhhhhHH
Q 022648 255 VELVIHLVGGSLC 267 (294)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (294)
.+++.++++.++.
T Consensus 288 ~~li~~ll~~a~~ 300 (307)
T 3r5x_A 288 SKLLDMIIETSLR 300 (307)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8889999887764
No 22
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.33 E-value=6.5e-11 Score=112.49 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=82.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea 104 (294)
+..-+++..|++|+++|||+|++..+++.+|+.++++++ | +|+|+||. .++ .|+ |+.+. |++++
T Consensus 108 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~~~~~g~---------Gv~~v~~~~el 173 (389)
T 3q2o_A 108 SKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAEL--S-YPSVLKTT--TGGYDGK---------GQVVLRSEADV 173 (389)
T ss_dssp HHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--C-SSEEEEES--SCCSSSC---------CEEEESSGGGH
T ss_pred HHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhc--C-CCEEEEeC--CCCCCCC---------CeEEECCHHHH
Confidence 345678999999999999999999999999999999999 8 89999996 343 357 88888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.++++.+.. ..++||+|++++.|+.+.+.+|..
T Consensus 174 ~~~~~~~~~---------------~~~lvEe~i~g~~E~~v~~~~~~~ 206 (389)
T 3q2o_A 174 DEARKLANA---------------AECILEKWVPFEKEVSVIVIRSVS 206 (389)
T ss_dssp HHHHHHHHH---------------SCEEEEECCCCSEEEEEEEEECTT
T ss_pred HHHHHhcCC---------------CCEEEEecccCceEEEEEEEEcCC
Confidence 988776421 468999999977999999999875
No 23
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.32 E-value=2.4e-11 Score=117.66 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=85.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-++..+|++|+++|||+|++..+++.+|+.++++++ + +|+|+||...+ .|| ||.+. |.+|+.+
T Consensus 104 ~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~--g-~PvVvKp~~~~--gg~---------GV~iv~~~~el~~ 169 (431)
T 3mjf_A 104 LEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQK--G-APIVIKADGLA--AGK---------GVIVAMTQEEAET 169 (431)
T ss_dssp HHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHH--C-SSEEEEESSSC--TTC---------SEEEECSHHHHHH
T ss_pred HhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHc--C-CeEEEEECCCC--CCC---------cEEEeCCHHHHHH
Confidence 33578899999999999999999999999999999999 8 89999997433 356 88888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++++... .. |..-..++||||++ +.|+.+.+..|..
T Consensus 170 a~~~~~~~~----~~---g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 207 (431)
T 3mjf_A 170 AVNDMLAGN----AF---GDAGHRIVVEEFLD-GEEASFIVMVDGE 207 (431)
T ss_dssp HHHHHHTTH----HH---HCCCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHHHHhhc----cc---cCCCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence 999887431 01 11125799999999 7999999998875
No 24
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.31 E-value=4.8e-12 Score=120.31 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=120.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
..-+++..|++|+++|||+|++..+++.+|+.++++++ | +|+|+||. .++ .|| ||.+. |++++.
T Consensus 107 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~gg~~g~---------Gv~~v~~~~el~ 172 (377)
T 3orq_A 107 LLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETL--G-YPFIVKTR--FGGYDGK---------GQVLINNEKDLQ 172 (377)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHT--C-SSEEEEES--SSCCTTT---------TEEEECSTTSHH
T ss_pred HhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEeC--CCCCCCC---------CeEEECCHHHHH
Confidence 33568889999999999999999999999999999999 8 89999996 444 467 88888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
++++.+.+ ..++||+|+++..|+.+.+.+|.. |.+..+. . .|.... +......+.
T Consensus 173 ~a~~~~~~---------------~~~ivEe~i~g~~E~sv~~~~~~~--g~~~~~~-~----~e~~~~---~g~~~~~~~ 227 (377)
T 3orq_A 173 EGFKLIET---------------SECVAEKYLNIKKEVSLTVTRGNN--NQITFFP-L----QENEHR---NQILFKTIV 227 (377)
T ss_dssp HHHHHHTT---------------SCEEEEECCCEEEEEEEEEEECGG--GCEEECC-C----EEEEEE---TTEEEEEEE
T ss_pred HHHHhcCC---------------CcEEEEccCCCCEEEEEEEEEeCC--CCEEEEC-C----EeEEEE---CCEEEEEEC
Confidence 88776531 468999999966999999998875 4444442 1 122111 112222223
Q ss_pred CCCCCC-HH----HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeeceeEecCCcEEEEEEEEechhhHH
Q 022648 186 VFNGIT-DE----DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNFYISLVLLICMSLLVGGQVELV 258 (294)
Q Consensus 186 p~~gl~-~~----~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~v~~dg~~valDa~i~~~~~~~ 258 (294)
|.. ++ .. .+.++++.+|+.|... .+++.+ .+..++||||-+.++ | .+.+++.-.+|++.-
T Consensus 228 Pa~-l~~~~~~~~~a~~i~~~lg~~G~~~----------ve~~~~~~g~~~v~EinpR~~~s-g-~~t~~~~~~s~f~~~ 294 (377)
T 3orq_A 228 PAR-IDKTAEAKEQVNKIIQSIHFIGTFT----------VEFFIDSNNQLYVNEIAPRPHNS-G-HYSIEACDYSQFDTH 294 (377)
T ss_dssp SCS-SCCHHHHHHHHHHHHTTSCCCEEEE----------EEEEEETTCCEEEEEEESSCCGG-G-TTHHHHBSSCHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHCCCeEEEE----------EEEEEeCCCcEEEEEeeCCcCCC-C-cEeehhcCCCHHHHH
Confidence 321 22 22 3445556777765311 133443 346789999976543 2 234455555666654
Q ss_pred HHH
Q 022648 259 IHL 261 (294)
Q Consensus 259 ~~~ 261 (294)
.+.
T Consensus 295 ~ra 297 (377)
T 3orq_A 295 ILA 297 (377)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 25
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.31 E-value=1.9e-11 Score=118.20 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=120.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHH----hCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD----AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~----l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~e 102 (294)
..-+++..|++|+++|||+|++..+++.+|+.+++++ + +|+|+||.. .|..|| ||.+. |++
T Consensus 130 ~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~----~P~VvKp~~-~g~~G~---------Gv~~v~~~~ 195 (419)
T 4e4t_A 130 VAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV----LPGILKTAR-LGYDGK---------GQVRVSTAR 195 (419)
T ss_dssp HHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT----CSEEEEESS-SCCTTT---------TEEEECSHH
T ss_pred HhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc----CCEEEEecC-CCCCCC---------ceEEECCHH
Confidence 4467889999999999999999999999999888877 6 699999951 233567 88888 999
Q ss_pred HHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEE
Q 022648 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV 182 (294)
Q Consensus 103 ea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~ 182 (294)
++.++++.+ . + ..++||+|++++.|+.+.+.+|.. |-+..+.. +|.... +.+...
T Consensus 196 el~~a~~~~-~-----------~---~~~lvEe~i~~~~Eisv~v~~~~~--G~~~~~~~-----~e~~~~---~g~~~~ 250 (419)
T 4e4t_A 196 EARDAHAAL-G-----------G---VPCVLEKRLPLKYEVSALIARGAD--GRSAAFPL-----AQNVHH---NGILAL 250 (419)
T ss_dssp HHHHHHHHT-T-----------T---CCEEEEECCCEEEEEEEEEEECTT--SCEEECCC-----EEEEEE---TTEEEE
T ss_pred HHHHHHHhc-C-----------C---CcEEEeecCCCCeEEEEEEEEcCC--CCEEEEeC-----eEEEee---CCeEEE
Confidence 999887764 1 1 469999999988999999999976 44444431 333221 233333
Q ss_pred eecCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEecCCcEEEEEEEEec
Q 022648 183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYISLVLLICMSLLVGG 253 (294)
Q Consensus 183 ~l~p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~dg~~valDa~i~~ 253 (294)
.+.|...++.+ .+.++++.+|+.|..- .++|.+. +..++||||-+..+ | .+..++.-.+
T Consensus 251 ~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~----------vE~~~~~dG~~~v~EiNpR~~~s-g-~~t~~~~~~s 318 (419)
T 4e4t_A 251 TIVPAPAADTARVEEAQQAAVRIADTLGYVGVLC----------VEFFVLEDGSFVANEMAPRPHNS-G-HYTVDACATS 318 (419)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEE----------EEEEEETTCCEEEEEEESSCCGG-G-TTHHHHBSSC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEE----------EEEEEeCCCCEEEEEEeCCCCCC-C-CeEeeccCCC
Confidence 45554445653 2334444555554211 1344443 36779999976533 2 2333433344
Q ss_pred hhhHHHHH
Q 022648 254 QVELVIHL 261 (294)
Q Consensus 254 ~~~~~~~~ 261 (294)
+++.-.+.
T Consensus 319 ~~~~~~ra 326 (419)
T 4e4t_A 319 QFEQQVRA 326 (419)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 26
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.30 E-value=3.7e-12 Score=121.40 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHH--HHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDE--VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eE--a~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
..++...|++|+++|||+|++..+++.++ +....+++ + +|+|+||. .++.++ ||.+. |.+++.
T Consensus 149 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~--~ggss~---------GV~~v~~~~eL~ 214 (373)
T 3lwb_A 149 GMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERL--G-LPVFVKPA--RGGSSI---------GVSRVSSWDQLP 214 (373)
T ss_dssp HHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHH--C-SCEEEEES--BCSTTT---------TCEEECSGGGHH
T ss_pred HcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhc--C-CCEEEEeC--CCCCCC---------CEEEeCCHHHHH
Confidence 35788999999999999999999987764 23447788 8 89999997 444455 78888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++...... ..++||++++ |.|+.+++..|+.
T Consensus 215 ~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~ 247 (373)
T 3lwb_A 215 AAVARARRHD-------------PKVIVEAAIS-GRELECGVLEMPD 247 (373)
T ss_dssp HHHHHHHTTC-------------SSEEEEECCE-EEEEEEEEEECTT
T ss_pred HHHHHHHhcC-------------CCEEEeCCCC-CeEEEEEEEECCC
Confidence 9888765321 4699999999 7999999998875
No 27
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.9e-13 Score=103.53 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
.+++.+|++|+++|||+|++. .+++.+|+.++++++ + +|+|+||. .++.|+ ||.+. |++++.+
T Consensus 7 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--~-~P~vvKp~--~~~~~~---------gv~~v~~~~el~~ 72 (108)
T 2cqy_A 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREI--G-YPVMIKAS--AGGGGK---------GMRIAWDDEETRD 72 (108)
T ss_dssp CCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHH--C-SSEEEEET--TSCCTT---------TCEEESSHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhc--C-CCEEEEEC--CCCCCc---------cEEEeCCHHHHHH
Confidence 456677889999999999998 889999999999999 8 89999997 444455 78888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEE
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv 147 (294)
+++++..+.. .. .+ -..++||+|+++..|+.+++
T Consensus 73 ~~~~~~~~~~--~~---~~--~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 73 GFRLSSQEAA--SS---FG--DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHHHH--HH---TS--SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHHHH--hh---cC--CCcEEEeeccCCCcEEEEEe
Confidence 9988765321 00 01 15799999999767877654
No 28
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.29 E-value=3.7e-11 Score=115.20 Aligned_cols=103 Identities=25% Similarity=0.310 Sum_probs=84.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-+++..|++|+++|||+|++..+++.+|+.++++++ + +|+|+||.. ++.|| ||.+. |++|+.+
T Consensus 103 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~--g-~PvvvKp~~--~~gg~---------Gv~~v~~~~el~~ 168 (412)
T 1vkz_A 103 LEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKF--S-PPYVIKADG--LARGK---------GVLILDSKEETIE 168 (412)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTS--C-SSEEEEESS--CCSSC---------CEEEESSHHHHHH
T ss_pred HhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhc--C-CCEEEEeCC--CCCCC---------CEEEECCHHHHHH
Confidence 44578899999999999999999999999999999999 8 899999973 33456 88888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++++.... . .|. ...++||+|++ +.|+.+.+..|.+
T Consensus 169 a~~~~~~~~~---~---~g~-~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 169 KGSKLIIGEL---I---KGV-KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHHHHTSS---S---TTC-CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHHhhcc---c---cCC-CCeEEEEECCc-CcEEEEEEEECCC
Confidence 9988764310 0 111 12799999999 8999999998865
No 29
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.28 E-value=2.3e-11 Score=114.70 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHH-------HHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVD-------EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~e-------Ea~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~ 101 (294)
.++...|++|+++|||+|++..+++.+ ++.++++++ + +|+|+||. .++.|+ ||.+. +.
T Consensus 128 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~--g-~PvvvKP~--~g~~s~---------Gv~~v~~~ 193 (364)
T 2i87_A 128 MDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKL--N-YPVFVKPA--NLGSSV---------GISKCNNE 193 (364)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHC--C-SSEEEEES--SCSSCT---------TCEEESSH
T ss_pred cCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHHHHhc--C-CCEEEEeC--CCCCCC---------CEEEECCH
Confidence 467888999999999999999998775 566777888 8 89999997 444455 78888 99
Q ss_pred HHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 102 eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++.++.+.+... + ..++||++++ |.|+.+.+..|+.
T Consensus 194 ~el~~a~~~~~~~----------~---~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 194 AELKEGIKEAFQF----------D---RKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp HHHHHHHHHHHTT----------C---SEEEEEECCC-CEEEEEEEEESSS
T ss_pred HHHHHHHHHHHhc----------C---CeEEEEeCcc-CeEEEEEEEcCCC
Confidence 9999888776432 1 5799999999 7899999998864
No 30
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.28 E-value=5.7e-12 Score=118.29 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=78.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea 104 (294)
+..-+++..|++|+++|||+|++..++ .+|+.++++++ + +|+|+||.. ++ .|+ ||.+. |.+++
T Consensus 88 ~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~--~-~P~vvKp~~--~~~~g~---------Gv~~v~~~~el 152 (365)
T 2z04_A 88 YVKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDALKSF--K-LPVVIKAEK--LGYDGK---------GQYRIKKLEDA 152 (365)
T ss_dssp HHHTCHHHHHHHHHTTTCCCCCEEEC------------------CEEEECC-----------------------------
T ss_pred HHhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHHHhc--C-CCEEEEEcC--CCcCCC---------CeEEECCHHHH
Confidence 345688999999999999999999998 88998888888 8 899999973 33 356 78888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.++++++++. ..++||+|++.+.|+.+.+..|+. |.++.++ . .+..... ......+
T Consensus 153 ~~~~~~~~~~--------------~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~-~----~~~~~~~---~~~~~~~ 208 (365)
T 2z04_A 153 NQVVKNHDKE--------------ESFIIEEFVKFEAEISCIGVRDRE--GKTYFYP-Q----PFNKHEE---GILIYNY 208 (365)
T ss_dssp --------------------------CEEEECCCCSEEEEEEEEECTT--CCEEECC-E----EEEEEET---TEEEEEE
T ss_pred HHHHHHhccC--------------CCEEEEccCCCCEEEEEEEEECCC--CCEEEEC-C----EEEEEeC---CEeEEEE
Confidence 8887765421 468999999988999999999875 4444333 1 1211110 0111112
Q ss_pred cCCCCCCH---HHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccC--CCcEEEeeceeEec
Q 022648 185 DVFNGITD---EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEVSMNFYIS 240 (294)
Q Consensus 185 ~p~~gl~~---~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~--d~~~LEINPL~v~~ 240 (294)
.|.. +.. +.+.++++.+|+.|... .+++.+. +..++||||-+..+
T Consensus 209 ~p~~-~~~~~~~~~~~~~~~lg~~G~~~----------vd~~~~~~g~~~~iEiN~R~~~~ 258 (365)
T 2z04_A 209 VPYA-KLKEAEEITKRLMELLDIVGVFT----------VEFFLLKDGRVLINEFAPRVHNT 258 (365)
T ss_dssp EEEE-CCHHHHHHHHHHHHHTTCCEEEE----------EEEEECTTSCEEEEEEESSCCGG
T ss_pred CCHh-HHHHHHHHHHHHHHHcCCEEEEE----------EEEEEeCCCcEEEEEeccCcCCC
Confidence 2210 122 34566666777765311 1234332 36789999977544
No 31
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.28 E-value=6e-11 Score=114.58 Aligned_cols=102 Identities=22% Similarity=0.336 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
-+++..|++|+++|||+|++. .+++.+|+.++++++ + +|+|+||. .++.|| ||.+. |.+++.+
T Consensus 113 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~--~g~gg~---------Gv~~v~~~~el~~ 178 (451)
T 1ulz_A 113 GDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREI--G-YPVLLKAT--AGGGGR---------GIRICRNEEELVK 178 (451)
T ss_dssp HSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHH--C-SSEEEEEC--SSSSCC---------SCEEESSHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEEC--CCCCCc---------cEEEeCCHHHHHH
Confidence 467889999999999999998 789999999999999 8 89999997 344466 88888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++++..... . ..+. ..++||+++++..|+.+.+..|..
T Consensus 179 ~~~~~~~~~~--~---~~~~--~~~lvEe~i~g~~e~~v~v~~~~~ 217 (451)
T 1ulz_A 179 NYEQASREAE--K---AFGR--GDLLLEKFIENPKHIEYQVLGDKH 217 (451)
T ss_dssp HHHHHHHHHH--H---TTSC--CCEEEEECCCSCEEEEEEEEECTT
T ss_pred HHHHHHHHHH--H---hcCC--CeEEEEEcccCCeEEEEEEEEcCC
Confidence 9888764310 0 0111 479999999977899999999874
No 32
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.28 E-value=3.2e-11 Score=129.00 Aligned_cols=162 Identities=16% Similarity=0.220 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+++..|++|+++|||+|++..+++.+|+.++++++ | +|+|+||... +-|+ |+.+. |++|+.+++
T Consensus 127 ~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~i--g-~PvVvKp~~~--~Gg~---------Gv~iv~~~eel~~~~ 192 (1073)
T 1a9x_A 127 EDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADV--G-FPCIIRPSFT--MGGS---------GGGIAYNREEFEEIC 192 (1073)
T ss_dssp HSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHH--C-SSEEEEETTC--CTTT---------TCEEESSHHHHHHHH
T ss_pred hCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHc--C-CCEEEEECCC--CCCC---------ceEEeCCHHHHHHHH
Confidence 478899999999999999999999999999999999 8 8999999732 2255 77777 999999998
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeecc---ccCCCeEEEEeec
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKVPID 185 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~---~~~pd~v~~~~l~ 185 (294)
++.+... ....++||+++++.+|+.+.+.+|+. |.++.+. .+|..+ -++.+. ..+.
T Consensus 193 ~~~~~~~-----------~~~~vlvEe~I~G~~E~~v~v~~d~~--g~~v~~~-----~~e~~dp~~v~~g~s---~~~~ 251 (1073)
T 1a9x_A 193 ARGLDLS-----------PTKELLIDESLIGWKEYEMEVVRDKN--DNCIIVC-----SIENFDAMGIHTGDS---ITVA 251 (1073)
T ss_dssp HHHHHHC-----------TTSCEEEEECCTTSEEEEEEEEECTT--CCEEEEE-----EEEESSCTTSCGGGS---CEEE
T ss_pred HHHHhhC-----------CCCcEEEEEccCCCeEEEEEEEEeCC--CCEEEEE-----EEecccCCccccCcE---EEEe
Confidence 8776431 12579999999977899999999975 3333332 233321 011122 2344
Q ss_pred CCCCCCHH-------HHHHHHHhCCCC-cccHHHHHHHHHHHHHhhcc---CCCcEEEeece
Q 022648 186 VFNGITDE-------DAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEVSMN 236 (294)
Q Consensus 186 p~~gl~~~-------~a~~~~~~lg~~-~~~~~~l~~~l~~L~~l~~~---~d~~~LEINPL 236 (294)
|...++++ .+.++++.+|+. |... .+++.+ .+..++||||=
T Consensus 252 Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~----------vdf~~~~~~g~~~viEiNpR 303 (1073)
T 1a9x_A 252 PAQTLTDKEYQIMRNASMAVLREIGVETGGSN----------VQFAVNPKNGRLIVIEMNPR 303 (1073)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEE----------EEEEECTTTCCEEEEEEESS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCcccCceE----------EEEEEECCCCCEEEEEecCC
Confidence 54446763 344555566766 4311 133333 24567899983
No 33
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.26 E-value=6.5e-11 Score=114.80 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=84.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
..-+++..|++|+++|||+|++. .+++.+|+.++++++ + +|+|+||. .++.|| ||.+. |.+++
T Consensus 117 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~--~g~gg~---------Gv~~v~~~~el 182 (461)
T 2dzd_A 117 MFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAH--G-YPIIIKAA--LGGGGR---------GMRIVRSKSEV 182 (461)
T ss_dssp HTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHH--C-SCEEEEES--TTCSSS---------SEEEECCGGGH
T ss_pred HhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhc--C-CcEEEEeC--CCCCCC---------CEEEeCCHHHH
Confidence 44678899999999999999997 789999999999999 8 89999997 444466 88888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.++++++..... .. .+. ..++||+++++..|+.+.+..|..
T Consensus 183 ~~~~~~~~~~~~--~~---~~~--~~~lvEe~i~g~~e~~v~v~~~~~ 223 (461)
T 2dzd_A 183 KEAFERAKSEAK--AA---FGS--DEVYVEKLIENPKHIEVQILGDYE 223 (461)
T ss_dssp HHHHHHHHHHHH--HH---TSC--CCEEEEECCCSCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHH--hh---cCC--CcEEEEECCCCCeEEEEEEEEcCC
Confidence 999888764311 00 111 579999999977899999999875
No 34
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.26 E-value=8.8e-11 Score=113.43 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
.-+++..|++|+++|||+|++. .+++.+|+.++++++ + +|+|+||. .++.|| ||.+. |.+++.
T Consensus 112 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~--~g~gg~---------Gv~~v~~~~el~ 177 (451)
T 2vpq_A 112 MGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKI--G-YPVIIKAT--AGGGGK---------GIRVARDEKELE 177 (451)
T ss_dssp HHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHH--C-SSEEEEET--TCCTTC---------SEEEESSHHHHH
T ss_pred hcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhc--C-CcEEEEEC--CCCCCC---------CEEEeCCHHHHH
Confidence 3468899999999999999987 889999999999999 8 89999997 344466 88888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEe
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~ 160 (294)
++++++..... .. .+ -..++||+|+++..|+.+.+..|.. |.++.+
T Consensus 178 ~~~~~~~~~~~--~~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~ 223 (451)
T 2vpq_A 178 TGFRMTEQEAQ--TA---FG--NGGLYMEKFIENFRHIEIQIVGDSY--GNVIHL 223 (451)
T ss_dssp HHHHHHHHHHH--HH---HS--CCCEEEEECCCSEEEEEEEEEECTT--SCEEEE
T ss_pred HHHHHHHHHHH--hh---cC--CCcEEEEEecCCCeEEEEEEEEcCC--CCEEEE
Confidence 99888764311 00 01 1579999999966899999999875 444433
No 35
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.22 E-value=1.6e-10 Score=111.91 Aligned_cols=101 Identities=28% Similarity=0.279 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+++..|++|+++|||+|++..+++.+|+.++++++ + +|+|+||.. ++.|| ||.+. |.+++.+++
T Consensus 122 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~PvVvKp~~--~~gg~---------Gv~~v~~~~el~~~~ 187 (451)
T 2yrx_A 122 GSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQK--G-APIVIKADG--LAAGK---------GVTVAQTVEEALAAA 187 (451)
T ss_dssp HCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHH--C-SSEEEEECC------C---------CEEEESSHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhc--C-CcEEEEeCC--CCCCC---------cEEEECCHHHHHHHH
Confidence 478889999999999999999999999999999999 8 899999973 33356 88888 999999998
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++... ..|.....++||||++ +.|+.+.+..|.+
T Consensus 188 ~~~~~~~-------~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 188 KAALVDG-------QFGTAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHHHS-------CCBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHhcc-------ccCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 8876421 0121225799999999 7899999988765
No 36
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.21 E-value=2.1e-10 Score=108.30 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=81.3
Q ss_pred CCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 30 IHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 30 L~E~~ak~lL-~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
-+++..|++| +++|||+|++..+++.+|+.++++++ + +|+|+||. .++.|+ ||.+. |.+++.++
T Consensus 111 ~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~g~gg~---------Gv~~v~~~~el~~~ 176 (391)
T 1kjq_A 111 MNREGIRRLAAEELQLPTSTYRFADSESLFREAVADI--G-YPCIVKPV--MSSSGK---------GQTFIRSAEQLAQA 176 (391)
T ss_dssp HSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHH--C-SSEEEEES--CC---C---------CCEEECSGGGHHHH
T ss_pred hCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhc--C-CCEEEEeC--CCCCCC---------CeEEECCHHHHHHH
Confidence 4678899998 79999999999999999999999999 8 89999997 444466 78888 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++..... + .-..++||+|++.+.|+.+.+..|..
T Consensus 177 ~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 177 WKYAQQGGR--------A-GAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp HHHHHHHSG--------G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred HHHHHhhcc--------c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 888764321 0 11479999999988999999998865
No 37
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.17 E-value=9.3e-11 Score=111.33 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecC-CCCCcccccCCcCcEEEc-C--HHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAG-GRGLGTFKSGLKGGVHIV-K--KEEV 104 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~g-grgK~~~~~sd~GGV~l~-s--~eea 104 (294)
.-++...|++|+++|||+|++..+++.+|+.++++++ | ||+|+||. .+ ..|| |+.+. | .+++
T Consensus 77 ~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~--G-~P~VvKp~--~~G~~Gk---------Gv~~v~~~~~~el 142 (355)
T 3eth_A 77 IADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRL--G-ELAIVKRR--TGGYDGR---------GQWRLRANETEQL 142 (355)
T ss_dssp HHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHH--C-SEEEEEES--SSCCTTT---------TEEEEETTCGGGS
T ss_pred hcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHc--C-CCEEEEec--CCCCCCC---------eEEEEcCCCHHHH
Confidence 3568889999999999999999999999999999999 9 89999996 33 3567 78888 8 8887
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.+++ + + .++||+|++++.|+.+.+.+|.. |-+..+. . +|.... +..+...+
T Consensus 143 ~~a~-------~--------~----~vivEe~I~~~~Eisv~v~~~~~--G~~~~~p-~----~e~~~~---~g~~~~~~ 193 (355)
T 3eth_A 143 PAEC-------Y--------G----ECIVEQGINFSGEVSLVGARGFD--GSTVFYP-L----THNLHQ---DGILRTSV 193 (355)
T ss_dssp CGGG-------T--------T----TEEEEECCCCSEEEEEEEEECTT--SCEEECC-C----EEEEEE---TTEEEEEE
T ss_pred HHHh-------h--------C----CEEEEEccCCCcEEEEEEEEcCC--CCEEEEC-C----EEEEee---CCeEEEEE
Confidence 7631 1 2 48999999989999999999876 3333332 1 222211 12222223
Q ss_pred cCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc-CCCcEEEeeceeEecCCcEEEEEEEEechhh
Q 022648 185 DVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE-SDCTLLEVSMNFYISLVLLICMSLLVGGQVE 256 (294)
Q Consensus 185 ~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~-~d~~~LEINPL~v~~dg~~valDa~i~~~~~ 256 (294)
+|. .++++. |.++++.+|+.|... .++|.+ .+..++||||-+.++. .+..++.-.+|+|
T Consensus 194 ~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~----------vEf~~~~~~~~v~EinpR~~~sg--~~t~~~~~~s~fe 260 (355)
T 3eth_A 194 AFP-QANAQQQARAEEMLSAIMQELGYVGVMA----------MECFVTPQGLLINELAPRVHNSG--HWTQNGASISQFE 260 (355)
T ss_dssp ECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEE----------EEEEEETTEEEEEEEESSCCGGG--TTHHHHSSSCHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEE----------EEEEEECCcEEEEEeeCCCCCCc--cEEeeeecCCHHH
Confidence 332 255433 233344445444211 123333 2456689999765443 3444555556666
Q ss_pred HHHH
Q 022648 257 LVIH 260 (294)
Q Consensus 257 ~~~~ 260 (294)
.-.+
T Consensus 261 ~~~r 264 (355)
T 3eth_A 261 LHLR 264 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 38
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.17 E-value=3.9e-10 Score=108.79 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHH-HHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEV-KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa-~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
.-+++..|++|+++|||+|++. .+++.+|+ .++++++ + +|+|+||. .++.|+ ||.+. |.+++
T Consensus 113 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~--~g~gg~---------Gv~~v~~~~el 178 (449)
T 2w70_A 113 MGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI--G-YPVIIKAS--GGGGGR---------GMRVVRGDAEL 178 (449)
T ss_dssp HHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHH--C-SSEEEEET--TCCTTT---------TCEEECSHHHH
T ss_pred hcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHh--C-CcEEEEEC--CCCCCC---------CEEEeCCHHHH
Confidence 3467889999999999999997 88899999 9999999 8 89999997 334466 78888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.++++++..... .. .+ -..++||++++++.|+.+.+..|..
T Consensus 179 ~~~~~~~~~~~~--~~---~~--~~~~lvEe~i~g~~e~~v~~~~~~~ 219 (449)
T 2w70_A 179 AQSISMTRAEAK--AA---FS--NDMVYMEKYLENPRHVEIQVLADGQ 219 (449)
T ss_dssp HHHHHHHHHHHH--HH---HS--CCCEEEEECCSSCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHH--hh---cC--CCcEEEEeccCCCeEEEEEEEEcCC
Confidence 998887764310 00 01 1479999999977899999999874
No 39
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.17 E-value=8e-10 Score=110.21 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=83.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeee--------------------------CCHHHHHHHHHHhCCCCCeEEEEEeeecC
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAV--------------------------ASVDEVKKAIQDAFPDHKELVVKSQILAG 81 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a--------------------------~s~eEa~~aa~~l~~g~~PvVlKaq~~~g 81 (294)
..-+++.+|++|+++|||+|++..+ ++.+|+.++++++ | +|+|+||. .+
T Consensus 170 ~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~--g-~PvVvKp~--~g 244 (554)
T 1w96_A 170 SLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRI--G-FPVMIKAS--EG 244 (554)
T ss_dssp HSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHH--C-SSEEEEET--TC
T ss_pred HHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHc--C-CCEEEEEC--CC
Confidence 4457889999999999999998764 7899999999999 8 89999997 34
Q ss_pred CCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 82 GRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 82 grgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+.|| ||.+. |++++.++++++.... .+ ..++||++++++.|+.+.+..|..
T Consensus 245 ~gg~---------Gv~~v~~~~el~~a~~~~~~~~--------~~---~~vlvEe~i~g~~e~sv~vl~d~~ 296 (554)
T 1w96_A 245 GGGK---------GIRQVEREEDFIALYHQAANEI--------PG---SPIFIMKLAGRARHLEVQLLADQY 296 (554)
T ss_dssp CTTT---------TEEEECSHHHHHHHHHHHHHHS--------TT---CCEEEEECCCSCEEEEEEEEECTT
T ss_pred CCCc---------eEEEECCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCC
Confidence 4466 88888 9999999988876431 11 479999999978999999999974
No 40
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.16 E-value=5.3e-10 Score=107.40 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=75.2
Q ss_pred CCCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 29 NIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 29 ~L~E~~ak~lL-~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
.-+++..|++| +++|||+|++..+++.+|+.++++++ + +|+|+||. .++.|+ ||.+. |++++.+
T Consensus 118 ~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~g~gg~---------Gv~~v~~~~el~~ 183 (433)
T 2dwc_A 118 AMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKI--G-YPCHTKAI--MSSSGK---------GSYFVKGPEDIPK 183 (433)
T ss_dssp HHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHH--C-SSEEEEEC--CC---------------EEECSGGGHHH
T ss_pred hhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhc--C-CCEEEEEC--CCcCCC---------CeEEECCHHHHHH
Confidence 34678899999 89999999999999999999999999 8 89999997 444466 88888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
+++++..... + .-..++||+|++.+.|+.+.+..|.
T Consensus 184 ~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~ 219 (433)
T 2dwc_A 184 AWEEAKTKAR--------G-SAEKIIVEEHIDFDVEVTELAVRHF 219 (433)
T ss_dssp HHHC------------------CCEEEEECCCCSEEEEECCEEEE
T ss_pred HHHHHHhhcc--------c-CCCCEEEEccCCCCeeEEEEEEecc
Confidence 8877654310 0 1147999999998899999988864
No 41
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.15 E-value=6.1e-11 Score=121.42 Aligned_cols=170 Identities=12% Similarity=0.199 Sum_probs=63.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea 104 (294)
..-++..+|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||. .|+.|| ||++. |++++
T Consensus 112 ~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~i--g-yPvVvKp~--~ggggk---------Gv~iv~~~~el 177 (681)
T 3n6r_A 112 AMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQI--G-YPVMIKAS--AGGGGK---------GMRIAWNDQEA 177 (681)
T ss_dssp HTTSHHHHHHHHHTTTCCCCCC----------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhc--C-CcEEEEEC--CCCCCC---------CEEEECCHHHH
Confidence 34678999999999999999985 778999999999999 8 89999997 455567 88888 99999
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEee
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l 184 (294)
.++++++..... ...| -..++||+|+++.+|+.+.+..|+. |.++.++.. +. .+.+.+. ++ ...
T Consensus 178 ~~a~~~~~~ea~-----~~fg--~~~vlvEe~I~g~rei~V~v~~d~~--G~vv~l~~r---d~-s~qr~~~-k~--~e~ 241 (681)
T 3n6r_A 178 REGFQSSKNEAA-----NSFG--DDRIFIEKFVTQPRHIEIQVLCDSH--GNGIYLGER---EC-SIQRRNQ-KV--VEE 241 (681)
T ss_dssp --------------------------------CCSCEEEEEEEECCSS--SCCEEEEEE---EC-CCEETTE-EC--EEE
T ss_pred HHHHHHHHHHHH-----HhCC--CCcEEEEeccCCCcEEEEEEEEeCC--CCEEEEeee---ec-ceeccCc-cE--EEe
Confidence 998887654321 0011 2579999999977999999999986 455555411 10 1111121 12 334
Q ss_pred cCCCCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHhhcc--CCCcEEEeecee
Q 022648 185 DVFNGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEVSMNF 237 (294)
Q Consensus 185 ~p~~gl~~~~-------a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~--~d~~~LEINPL~ 237 (294)
.|...++++. +.++++.+|+.+... .+++.+ .+..++||||-+
T Consensus 242 ~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~----------vEf~~d~dg~~~~lEiNpR~ 293 (681)
T 3n6r_A 242 APSPFLDEATRRAMGEQAVALAKAVGYASAGT----------VEFIVDGQKNFYFLEMNTRL 293 (681)
T ss_dssp ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEE----------EEEEECTTSCCCCCEEECSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEeCCCCEEEEeccccc
Confidence 4544466643 444455666665311 122333 246778999854
No 42
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.14 E-value=2.2e-11 Score=113.87 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
.++...|++|+++|||+|++..+++.+++.. +++ + +|+|+||. .++.++ ||.+. +.+++.++.
T Consensus 131 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~--~~~--~-~PvvvKP~--~~~~s~---------Gv~~v~~~~el~~a~ 194 (343)
T 1e4e_A 131 MDKSLTYIVAKNAGIATPAFWVINKDDRPVA--ATF--T-YPVFVKPA--RSGSSF---------GVKKVNSADELDYAI 194 (343)
T ss_dssp HSHHHHHHHHHHTTCBCCCEEEECTTCCCCG--GGS--C-SCEEEEES--SCCTTT---------TCEEECSGGGHHHHH
T ss_pred hCHHHHHHHHHHCCCCcCCEEEEechhhhhh--hcc--C-CCEEEEeC--CCCCCC---------CEEEeCCHHHHHHHH
Confidence 5788999999999999999999988776532 667 8 89999997 444455 78888 999999888
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++... + ..++||++++ |.|+.+.+..|+.
T Consensus 195 ~~~~~~----------~---~~~lvEe~I~-G~E~~v~vl~~~~ 224 (343)
T 1e4e_A 195 ESARQY----------D---SKILIEQAVS-GCEVGCAVLGNSA 224 (343)
T ss_dssp HHHTTT----------C---SSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHhc----------C---CcEEEEeCcC-CeEEEEEEEeCCC
Confidence 776432 1 4799999998 7999999998874
No 43
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.12 E-value=1.6e-09 Score=102.76 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=77.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
..-+++..|++|+++|||+|++..+++.+|+.++++++ | +|+|+||. .|+.|+ ||.+. |++++.+
T Consensus 106 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~--~g~gg~---------Gv~~v~~~~el~~ 171 (403)
T 4dim_A 106 MCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENL--K-LPVIVKAT--DLQGSK---------GIYIAKKEEEAID 171 (403)
T ss_dssp HHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTS--C-SSEEEECS--CC--------------CEEESSHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcC--C-CCEEEEEC--CCCCCC---------CEEEECCHHHHHH
Confidence 34578899999999999999999999999999999999 8 89999997 344456 78888 9999999
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
+++++.... . -..++||+|++ +.|+.+.+..+
T Consensus 172 ~~~~~~~~~--------~---~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 172 GFNETMNLT--------K---RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp HHHHHHHHC--------S---SSCCEEEECCC-SEEEEEEEEEE
T ss_pred HHHHHHhcC--------c---CCcEEEEEccC-CcEEEEEEEEE
Confidence 988876442 0 14689999999 68999988764
No 44
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.12 E-value=1.8e-10 Score=104.63 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHH--------HHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKK--------AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~--------aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~- 99 (294)
..+++..+++|+++|||+|++..+++. ++.+ +++++ + +|+|+||. .++.|+ ||.+.
T Consensus 94 ~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~--~-~p~vvKP~--~g~~~~---------gv~~v~ 158 (306)
T 1iow_A 94 SMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLAEISAL--G-LPVIVKPS--REGSSV---------GMSKVV 158 (306)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTT--C-SSEEEEET--TCCTTT---------TCEEES
T ss_pred HcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhhHHhcc--C-CCEEEEeC--CCCCCC---------CEEEeC
Confidence 357889999999999999999999887 7766 67778 7 89999997 444455 78888
Q ss_pred CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEE
Q 022648 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML 149 (294)
Q Consensus 100 s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~ 149 (294)
+.+++.++++++... -..++||++++ +.|+.+.+..
T Consensus 159 ~~~el~~~~~~~~~~-------------~~~~lvee~i~-g~e~~v~~~~ 194 (306)
T 1iow_A 159 AENALQDALRLAFQH-------------DEEVLIEKWLS-GPEFTVAILG 194 (306)
T ss_dssp SGGGHHHHHHHHTTT-------------CSEEEEEECCC-CCEEEEEEET
T ss_pred CHHHHHHHHHHHHhh-------------CCCEEEEeCcC-CEEEEEEEEC
Confidence 999999888776421 15799999999 7899999883
No 45
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.11 E-value=1.9e-10 Score=106.94 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
..++...|++|+++|||+|++..+++.++. +. ++ + +|+|+||. .++.|+ ||.+. +.+++.++
T Consensus 116 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~--~~-~~--g-~PvvvKP~--~g~~s~---------Gv~~v~~~~el~~a 178 (322)
T 2fb9_A 116 CMDKDLSKRVLAQAGVPVVPWVAVRKGEPP--VV-PF--D-PPFFVKPA--NTGSSV---------GISRVERFQDLEAA 178 (322)
T ss_dssp HHCHHHHHHHHHHTTCCCCCEEEEETTSCC--CC-CS--C-SCEEEEET--TCCTTT---------TCEEESSHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCCCCEEEEECchhh--hh-cc--C-CCEEEEeC--CCCCCC---------CEEEECCHHHHHHH
Confidence 356888999999999999999999877642 22 67 7 89999997 444455 77788 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.+..... + ..++||+++++..|+.+++..|+.
T Consensus 179 ~~~~~~~----------~---~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 179 LALAFRY----------D---EKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp HHHHTTT----------C---SEEEEEECCSSCEEEEEEEESSSS
T ss_pred HHHHHhc----------C---CeEEEEeCCCCCeeEEEEEEeCCC
Confidence 8776432 1 579999999943899999998764
No 46
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.11 E-value=1.1e-09 Score=107.44 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=81.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
+..-++...|++|+++|||+|++..+++.+|+.++++++ | +|+|+||. .|+.|+ ||.+. |++|+.
T Consensus 135 ~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~l--g-~PvVVKP~--~g~gg~---------Gv~iv~~~eel~ 200 (474)
T 3vmm_A 135 ENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEI--G-TPLILKPT--YLASSI---------GVTLITDTETAE 200 (474)
T ss_dssp HHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHS--C-SSEEEEES--SCCTTT---------TCEEECCTTSHH
T ss_pred HHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEEC--CCCcCc---------eEEEECCHHHHH
Confidence 455789999999999999999999999999999999999 8 89999997 444456 77777 999999
Q ss_pred HHHHHHhhchhhhhccCCCC--cccceEEEEeecCCCe-----------eEEE-EEEEcCC
Q 022648 106 DLAGKMLGQILVTKQTGPQG--KIVSKVYLCEKLSLVN-----------EMYF-AIMLDRK 152 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g--~~i~~vLVee~v~~~~-----------El~l-gv~~D~~ 152 (294)
++++++..... ..+... ..-..++||+|+++.+ |+.+ ++..|..
T Consensus 201 ~a~~~~~~~~~---~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~ 258 (474)
T 3vmm_A 201 DEFNRVNDYLK---SINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGE 258 (474)
T ss_dssp HHHHHHHHHHT---TSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTE
T ss_pred HHHHHHHHHHh---hccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCe
Confidence 98887754321 000000 1126799999998443 2555 4666765
No 47
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.08 E-value=1.4e-09 Score=116.31 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+++..+++|+++|||+|++..+++.+|+.++++++ | ||+|+||.... .|+ ||.+. |.+++.+++
T Consensus 673 ~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~i--g-~PvvVKP~~~~--gG~---------Gv~iv~~~~el~~~~ 738 (1073)
T 1a9x_A 673 EDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI--G-YPLVVRASYVL--GGR---------AMEIVYDEADLRRYF 738 (1073)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHH--C-SSEEEEC------------------CEEEECSHHHHHHHH
T ss_pred hCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHc--C-CCEEEEECCCC--CCC---------CeEEECCHHHHHHHH
Confidence 467788999999999999999999999999999999 8 89999997433 355 88888 999999988
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++.... .-..++||+|+++..|+.+.+..|+.
T Consensus 739 ~~a~~~~-----------~~~~vlvEefI~g~~E~~V~~l~d~~ 771 (1073)
T 1a9x_A 739 QTAVSVS-----------NDAPVLLDHFLDDAVEVDVDAICDGE 771 (1073)
T ss_dssp HHCC-------------------EEEBCCTTCEEEEEEEEECSS
T ss_pred HHHHhhC-----------CCCcEEEEEccCCCcEEEEEEEEECC
Confidence 8764321 11479999999976799999999875
No 48
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.08 E-value=1.5e-10 Score=118.45 Aligned_cols=108 Identities=16% Similarity=0.278 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~--a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~ 106 (294)
-+++.+|++|+++|||+|++.. +.+.+|+.++++++ | ||+|+||. .|+.|| ||++. |++++.+
T Consensus 140 ~DK~~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~i--g-yPvvvKp~--~G~Gg~---------Gv~iv~~~~el~~ 205 (675)
T 3u9t_A 140 GSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRI--G-YPVLLKAA--AGGGGK---------GMKVVEREAELAE 205 (675)
T ss_dssp TSHHHHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHS--C-SSBCCBCC--C---------------CCCBCCTTTHHH
T ss_pred chHHHHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhC--C-CcEEEEEC--CCCCCc---------cEEEECCHHHHHH
Confidence 5789999999999999999876 78999999999999 8 89999997 555566 88888 9999998
Q ss_pred HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEe
Q 022648 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (294)
Q Consensus 107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~ 160 (294)
+++++..... ...| -..++||+|+++.+|+.+.+..|.. |.++.+
T Consensus 206 a~~~~~~ea~-----~~fg--~~~vlvEeyI~g~reiev~v~~d~~--G~vv~l 250 (675)
T 3u9t_A 206 ALSSAQREAK-----AAFG--DARMLVEKYLLKPRHVEIQVFADRH--GHCLYL 250 (675)
T ss_dssp HHSCCCC---------------CCCBCCBCCSSCBCEEEEEEECSS--SCEEEE
T ss_pred HHHHHHHHHH-----HhcC--CCcEEEEeecCCCcEEEEEEEEcCC--CCEEEE
Confidence 8776543311 0011 2579999999977999999999975 455544
No 49
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.06 E-value=1.5e-10 Score=124.61 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
.-+++.+|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||. .|+.|+ ||++. |++++.
T Consensus 132 ~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~i--g-yPvVVKp~--~g~GG~---------Gv~iv~s~eEL~ 197 (1165)
T 2qf7_A 132 LGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAI--G-YPVMLKAS--WGGGGR---------GMRVIRSEADLA 197 (1165)
T ss_dssp HHSHHHHHHHHHHTTCCBC-------------------------------------------------------------
T ss_pred HCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhc--C-CCEEEEeC--CCCCCC---------CEEEECCHHHHH
Confidence 3578899999999999999998 788999999999999 8 89999997 344466 88888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~ 185 (294)
++++++..... ...+ -..++||+|++++.|+.+.+..|+. |.++.+... .....+.+ .......
T Consensus 198 ~a~~~~~~~a~-----~~fg--~~~vlVEefI~gg~EisV~vl~D~~--G~vv~l~~r----~~s~~r~~---~~~~e~~ 261 (1165)
T 2qf7_A 198 KEVTEAKREAM-----AAFG--KDEVYLEKLVERARHVESQILGDTH--GNVVHLFER----DCSVQRRN---QKVVERA 261 (1165)
T ss_dssp -----------------------------CCCSSEEEEEEEEEECTT--SCEEEEEEE----EEEEEETT---EEEEEEE
T ss_pred HHHHHHHHHHH-----hhcC--CCcEEEEEeccCCcEEEEEEEEcCC--CcEEEEEee----cccceecc---cceEEec
Confidence 98887654311 0011 2579999999988999999999976 444433211 11112111 1223445
Q ss_pred CCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHhhcc-C--CCcEEEeecee
Q 022648 186 VFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE-S--DCTLLEVSMNF 237 (294)
Q Consensus 186 p~~gl~~~-------~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~-~--d~~~LEINPL~ 237 (294)
|...++.+ .+.++++.+|+.+..- .+++.+ . +..++||||-+
T Consensus 262 Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~----------vEf~vd~~dg~~~~iEiNpR~ 313 (1165)
T 2qf7_A 262 PAPYLSEAQRQELAAYSLKIAGATNYIGAGT----------VEYLMDADTGKFYFIEVNPRI 313 (1165)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEEETTTTEEEEEEEECSC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccee----------EEEEEECCCCCEEEEEEEcCC
Confidence 54446653 3445555666655211 123333 2 35678888854
No 50
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.05 E-value=1.4e-09 Score=103.93 Aligned_cols=102 Identities=24% Similarity=0.260 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-+++..|++|+++|||+|++..+++.+|+.++++++ + +|+|+||.. ++.|| ||.+. |++++.++
T Consensus 100 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~P~vvKp~~--~~~g~---------Gv~~v~~~~el~~~ 165 (422)
T 2xcl_A 100 EGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEK--G-APIVIKADG--LAAGK---------GVTVAMTEEEAIAC 165 (422)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHH--C-SSEEEEESS--CGGGT---------CEEEESSHHHHHHH
T ss_pred hcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhc--C-CCEEEEeCC--CCCCC---------cEEEECCHHHHHHH
Confidence 3478899999999999999999999999999999999 8 899999973 33456 88888 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++++... ..|..-..++||+|++ +.|+.+.+..|.+
T Consensus 166 ~~~~~~~~-------~~g~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 166 LHDFLEDE-------KFGDASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp HHHHHTSC-------TTGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHhhh-------hccCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 88876421 0121225799999999 8999999998764
No 51
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.05 E-value=5e-10 Score=106.45 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHH--HHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVD--EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~e--Ea~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
..++...|++|+++|||+|++..+++.+ ++.+ ++++ + +|+|+||. .++.++ ||.+. |.+++.
T Consensus 147 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~l--g-~PvvVKP~--~g~ss~---------Gv~~v~~~~el~ 211 (367)
T 2pvp_A 147 SYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNF--N-FPFIVKPS--NAGSSL---------GVNVVKEEKELI 211 (367)
T ss_dssp HHSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCS--C-SCEEEEES--SCCTTT---------TCEEESSTTSHH
T ss_pred HcCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-Hhcc--C-CCEEEEEC--CCCCCC---------CEEEECCHHHHH
Confidence 3567889999999999999999998876 6766 6778 8 89999997 444455 77777 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCee---EEEEE
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE---MYFAI 147 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~E---l~lgv 147 (294)
++.+..... + ..++||+++++..| +.+++
T Consensus 212 ~a~~~~~~~----------~---~~vlVEe~I~G~~E~svi~v~v 243 (367)
T 2pvp_A 212 YALDSAFEY----------S---KEVLIEPFIQGVKEYNLAGCKI 243 (367)
T ss_dssp HHHHHHTTT----------C---SCEEEEECCTTCEEEEEEEEEE
T ss_pred HHHHHHHhc----------C---CcEEEEeCCCCCceeeEEEEEE
Confidence 888776432 1 47999999994489 44555
No 52
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.04 E-value=2.1e-09 Score=102.85 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+++..|++|+++|||+|++..+++.+|+.++++++ + +|+|+||. .++.|| ||.+. |.+++.+++
T Consensus 101 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~PvvvKp~--~g~gg~---------Gv~~v~~~~el~~~~ 166 (424)
T 2yw2_A 101 GSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKV--G-APIVVKAD--GLAAGK---------GAVVCETVEKAIETL 166 (424)
T ss_dssp HCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHH--C-SSEEEEES--SCCTTC---------SEEEESSHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHc--C-CcEEEEeC--CCCCCC---------CEEEECCHHHHHHHH
Confidence 478899999999999999999999999999999999 8 89999997 334466 88888 999999998
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++.... ..|..-..++||+|++ +.|+.+.+..|.+
T Consensus 167 ~~~~~~~-------~~g~~~~~~lvEe~i~-g~E~sv~~~~~G~ 202 (424)
T 2yw2_A 167 DRFLNKK-------IFGKSSERVVIEEFLE-GEEASYIVMINGD 202 (424)
T ss_dssp HHHHTSC-------TTGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHhhh-------hccCCCCeEEEEECCC-CcEEEEEEEEcCC
Confidence 8876431 0121225799999999 7899999988754
No 53
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.02 E-value=2.3e-09 Score=102.70 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
-+++..|++|+++|||+|++..+++.+|+.+ .++ + ||+|+||. .|+.|| ||.+. |++++.+++
T Consensus 111 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~--g-~P~vvKp~--~g~gs~---------Gv~~v~~~~el~~a~ 174 (425)
T 3vot_A 111 RNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKL--S-YPLVVKPV--NGFSSQ---------GVVRVDDRKELEEAV 174 (425)
T ss_dssp HCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCC--C-SSEEEEES--CC--------------CEEECSHHHHHHHH
T ss_pred hCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhc--C-CcEEEEEC--CCCCCC---------CceEechHHHHHHHH
Confidence 4688999999999999999999999988753 467 8 89999996 444466 88888 999999998
Q ss_pred HHHhhchhhh-hccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 109 GKMLGQILVT-KQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 109 ~~~l~~~~~~-~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
+++....... ... +..-..+++|++++ |.|+.+.+..+.
T Consensus 175 ~~~~~~~~~~~~~~---~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 175 RKVEAVNQRDLNRF---VHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHHHHTTSSHHHH---HTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HHHHhhhhhhhhhh---ccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 8875421000 000 00125799999998 689988776654
No 54
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.01 E-value=2.3e-09 Score=102.40 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-+++..|++|+++|||+|++..+++.+|+.++++++ + +|+|+||. .++.|| ||.+. |.+++.++
T Consensus 99 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~P~vvKp~--~~~gg~---------Gv~~v~~~~el~~~ 164 (417)
T 2ip4_A 99 EGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEV--G-VPVVVKDS--GLAAGK---------GVTVAFDLHQAKQA 164 (417)
T ss_dssp HHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHH--C-SSEEEECT--TSCSST---------TCEEESCHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHc--C-CCEEEEEC--CCCCCC---------CEEEeCCHHHHHHH
Confidence 3478899999999999999999999999999999999 8 89999996 344456 88888 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++.... .+ ..++||+|++ +.|+.+.+..|.+
T Consensus 165 ~~~~~~~~--------~~---~~~lvEe~i~-g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 165 VANILNRA--------EG---GEVVVEEYLE-GEEATVLALTDGE 197 (417)
T ss_dssp HHHHTTSS--------SC---CCEEEEECCC-SCEEEEEEEESSS
T ss_pred HHHHHhhc--------cC---CeEEEEECcc-CcEEEEEEEEeCC
Confidence 88875221 12 5799999999 7899999988754
No 55
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.00 E-value=5.2e-10 Score=115.68 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH-HHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc----CHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa-~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~----s~eea~ 105 (294)
++..+|++|+++|||+|++.++++.+++.+++ +.+ | +|+|+||. .|+.|| ||.+. +.+++.
T Consensus 484 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~--g-~PvVVKP~--~G~~G~---------GV~iv~~~~s~eel~ 549 (750)
T 3ln6_A 484 NKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQ--D-KPIVVKPK--STNFGL---------GISIFKTSANLASYE 549 (750)
T ss_dssp TSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSS--S-SCEEEEET--TCCSSS---------SCEEESSCCCHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhc--C-CcEEEEeC--CCCCCC---------CEEEEeCCCCHHHHH
Confidence 68899999999999999999999999998877 667 7 89999996 566677 77763 789999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCce-----EEEecCCCCceeeeccc
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGP-----IIIGCSKGGTSIEDLAE 173 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gP-----vil~s~~GGv~vE~l~~ 173 (294)
++++.++.. ...++||+|++ |.|+.+.+..|+.. ++ ..+.| .|+..|+.+-+
T Consensus 550 ~a~~~~~~~-------------~~~vlVEefI~-G~E~~v~Vvgg~vv-aa~~r~p~~v~G-dG~~tI~eLI~ 606 (750)
T 3ln6_A 550 KAIDIAFTE-------------DSAILVEEYIE-GTEYRFFVLEGDCI-AVLLRVAANVVG-DGIHTISQLVK 606 (750)
T ss_dssp HHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEETTEEE-EEEEEECCEEEC-CTTCCHHHHHH
T ss_pred HHHHHHHhh-------------CCcEEEEeccC-CCEEEEEEECCEEE-EEEEEecceEec-CCccCHHHHHH
Confidence 998876532 15799999999 79999999876542 22 12344 78887776644
No 56
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.98 E-value=3.4e-09 Score=102.52 Aligned_cols=101 Identities=25% Similarity=0.212 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCe-EEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~P-vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
-+++..|++|+++|||+|++..+++.+|+.++++++ + +| +|+||.. ++.|| ||.+. |.+++.++
T Consensus 127 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvvKp~~--~~gg~---------Gv~~v~~~~el~~~ 192 (452)
T 2qk4_A 127 SSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSA--D-FPALVVKASG--LAAGK---------GVIVAKSKEEACKA 192 (452)
T ss_dssp HBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHC--S-SCEEEEEESB--C---C---------CEEECSSHHHHHHH
T ss_pred cCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhC--C-CCeEEEEeCC--CCCCC---------CEEEeCCHHHHHHH
Confidence 568899999999999999999999999999999999 8 89 9999963 33456 88899 99999999
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++++.... .|..-..++||+|++ +.|+.+.+..|.+
T Consensus 193 ~~~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 229 (452)
T 2qk4_A 193 VQEIMQEKA-------FGAAGETIVIEELLD-GEEVSCLCFTDGK 229 (452)
T ss_dssp HHHHTTC--------------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred HHHHHhhhh-------ccCCCCeEEEEECCC-CCeEEEEEEECCC
Confidence 888764210 111125799999999 8999999988754
No 57
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.98 E-value=1.1e-09 Score=118.57 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHcCCCCCCe-eeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~-~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
-+++.+|++|+++|||+|++ ..+++.+|+.++++++ | ||+|+||. .++.|| ||++. |++|+.++
T Consensus 143 ~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~i--G-yPvVVKP~--~GgGGk---------GV~iv~s~eEL~~a 208 (1236)
T 3va7_A 143 GLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKL--E-YPVMVKST--AGGGGI---------GLQKVDSEDDIERV 208 (1236)
T ss_dssp HSTTHHHHHHHHTTCCCCC-------------------------------------------------------------
T ss_pred cCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHc--C-CCEEEEeC--CCCCCC---------CEEEECCHHHHHHH
Confidence 35788999999999999885 6888999999999999 8 89999997 444467 88888 99999998
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEec
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s 161 (294)
++++..... . ..+ -..++||+|+++..|+.+.+..|.. +.++.++
T Consensus 209 ~~~~~~~a~--~---~~~--~~~vlVEeyI~G~rEisV~vl~Dg~--g~vv~l~ 253 (1236)
T 3va7_A 209 FETVQHQGK--S---YFG--DAGVFMERFVNNARHVEIQMMGDGF--GKAIAIG 253 (1236)
T ss_dssp -------------------------------CCEEEEEEEEEESS--SCEEEEE
T ss_pred HHHHHHHHH--h---ccC--CCcEEEeeccCCCeEEEEEEEecCC--ceEEEEe
Confidence 887654311 0 011 2569999999977999999999986 4555543
No 58
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.96 E-value=4.5e-09 Score=99.09 Aligned_cols=89 Identities=24% Similarity=0.425 Sum_probs=69.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCC-CCCcccccCCcCcEEEc-CHHHHH
Q 022648 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~gg-rgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
..-+++..|++|+++|||+|++..+++.+| +++++ + +|+|+||. .++ .|+ ||.+. |.+++.
T Consensus 97 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~--~-~P~vvKp~--~~~y~g~---------Gv~~v~~~~el~ 159 (380)
T 3ax6_A 97 IIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREF--G-FPVVQKAR--KGGYDGR---------GVFIIKNEKDLE 159 (380)
T ss_dssp HHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTT--C-SSEEEEES--CCC--------------EEEECSGGGGG
T ss_pred HhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhc--C-CCEEEEec--CCCCCCC---------CeEEECCHHHHH
Confidence 345788899999999999999999999887 56778 8 89999997 344 466 88888 887765
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
++++ ..++||++++.+.|+.+.+..|..
T Consensus 160 ~~~~-------------------~~~lvEe~i~~g~e~sv~~~~~~~ 187 (380)
T 3ax6_A 160 NAIK-------------------GETYLEEFVEIEKELAVMVARNEK 187 (380)
T ss_dssp GCCC-------------------SSEEEEECCCEEEEEEEEEEECSS
T ss_pred HHhc-------------------CCEEEEeccCCCeeEEEEEEECCC
Confidence 4211 468999999978999999999865
No 59
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.95 E-value=2.6e-10 Score=122.68 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~--~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
.-+++.+|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||. .|+.|+ |+++. |++++.
T Consensus 116 ~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~i--G-yPvVVKP~--~GgGg~---------Gv~vv~s~eeL~ 181 (1150)
T 3hbl_A 116 FGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEA--G-FPLMIKAT--SGGGGK---------GMRIVREESELE 181 (1150)
T ss_dssp HHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGT--C-SSEEEECC--C----------------CEECCSSSCT
T ss_pred hCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHc--C-CCEEEEeC--CCCCCC---------CEEEECCHHHHH
Confidence 3478999999999999999998 788999999999999 8 89999997 444466 78888 999999
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEe
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~ 160 (294)
++++++..... ...| -..++||+|+++.+|+.+.+..|.. |.++.+
T Consensus 182 ~a~~~a~~~a~-----~~fg--~~~vlVEeyI~G~reieV~vl~d~~--G~vv~l 227 (1150)
T 3hbl_A 182 DAFHRAKSEAE-----KSFG--NSEVYIERYIDNPKHIEVQVIGDEH--GNIVHL 227 (1150)
T ss_dssp HHHHSSSSSCC-------------CBEEECCCSSCEEEEEEEEECSS--SCEEEE
T ss_pred HHHHHHHHHHH-----hhcC--CCcEEEEEccCCCcEEEEEEEEeCC--CCEEEE
Confidence 88877643310 0011 2579999999977999999999985 555544
No 60
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.78 E-value=5e-09 Score=93.46 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
..+++..+++|+++|||+|++..+++.+++.++++++ + +|+|+||. .++.|+ ||.+. +.+++.++
T Consensus 86 ~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~--~-~p~vvKp~--~g~~~~---------gv~~v~~~~el~~~ 151 (280)
T 1uc8_A 86 CGDKWATSVALAKAGLPQPKTALATDREEALRLMEAF--G-YPVVLKPV--IGSWGR---------LLAXXXXXXXXXXX 151 (280)
T ss_dssp HHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--C-SSEEEECS--BCCBCS---------HHHHHHHHHC----
T ss_pred hCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHh--C-CCEEEEEC--CCCCcc---------cceecccccccchh
Confidence 4568889999999999999999999999999999999 8 89999997 333355 77777 88888877
Q ss_pred HHHH--hhchhhhhccCCCCcccceEEEEeecCC-CeeEEEEEEEc
Q 022648 108 AGKM--LGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLD 150 (294)
Q Consensus 108 ~~~~--l~~~~~~~q~~~~g~~i~~vLVee~v~~-~~El~lgv~~D 150 (294)
++++ ++.. .-..++||+++++ +.|+.+.+..+
T Consensus 152 ~~~~~~~~~~-----------~~~~~lvqe~i~~~~~e~~v~v~~~ 186 (280)
T 1uc8_A 152 XXXKEVLGGF-----------QHQLFYIQEYVEKPGRDIRVFVVGE 186 (280)
T ss_dssp --------CT-----------TTTCEEEEECCCCSSCCEEEEEETT
T ss_pred hhhHhhhccc-----------CCCcEEEEeccCCCCceEEEEEECC
Confidence 6654 2110 1257999999996 78888887643
No 61
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.77 E-value=1.4e-08 Score=105.04 Aligned_cols=94 Identities=19% Similarity=0.346 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH-HHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-----CHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-----KKEEV 104 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa-~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-----s~eea 104 (294)
++..+|++|+++|||+|++..+++.+++.+++ +++ | +|+|+||. .|+.|| ||.+. |.+++
T Consensus 489 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~--g-~PvVVKP~--~g~~G~---------GV~iv~~~v~~~eel 554 (757)
T 3ln7_A 489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFE--N-RAVVIKPK--STNYGL---------GITIFQQGVQNREDF 554 (757)
T ss_dssp HSHHHHHHHHHHTCCCCCEEEESCHHHHHHGGGGSS--S-SCEEEEES--SCSTTT---------TCEECSSCCCCHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhc--C-CCEEEEeC--CCCCCC---------CeEEecCCCCCHHHH
Confidence 46788999999999999999999999997776 678 8 89999997 455577 66653 78889
Q ss_pred HHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 105 ~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
.++++.+... + ..++||+|++ |.|+.+.+..|+.
T Consensus 555 ~~al~~a~~~----------~---~~vlVEefI~-G~Ei~v~Vlggkv 588 (757)
T 3ln7_A 555 AKALEIAFRE----------D---KEVMVEDYLV-GTEYRFFVLGDET 588 (757)
T ss_dssp HHHHHHHHHH----------C---SSEEEEECCC-SEEEEEEEETTEE
T ss_pred HHHHHHHHhc----------C---CcEEEEEcCC-CcEEEEEEECCEE
Confidence 8888765432 1 4699999998 6999999876643
No 62
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.60 E-value=1.5e-07 Score=86.54 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH--HHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI--QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa--~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
.-+++..|++|+++|||+|++.. +.+++.++. +++ + +|+|+||.. ++.|+ ||.+. |.+++.
T Consensus 112 ~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~--~-~P~vvKp~~--g~g~~---------gv~~v~~~~el~ 175 (331)
T 2pn1_A 112 CFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEV--Q-LPVFVKPRN--GSASI---------EVRRVETVEEVE 175 (331)
T ss_dssp HHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSS--C-SCEEEEESB--C-------------------------
T ss_pred hhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccC--C-CCEEEEeCC--CCCCC---------CeEEeCCHHHHH
Confidence 35788899999999999999865 567776666 467 7 899999963 33345 78888 888887
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEc
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D 150 (294)
+++++ ...++||++++ +.|+.+.+..|
T Consensus 176 ~~~~~-----------------~~~~lvee~i~-G~e~~v~~~~d 202 (331)
T 2pn1_A 176 QLFSK-----------------NTDLIVQELLV-GQELGVDAYVD 202 (331)
T ss_dssp ------------------------CEEEEECCC-SEEEEEEEEEC
T ss_pred HHHHh-----------------CCCeEEEecCC-CcEEEEEEEEe
Confidence 65432 13689999999 59999999998
No 63
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=98.36 E-value=4.6e-07 Score=84.70 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
.-++...|++|+++|||+|++. .+ | ||+|+||. .++.|+ |+.+. |.+++...
T Consensus 101 ~~dK~~~k~~l~~~gip~~~~~-------------~i--g-~P~vvKp~--~g~g~~---------gv~~v~~~~~~~~~ 153 (363)
T 4ffl_A 101 SRDKKKSKDYFKSIGVPTPQDR-------------PS--K-PPYFVKPP--CESSSV---------GARIIYDDKDLEGL 153 (363)
T ss_dssp HTSHHHHHHHHHHTTCCCCCBS-------------CS--S-SCEEEECS--SCCTTT---------TCEEEC------CC
T ss_pred hhCHHHHHHHHHhcCCCCCCce-------------ec--C-CCEEEEEC--CCCCCc---------CeEEeccHHHhhhh
Confidence 3578899999999999999874 25 7 89999996 444455 77777 76654310
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
...+++|+|++ +.|+.+.+..|..
T Consensus 154 --------------------~~~~~~ee~i~-g~e~sv~~~~d~~ 177 (363)
T 4ffl_A 154 --------------------EPDTLVEEYVE-GEVVSLEVVGDGS 177 (363)
T ss_dssp --------------------CTTCEEEECCC-SEEEEEEEEEESS
T ss_pred --------------------ccchhhhhhcc-CcEEEEEEEEECC
Confidence 14579999998 7899999999976
No 64
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.28 E-value=1.6e-06 Score=82.39 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~ 109 (294)
+....|++|+++|||+|++ +++.+|+ + +|+|+||...+ .|| ||.+. |++|+.++++
T Consensus 124 ~k~~~k~~l~~~GIptp~~--~~~~~e~---------~-~PvVVK~~~~a--~Gk---------Gv~v~~s~ee~~~a~~ 180 (361)
T 2r7k_A 124 ERSLEGKLLREAGLRVPKK--YESPEDI---------D-GTVIVKFPGAR--GGR---------GYFIASSTEEFYKKAE 180 (361)
T ss_dssp CHHHHHHHHHHTTCCCCCE--ESSGGGC---------C-SCEEEECSCCC--C------------EEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCcCCCCE--eCCHHHc---------C-CCEEEeeCCCC--CCC---------CEEEECCHHHHHHHHH
Confidence 3466789999999999975 5666653 5 79999998443 478 89999 9999999998
Q ss_pred HHhhchhhhhccCCCCcc-cceEEEEeecCCCeeEE
Q 022648 110 KMLGQILVTKQTGPQGKI-VSKVYLCEKLSLVNEMY 144 (294)
Q Consensus 110 ~~l~~~~~~~q~~~~g~~-i~~vLVee~v~~~~El~ 144 (294)
+++.... .+.. ...++||||++ +.|+.
T Consensus 181 ~~~~~~~-------~~~~~~~~viIEEfl~-G~e~s 208 (361)
T 2r7k_A 181 DLKKRGI-------LTDEDIANAHIEEYVV-GTNFC 208 (361)
T ss_dssp HHHHTTS-------CCHHHHHHCEEEECCC-SEEEE
T ss_pred HHHhccc-------cccCCCCeEEEEeccc-eEEee
Confidence 8865320 1111 24689999999 78875
No 65
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.25 E-value=3.6e-06 Score=76.90 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
.++...|++|+++|||+|++ +++.++ + + +|+|+||. .++.|+ ||.+. +.+++.+++
T Consensus 99 ~dK~~~~~~l~~~gip~p~~--~~~~~~-------l--~-~P~vvKP~--~g~~s~---------Gv~~v~~~~el~~~~ 155 (334)
T 2r85_A 99 SDRNLERKWLKKAGIRVPEV--YEDPDD-------I--E-KPVIVKPH--GAKGGK---------GYFLAKDPEDFWRKA 155 (334)
T ss_dssp HSHHHHHHHHHHTTCCCCCB--CSCGGG-------C--C-SCEEEEEC--C----T---------TCEEESSHHHHHHHH
T ss_pred HhHHHHHHHHHHcCCCCCCc--cCChHH-------c--C-CCEEEEeC--CCCCCC---------CEEEECCHHHHHHHH
Confidence 46778899999999999998 566543 5 6 89999997 444456 78888 999999888
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+++.... .. .....++|||+++ +.|+.+.+..+..
T Consensus 156 ~~~~~~~-------~~-~~~~~~lvee~i~-G~e~~~~~~~~~~ 190 (334)
T 2r85_A 156 EKFLGIK-------RK-EDLKNIQIQEYVL-GVPVYPHYFYSKV 190 (334)
T ss_dssp HHHHCCC-------SG-GGCCSEEEEECCC-CEEEEEEEEEETT
T ss_pred HHHHhhc-------cc-CCCCcEEEEeccC-CceeEEEEeecCc
Confidence 7765320 00 0114699999999 6888766555543
No 66
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.13 E-value=5.1e-06 Score=76.04 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHH
Q 022648 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (294)
Q Consensus 29 ~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a 107 (294)
..++...+++|+++|||+|++..+++.+++.+++++...+ +|+|+||.. |..|.+ .-|+.+. +.+++.+
T Consensus 96 ~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~~~-~P~vvKP~~--g~g~~~------s~gv~~v~~~~~l~~- 165 (324)
T 1z2n_X 96 MSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQLI-LPFIVKPEN--AQGTFN------AHQMKIVLEQEGIDD- 165 (324)
T ss_dssp HTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTCSC-SSEEEEESB--CSSSSG------GGEEEEECSGGGGTT-
T ss_pred HhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcCCC-CCEEEeeCC--CCCCcc------ceeeEEEeCHHHHhh-
Confidence 4568889999999999999999999999998888763004 799999963 222311 1278777 7665321
Q ss_pred HHHHhhchhhhhccCCCCcccceEEEEeecCC-CeeEEEEEEE
Q 022648 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIML 149 (294)
Q Consensus 108 ~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~-~~El~lgv~~ 149 (294)
. -..+++|+++++ +.|+.+.+..
T Consensus 166 -------~------------~~~~lvqe~i~~~g~~~~v~v~g 189 (324)
T 1z2n_X 166 -------I------------HFPCLCQHYINHNNKIVKVFCIG 189 (324)
T ss_dssp -------C------------CSSEEEEECCCCTTCEEEEEEET
T ss_pred -------c------------CCCEEEEEccCCCCcEEEEEEEC
Confidence 0 146899999985 6788887753
No 67
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.53 E-value=9.9e-05 Score=66.37 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc--CHHHHHHHH
Q 022648 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLA 108 (294)
Q Consensus 31 ~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~--s~eea~~a~ 108 (294)
++...+++|+ |+|++..+++.+++.++++++ + |+|+||. .|+.|+ ||.+. +.+++.++.
T Consensus 124 dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~~--~--p~vvKP~--~g~~g~---------Gv~~v~~~~~~l~~~~ 184 (316)
T 1gsa_A 124 EKLFTAWFSD----LTPETLVTRNKAQLKAFWEKH--S--DIILKPL--DGMGGA---------SIFRVKEGDPNLGVIA 184 (316)
T ss_dssp TTGGGGGGTT----TSCCEEEESCHHHHHHHHHHH--S--SEEEECS--SCCTTT---------TCEEECTTCTTHHHHH
T ss_pred hHHHHHhhhh----cCCCeEEeCCHHHHHHHHHHc--C--CEEEEEC--CCCCcc---------cEEEecCChHHHHHHH
Confidence 3444555555 999999999999999998888 5 9999997 455566 55554 667777665
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCC--CeeEEEEEE
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIM 148 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~--~~El~lgv~ 148 (294)
+.+... + -..+++|+++++ +.|+.+.+.
T Consensus 185 ~~~~~~----------~--~~~~lvqe~i~~~~~~~~~v~~~ 214 (316)
T 1gsa_A 185 ETLTEH----------G--TRYCMAQNYLPAIKDGDKRVLVV 214 (316)
T ss_dssp HHHTTT----------T--TSCEEEEECCGGGGGCEEEEEEE
T ss_pred HHHHhc----------C--CceEEEecccCCCCCCCEEEEEE
Confidence 553211 1 146999999986 678777665
No 68
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=97.46 E-value=0.00021 Score=66.48 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCC---CCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 33 ~~ak~lL~~yGI---pvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
....++|++.|+ |+|+.....+..+ +.+.+ | +|+|+|+- .|..|+ ||.+. |.+++++..
T Consensus 119 ~~~~~~l~~~gi~~~P~~~~~~~~~~~~---~~~~~--g-~PvVvK~~--~Gs~G~---------GV~lv~~~~~~~~~~ 181 (309)
T 1i7n_A 119 AQMVAIFKTLGGEKFPLIEQTYYPNHRE---MLTLP--T-FPVVVKIG--HAHSGM---------GKVKVENHYDFQDIA 181 (309)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSGGG---GSSCC--C-SSEEEEES--SCSTTT---------TEEEECSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCEEeeCChhh---hhhcc--C-CCEEEEeC--CCCcee---------CeEEECCHHHHHHHH
Confidence 455677888898 8666555555544 34556 7 89999985 565677 88888 999888776
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
+.+.... ..+++|||++.+..+.+.+.-+.
T Consensus 182 ~~~~~~~-------------~~~~vQefI~~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 182 SVVALTQ-------------TYATAEPFIDAKYDIRVQKIGNN 211 (309)
T ss_dssp HHHHHHT-------------CCEEEEECCCEEEEEEEEEETTE
T ss_pred HHHhccC-------------CeEEEEeecCCCceEEEEEECCE
Confidence 6543221 45889999998888888887554
No 69
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.30 E-value=0.00026 Score=65.06 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=53.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (294)
Q Consensus 27 ~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~ 105 (294)
+..-+++..|++|++ |||+|++.+ .++ + +|+|+||. .|+.|+ ||.+. +
T Consensus 106 ~~~~dK~~~~~~l~~-Gip~p~~~~-----------~~~--~-~P~vvKP~--~g~gs~---------Gv~~v~~----- 154 (305)
T 3df7_A 106 AVTSDKWELYKKLRG-EVQVPQTSL-----------RPL--D-CKFIIKPR--TACAGE---------GIGFSDE----- 154 (305)
T ss_dssp HHHTSHHHHHHHHTT-TSCCCCEES-----------SCC--S-SSEEEEES--SCC-------------CBCCSS-----
T ss_pred HHhcCHHHHHHHHHh-CCCCCCEec-----------ccC--C-CCEEEEeC--CCCCCC---------CEEEEec-----
Confidence 344678899999999 999999986 246 7 89999996 444455 66665 5
Q ss_pred HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
. + ..++||+|++ +.|+.+.+..+.
T Consensus 155 --------~----------~---~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 155 --------V----------P---DGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp --------C----------C---TTEEEEECCC-SEEEEEEEEESS
T ss_pred --------C----------C---CCEEEEeccC-CcEEEEEEEeCC
Confidence 1 0 4689999999 899999998754
No 70
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.19 E-value=0.0003 Score=66.26 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHc-------CCCCCCeeeeCC--HHHHHHHHH--HhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEE
Q 022648 30 IHEYQGAELMAKY-------GINVPKGLAVAS--VDEVKKAIQ--DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (294)
Q Consensus 30 L~E~~ak~lL~~y-------GIpvp~~~~a~s--~eEa~~aa~--~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l 98 (294)
.+.....++|++. |||+|++.++.+ ++++.+..+ .+ + +|+|+||..-.|+.+ -|+.+
T Consensus 115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~l--g-~P~VvKP~~g~Gs~s---------~~v~~ 182 (346)
T 2q7d_A 115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGL--T-FPFICKTRVAHGTNS---------HEMAI 182 (346)
T ss_dssp TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTC--C-SSEEEECSBCSSTTC---------CEEEE
T ss_pred hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCC--C-CCEEEEecCCCccee---------eeeEE
Confidence 4677777888886 999999999976 355655544 46 6 899999963222222 37888
Q ss_pred c-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCC-CeeEEEEEEEcC
Q 022648 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR 151 (294)
Q Consensus 99 ~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~-~~El~lgv~~D~ 151 (294)
. +.+++... + ..++||||+++ +.|+.+.+.-|.
T Consensus 183 v~~~~~l~~~-----------------~---~~~lvQefI~~~G~dirv~VvG~~ 217 (346)
T 2q7d_A 183 VFNQEGLNAI-----------------Q---PPCVVQNFINHNAVLYKVFVVGES 217 (346)
T ss_dssp ECSGGGTTC----------------------CCEEEEECCCCTTEEEEEEEETTE
T ss_pred ecCHHHHHhc-----------------C---CCEEEEEeeCCCCeEEEEEEECCE
Confidence 8 87665431 0 35899999974 789999887553
No 71
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.18 E-value=6.9e-05 Score=70.03 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHH
Q 022648 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKM 111 (294)
Q Consensus 33 ~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~ 111 (294)
..-|++|+++|||+|+++- ++|+ ++ + +|+++||. .++.|| |+.+. | +|+.++++.+
T Consensus 100 ~~~~~~l~~~Gip~P~~~~---~ee~-----~i--~-~PviVKp~--~g~ggk---------G~~~v~~-eel~~~~~~~ 156 (320)
T 2pbz_A 100 ELQDKALEGAGIPRVEVVE---PEDA-----KP--D-ELYFVRIE--GPRGGS---------GHFIVEG-SELEERLSTL 156 (320)
T ss_dssp HHHHHHHHHHTCCBCCBCC---SCCC-----CS--S-CCEEEECC-----------------------C-EECSCCCC--
T ss_pred HHHHHHHHHCCcCCCCeeC---HhHc-----Cc--C-CcEEEEEC--CCCCCC---------CEEEECh-HHHHHHHHhc
Confidence 4456899999999999872 4443 47 7 89999996 444577 77777 8 8775432221
Q ss_pred hhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCC
Q 022648 112 LGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (294)
Q Consensus 112 l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~ 152 (294)
+ ..++||||++ +.+.+..+..++.
T Consensus 157 -------------~---~~~IiEEfI~-g~~~~~~~f~~~~ 180 (320)
T 2pbz_A 157 -------------E---EPYRVERFIP-GVYLYVHFFYSPI 180 (320)
T ss_dssp ------------------CCEEEECCC-SCEEEEEEEEETT
T ss_pred -------------C---CCEEEEeeec-eEecceeEEeccc
Confidence 1 3589999999 6776644555544
No 72
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=97.17 E-value=0.00056 Score=64.53 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCC---CCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 33 ~~ak~lL~~yGI---pvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
.....+|++.|+ |+++.....+..+ +.+.+ | +|+|+|+- .|..|+ ||.+. |.+++++..
T Consensus 136 ~~~l~~l~~~gi~~~P~~~~t~~~~~~~---~~~~~--g-~PvVvK~~--~Gs~G~---------GV~lve~~~~~~~~~ 198 (344)
T 2p0a_A 136 SQLIKIFHSLGPEKFPLVEQTFFPNHKP---MVTAP--H-FPVVVKLG--HAHAGM---------GKIKVENQLDFQDIT 198 (344)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSSTT---CCCCS--S-SSEEEEES--SCCTTT---------TEEEECSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCEEecCchhh---hhhcc--C-CCEEEEeC--CCCcee---------CeEEECCHHHHHHHH
Confidence 556677888888 8655554555443 34456 7 89999985 555677 88888 998888766
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
+.+... + ..+++|||++.+..+.+.+.-+.
T Consensus 199 ~~~~~~----------~---~~~~vQefI~~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 199 SVVAMA----------K---TYATTEAFIDSKYDIRIQKIGSN 228 (344)
T ss_dssp HHHHHH----------T---CCEEEEECCCEEEEEEEEEETTE
T ss_pred HHHhcc----------C---CeEEEEeccCCCccEEEEEECCE
Confidence 544321 1 35889999998888888877554
No 73
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=97.03 E-value=0.0009 Score=64.74 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCC---CCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 33 ~~ak~lL~~yGI---pvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
.....+|++.|+ |+++.....+..+ +.+.+ | +|+|+|+- .|..|+ ||.+. |.+++++..
T Consensus 231 ~~~l~ll~~~gi~~iP~t~~t~~~~~~~---~i~~~--g-~PvVvKp~--~GS~G~---------GV~lve~~~~l~~ii 293 (422)
T 1pk8_A 231 AQMVRLHKKLGTEEFPLIDQTFYPNHKE---MLSST--T-YPVVVKMG--HAHSGM---------GKVKVDNQHDFQDIA 293 (422)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSGGG---CCCCS--S-SSEEEEES--SCCTTT---------TEEEECSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCceEecCchhh---hhhcc--C-CCEEEEeC--CCCcee---------CeEEeCCHHHHHHHH
Confidence 345677788888 8555544555444 34456 7 89999985 565677 88888 999888777
Q ss_pred HHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcC
Q 022648 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (294)
Q Consensus 109 ~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~ 151 (294)
+.+.... ..+++|||++.+..+.+.+.-++
T Consensus 294 ~~~~~~~-------------~~~~vQEfI~~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 294 SVVALTK-------------TYATAEPFIDAKYDVRVQKIGQN 323 (422)
T ss_dssp HHHHHHT-------------SCEEEEECCCEEEEEEEEEETTE
T ss_pred HHHhccC-------------ceEEEEeecCCCceEEEEEECCE
Confidence 6543221 45899999998888888877554
No 74
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=84.65 E-value=0.19 Score=46.76 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHH------------HHHH-HHHHhCCCCCeEEEEEe
Q 022648 30 IHEYQGAELMAKYGINVPKGLAVASVD------------EVKK-AIQDAFPDHKELVVKSQ 77 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~~~~a~s~e------------Ea~~-aa~~l~~g~~PvVlKaq 77 (294)
-+...+.++|+++|||+|++.++.... ++.+ ..+.+ + +|+|.||.
T Consensus 96 ~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l--~-kPfVeKPv 153 (330)
T 3t7a_A 96 QDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVF--Q-KPFVEKPV 153 (330)
T ss_dssp TBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEE--E-SSEEEEES
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccc--c-CCeeEccc
Confidence 346688999999999999999987521 1111 23456 6 89999995
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=74.31 E-value=6 Score=38.57 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=62.6
Q ss_pred hhhhhhhhcccccccchhhh---hhhcccCCCHHHHHHHHHHc-CCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEee
Q 022648 3 RGLLNKLVSRSLTVAGQWQQ---QQLRRLNIHEYQGAELMAKY-GINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~E~~ak~lL~~y-GIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~ 78 (294)
.||++-.-...++++.-.-+ |-..-+.+-...++-+|.+- =+|..+++.+..+++...+.+.+ ..+|+||..
T Consensus 296 ~gLl~A~r~G~V~i~Na~gsgv~~dKal~a~Lp~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~~l----~~lViKp~~ 371 (474)
T 3n6x_A 296 PGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDNL----AELVVKEVQ 371 (474)
T ss_dssp TTHHHHHHTTSCEEESCTTTHHHHSTTTGGGHHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHSG----GGEEEEECC
T ss_pred HHHHHHHHcCCEEEeCCCchhhhcCcHHHHHhHHHHHHhCCHhhhccCCCceecCCHHHHHHHHhch----hheEEEecC
Confidence 46666666666665533322 21111222223334444432 23344566678888888888887 369999963
Q ss_pred ecCCCCCcccccCCcCcEEEc---CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCC
Q 022648 79 LAGGRGLGTFKSGLKGGVHIV---KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLV 140 (294)
Q Consensus 79 ~~ggrgK~~~~~sd~GGV~l~---s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~ 140 (294)
+..|+ |+.++ +.++..+..+++..+ ..+++.||+++..
T Consensus 372 --g~gg~---------gv~iG~~~s~~e~~~~~~~i~~~-------------p~~yIaQe~v~ls 412 (474)
T 3n6x_A 372 --GSGGY---------GMLVGPAASKQELEDFRQRILAN-------------PANYIAQPTLALS 412 (474)
T ss_dssp --CE--------------EEGGGCCHHHHHHHHHHHHHS-------------GGGEEEEECCCCC
T ss_pred --CCCCC---------ceEECCcCCHHHHHHHHHHHHhC-------------CCCEEEeeccCCc
Confidence 32244 78887 888888877776543 1468899998654
No 76
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=50.49 E-value=46 Score=24.46 Aligned_cols=66 Identities=11% Similarity=-0.057 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCC--CCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHH
Q 022648 32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD--HKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (294)
Q Consensus 32 E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g--~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~ 108 (294)
=..+|++|++.|||.-.-.+-.+++. .+...++..| .-|.|+ . +. |-+..+ ++++++++.
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~d~~~-~~~~~~~~~G~~tVP~I~-----i---~D--------g~~l~~~~~~el~~~L 79 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEHNRAA-AEFVGSVNGGNRTVPTVK-----F---AD--------GSTLTNPSADEVKAKL 79 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTCHHH-HHHHHHHSSSSSCSCEEE-----E---TT--------SCEEESCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEcCCCHHH-HHHHHHHcCCCCEeCEEE-----E---eC--------CEEEeCCCHHHHHHHH
Confidence 34789999999999755545455543 3333333102 136553 1 11 235567 999999888
Q ss_pred HHHhhc
Q 022648 109 GKMLGQ 114 (294)
Q Consensus 109 ~~~l~~ 114 (294)
+++.+-
T Consensus 80 ~el~gL 85 (92)
T 2lqo_A 80 VKIAGL 85 (92)
T ss_dssp HHHHCC
T ss_pred HHhcCC
Confidence 887653
No 77
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=32.47 E-value=21 Score=34.08 Aligned_cols=55 Identities=33% Similarity=0.443 Sum_probs=35.9
Q ss_pred EEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCee
Q 022648 72 LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142 (294)
Q Consensus 72 vVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~E 142 (294)
|+||++ +|.-|- ||..+ |.+|+...-++-.++-- ..+.|..++.|+|||=+. ..|
T Consensus 280 V~VKAD--aGTYGM---------GImtV~s~~ev~~LNrK~RnKM~----~~Keg~~v~~VIIQEGV~-T~E 335 (432)
T 3k1t_A 280 VIVKAD--AGTYGM---------GIMTVKSADDVRDLNRKQRNKMS----VVKEGLKVSEVILQEGVY-TFE 335 (432)
T ss_dssp EEEEEE--CGGGCE---------EEEEESSGGGGSSCCHHHHHHHH----CSSSSSCCCEEEEEECCC-CCE
T ss_pred EEEEcC--CCCCCc---------eEEEecCHHHHHHHhHHhhhhhh----hccCCCccceEEEecCcc-hhh
Confidence 689998 655555 77777 98887653222111110 124688899999999987 345
No 78
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=32.44 E-value=1.5e+02 Score=21.95 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHhCCCCCeEEEEEeeec----CCCCCcccccCCcCcEEEc--CHHHHHHHHHHHhhchh
Q 022648 54 SVDEVKKAIQDAFPDHKELVVKSQILA----GGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQIL 116 (294)
Q Consensus 54 s~eEa~~aa~~l~~g~~PvVlKaq~~~----ggrgK~~~~~sd~GGV~l~--s~eea~~a~~~~l~~~~ 116 (294)
..+++.+...++ |. |.+..+.. +++.+ |=+.+. +++++..|.+.|-++.+
T Consensus 26 ~~~dl~~~f~~~--G~---V~~v~i~~~~~~~~~~~--------G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 26 LEVETKEECEKY--GK---VGKCVIFEIPGAPDDEA--------VRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp CHHHHHHHGGGG--SC---EEEEEEEECSSCCTTTS--------EEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhc--CC---EEEEEEecCCCCCCCCc--------EEEEEEECCHHHHHHHHHHHCCCEE
Confidence 567888888888 62 44544332 12334 223333 99999999998866643
No 79
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=31.59 E-value=52 Score=30.35 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHHHh
Q 022648 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~-~~~a~s~eEa~~aa~~l 65 (294)
-+..+..+.|++.|+|+++ ..++.+.+|+.+..+.+
T Consensus 247 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 283 (328)
T 1zau_A 247 ATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYW 283 (328)
T ss_dssp SBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHHH
Confidence 4688999999999999954 56888899999988876
No 80
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=26.45 E-value=54 Score=30.88 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=27.2
Q ss_pred CeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecC
Q 022648 70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS 138 (294)
Q Consensus 70 ~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~ 138 (294)
.++++||. .+.+|+ |+.+. +.+++.+..+.- + ..++||+++.
T Consensus 148 ~~wI~KP~--~~srG~---------GI~l~~~~~~i~~~~~~~-------------~---~~~VvQkYI~ 190 (380)
T 3tig_A 148 NVWIAKSS--SGAKGE---------GILISSDATELLDFIDNQ-------------G---QVHVIQKYLE 190 (380)
T ss_dssp CCEEEEES--CC-------------CCBCCSCSHHHHHHHHHH-------------T---SCEEEEECCS
T ss_pred CeEEEeCC--ccCCCC---------CEEEeCCHHHHHHHHhcc-------------C---CcEEEEeccc
Confidence 68999997 556787 78888 888887654321 0 3578888884
No 81
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=25.45 E-value=3.4e+02 Score=27.77 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=41.1
Q ss_pred CeEEEEEeeecCCCCCcccccCCcC--cEEEc--CHHHHHHHHHHHhhchhh----h--hccC-CCCcccceEEEEeecC
Q 022648 70 KELVVKSQILAGGRGLGTFKSGLKG--GVHIV--KKEEVEDLAGKMLGQILV----T--KQTG-PQGKIVSKVYLCEKLS 138 (294)
Q Consensus 70 ~PvVlKaq~~~ggrgK~~~~~sd~G--GV~l~--s~eea~~a~~~~l~~~~~----~--~q~~-~~g~~i~~vLVee~v~ 138 (294)
.|++|+....+- +.+ +.|-+| -..++ ..+++.++.++..+...- . ++.+ +....-..|+||+|+.
T Consensus 120 ~~vaVRSSa~~E-Dl~---~~sfAG~~~t~l~v~g~~~l~~Aik~v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~ 195 (794)
T 2ols_A 120 ISVAVRSSATAE-DLP---DASFAGQQETFLNINGLDNVKEAMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVR 195 (794)
T ss_dssp CCEEEEEEECC-----------CCSCSCEEEEECSHHHHHHHHHHHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCC
T ss_pred ceEEEecCCChh-hhh---hhhhhhhhhhhhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHcCCChHHhCceEEEEEccc
Confidence 488999753320 111 012223 24455 688988888887764210 0 0011 1111135799999998
Q ss_pred CCe-eEEEEEEEcCCCCc
Q 022648 139 LVN-EMYFAIMLDRKTAG 155 (294)
Q Consensus 139 ~~~-El~lgv~~D~~~~g 155 (294)
... ===+..++||..+.
T Consensus 196 ~~~s~sGV~FT~dP~tG~ 213 (794)
T 2ols_A 196 SDSGASGVMFTLDTESGY 213 (794)
T ss_dssp TTSSEEEEEESSCTTTCC
T ss_pred CCceeEEEEEeCCCCCCC
Confidence 532 12244557776543
No 82
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=24.76 E-value=73 Score=23.99 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=9.3
Q ss_pred cEEEc-CHHHHHHH
Q 022648 95 GVHIV-KKEEVEDL 107 (294)
Q Consensus 95 GV~l~-s~eea~~a 107 (294)
.+.++ ++++..+.
T Consensus 99 ~~~vGf~~~~~~~~ 112 (114)
T 1rw1_A 99 RTLVGFKPDAYAAA 112 (114)
T ss_dssp CEEESCCHHHHHHH
T ss_pred EEEEeCCHHHHHHH
Confidence 56677 88887654
No 83
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=22.92 E-value=83 Score=28.90 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHHHh
Q 022648 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~-~~~a~s~eEa~~aa~~l 65 (294)
-+.++..+.|++.|+|+++ ..++.+.+|+.+..+.+
T Consensus 236 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 272 (322)
T 3uq8_A 236 TTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDI 272 (322)
T ss_dssp SBHHHHHHHHHHTTCCCCTTCEEEESHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCCcEEeCCHHHHHHHHHHH
Confidence 4688999999999999976 67889999998888765
No 84
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=22.20 E-value=2.3e+02 Score=20.81 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCeEEEEEeeecC---C--CCCcccccCCcCcEEEc--CHHHHHHHHHHHhhchh
Q 022648 56 DEVKKAIQDAFPDHKELVVKSQILAG---G--RGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQIL 116 (294)
Q Consensus 56 eEa~~aa~~l~~g~~PvVlKaq~~~g---g--rgK~~~~~sd~GGV~l~--s~eea~~a~~~~l~~~~ 116 (294)
+++.+.+.++ |. |.+..++.. + +++ |=+.+. +++++..|.+.|-++.+
T Consensus 30 ~dl~~~f~k~--G~---V~~v~i~~~~~~~~~~~~--------G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 30 EDVRDECSKY--GL---VKSIEIPRPVDGVEVPGC--------GKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp HHHHHHHHTT--SC---EEEEECCCCBTTBCCTTT--------TEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcc--CC---EEEEEEeccCCCCCcCCc--------EEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5677777777 62 555554321 1 233 333333 99999999999876653
No 85
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=21.26 E-value=1.1e+02 Score=28.07 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHHHh
Q 022648 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~-~~~a~s~eEa~~aa~~l 65 (294)
-+.++..+.|++.|+|+++ ...+.+.+|+.+..+.+
T Consensus 232 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 268 (318)
T 1b04_A 232 ASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEW 268 (318)
T ss_dssp CBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHH
Confidence 4688999999999999975 56899999998888765
No 86
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=20.58 E-value=1.1e+02 Score=28.13 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHHHh
Q 022648 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (294)
Q Consensus 30 L~E~~ak~lL~~yGIpvp~-~~~a~s~eEa~~aa~~l 65 (294)
-+..+..+.|++.|+|+++ ..++.+.+|+.+..+.+
T Consensus 238 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 274 (332)
T 1ta8_A 238 KTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEY 274 (332)
T ss_dssp SBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHH
Confidence 4688999999999999975 66899999998887765
No 87
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.02 E-value=2.5e+02 Score=20.09 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEcCHHHHHHHHHHHhhc
Q 022648 53 ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQ 114 (294)
Q Consensus 53 ~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~s~eea~~a~~~~l~~ 114 (294)
.+.+++.++..++ | + |....+...++.|| .+=|...+.+++..|.+.+-+.
T Consensus 34 ~t~~~l~~~F~~~--G--~-v~~~~i~~~~~~~g------~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 34 IRTKDIEDVFYKY--G--A-IRDIDLKNRRGGPP------FAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CCHHHHHHHHGGG--S--C-EEEEEECCSSSSSC------CEEEEESCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhc--C--C-eEEEEEEECCCCCc------EEEEEECCHHHHHHHHHHcCCC
Confidence 3678899988888 6 2 33343333333441 1223333999999888776443
Done!