Query 022649
Match_columns 294
No_of_seqs 267 out of 1095
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 3.2E-13 7E-18 97.5 4.6 53 139-191 5-60 (60)
2 smart00353 HLH helix loop heli 99.3 2.6E-12 5.7E-17 91.1 6.6 49 143-191 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 1.5E-12 3.3E-17 93.7 5.1 48 140-187 3-55 (55)
4 KOG1318 Helix loop helix trans 99.1 5E-10 1.1E-14 110.3 10.8 57 135-191 230-290 (411)
5 KOG4304 Transcriptional repres 98.7 6.5E-09 1.4E-13 96.9 2.4 54 139-192 33-94 (250)
6 KOG1319 bHLHZip transcription 98.7 1.8E-08 3.8E-13 90.4 4.2 56 139-194 63-125 (229)
7 KOG3561 Aryl-hydrocarbon recep 98.4 3.3E-07 7.1E-12 96.9 5.2 51 139-189 21-75 (803)
8 KOG2483 Upstream transcription 98.0 1.9E-05 4.1E-10 73.2 7.4 54 138-191 59-115 (232)
9 KOG2588 Predicted DNA-binding 97.9 7.1E-06 1.5E-10 87.6 4.1 61 137-197 275-336 (953)
10 PLN03217 transcription factor 97.7 6E-05 1.3E-09 60.1 4.8 49 148-196 17-71 (93)
11 KOG0561 bHLH transcription fac 97.4 9.5E-05 2.1E-09 70.9 2.7 55 140-194 62-118 (373)
12 KOG3960 Myogenic helix-loop-he 97.3 0.00039 8.4E-09 65.2 6.0 58 141-198 121-180 (284)
13 KOG4029 Transcription factor H 97.2 0.00067 1.5E-08 62.0 5.5 59 139-197 110-172 (228)
14 KOG3910 Helix loop helix trans 95.7 0.074 1.6E-06 54.4 10.0 56 139-194 527-586 (632)
15 KOG4447 Transcription factor T 94.2 0.021 4.7E-07 50.2 1.3 53 139-191 79-133 (173)
16 KOG3560 Aryl-hydrocarbon recep 90.5 0.32 6.9E-06 50.5 4.3 40 145-184 32-75 (712)
17 KOG3559 Transcriptional regula 84.4 1.1 2.5E-05 45.3 4.0 42 145-186 8-53 (598)
18 KOG3898 Transcription factor N 84.0 1.3 2.9E-05 41.6 4.1 47 142-188 76-125 (254)
19 KOG3558 Hypoxia-inducible fact 80.1 1.2 2.7E-05 47.4 2.5 41 145-185 53-97 (768)
20 KOG4395 Transcription factor A 69.2 7 0.00015 37.3 4.3 50 141-190 177-229 (285)
21 KOG3582 Mlx interactors and re 55.3 5.5 0.00012 42.7 1.1 57 138-194 651-712 (856)
22 KOG4447 Transcription factor T 48.8 12 0.00025 33.4 1.9 44 145-188 29-74 (173)
23 TIGR00986 3a0801s05tom22 mitoc 38.7 20 0.00042 31.5 1.7 38 150-187 48-85 (145)
24 PF08285 DPM3: Dolichol-phosph 35.8 26 0.00056 28.2 1.9 23 242-264 68-90 (91)
25 PRK13702 replication protein; 33.0 1.7E+02 0.0036 23.6 6.0 42 140-181 22-76 (85)
26 PF04281 Tom22: Mitochondrial 29.3 34 0.00074 29.6 1.7 40 149-188 49-88 (137)
27 KOG3584 cAMP response element 27.5 40 0.00087 33.0 2.0 16 181-196 312-327 (348)
28 PF02344 Myc-LZ: Myc leucine z 25.2 77 0.0017 21.1 2.4 16 147-162 14-29 (32)
29 COG3074 Uncharacterized protei 24.6 76 0.0017 24.9 2.7 22 176-197 13-34 (79)
30 PF08232 Striatin: Striatin fa 22.7 1.9E+02 0.0042 24.5 5.1 46 150-200 27-72 (134)
31 PTZ00405 cytochrome c; Provisi 22.2 1.4E+02 0.003 24.7 4.0 38 150-187 72-113 (114)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.39 E-value=3.2e-13 Score=97.46 Aligned_cols=53 Identities=36% Similarity=0.650 Sum_probs=49.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
+..|+..||+||++||++|..|+.+||.. .|+||++||+.||+||++|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999998 789999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=2.6e-12 Score=91.09 Aligned_cols=49 Identities=31% Similarity=0.542 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHHHHHHcccCC---CCCcChHhHHHHHHHHHHHHHHHHH
Q 022649 143 SIAERLRRERIAERIRALQELVPS---VNKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 143 ~~~ER~RRerIne~~~~L~~LVP~---~~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
+..||+||++||++|..|+.+||. ..|+||++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999995 5689999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.33 E-value=1.5e-12 Score=93.65 Aligned_cols=48 Identities=40% Similarity=0.680 Sum_probs=45.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHcccCCC-----CCcChHhHHHHHHHHHHHHH
Q 022649 140 DPHSIAERLRRERIAERIRALQELVPSV-----NKTDRAAMLDEIVDYVKFLR 187 (294)
Q Consensus 140 ~~h~~~ER~RRerIne~~~~L~~LVP~~-----~K~DkAsiL~eAI~YIk~Lq 187 (294)
..|+..||+||++||+.|.+|+++||.+ .|+||++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3599999999999999999999999987 68999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.09 E-value=5e-10 Score=110.28 Aligned_cols=57 Identities=32% Similarity=0.584 Sum_probs=51.3
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHHHH
Q 022649 135 RGQATDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 135 r~~~~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
-.++++.|+.+||+||++||++|++|..|||.| .|+.|..||..+++||+.||+..+
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 334568999999999999999999999999998 377899999999999999998666
No 5
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.69 E-value=6.5e-09 Score=96.89 Aligned_cols=54 Identities=24% Similarity=0.432 Sum_probs=47.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC--------CCcChHhHHHHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV--------NKTDRAAMLDEIVDYVKFLRLQVKV 192 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--------~K~DkAsiL~eAI~YIk~Lq~qv~~ 192 (294)
+..|-++||+||.|||++|.+|+.||+.+ .|++||.||+.||+|+|.||.+.+.
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34688999999999999999999999964 5788999999999999999876543
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.67 E-value=1.8e-08 Score=90.37 Aligned_cols=56 Identities=34% Similarity=0.550 Sum_probs=49.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC-------CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV-------NKTDRAAMLDEIVDYVKFLRLQVKVLS 194 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~-------~K~DkAsiL~eAI~YIk~Lq~qv~~L~ 194 (294)
+..|.-+||+||+.|+..+..|+.|||.| .|+.||.||..+|+||.+|+.++..-+
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe 125 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE 125 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999977 388899999999999999988765544
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.38 E-value=3.3e-07 Score=96.92 Aligned_cols=51 Identities=29% Similarity=0.499 Sum_probs=48.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQ 189 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~q 189 (294)
+..|+.+||+||+++|..|.+|.+|||.+ .|+||.+||.+||++||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999987 5999999999999999999875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.98 E-value=1.9e-05 Score=73.18 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=46.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHcccCCCC--CcC-hHhHHHHHHHHHHHHHHHHH
Q 022649 138 ATDPHSIAERLRRERIAERIRALQELVPSVN--KTD-RAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 138 ~~~~h~~~ER~RRerIne~~~~L~~LVP~~~--K~D-kAsiL~eAI~YIk~Lq~qv~ 191 (294)
.+..|+..||+||..|+++|..|+.+||... |.. +++||+.|+.||+.|+.+..
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 4668999999999999999999999999872 333 69999999999999987543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.93 E-value=7.1e-06 Score=87.62 Aligned_cols=61 Identities=28% Similarity=0.483 Sum_probs=55.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHcccc
Q 022649 137 QATDPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMSR 197 (294)
Q Consensus 137 ~~~~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~ 197 (294)
.++..||++||+-|-.|||+|.+|+.+||+. .|+.|..+|..||+||++|+...+.|....
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 5588999999999999999999999999987 699999999999999999998877776543
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.69 E-value=6e-05 Score=60.05 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHcccCCC------CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649 148 LRRERIAERIRALQELVPSV------NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 196 (294)
Q Consensus 148 ~RRerIne~~~~L~~LVP~~------~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~ 196 (294)
---+.|+|.+..||+|+|.. .|...+-||+||+.||+.||.+|..|+..
T Consensus 17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33589999999999999974 45677889999999999999999999964
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.39 E-value=9.5e-05 Score=70.86 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=47.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649 140 DPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLS 194 (294)
Q Consensus 140 ~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~ 194 (294)
+--+..||+|=.-||..|..||.|+|.. .|+.||.||+.+.+||.+|..+.-+|=
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445679999999999999999999975 799999999999999999987655443
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.34 E-value=0.00039 Score=65.21 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=48.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHc-ccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHccccC
Q 022649 141 PHSIAERLRRERIAERIRALQE-LVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV 198 (294)
Q Consensus 141 ~h~~~ER~RRerIne~~~~L~~-LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~~ 198 (294)
.-.+.||+|=.|+||.|.+|++ -.++- .++-|..||..||+||..||.-++++...+-
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3456799999999999999985 34444 5799999999999999999999999886443
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.16 E-value=0.00067 Score=62.03 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=50.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHHHHHHcccc
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQVKVLSMSR 197 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~ 197 (294)
+..++..||.|=+.+|..|..||.+||.. .|+.|..+|-.||.||++|+..++.-+..+
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 34567779999999999999999999854 579999999999999999998887766543
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.71 E-value=0.074 Score=54.41 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=45.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCCCCc----ChHhHHHHHHHHHHHHHHHHHHHc
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSVNKT----DRAAMLDEIVDYVKFLRLQVKVLS 194 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~~K~----DkAsiL~eAI~YIk~Lq~qv~~L~ 194 (294)
+...+..||.|=+-|||.|++|.++.----|. .|.-||..||.-|-.|++||.+--
T Consensus 527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 34567778888889999999999887544343 478899999999999999998744
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.21 E-value=0.021 Score=50.22 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=46.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
+--|++-||+|-..+|+.|..||.++|.. .|..|.--|.-|..||-||-.-.+
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 34699999999999999999999999965 789999999999999999975443
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.50 E-value=0.32 Score=50.51 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHH
Q 022649 145 AERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVK 184 (294)
Q Consensus 145 ~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk 184 (294)
--|+-|+|+|..+..|..|+|-- .|+||.|||.-+|.|++
T Consensus 32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 35677999999999999999953 79999999999999986
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.41 E-value=1.1 Score=45.25 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHH
Q 022649 145 AERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFL 186 (294)
Q Consensus 145 ~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~L 186 (294)
+.|.||++-|-.|.+|..|+|-. ...||++|+.-|..|||.-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 57899999999999999999964 5699999999999999864
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=84.04 E-value=1.3 Score=41.60 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=40.6
Q ss_pred cchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHH
Q 022649 142 HSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRL 188 (294)
Q Consensus 142 h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~ 188 (294)
=+..||.|--.+|+-|..||++||.+ .|+.|...|.-|-.||..|++
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 35568888899999999999999954 688999999999999998874
No 19
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=80.06 E-value=1.2 Score=47.35 Aligned_cols=41 Identities=27% Similarity=0.510 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHH
Q 022649 145 AERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKF 185 (294)
Q Consensus 145 ~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~ 185 (294)
+.|.||-|-|+-|-+|..++|-- ..+|||+|+.-||-|+|.
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 57999999999999999999942 469999999999999974
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=69.23 E-value=7 Score=37.30 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=43.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHH
Q 022649 141 PHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQV 190 (294)
Q Consensus 141 ~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv 190 (294)
.-+..||+|=.-+|..|..|+..||.. .|+.|-.-|..|-.||-.|-..+
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 345678888899999999999999976 57889999999999999986554
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=55.34 E-value=5.5 Score=42.75 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=47.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHcccCCC-----CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649 138 ATDPHSIAERLRRERIAERIRALQELVPSV-----NKTDRAAMLDEIVDYVKFLRLQVKVLS 194 (294)
Q Consensus 138 ~~~~h~~~ER~RRerIne~~~~L~~LVP~~-----~K~DkAsiL~eAI~YIk~Lq~qv~~L~ 194 (294)
....|+.+|.+||..|+-++..|-.++.+. .|+.++.-+..++.||.-++.+...+.
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 456799999999999999999999999875 477788889999999987776554443
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=48.83 E-value=12 Score=33.43 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHH
Q 022649 145 AERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRL 188 (294)
Q Consensus 145 ~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~ 188 (294)
.|+.|..++++.++-|+.|+|+. +++.+---|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 58999999999999999999976 222222225555666666544
No 23
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=38.72 E-value=20 Score=31.50 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcccCCCCCcChHhHHHHHHHHHHHHH
Q 022649 150 RERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLR 187 (294)
Q Consensus 150 RerIne~~~~L~~LVP~~~K~DkAsiL~eAI~YIk~Lq 187 (294)
-|-|-|||.+|+.+||+..+.-..+...-+..++|.+=
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~ 85 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTL 85 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999888777888888888888763
No 24
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=35.78 E-value=26 Score=28.25 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.2
Q ss_pred HHHHHHHhhhHHHhhhccCCcce
Q 022649 242 QVAKLMEENVGAAMQFLQSKALC 264 (294)
Q Consensus 242 ~~aklle~~~~~a~q~L~srGLC 264 (294)
+.++-+++++.+|+.|||+||+-
T Consensus 68 eA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 68 EAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45666788999999999999974
No 25
>PRK13702 replication protein; Provisional
Probab=33.05 E-value=1.7e+02 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCcchhHHHHH--HHHHHHHHHHHcccCCC-----------CCcChHhHHHHHHH
Q 022649 140 DPHSIAERLRR--ERIAERIRALQELVPSV-----------NKTDRAAMLDEIVD 181 (294)
Q Consensus 140 ~~h~~~ER~RR--erIne~~~~L~~LVP~~-----------~K~DkAsiL~eAI~ 181 (294)
.+++.+||+|. .|..+--++|+-+|++. ..+..|.+|+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67899999984 45556667888888864 23556777777765
No 26
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=29.26 E-value=34 Score=29.64 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcccCCCCCcChHhHHHHHHHHHHHHHH
Q 022649 149 RRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRL 188 (294)
Q Consensus 149 RRerIne~~~~L~~LVP~~~K~DkAsiL~eAI~YIk~Lq~ 188 (294)
.-|-|-+||-+|+.+||+..+.-..+.+.-+..++|.+=.
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~ 88 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFS 88 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998776777777788887776643
No 27
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=27.46 E-value=40 Score=32.99 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHccc
Q 022649 181 DYVKFLRLQVKVLSMS 196 (294)
Q Consensus 181 ~YIk~Lq~qv~~L~~~ 196 (294)
+|||.|+.+|.+||..
T Consensus 312 EYVKCLENRVAVLENQ 327 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQ 327 (348)
T ss_pred HHHHHHHhHHHHHhcc
Confidence 7999999999999964
No 28
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.24 E-value=77 Score=21.08 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHc
Q 022649 147 RLRRERIAERIRALQE 162 (294)
Q Consensus 147 R~RRerIne~~~~L~~ 162 (294)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788999999888874
No 29
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.56 E-value=76 Score=24.88 Aligned_cols=22 Identities=14% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHcccc
Q 022649 176 LDEIVDYVKFLRLQVKVLSMSR 197 (294)
Q Consensus 176 L~eAI~YIk~Lq~qv~~L~~~~ 197 (294)
+..||+-|.-||..|.+|+..+
T Consensus 13 iqqAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999864
No 30
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.67 E-value=1.9e+02 Score=24.53 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcccCCCCCcChHhHHHHHHHHHHHHHHHHHHHccccCCC
Q 022649 150 RERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGA 200 (294)
Q Consensus 150 RerIne~~~~L~~LVP~~~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~~~~ 200 (294)
|..|..+|..|+. ..-.--.+-.+-+.|||.|+..++.....+...
T Consensus 27 RaEmkarIa~LEG-----E~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 27 RAEMKARIAFLEG-----ERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6778888888884 222334566777999999999999888776553
No 31
>PTZ00405 cytochrome c; Provisional
Probab=22.25 E-value=1.4e+02 Score=24.69 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHH
Q 022649 150 RERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLR 187 (294)
Q Consensus 150 RerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq 187 (294)
.+.|...|..=+.++|+. ....++.-+...|.||+.|+
T Consensus 72 ~~~L~~~l~~P~~~~pgt~M~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 72 PEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred HHHHHHHHHCHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 466777788888889843 33446677888999999885
Done!