Query 022650
Match_columns 294
No_of_seqs 118 out of 560
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2667 COPII vesicle protein 100.0 1.1E-75 2.3E-80 549.4 23.8 289 1-293 58-378 (379)
2 PF07970 COPIIcoated_ERV: Endo 100.0 4.1E-58 9E-63 409.9 18.6 197 78-274 11-222 (222)
3 PF13850 ERGIC_N: Endoplasmic 99.4 1E-13 2.2E-18 108.2 5.1 44 1-44 53-96 (96)
4 PF10399 UCR_Fe-S_N: Ubiquitin 51.0 4.3 9.3E-05 26.6 -0.3 30 247-276 9-38 (41)
5 PF04971 Lysis_S: Lysis protei 39.5 13 0.00028 27.1 0.6 27 260-286 36-63 (68)
6 PF12421 DUF3672: Fibronectin 36.8 27 0.00058 28.8 2.2 23 112-134 30-52 (136)
7 COG3765 WzzB Chain length dete 28.9 42 0.00091 32.1 2.3 37 234-272 299-335 (347)
8 PF01034 Syndecan: Syndecan do 28.5 20 0.00043 25.8 0.1 9 283-291 35-43 (64)
9 KOG3111 D-ribulose-5-phosphate 27.4 31 0.00067 30.5 1.1 15 21-35 28-42 (224)
10 PF07413 Herpes_UL37_2: Betahe 26.3 64 0.0014 30.0 3.0 41 244-284 229-272 (276)
11 KOG2014 SMT3/SUMO-activating c 23.4 52 0.0011 31.0 1.8 24 258-290 286-309 (331)
12 PF10661 EssA: WXG100 protein 22.8 40 0.00086 28.2 0.9 13 258-270 128-140 (145)
13 PF13038 DUF3899: Domain of un 21.2 70 0.0015 24.1 1.9 30 254-283 5-37 (92)
No 1
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-75 Score=549.42 Aligned_cols=289 Identities=39% Similarity=0.657 Sum_probs=226.2
Q ss_pred CeecCCCCCeeeEEEEEEeCccCCCeeeeeeEecCCCeeeeccCceEEEeecCCCceecccc-----------cchhhhh
Q 022650 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY-----------LTDLVEK 69 (294)
Q Consensus 1 l~VD~~~~~~l~In~DItfp~~PC~~l~lDv~D~~G~~~~~~~~~i~k~rld~~g~~i~~~~-----------~~~~~~~ 69 (294)
++||.+++++|+||||||||+|||++|+|||+|.+|+++++++++|+|.|+|+ +++.... .......
T Consensus 58 ~~vd~s~~e~l~in~DItfp~lpC~~lsVDv~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k~~~p~~~~~ 135 (379)
T KOG2667|consen 58 LFVDDSRDEKLQINFDITFPALPCSILSVDVMDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHKQTIPTTDPI 135 (379)
T ss_pred EEEeCCCCceeeeeeeEEeccCccceEEEEeeccccccccchhhhhhhcccCc--cccccchhhhcccccccccCCCCcc
Confidence 57999999999999999999999999999999999999999999999999998 3332100 0000001
Q ss_pred hcccc-cCC------CC--CCchhhH---HhhhcccCCCChhHHHHH---HhhhhccCCCceEEEEEEEEEeeeeEEEEE
Q 022650 70 EHEEH-KHD------HN--KDHKDDI---DEKLHAFGFDEDAENMIK---KVKHALESGEGCRVYGVLDVQRVAGNFHIS 134 (294)
Q Consensus 70 ~~~~~-~~~------~~--~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~egCri~G~l~VnkV~GnfhI~ 134 (294)
.|..+ +.+ .. ..|+++. +.++|++......+++.. ..+.+...+|||||+|++.||||||||||+
T Consensus 136 ~c~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia 215 (379)
T KOG2667|consen 136 LCGLCYGAEDFNDGDIDCCNLCEDVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIA 215 (379)
T ss_pred chhhhhhhhccccccchhhhcchHHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEc
Confidence 11111 111 11 2233332 234454443222222211 112233579999999999999999999999
Q ss_pred EcCCc----ccceeehhcCCcccceeEEEEEeeeCCCCCCCCCCCCCceeeecCCceeeEEEEEEEEEEEEecCcceeee
Q 022650 135 VHGLN----IYVAQMIFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEYRYISKDVLPT 210 (294)
Q Consensus 135 ~~~~~----~~~~~~~~~~~~~~N~sH~I~~lsFG~~~~g~~nPLdg~~~~~~~~~~~~~Y~lkvVPT~y~~~~~~~~~t 210 (294)
++... .+.++... ...+||||+|||||||+.+|+..|||||+...+.+...+|+||+|||||.|.+..+.++.|
T Consensus 216 ~g~~~~~~~~h~hd~~~--~~~~n~SH~InhLSFG~~~p~~~nPLdG~~~~~~~~~~~~~Yf~KvVPT~y~~~~~~~~~T 293 (379)
T KOG2667|consen 216 PGKSSQHSNAHVHDLSL--LDNLNFSHRINHLSFGEYIPGIVNPLDGTNFIANEHLTTFQYFLKVVPTVYKYKSGRVIDT 293 (379)
T ss_pred cCCCccccccccchhhh--cccCCceEEEeeeccCCCCcccccCCCCccccccCCccceeeEEEEcceEEEeecCceecc
Confidence 75321 11221110 1469999999999999999999999999988888999999999999999999989999999
Q ss_pred eceEEEEEEEeecC-CCC-CcceEEEEEEccceEEEEEeeeccHHHHHHHHhhhhcceeehhhhhHHHHHHHHHHHcCcc
Q 022650 211 NQFSVTEYFSTINE-FDR-TWPAVYFLYDLSPITVTIKEERRSFLHLITRLCAVLGGTFALTGMLDRWMYRLLEALTKPS 288 (294)
Q Consensus 211 ~qySvt~~~~~~~~-~~~-~~PgI~F~Yd~sPi~v~~~~~r~~~~~fl~~lcaIiGGvftv~~~id~~~~~~~~~~~k~~ 288 (294)
||||||+|.+.... ..+ ++|||||+||+|||+|+++|+|+||+||||+|||||||||||||+||+++|++.+.++++.
T Consensus 294 ~QysVt~~~~~~~~~~~~~~~PGifF~YelSPl~V~v~E~r~sf~~Flt~lCAIiGGvftvagiid~~~~~~~~~i~~k~ 373 (379)
T KOG2667|consen 294 NQYSVTEYEYVLHSHRAKSGIPGIFFKYELSPLMVKVTEERQSFSHFLTRLCAIIGGVFTVAGILDSLLYHILELIKGKI 373 (379)
T ss_pred eeeeeeeeEEeccccccccCCCeEEEEEecCceEEEEEeccccHHHHHHHHHHHhcceeehHHHHHHHHHHHHHHHhcch
Confidence 99999999988873 333 7999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCcC
Q 022650 289 ARSVL 293 (294)
Q Consensus 289 ~~~~~ 293 (294)
+.+|+
T Consensus 374 ~~gk~ 378 (379)
T KOG2667|consen 374 ALGKY 378 (379)
T ss_pred hhhcc
Confidence 88775
No 2
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=100.00 E-value=4.1e-58 Score=409.90 Aligned_cols=197 Identities=39% Similarity=0.668 Sum_probs=162.6
Q ss_pred CCCCchhhHH---hhhcccCCCChhHHHHHHh----hhhccCCCceEEEEEEEEEeeeeEEEEEEcCCc----ccceeeh
Q 022650 78 HNKDHKDDID---EKLHAFGFDEDAENMIKKV----KHALESGEGCRVYGVLDVQRVAGNFHISVHGLN----IYVAQMI 146 (294)
Q Consensus 78 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~egCri~G~l~VnkV~GnfhI~~~~~~----~~~~~~~ 146 (294)
++++|+|+.. .++|++...+.+|||.++. +.....+|||||+|++.||||+|||||+++... .+.+...
T Consensus 11 CCnTC~~V~~ay~~~~w~~~~~~~~eQC~~~~~~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~hd~~ 90 (222)
T PF07970_consen 11 CCNTCEDVREAYRKKGWAFPDLENIEQCRREYVKKIKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSFQQDGGHIHDLS 90 (222)
T ss_pred cCcCHHHHHHHHHHhCCCCCCccccccccchhhhhhhhhccCCCCCEEEEEEEEEEEEEEEEEEecchhccCCcceeehh
Confidence 3445677653 3556554445667766542 334456899999999999999999999997632 1222222
Q ss_pred hcCCc-ccceeEEEEEeeeCCCCCCCCCCCCCcee--eecCCceeeEEEEEEEEEEEEecCcceeeeeceEEEEEEEeec
Q 022650 147 FGGAK-NVNVSHVIHDLSFGPKYPGIHNPLDGTVR--MLHDTSGTFKYYIKIVPTEYRYISKDVLPTNQFSVTEYFSTIN 223 (294)
Q Consensus 147 ~~~~~-~~N~sH~I~~lsFG~~~~g~~nPLdg~~~--~~~~~~~~~~Y~lkvVPT~y~~~~~~~~~t~qySvt~~~~~~~ 223 (294)
..... .+|+||+|||||||+++|+..|||||+.+ ..+....+|+||||||||+|..+++..++|||||||++.+.+.
T Consensus 91 ~~~~~~~~N~SH~I~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~~~YflkvVPT~y~~~~~~~~~t~qYsvt~~~~~~~ 170 (222)
T PF07970_consen 91 PFDDEPKFNFSHTINHLSFGEEIPGIVNPLDGTQKIVQTDNGNYMYQYFLKVVPTTYEDLDGFSIETYQYSVTEHSRPLN 170 (222)
T ss_pred hhccccCCCCCeEEEEEEeccccccccccccCccccccCCCCceeEEEEEEEeeeeeEeccccccccccccceeeeeecc
Confidence 22222 79999999999999999999999999988 4577889999999999999999888767999999999999988
Q ss_pred CCC-CCcceEEEEEEccceEEEEEeeeccHHHHHHHHhhhhcceeehhhhhH
Q 022650 224 EFD-RTWPAVYFLYDLSPITVTIKEERRSFLHLITRLCAVLGGTFALTGMLD 274 (294)
Q Consensus 224 ~~~-~~~PgI~F~Yd~sPi~v~~~~~r~~~~~fl~~lcaIiGGvftv~~~id 274 (294)
... .++|||||+||||||+|+++++|+||+||||+||||||||||++||||
T Consensus 171 ~~~~~~~PGI~F~Yd~SPi~v~~~~~r~s~~~flt~lcaIiGGvftv~gliD 222 (222)
T PF07970_consen 171 GGSSGGLPGIFFKYDFSPIMVVITEDRKSFLHFLTRLCAIIGGVFTVAGLID 222 (222)
T ss_pred CCCCCCCceEEEEEeceeEEEEEEEecCCHHHHHHHHHHHhchHheEEEecC
Confidence 764 679999999999999999999999999999999999999999999998
No 3
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=99.44 E-value=1e-13 Score=108.24 Aligned_cols=44 Identities=48% Similarity=0.881 Sum_probs=42.0
Q ss_pred CeecCCCCCeeeEEEEEEeCccCCCeeeeeeEecCCCeeeeccC
Q 022650 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDT 44 (294)
Q Consensus 1 l~VD~~~~~~l~In~DItfp~~PC~~l~lDv~D~~G~~~~~~~~ 44 (294)
|.||.+++++|+||||||||+|||++|++|++|++|++++|++|
T Consensus 53 ~~VD~~~~~~l~in~ditf~~~pC~~l~vDv~D~~G~~~~dv~h 96 (96)
T PF13850_consen 53 LVVDTSRDEKLQINFDITFPHMPCDFLSVDVQDASGDHQLDVTH 96 (96)
T ss_pred EEEcCCCCceEEEEEEEEECCCccCeeeeEeEccCCCeeccccC
Confidence 57999999999999999999999999999999999999999875
No 4
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=51.04 E-value=4.3 Score=26.57 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=24.6
Q ss_pred eeeccHHHHHHHHhhhhcceeehhhhhHHH
Q 022650 247 EERRSFLHLITRLCAVLGGTFALTGMLDRW 276 (294)
Q Consensus 247 ~~r~~~~~fl~~lcaIiGGvftv~~~id~~ 276 (294)
.+|+.|+...+...|-+|++.++.-+++++
T Consensus 9 ~~RRdFL~~at~~~gavG~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 9 PTRRDFLTIATSAVGAVGAAAAAWPFVSSM 38 (41)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457889999999999999998888877764
No 5
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=39.54 E-value=13 Score=27.06 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=19.9
Q ss_pred hhhhccee-ehhhhhHHHHHHHHHHHcC
Q 022650 260 CAVLGGTF-ALTGMLDRWMYRLLEALTK 286 (294)
Q Consensus 260 caIiGGvf-tv~~~id~~~~~~~~~~~k 286 (294)
.+|+||++ ++++++-.+.|+..+-=++
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 47888876 8889998999876544333
No 6
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=36.82 E-value=27 Score=28.84 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCCceEEEEEEEEEeeeeEEEEE
Q 022650 112 SGEGCRVYGVLDVQRVAGNFHIS 134 (294)
Q Consensus 112 ~~egCri~G~l~VnkV~GnfhI~ 134 (294)
..|.|.+.|++..+|+-|.+--+
T Consensus 30 ~~~~~~~~Gtv~A~~i~GDiv~~ 52 (136)
T PF12421_consen 30 IAESCTFKGTVYANKIIGDIVKA 52 (136)
T ss_pred EcccceEEeEEEehhEecceeEE
Confidence 48899999999999999997654
No 7
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=28.89 E-value=42 Score=32.10 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred EEEEccceEEEEEeeeccHHHHHHHHhhhhcceeehhhh
Q 022650 234 FLYDLSPITVTIKEERRSFLHLITRLCAVLGGTFALTGM 272 (294)
Q Consensus 234 F~Yd~sPi~v~~~~~r~~~~~fl~~lcaIiGGvftv~~~ 272 (294)
|+|+-+|-.=.-. ..|=-.+++-+.|+|||++.++..
T Consensus 299 yRYl~~P~~Pvkr--d~PrrA~ilil~~LiGgm~g~g~v 335 (347)
T COG3765 299 YRYLQKPTLPVKR--DSPRRAIILILGALIGGMLGAGVV 335 (347)
T ss_pred EEecCCCCCCCcC--CCcchHHHHHHHHHHHHHHHHHHH
Confidence 6777777654433 346678899999999999988763
No 8
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.51 E-value=20 Score=25.81 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=0.6
Q ss_pred HHcCccccC
Q 022650 283 ALTKPSARS 291 (294)
Q Consensus 283 ~~~k~~~~~ 291 (294)
.++|+++++
T Consensus 35 R~rkkdEGS 43 (64)
T PF01034_consen 35 RMRKKDEGS 43 (64)
T ss_dssp --S------
T ss_pred HHHhcCCCC
Confidence 356666653
No 9
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=27.37 E-value=31 Score=30.50 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.1
Q ss_pred ccCCCeeeeeeEecC
Q 022650 21 ALPCDVLSVDAIDMS 35 (294)
Q Consensus 21 ~~PC~~l~lDv~D~~ 35 (294)
+.-|++||+||||-.
T Consensus 28 ~~GadwlHlDVMDg~ 42 (224)
T KOG3111|consen 28 DAGADWLHLDVMDGH 42 (224)
T ss_pred HcCCCeEEEeeeccc
Confidence 346899999999953
No 10
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=26.32 E-value=64 Score=29.98 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=28.8
Q ss_pred EEEeeeccHHHH---HHHHhhhhcceeehhhhhHHHHHHHHHHH
Q 022650 244 TIKEERRSFLHL---ITRLCAVLGGTFALTGMLDRWMYRLLEAL 284 (294)
Q Consensus 244 ~~~~~r~~~~~f---l~~lcaIiGGvftv~~~id~~~~~~~~~~ 284 (294)
.+..+.+.+.+. ++++|+++||.|++.+|+=-++.+..+.+
T Consensus 229 ~~~~~~~~l~~~~~~~~g~~~v~~G~~~lL~LFc~l~~~~Rr~i 272 (276)
T PF07413_consen 229 ILRVDYRALGHWLAALIGMFFVASGAFMLLSLFCCLSIWRRRDI 272 (276)
T ss_pred EEecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444556555 88999999999999987766665554444
No 11
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=23.37 E-value=52 Score=31.05 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=15.7
Q ss_pred HHhhhhcceeehhhhhHHHHHHHHHHHcCcccc
Q 022650 258 RLCAVLGGTFALTGMLDRWMYRLLEALTKPSAR 290 (294)
Q Consensus 258 ~lcaIiGGvftv~~~id~~~~~~~~~~~k~~~~ 290 (294)
=+|||||||.+ ..+.+++.|+..+
T Consensus 286 Pv~AvVGGiva---------QevIk~isk~~~P 309 (331)
T KOG2014|consen 286 PVCAVVGGILA---------QEVIKAISKKGPP 309 (331)
T ss_pred chhhhhhhHhH---------HHHHHHhhcCCCc
Confidence 37999999853 4455666665443
No 12
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=22.78 E-value=40 Score=28.22 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=6.8
Q ss_pred HHhhhhcceeehh
Q 022650 258 RLCAVLGGTFALT 270 (294)
Q Consensus 258 ~lcaIiGGvftv~ 270 (294)
-|++|.||+|+++
T Consensus 128 ~ll~i~~giy~~~ 140 (145)
T PF10661_consen 128 ILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 13
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=21.16 E-value=70 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=19.3
Q ss_pred HHHHHHhhhhcceeehh---hhhHHHHHHHHHH
Q 022650 254 HLITRLCAVLGGTFALT---GMLDRWMYRLLEA 283 (294)
Q Consensus 254 ~fl~~lcaIiGGvftv~---~~id~~~~~~~~~ 283 (294)
-|+++++-++.|.+... |+.|.+.|...+.
T Consensus 5 ~Fl~~l~lliig~~~~v~~~GfFd~~~ygfrr~ 37 (92)
T PF13038_consen 5 LFLVGLILLIIGGFLFVFQSGFFDGFSYGFRRL 37 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 36666666655554443 8999998865443
Done!