RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022648
(294 letters)
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 117 bits (294), Expect = 2e-32
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ +L A+YG+ P G A + E ++A VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASK--IGAGPWVVKCQVHAGGRGKA- 57
Query: 88 FKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
G + KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 58 -----GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112
Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVA 207
++DR + + + ++GG IE +AE+ P++I KV +D G ++ L +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172
Query: 208 DRNDAIEQVKKLYKLFCESDCTLLEV 233
+ L +F E D L+E+
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEI 198
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 107 bits (267), Expect = 2e-28
Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 3/207 (1%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKR--LNAKEIVLKAQILAGGRGKGV 59
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K E V LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEV 233
+N A +Q+KKLY LF + D T +EV
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEV 206
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase
(CPS), large subunit ATP-binding domains {Escherichia
coli [TaxId: 562]}
Length = 275
Score = 37.3 bits (86), Expect = 0.001
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLG 86
M K G+ + +++E D FP +++ GG G G
Sbjct: 7 VAMKKIGLETARSGIAHTMEEALAVAADVGFP----CIIRPSFTMGGSGGG 53
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase
(CPS), large subunit ATP-binding domains {Escherichia
coli [TaxId: 562]}
Length = 259
Score = 36.5 bits (84), Expect = 0.002
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKS 90
+ + + P V +++ + ++ +P LVV++ + GGR +
Sbjct: 4 HAVERLKLKQPANATVTAIEMAVEKAKEIGYP----LVVRASYVLGGRAMEIVYD 54
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 33.0 bits (74), Expect = 0.023
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQD 64
+AK G+ PK +E + ++
Sbjct: 6 VALAKAGLPQPKTALATDREEALRLMEA 33
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide
synthetase (GAR-syn), domain 2 {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 32.9 bits (74), Expect = 0.030
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGR 83
+ +A++ I + V+ +++ P +V+K+ LA G+
Sbjct: 7 DFLARHKIPTAEYQNFTEVEPALAYLREKGAP----IVIKADGLAAGK 50
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide
synthetase (GAR-syn), domain 2 {Thermotoga maritima
[TaxId: 2336]}
Length = 220
Score = 30.8 bits (68), Expect = 0.15
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVK 75
M KYGI + + +E+++ I+ P V+K
Sbjct: 7 RFMKKYGIRTARFEVAETPEELREKIKKFSPP----YVIK 42
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 29.1 bits (64), Expect = 0.54
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
+ + K GI VP+ D+++ P ++VK GG+G
Sbjct: 7 KWLKKAGIRVPE--VYEDPDDIE------KP----VIVKPHGAKGGKG 42
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId:
1245]}
Length = 228
Score = 28.9 bits (63), Expect = 0.62
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDH-KELVVKSQILAGGR 83
EL+ GI K + V + + + VK+
Sbjct: 7 ELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSV 54
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 29.0 bits (64), Expect = 0.62
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
+L+ + G+ VPK +++ ++VK GGRG
Sbjct: 7 KLLREAGLRVPKKYESP--EDID------GT----VIVKFPGARGGRG 42
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 27.7 bits (61), Expect = 1.5
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 56 DEVKKAIQDAFPDHKELVVKS-QILAGGRGLGTFKSGLKGGVHIV 99
+ +Q FPD K + V + +++ GG G +H +
Sbjct: 324 RLALEQVQTMFPDKKIVGVNTVEVVYGG-----------GNIHXI 357
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus
mutans [TaxId: 1309]}
Length = 369
Score = 27.3 bits (60), Expect = 2.3
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 12/43 (27%)
Query: 56 DEVKKAIQDAFPDHKELVVKSQ-ILAGGRGLGTFKSGLKGGVH 97
K+ +Q+ FPD K + V+++ I GG G +H
Sbjct: 328 QLAKQQVQEMFPDRKVVGVRTEEIAYGG-----------GNIH 359
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 27.0 bits (58), Expect = 2.5
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVK 75
+ GI P + D+ A +P + VK
Sbjct: 7 IVAKNAGIATPAFWVINK-DDRPVAATFTYP----VFVK 40
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 27.0 bits (59), Expect = 2.7
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 56 DEVKKAIQDAFPDHKELVVK-SQILAGGRGLGTFKSGLKGGVH 97
+ +Q FP + + + S ++ G G +H
Sbjct: 306 QQAIDILQQCFPKREVVGIDCSDLIWGL-----------GAIH 337
>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
meningitidis, (serogroup A) [TaxId: 487]}
Length = 371
Score = 26.8 bits (59), Expect = 3.4
Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 20/106 (18%)
Query: 51 AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGK 110
A + +K+ Q + D + + + GG G V+ +
Sbjct: 16 AQQVAEAIKRGFQQSIADVE--CLLCPVGDGGEGT------------------VDAIRHS 55
Query: 111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGP 156
+ + + TG G+ Y ++ + E+ + L +
Sbjct: 56 LDLEEKCLQVTGSFGQKEVMRYFQKEQLALFEVADLVGLGKIPLEK 101
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 26.2 bits (56), Expect = 4.1
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL----VVKSQILAGGR 83
L G+ V +A+ + K + L +VK
Sbjct: 6 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 56
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
{Porphyromonas gingivalis [TaxId: 837]}
Length = 339
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 56 DEVKKAIQDAFPDHKELVVKSQ-ILAGGRGLGTFKSGLKGGVH 97
+Q FPD + + + + ++ G +H
Sbjct: 296 AVALSVMQGLFPDREVIGIDCRPLVKQH-----------GSLH 327
>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH),
middle domain {Streptococcus pyogenes [TaxId: 1314]}
Length = 98
Score = 25.0 bits (54), Expect = 5.8
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 126 KIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSK 163
K+ + YL +++ NE+ + + II G S
Sbjct: 8 KLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISY 45
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 25.4 bits (54), Expect = 9.7
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 168 IEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKL 219
+E L K+ + ++ + E +D +E+VK+
Sbjct: 186 LEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEF 237
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.406
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,051,569
Number of extensions: 48528
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 25
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)