Query 022650
Match_columns 294
No_of_seqs 118 out of 560
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 08:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f3ka_ g.3.6.1 (A:) Conotoxin 13.1 23 0.0016 18.1 0.2 11 21-31 5-15 (26)
2 d1l9la_ a.64.1.1 (A:) Granulys 8.8 68 0.005 20.3 1.6 41 250-290 24-66 (74)
3 d1rpxa_ c.1.2.2 (A:) D-ribulos 8.7 56 0.004 25.9 1.3 12 23-34 36-47 (230)
4 d1tqxa_ c.1.2.2 (A:) D-ribulos 8.7 58 0.0043 25.5 1.5 11 23-33 28-38 (221)
5 d1tqja_ c.1.2.2 (A:) D-ribulos 8.5 60 0.0043 25.5 1.5 12 23-34 28-39 (221)
6 d1vg0a1 c.3.1.3 (A:3-444,A:558 7.7 79 0.0057 28.1 2.1 28 250-277 376-403 (491)
7 d2flia1 c.1.2.2 (A:3-219) D-ri 7.6 69 0.005 25.0 1.4 11 23-33 27-37 (217)
8 d1h1ya_ c.1.2.2 (A:) D-ribulos 7.5 71 0.0051 24.9 1.5 12 23-34 27-38 (220)
9 d3cx5i1 f.23.14.1 (I:4-58) Sub 7.2 1.2E+02 0.0088 18.5 2.2 29 259-287 15-43 (55)
10 d1qwta_ b.26.1.3 (A:) Interfer 6.9 1.6E+02 0.012 23.3 3.5 29 160-200 156-184 (239)
No 1
>d1f3ka_ g.3.6.1 (A:) Conotoxin {Conus textile, Tx VII [TaxId: 6494]}
Probab=13.07 E-value=23 Score=18.05 Aligned_cols=11 Identities=55% Similarity=1.069 Sum_probs=8.5
Q ss_pred ccCCCeeeeee
Q 022650 21 ALPCDVLSVDA 31 (294)
Q Consensus 21 ~~PC~~l~lDv 31 (294)
.-||+..++|.
T Consensus 5 depcdvfsldc 15 (26)
T d1f3ka_ 5 DEPCDVFSLDC 15 (26)
T ss_dssp TCCCCSSSCCS
T ss_pred CCCccEEEEec
Confidence 46899888874
No 2
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.78 E-value=68 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=31.4
Q ss_pred ccHHHHHHHHhhhhccee--ehhhhhHHHHHHHHHHHcCcccc
Q 022650 250 RSFLHLITRLCAVLGGTF--ALTGMLDRWMYRLLEALTKPSAR 290 (294)
Q Consensus 250 ~~~~~fl~~lcaIiGGvf--tv~~~id~~~~~~~~~~~k~~~~ 290 (294)
..+.++|.++|..+++-+ .+-.++|...-.+...+.....+
T Consensus 24 ~~I~~~l~~~C~~lp~~~~~~C~~lv~~Y~~~ii~~l~~~~~P 66 (74)
T d1l9la_ 24 RSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETA 66 (74)
T ss_dssp HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 568899999999999854 45688888888777777554443
No 3
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=8.69 E-value=56 Score=25.94 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.1
Q ss_pred CCCeeeeeeEec
Q 022650 23 PCDVLSVDAIDM 34 (294)
Q Consensus 23 PC~~l~lDv~D~ 34 (294)
-++++|+|++|-
T Consensus 36 g~d~iHiDImDG 47 (230)
T d1rpxa_ 36 GCDWIHVDVMDG 47 (230)
T ss_dssp TCCCEEEEEEBS
T ss_pred CCCEEEEeCccC
Confidence 467999999993
No 4
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}
Probab=8.66 E-value=58 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=9.9
Q ss_pred CCCeeeeeeEe
Q 022650 23 PCDVLSVDAID 33 (294)
Q Consensus 23 PC~~l~lDv~D 33 (294)
-++++|+|++|
T Consensus 28 ~~d~iHiDimD 38 (221)
T d1tqxa_ 28 GAEWIHLDVMD 38 (221)
T ss_dssp TCSEEEEEEEB
T ss_pred CCCEEEEECcc
Confidence 47899999999
No 5
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Probab=8.52 E-value=60 Score=25.48 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=10.2
Q ss_pred CCCeeeeeeEec
Q 022650 23 PCDVLSVDAIDM 34 (294)
Q Consensus 23 PC~~l~lDv~D~ 34 (294)
-+++||+|++|-
T Consensus 28 g~d~iHiDImDG 39 (221)
T d1tqja_ 28 GADWIHVDVMDG 39 (221)
T ss_dssp TCSEEEEEEEBS
T ss_pred CCCEEEEECccC
Confidence 478999999994
No 6
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.74 E-value=79 Score=28.12 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=22.4
Q ss_pred ccHHHHHHHHhhhhcceeehhhhhHHHH
Q 022650 250 RSFLHLITRLCAVLGGTFALTGMLDRWM 277 (294)
Q Consensus 250 ~~~~~fl~~lcaIiGGvftv~~~id~~~ 277 (294)
--+.|=+-|+|||-||+|++-.-|+.++
T Consensus 376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~ 403 (491)
T d1vg0a1 376 GELPQCFCRMCAVFGGIYCLRHSVQCLV 403 (491)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEE
T ss_pred chHHHHHHHHHHhcCcEEEcCCccceEE
Confidence 4578889999999999999876555543
No 7
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.60 E-value=69 Score=24.97 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=9.8
Q ss_pred CCCeeeeeeEe
Q 022650 23 PCDVLSVDAID 33 (294)
Q Consensus 23 PC~~l~lDv~D 33 (294)
-++++|+|++|
T Consensus 27 g~d~iHiDimD 37 (217)
T d2flia1 27 DAEYVHIDIMD 37 (217)
T ss_dssp TCCEEEEEEEB
T ss_pred CCCEEEEEccc
Confidence 47899999999
No 8
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=7.49 E-value=71 Score=24.93 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=10.3
Q ss_pred CCCeeeeeeEec
Q 022650 23 PCDVLSVDAIDM 34 (294)
Q Consensus 23 PC~~l~lDv~D~ 34 (294)
-++++|+|++|-
T Consensus 27 ~~d~iHiDimDg 38 (220)
T d1h1ya_ 27 GADWLHMDIMDG 38 (220)
T ss_dssp TCSEEEEEEEBS
T ss_pred CCCEEEEeeecC
Confidence 478999999993
No 9
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.23 E-value=1.2e+02 Score=18.54 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=22.5
Q ss_pred HhhhhcceeehhhhhHHHHHHHHHHHcCc
Q 022650 259 LCAVLGGTFALTGMLDRWMYRLLEALTKP 287 (294)
Q Consensus 259 lcaIiGGvftv~~~id~~~~~~~~~~~k~ 287 (294)
+.+|++|.|+.=..+|..+-++....+|-
T Consensus 15 ~~tI~~gAf~fe~~fD~~~d~~we~~NkG 43 (55)
T d3cx5i1 15 VGTIFAGAFVFQTVFDTAITSWYENHNKG 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 56888999988888888877777666654
No 10
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.92 E-value=1.6e+02 Score=23.28 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=19.9
Q ss_pred EEeeeCCCCCCCCCCCCCceeeecCCceeeEEEEEEEEEEE
Q 022650 160 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEY 200 (294)
Q Consensus 160 ~~lsFG~~~~g~~nPLdg~~~~~~~~~~~~~Y~lkvVPT~y 200 (294)
=.|.||+..|.. .|+... ..+ ++|||+.-
T Consensus 156 i~lcFGeewpd~-~p~ekk-------LI~----VqV~p~~a 184 (239)
T d1qwta_ 156 LWFCVGESWPQD-QPWTKR-------LVM----VKVVPTCL 184 (239)
T ss_dssp EEEEECCSCTTC-CTTTTC-------CEE----EEEEEHHH
T ss_pred EEEEeccccCCC-CCcccc-------eEE----EEEEHHHH
Confidence 369999999743 465543 344 89999664
Done!