Query 022649
Match_columns 294
No_of_seqs 267 out of 1095
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:52:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.6 1.4E-15 4.9E-20 125.4 6.9 67 130-196 19-89 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 2E-15 6.7E-20 117.1 6.2 57 140-196 8-65 (82)
3 1a0a_A BHLH, protein (phosphat 99.5 9.9E-16 3.4E-20 113.7 1.8 53 139-191 3-62 (63)
4 4h10_B Circadian locomoter out 99.5 1.1E-14 3.6E-19 110.7 6.7 57 139-195 9-66 (71)
5 1an4_A Protein (upstream stimu 99.5 2.6E-15 9E-20 111.1 2.4 53 138-190 5-63 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 3.9E-15 1.3E-19 113.6 -0.2 49 139-187 10-62 (73)
7 1nkp_B MAX protein, MYC proto- 99.4 2.1E-13 7.1E-18 105.4 5.9 57 140-196 4-62 (83)
8 1hlo_A Protein (transcription 99.4 2E-13 6.7E-18 105.1 5.7 58 139-196 13-72 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 5.4E-13 1.9E-17 104.8 5.8 56 140-195 8-66 (88)
10 3u5v_A Protein MAX, transcript 99.4 5.8E-13 2E-17 102.2 5.3 57 139-195 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.2E-11 3.9E-16 95.7 6.5 57 140-196 3-62 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 6.2E-11 2.1E-15 89.2 1.7 52 139-190 13-66 (68)
13 4f3l_A Mclock, circadian locom 99.0 3.6E-10 1.2E-14 106.4 6.4 53 138-190 12-65 (361)
14 2ql2_B Neurod1, neurogenic dif 98.9 9.2E-10 3.2E-14 80.8 5.4 51 141-191 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1E-09 3.5E-14 104.6 2.3 51 139-189 14-68 (387)
16 4ath_A MITF, microphthalmia-as 98.6 7.8E-08 2.7E-12 74.9 5.9 46 150-195 4-53 (83)
17 2lfh_A DNA-binding protein inh 98.5 3.9E-08 1.3E-12 74.0 3.6 45 144-188 20-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.2E-05 4.1E-10 64.3 6.7 49 146-194 33-84 (97)
19 3fx7_A Putative uncharacterize 54.0 18 0.00061 28.4 4.7 24 176-199 65-88 (94)
20 2wt7_A Proto-oncogene protein 40.8 43 0.0015 23.7 4.7 37 146-195 1-37 (63)
21 3muj_A Transcription factor CO 39.5 39 0.0013 28.2 4.9 35 152-186 95-133 (138)
22 1xkm_B Distinctin chain B; por 32.9 56 0.0019 19.5 3.4 20 173-192 3-22 (26)
23 1f1f_A Cytochrome C6; heme, pr 29.0 78 0.0027 22.0 4.5 39 150-189 48-87 (89)
24 1a7t_A Metallo-beta-lactamase; 23.2 49 0.0017 27.7 2.9 31 161-191 200-230 (232)
25 1m2x_A Class B carbapenemase B 22.8 20 0.00068 29.9 0.3 31 162-192 191-221 (223)
26 1gdv_A Cytochrome C6; RED ALGA 21.4 1.3E+02 0.0046 20.4 4.5 36 152-188 46-82 (85)
27 1p3q_Q VPS9P, vacuolar protein 20.7 76 0.0026 22.3 2.9 25 144-168 3-27 (54)
28 2fhx_A SPM-1; metallo-beta-lac 20.3 47 0.0016 27.8 2.2 30 162-191 216-245 (246)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.59 E-value=1.4e-15 Score=125.43 Aligned_cols=67 Identities=31% Similarity=0.488 Sum_probs=51.7
Q ss_pred cccccCCCCCCCcchhHHHHHHHHHHHHHHHHcccCCCC----CcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649 130 RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVN----KTDRAAMLDEIVDYVKFLRLQVKVLSMS 196 (294)
Q Consensus 130 ~~r~~r~~~~~~h~~~ER~RRerIne~~~~L~~LVP~~~----K~DkAsiL~eAI~YIk~Lq~qv~~L~~~ 196 (294)
+...++...+.+|+.+||+||++||++|.+|+.|||++. |++|++||.+||+||++||.+++.|+..
T Consensus 19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555567789999999999999999999999999873 7889999999999999999999999853
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.57 E-value=2e-15 Score=117.14 Aligned_cols=57 Identities=28% Similarity=0.505 Sum_probs=54.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649 140 DPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 196 (294)
Q Consensus 140 ~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~ 196 (294)
..|+.+||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+..
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999998 89999999999999999999999999864
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.54 E-value=9.9e-16 Score=113.65 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=48.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC-------CCcChHhHHHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV-------NKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~-------~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
+.+|+++||+||++||++|..|+.|||.+ .|.+||+||+.||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999965 466799999999999999998763
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=110.73 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=53.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSM 195 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~ 195 (294)
+.+|+.+||+||++||++|.+|+.|||.. .|+||++||+.||+||++||.++.-|+-
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 35799999999999999999999999975 6999999999999999999999988874
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=2.6e-15 Score=111.12 Aligned_cols=53 Identities=26% Similarity=0.478 Sum_probs=49.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHcccCCCC------CcChHhHHHHHHHHHHHHHHHH
Q 022649 138 ATDPHSIAERLRRERIAERIRALQELVPSVN------KTDRAAMLDEIVDYVKFLRLQV 190 (294)
Q Consensus 138 ~~~~h~~~ER~RRerIne~~~~L~~LVP~~~------K~DkAsiL~eAI~YIk~Lq~qv 190 (294)
.+..|+.+||+||++||++|.+|+.|||.+. |+||++||.+||+||++||.++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999875 7899999999999999999865
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=3.9e-15 Score=113.56 Aligned_cols=49 Identities=35% Similarity=0.514 Sum_probs=46.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLR 187 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq 187 (294)
+..|+.+||+||++||++|.+|+.|||.+ .|+|||+||+.||+|||.|+
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~ 62 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999976 69999999999999999996
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=2.1e-13 Score=105.40 Aligned_cols=57 Identities=30% Similarity=0.581 Sum_probs=53.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649 140 DPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 196 (294)
Q Consensus 140 ~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~ 196 (294)
..|+..||+||++||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e 62 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999975 79999999999999999999999998853
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2e-13 Score=105.06 Aligned_cols=58 Identities=29% Similarity=0.570 Sum_probs=54.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 196 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~ 196 (294)
+..|+..||+||.+||++|..|+.+||.+ .|++|++||..||+||++|+.+++.|+..
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999986 69999999999999999999999999864
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=5.4e-13 Score=104.80 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=52.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649 140 DPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLSM 195 (294)
Q Consensus 140 ~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~~ 195 (294)
..|+..||+||+.||++|..|+.+||.. .|++|++||..||+||++|+.+.+.|..
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999975 5999999999999999999999998875
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.35 E-value=5.8e-13 Score=102.22 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=50.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCC---CCCc-ChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPS---VNKT-DRAAMLDEIVDYVKFLRLQVKVLSM 195 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~---~~K~-DkAsiL~eAI~YIk~Lq~qv~~L~~ 195 (294)
+..|+..||+||+.||++|.+|+.+||. ..|. .|..||..||+||++|++++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999995 3555 7899999999999999999999986
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.23 E-value=1.2e-11 Score=95.73 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=52.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649 140 DPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 196 (294)
Q Consensus 140 ~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~ 196 (294)
..|+..||+||..|+++|..|+.+||.. .|++|++||..|++||+.|+.+.+.|...
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999965 68899999999999999999999988864
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.01 E-value=6.2e-11 Score=89.17 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=47.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQV 190 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv 190 (294)
+..|+..||+|+..||+.|..|+.+||.. .|++|..||..||+||.+|++.+
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999965 68999999999999999999765
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=3.6e-10 Score=106.44 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=43.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHcccC-CCCCcChHhHHHHHHHHHHHHHHHH
Q 022649 138 ATDPHSIAERLRRERIAERIRALQELVP-SVNKTDRAAMLDEIVDYVKFLRLQV 190 (294)
Q Consensus 138 ~~~~h~~~ER~RRerIne~~~~L~~LVP-~~~K~DkAsiL~eAI~YIk~Lq~qv 190 (294)
.+.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..-
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 4568999999999999999999999999 5579999999999999999998654
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.94 E-value=9.2e-10 Score=80.79 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=46.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHH
Q 022649 141 PHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 141 ~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
.|+..||+|+..||+.|..|+.+||.. .|++|..+|..||+||++|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999975 589999999999999999998763
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=1e-09 Score=104.62 Aligned_cols=51 Identities=33% Similarity=0.439 Sum_probs=47.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHcccC----CCCCcChHhHHHHHHHHHHHHHHH
Q 022649 139 TDPHSIAERLRRERIAERIRALQELVP----SVNKTDRAAMLDEIVDYVKFLRLQ 189 (294)
Q Consensus 139 ~~~h~~~ER~RRerIne~~~~L~~LVP----~~~K~DkAsiL~eAI~YIk~Lq~q 189 (294)
+.+|+.+||+||+|||+.|.+|+.||| ...|+||++||..||.|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999 458999999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.57 E-value=7.8e-08 Score=74.91 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649 150 RERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQVKVLSM 195 (294)
Q Consensus 150 RerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~qv~~L~~ 195 (294)
|..||++|.+|..|||.+ .|.+|++||..||+||++||..++.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999975 4799999999999999999998887764
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.55 E-value=3.9e-08 Score=73.96 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHH
Q 022649 144 IAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRL 188 (294)
Q Consensus 144 ~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~ 188 (294)
..||+|...||+.|..||++||.. .|++|..+|..||+||+.||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 448889999999999999999976 689999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.00 E-value=1.2e-05 Score=64.29 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649 146 ERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLS 194 (294)
Q Consensus 146 ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~ 194 (294)
||.|=..||+.|..||.+||.. .|+.|..+|..||+||++|+..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5677788999999999999965 589999999999999999998876544
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=53.96 E-value=18 Score=28.43 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHccccCC
Q 022649 176 LDEIVDYVKFLRLQVKVLSMSRVG 199 (294)
Q Consensus 176 L~eAI~YIk~Lq~qv~~L~~~~~~ 199 (294)
.+.|=+||.+|+++|++|+..|+.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHH
Confidence 457778999999999999987753
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.78 E-value=43 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649 146 ERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSM 195 (294)
Q Consensus 146 ER~RRerIne~~~~L~~LVP~~~K~DkAsiL~eAI~YIk~Lq~qv~~L~~ 195 (294)
||++|.+...++.+-+. =..-.+|+..|+.+|+.|+.
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~ 37 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLED 37 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777764 12334666677777776665
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=39.52 E-value=39 Score=28.23 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHH
Q 022649 152 RIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFL 186 (294)
Q Consensus 152 rIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~L 186 (294)
.|.=.|..|+++||.. .++-|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4778999999999964 5788999999999998876
No 22
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.88 E-value=56 Score=19.46 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 022649 173 AAMLDEIVDYVKFLRLQVKV 192 (294)
Q Consensus 173 AsiL~eAI~YIk~Lq~qv~~ 192 (294)
.+-|-+|-.|+.+|++.++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35677899999999988765
No 23
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=29.03 E-value=78 Score=22.00 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcccCCCCC-cChHhHHHHHHHHHHHHHHH
Q 022649 150 RERIAERIRALQELVPSVNK-TDRAAMLDEIVDYVKFLRLQ 189 (294)
Q Consensus 150 RerIne~~~~L~~LVP~~~K-~DkAsiL~eAI~YIk~Lq~q 189 (294)
++.|.+.+..-...+|...+ ++... +...+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44555555554567888754 55444 57889999988653
No 24
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=23.21 E-value=49 Score=27.69 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=23.2
Q ss_pred HcccCCCCCcChHhHHHHHHHHHHHHHHHHH
Q 022649 161 QELVPSVNKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 161 ~~LVP~~~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
..++|.-+..-...+++.+++||+.|+++++
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 4566766544345789999999999998774
No 25
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=22.85 E-value=20 Score=29.93 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=21.6
Q ss_pred cccCCCCCcChHhHHHHHHHHHHHHHHHHHH
Q 022649 162 ELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 192 (294)
Q Consensus 162 ~LVP~~~K~DkAsiL~eAI~YIk~Lq~qv~~ 192 (294)
.++|+-+..-....|..+++|++.++++|++
T Consensus 191 ~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 4556544322467899999999999998864
No 26
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=21.37 E-value=1.3e+02 Score=20.41 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcccCCCC-CcChHhHHHHHHHHHHHHHH
Q 022649 152 RIAERIRALQELVPSVN-KTDRAAMLDEIVDYVKFLRL 188 (294)
Q Consensus 152 rIne~~~~L~~LVP~~~-K~DkAsiL~eAI~YIk~Lq~ 188 (294)
.|.+.++.-...+|... .++... +...+.||+.|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDED-IEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHHHHHhh
Confidence 33344433335788875 454444 5789999999864
No 27
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.68 E-value=76 Score=22.34 Aligned_cols=25 Identities=12% Similarity=0.489 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHcccCCCC
Q 022649 144 IAERLRRERIAERIRALQELVPSVN 168 (294)
Q Consensus 144 ~~ER~RRerIne~~~~L~~LVP~~~ 168 (294)
.++|.+|...++-+..|+.+.|...
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4688889999999999999999764
No 28
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.34 E-value=47 Score=27.81 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=23.0
Q ss_pred cccCCCCCcChHhHHHHHHHHHHHHHHHHH
Q 022649 162 ELVPSVNKTDRAAMLDEIVDYVKFLRLQVK 191 (294)
Q Consensus 162 ~LVP~~~K~DkAsiL~eAI~YIk~Lq~qv~ 191 (294)
.++|+-+..-....|.++++||+.|+++|+
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 456665543346889999999999999885
Done!