Query 022650
Match_columns 294
No_of_seqs 118 out of 560
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 28.2 18 0.00062 23.1 0.8 16 260-275 15-30 (44)
2 2l2t_A Receptor tyrosine-prote 23.0 24 0.00083 22.5 0.7 16 260-275 14-29 (44)
3 1brv_A Protein G, BRSV-G regio 17.1 33 0.0011 20.2 0.3 9 18-26 10-18 (32)
4 2ccv_A Helix pomatia agglutini 11.5 79 0.0027 23.5 1.1 31 8-38 30-60 (101)
5 3cx5_I Cytochrome B-C1 complex 10.6 1.5E+02 0.005 20.4 2.2 29 259-287 17-45 (65)
6 2knc_B Integrin beta-3; transm 9.7 45 0.0015 23.9 -0.8 26 259-285 14-39 (79)
7 3arc_X Photosystem II PSBX pro 9.2 1.9E+02 0.0065 17.8 2.0 26 250-278 4-29 (39)
8 1pp9_J Ubiquinol-cytochrome C 7.1 2.9E+02 0.01 18.6 2.5 30 258-287 20-49 (62)
9 3dsh_A IRF-5, interferon regul 6.6 2.5E+02 0.0085 24.3 2.4 29 160-200 164-192 (246)
10 3lti_A DNA-directed RNA polyme 6.6 1.5E+02 0.005 26.6 0.9 28 230-257 33-64 (296)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.21 E-value=18 Score=23.05 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=10.7
Q ss_pred hhhhcceeehhhhhHH
Q 022650 260 CAVLGGTFALTGMLDR 275 (294)
Q Consensus 260 caIiGGvftv~~~id~ 275 (294)
.++|||++.++-++=.
T Consensus 15 ~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 15 TGMVGALLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4678888777765533
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.05 E-value=24 Score=22.50 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=10.9
Q ss_pred hhhhcceeehhhhhHH
Q 022650 260 CAVLGGTFALTGMLDR 275 (294)
Q Consensus 260 caIiGGvftv~~~id~ 275 (294)
.++|||++.++-++=.
T Consensus 14 ~gVVgGv~~v~ii~~~ 29 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHH
Confidence 4678888877765533
No 3
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=17.13 E-value=33 Score=20.24 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=7.3
Q ss_pred EeCccCCCe
Q 022650 18 TFPALPCDV 26 (294)
Q Consensus 18 tfp~~PC~~ 26 (294)
+||.+||..
T Consensus 10 ~l~~VPCsi 18 (32)
T 1brv_A 10 TLPYVPCST 18 (32)
T ss_pred ccccccccc
Confidence 489999975
No 4
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=11.52 E-value=79 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCeeeEEEEEEeCccCCCeeeeeeEecCCCe
Q 022650 8 GETLPIHINMTFPALPCDVLSVDAIDMSGKH 38 (294)
Q Consensus 8 ~~~l~In~DItfp~~PC~~l~lDv~D~~G~~ 38 (294)
.....|.|+-.|...|.=.+++..+|.....
T Consensus 30 ~~~~~V~F~~~F~~~P~V~v~l~~lD~~~~~ 60 (101)
T 2ccv_A 30 ELAKNITFASPYCRPPVVLLSITQLDVEQSQ 60 (101)
T ss_dssp EEEEEEECSSCCSSCCEEEEEEEEEEECTTS
T ss_pred EEEEEeEeCcccCCCCEEEEEeEEEecCCCc
Confidence 4468899999999999999999999997654
No 5
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=10.63 E-value=1.5e+02 Score=20.37 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=22.3
Q ss_pred HhhhhcceeehhhhhHHHHHHHHHHHcCc
Q 022650 259 LCAVLGGTFALTGMLDRWMYRLLEALTKP 287 (294)
Q Consensus 259 lcaIiGGvftv~~~id~~~~~~~~~~~k~ 287 (294)
+.+|++|.|+.-..+|...-.+...++|-
T Consensus 17 ~~~I~~gaf~fE~~fd~~~d~iw~~~NkG 45 (65)
T 3cx5_I 17 VGTIFAGAFVFQTVFDTAITSWYENHNKG 45 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhccCC
Confidence 56888899988888888877776666554
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.67 E-value=45 Score=23.86 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=13.9
Q ss_pred HhhhhcceeehhhhhHHHHHHHHHHHc
Q 022650 259 LCAVLGGTFALTGMLDRWMYRLLEALT 285 (294)
Q Consensus 259 lcaIiGGvftv~~~id~~~~~~~~~~~ 285 (294)
+.+|+||++ +.|++==++++....+.
T Consensus 14 v~gvi~gil-liGllllliwk~~~~i~ 39 (79)
T 2knc_B 14 LLSVMGAIL-LIGLAALLIWKLLITIH 39 (79)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456666653 34555455666554443
No 7
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=9.22 E-value=1.9e+02 Score=17.82 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=16.7
Q ss_pred ccHHHHHHHHhhhhcceeehhhhhHHHHH
Q 022650 250 RSFLHLITRLCAVLGGTFALTGMLDRWMY 278 (294)
Q Consensus 250 ~~~~~fl~~lcaIiGGvftv~~~id~~~~ 278 (294)
.|+..||.++.| ||+..++ +.-.+++
T Consensus 4 pSL~nFl~Sl~a--G~vvvv~-i~~ali~ 29 (39)
T 3arc_X 4 PSLKGFFIGLLS--GAVVLGL-TFAVLIA 29 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHH-HHHHhee
Confidence 578889988854 6665555 4444444
No 8
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=7.08 E-value=2.9e+02 Score=18.64 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=23.3
Q ss_pred HHhhhhcceeehhhhhHHHHHHHHHHHcCc
Q 022650 258 RLCAVLGGTFALTGMLDRWMYRLLEALTKP 287 (294)
Q Consensus 258 ~lcaIiGGvftv~~~id~~~~~~~~~~~k~ 287 (294)
=+.+|++|.|+.-..+|...-.....++|-
T Consensus 20 y~~~i~~gaf~fe~~~d~~~d~iw~~~NkG 49 (62)
T 1pp9_J 20 FALTIVVGALFFERAFDQGADAIYEHINEG 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Confidence 466888999988888888887777766654
No 9
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=6.60 E-value=2.5e+02 Score=24.31 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEeeeCCCCCCCCCCCCCceeeecCCceeeEEEEEEEEEEE
Q 022650 160 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEY 200 (294)
Q Consensus 160 ~~lsFG~~~~g~~nPLdg~~~~~~~~~~~~~Y~lkvVPT~y 200 (294)
=+|.|||+.|.. .|.. +...+ +||||+.-
T Consensus 164 I~LcFGEe~pd~-~p~e-------kkLI~----VqV~p~~a 192 (246)
T 3dsh_A 164 IFFCFGEEWPDR-KPRE-------KKLIT----VQVVPVAA 192 (246)
T ss_dssp EEEEESSCSSCS-SCGG-------GCSEE----EEEEEHHH
T ss_pred EEEEECCcCCCC-Cccc-------ccEEE----EEEEHHHH
Confidence 479999998753 3443 34455 89999754
No 10
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=6.56 E-value=1.5e+02 Score=26.60 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=14.8
Q ss_pred ceEEEEEEccc---eEEEEEeeec-cHHHHHH
Q 022650 230 PAVYFLYDLSP---ITVTIKEERR-SFLHLIT 257 (294)
Q Consensus 230 PgI~F~Yd~sP---i~v~~~~~r~-~~~~fl~ 257 (294)
-|-++.|++.+ +-|.+...|+ |..-||-
T Consensus 33 RGsWlefe~d~~d~~~vrIdr~rK~p~t~lLr 64 (296)
T 3lti_A 33 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILR 64 (296)
T ss_dssp BSCCEEEEECTTSCEEEEETTCCCEETHHHHH
T ss_pred CCceEEEEEcCCCeEEEEEcCcccchHHHHHH
Confidence 35556666655 4566654443 4444443
Done!