BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022651
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1
SV=2
Length = 203
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 116/213 (54%), Gaps = 24/213 (11%)
Query: 68 AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREV 127
A+ KRSLR ++++ L+ M +R ++ + V+ S ++ S+ I ++S E+
Sbjct: 5 AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62
Query: 128 DTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD---LVANSMNILEP 184
+T I+ +I Q K ++PR ++++M M++I + ++ L S NI +P
Sbjct: 63 ETEEIIKDIF--------QRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP 114
Query: 185 SLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKW 244
+G+ E+ + ++ +DL+ +PGL FD+ G RLGRG GYYD +LK + Q Q+
Sbjct: 115 G----EGDVREEAL-STGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLK---RCLQHQEV 166
Query: 245 KQPLLVALLYSLQLVDEESIPVTPYDVPVDALV 277
K P +AL + Q+ + +PV D+ VD ++
Sbjct: 167 K-PYTLALAFKEQICLQ--VPVNENDMKVDEVL 196
>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus
GN=MTHFS PE=1 SV=1
Length = 201
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 114/208 (54%), Gaps = 24/208 (11%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
KRSLR+++++ L+ + +R + + V+ ++ S+ I ++S E++T I
Sbjct: 10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67
Query: 133 VSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISA---VKDLVANSMNILEPSLLDS 189
+ +I Q K ++PR ++++M M+K+++ + L S NI +PS D+
Sbjct: 68 IKDIF--------QQGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESDT 119
Query: 190 DGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLL 249
E+ + A+ +DL+ +PGL FDR+G RLGRG GYYD +L Q+ Q+Q K P
Sbjct: 120 R----EEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYL---QRCLQQQGAK-PYT 170
Query: 250 VALLYSLQLVDEESIPVTPYDVPVDALV 277
+AL + Q+ + +PV DV VD ++
Sbjct: 171 IALAFREQICPQ--VPVDDTDVSVDEVL 196
>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2
SV=2
Length = 203
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
KR LR+++++ L+ + +R ++ + V+ + ++ S+ I ++S EV+T I
Sbjct: 10 KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67
Query: 133 VSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLV---ANSMNILEPSLLDS 189
+ +I K ++PR + ++++M M+++++ +++ S NI +P
Sbjct: 68 IKDIFKQG--------KICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG---- 115
Query: 190 DGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLL 249
+G+ E+ + ++ +DL+ LPGL FD+ G RLGRG GYYD +LK + Q Q+ K P
Sbjct: 116 EGDVREEAL-STGGLDLIFLPGLGFDKDGNRLGRGKGYYDTYLK---RCVQHQEVK-PYT 170
Query: 250 VALLYSLQLVDEESIPVTPYDVPVDALV 277
+AL + Q+ + IPV +D+ VD ++
Sbjct: 171 MALAFKEQICPQ--IPVDEHDMKVDEVL 196
>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis
elegans GN=Y106G6E.4 PE=3 SV=1
Length = 206
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 66 LEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLR 125
+ AI + K LR ++ L + + ++ AV + ++ES WF+ S+ + Y+S +
Sbjct: 1 MSAIKEVKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG-- 58
Query: 126 EVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKI---SAVKDLVANSMNIL 182
E+ T I+ + L +M K++++P+ ++ M M+++ +A +L + I
Sbjct: 59 EIQTDSIIQKAL--------EMGKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIR 110
Query: 183 EPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQ 242
+P + + P+DL++ PG+AF G R G G GYYD F + K E
Sbjct: 111 QP-----EPKWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHHKHFPEN 165
Query: 243 KWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALV 277
P + L Q++ +IP++ DV +D ++
Sbjct: 166 ---SPKKIGLALREQIIG--TIPISETDVELDEVI 195
>sp|P44905|Y858_HAEIN Uncharacterized protein HI_0858 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0858 PE=1 SV=1
Length = 187
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 71 QKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTS 130
QK++ +R++IRK N+ +Q+ Q + +V L + ++NI Y S E+ T
Sbjct: 4 QKRQQIRTEIRKIRANLTALQQHQAEQSVTQHALNLIEQRQAKNIALYFSFDG--EISTK 61
Query: 131 RIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD--LVANSMNILEPSLLD 188
++ + K +Y+P V + +L + + D + N I EP L
Sbjct: 62 ALIQSLWMQ--------NKNVYLP-VLHPFTKHYLLFLRYLPDTPMKQNQFGIWEPKL-- 110
Query: 189 SDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPL 248
++V+ +E +D+L P +AFD+ G RLG GGG+YD L+ +Q K +
Sbjct: 111 ----NVQNVLPLNE-LDILFTPLVAFDKKGNRLGMGGGFYDRTLQNWQN-------KSFI 158
Query: 249 LVALLYSLQLVDEESIPVTPYDVPV-DALVS 278
V L Y Q V E++P +DVP+ D LV
Sbjct: 159 PVGLAYQCQQV--ENLPTEHWDVPLFDILVG 187
>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1703.08c PE=3 SV=1
Length = 204
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 20/215 (9%)
Query: 72 KKRSLRSKIRKDLKNM-DPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTS 130
KK LR+ + L + D I SQ + + +V W K +N+C Y++ +EV T
Sbjct: 4 KKNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEW-KRCKNVCLYMNMPK-KEVRTR 61
Query: 131 RIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKI-SAVKDLVANSMNILEPSLLDS 189
++ D + K +++P+ + M M ++ + L N I EP+
Sbjct: 62 CLI--------DVAFKEGKNVFIPKCIGSHV-MEMYQVFEKTESLTINKWGIAEPN---- 108
Query: 190 DGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLL 249
+ +M +L+I+PG+AFD RLG G GYYD ++ KYQ A +++ + +
Sbjct: 109 --GESRKIMDDETDCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMF 166
Query: 250 -VALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
V + Q++ IP+ D +DALV+P I
Sbjct: 167 KVGICLKEQILPNREIPMDTRDQKLDALVTPEKVI 201
>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1
Length = 199
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 71 QKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTS 130
Q ++ +RS IR ++ ++ E + + ++NI ++S E++T
Sbjct: 7 QNRKEIRSYIRIVRNSVTLTKKYDESNKIVRTAFNCNIIYNAKNIACFLSFDG--EINTY 64
Query: 131 RIVSEILSNQTDGNGQMRKKLYVPRVEDKNS-NMRMLKISAVKDLVANSMNILEPSLLDS 189
++ ++ N K +++P V S + + + L N NIL+P
Sbjct: 65 PLILKLWLNN--------KNVFLPIVSSSYSRKLFFVPFTCKSILYYNQYNILQPFY--- 113
Query: 190 DGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLL 249
+D++ S+ +DL+I+P +AFD G RLG GGG+YD FLK +++ K+ +
Sbjct: 114 ---NMKDIILESD-LDLIIVPLVAFDCRGVRLGMGGGFYDQFLKNWER-------KKFIP 162
Query: 250 VALLYSLQLVDEESIPVTPYDVPVDALVSP 279
+ + Y Q V+ IP P+D+ + +++P
Sbjct: 163 IGMAYDFQFVN--YIPRQPWDISLPIVLTP 190
>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12)
GN=ygfA PE=1 SV=1
Length = 182
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 27/169 (15%)
Query: 112 SRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNS-NMRMLKISA 170
+ + ++S E+DT ++ ++ + K++Y+P + ++ N+ L
Sbjct: 34 AHTVAVFLSFDG--ELDTQPLIEQLW--------RAGKRVYLPVLHPFSAGNLLFLNYHP 83
Query: 171 VKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDV 230
+LV N + I EP L DV+ S +D+LI P +AFD G RLG GGG+YD
Sbjct: 84 QSELVMNRLKIHEPKL------DVRDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDR 136
Query: 231 FLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSP 279
L+ +Q QP V + QLV E +PV +D+P+ A+V+P
Sbjct: 137 TLQNWQHYK-----TQP--VGYAHDCQLV--EKLPVEEWDIPLPAVVTP 176
>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA
PE=3 SV=1
Length = 182
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 27/169 (15%)
Query: 112 SRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNS-NMRMLKISA 170
+ + ++S E+DT ++ ++ + K++Y+P + ++ N+ L
Sbjct: 34 AHTVAVFLSFDG--ELDTQPLIEQLW--------RAGKRVYLPVLHPFSAGNLLFLNYHP 83
Query: 171 VKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDV 230
+LV N + I EP L DV+ S +D+LI P +AFD G RLG GGG+YD
Sbjct: 84 QSELVMNRLKIHEPKL------DVRDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDR 136
Query: 231 FLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSP 279
L+ +Q QP V + QLV E +PV +D+P+ A+V+P
Sbjct: 137 TLQNWQHYK-----TQP--VGYAHDCQLV--EKLPVEEWDIPLPAVVTP 176
>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1
Length = 211
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 41/228 (17%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
K+ LR +I++ + +D + E + V SR + Y+S EV T I
Sbjct: 4 KQLLRRQIKRVINALDYDIIAAESHTISQAVRSLIASANSRRVACYMSMDK-GEVTTGEI 62
Query: 133 VSEILSNQTDGNGQMRKKLYVPRV------------EDKNSNM---RMLKISAVKDLVAN 177
+ + DG +++++PR ED + ++ RM + V+DL
Sbjct: 63 IKNLFQ---DG-----QEVFLPRCTHTSESKHFKLREDHHPHLIFHRMSSLKMVRDLKPQ 114
Query: 178 S-MNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFD-RSGGRLGRGGGYYDVFLKKY 235
+ EP E ++ S+ +D++++PG+AFD ++G R+G G GYYD F ++Y
Sbjct: 115 GPYQLKEP----------EPHIEESDILDVVLVPGVAFDIKTGARMGHGAGYYDDFFQRY 164
Query: 236 QKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
+ L + QK PLLV L Q+ IP+ +D +D +V G I
Sbjct: 165 KILHEGQK---PLLVGLCLMEQVA--SPIPLEKHDYSMDCIVCGDGSI 207
>sp|P54491|YQGN_BACSU Uncharacterized protein YqgN OS=Bacillus subtilis (strain 168)
GN=yqgN PE=1 SV=1
Length = 187
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 204 VDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEES 263
+DL+I+PG+ FD +G R+G GGGYYD +L +Y+ V+LL QL
Sbjct: 116 IDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKT----------VSLLLECQLF--AH 163
Query: 264 IPVTPYDVPVDALVS 278
+P P+D+PV L++
Sbjct: 164 VPRLPHDIPVHKLIT 178
>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1
Length = 195
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 70 FQKK--RSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREV 127
FQ+K R LR KI + R Q ++ + + + +NI I C+ E+
Sbjct: 8 FQRKYFRKLRKKINNKI-------REQLAISISKKIFYCNILDSVKNIA--IFCSFDGEI 58
Query: 128 DTSRIVSEILSNQTDGNGQMRKKLYVPRVE-DKNSNMRMLKISAVKDLVANSMNILEPSL 186
DT ++ ++ + +Y+P + + + +K L+ N NILEP
Sbjct: 59 DTYPLILKLWRQNYN--------VYLPIINYNYKKILGFMKYLPNTSLIKNRFNILEPVF 110
Query: 187 LDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQ 246
+ Q +D+ D++ +P +AFD G RLG GGG+YD L Y K
Sbjct: 111 DRKNFIQSDDL-------DIMFVPLVAFDEFGYRLGMGGGFYDRILINYDIK------KS 157
Query: 247 PLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGF 282
+ L + Q ++I + +DV + +++P+ F
Sbjct: 158 FFPIGLAFDCQF--SKNINIKYWDVALPVIITPKKF 191
>sp|P75430|MTHFS_MYCPN Probable 5-formyltetrahydrofolate cyclo-ligase OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_348 PE=1
SV=1
Length = 164
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 163 MRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLG 222
LKI+ ++ + ++ E +D + N E +D ++P + F++ RLG
Sbjct: 63 FEFLKINQIRAVYPKVISDTEIIFIDQETNTFE-----PNQIDCFLIPLVGFNKDNYRLG 117
Query: 223 RGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVS 278
G GYYD +L + + +QP + + YS Q D P+DV +D +++
Sbjct: 118 FGKGYYDRYLMQLTR-------QQP-KIGIAYSFQKGD---FLADPWDVQLDLIIN 162
>sp|P47487|MTHFS_MYCGE Probable 5-formyltetrahydrofolate cyclo-ligase OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG245 PE=3 SV=1
Length = 165
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 151 LYVP---RVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLL 207
LY+P V ++ + LK++ + + ++ +D + N+ +D
Sbjct: 49 LYIPIKNEVAFLDNFLDFLKLNKITSCFPSIVDQFNMKFIDQNNNEIN-----PNDIDCF 103
Query: 208 ILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVT 267
+P LAF+++ R+G G GYYD +Y L +++ K + + Y Q + +
Sbjct: 104 FIPLLAFNKANHRIGFGKGYYD----RYLSLTSKKQLK----IGIAYDFQYAEFTN---D 152
Query: 268 PYDVPVDALV 277
P+D +D ++
Sbjct: 153 PWDYQLDLII 162
>sp|Q2M296|MTHSD_HUMAN Methenyltetrahydrofolate synthase domain-containing protein OS=Homo
sapiens GN=MTHFSD PE=1 SV=2
Length = 383
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 204 VDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEES 263
VDL+++ +A G R+G+G GY D L+ ++ K+ +V +++ Q+VD
Sbjct: 134 VDLVVVGSVAVSEKGWRIGKGEGYAD--LEYAMMVSMGAVSKETPVVTIVHDCQVVDIPE 191
Query: 264 IPVTPYDVPVDALVSP 279
V +D+ VD +++P
Sbjct: 192 ELVEEHDITVDYILTP 207
>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1
Length = 657
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 136 ILSNQTDGNGQMRKKLYVP----RVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDG 191
+ +N T + R L+ P S ++ LK+S + + N + + + +D
Sbjct: 398 LYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLSHSR-FIFNYVPHPKGARIDVSI 456
Query: 192 NQCEDVMQASEPVDLLILPGLAFDRSG 218
N+C D P D+L PG AF R+G
Sbjct: 457 NECYDGSYVGNPQDILCQPGFAFSRNG 483
>sp|Q2KI24|MTHSD_BOVIN Methenyltetrahydrofolate synthase domain-containing protein OS=Bos
taurus GN=MTHFSD PE=2 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 204 VDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPL-LVALLYSLQLVDEE 262
VDL+++ +A G R+G+G GY D+ +Y + Q +V +++ Q+VD
Sbjct: 133 VDLVVVGSVAVSEKGWRIGKGEGYADL---EYAMMVSMGAVSQGTPVVTIVHDCQVVDIP 189
Query: 263 SIPVTPYDVPVDALVSP 279
+ +D+ VD +++P
Sbjct: 190 EALLEDHDLTVDYILTP 206
>sp|Q06706|ELP1_YEAST Elongator complex protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IKI3 PE=1 SV=1
Length = 1349
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 118 YISCASLREVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVAN 177
Y S SL +V + +V++ QM + Y+P +++ N + + + D + N
Sbjct: 925 YKSALSLYDVSLALLVAQ--------KSQMDPREYLPFLQELQDNEPLRRKFLIDDYLGN 976
Query: 178 SMNILEP-SLLDSDGNQCEDVMQASEPVDLLILPGLAFDR 216
LE S +D DGN E+V+ E DL GLA R
Sbjct: 977 YEKALEHLSEIDKDGNVSEEVIDYVESHDLY-KHGLALYR 1015
>sp|Q8NX96|ATL_STAAW Bifunctional autolysin OS=Staphylococcus aureus (strain MW2) GN=atl
PE=3 SV=1
Length = 1256
Score = 31.2 bits (69), Expect = 8.3, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 57 NNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNIC 116
N NV+D ++++A ++ ++ +++ +N+ Q Q+ VQ K + N
Sbjct: 39 NKNVLDSNKVKATTEQAKA---EVKNPTQNISGTQVYQDPAIVQP--------KTANNKT 87
Query: 117 AYISCASLREVDTSRIVSEILSNQ--TDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDL 174
+ ++VDT+++ + +NQ T N Q K N+N+ S V D
Sbjct: 88 GNAQVS--QKVDTAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDE 145
Query: 175 VANSMNILEPSLLDS 189
NS N + P L+ S
Sbjct: 146 DDNSENQINPELIKS 160
>sp|Q6GAG0|ATL_STAAS Bifunctional autolysin OS=Staphylococcus aureus (strain MSSA476)
GN=atl PE=3 SV=1
Length = 1250
Score = 31.2 bits (69), Expect = 8.4, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 57 NNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNIC 116
N NV+D ++++A ++ ++ +++ +N+ Q Q+ VQ K + N
Sbjct: 39 NKNVLDSNKVKATTEQAKA---EVKNPTQNISGTQVYQDPAIVQP--------KTANNKT 87
Query: 117 AYISCASLREVDTSRIVSEILSNQ--TDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDL 174
+ ++VDT+++ + +NQ T N Q K N+N+ S V D
Sbjct: 88 GNAQVS--QKVDTAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDE 145
Query: 175 VANSMNILEPSLLDS 189
NS N + P L+ S
Sbjct: 146 DDNSENQINPELIKS 160
>sp|Q5HH31|ATL_STAAC Bifunctional autolysin OS=Staphylococcus aureus (strain COL) GN=atl
PE=3 SV=1
Length = 1256
Score = 31.2 bits (69), Expect = 8.4, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 57 NNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNIC 116
N NV+D ++++A ++ ++ +++ +N+ Q Q+ VQ K + N
Sbjct: 39 NKNVLDSNKVKATTEQAKA---EVKNPTQNISGTQVYQDPAIVQP--------KTANNKT 87
Query: 117 AYISCASLREVDTSRIVSEILSNQ--TDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDL 174
+ ++VDT+++ + +NQ T N Q K N+N+ S V D
Sbjct: 88 GNAQVS--QKVDTAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDE 145
Query: 175 VANSMNILEPSLLDS 189
NS N + P L+ S
Sbjct: 146 DDNSENQINPELIKS 160
>sp|Q2FZK7|ATL_STAA8 Bifunctional autolysin OS=Staphylococcus aureus (strain NCTC 8325)
GN=atl PE=1 SV=1
Length = 1256
Score = 31.2 bits (69), Expect = 8.4, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 57 NNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNIC 116
N NV+D ++++A ++ ++ +++ +N+ Q Q+ VQ K + N
Sbjct: 39 NKNVLDSNKVKATTEQAKA---EVKNPTQNISGTQVYQDPAIVQP--------KTANNKT 87
Query: 117 AYISCASLREVDTSRIVSEILSNQ--TDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDL 174
+ ++VDT+++ + +NQ T N Q K N+N+ S V D
Sbjct: 88 GNAQVS--QKVDTAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDE 145
Query: 175 VANSMNILEPSLLDS 189
NS N + P L+ S
Sbjct: 146 DDNSENQINPELIKS 160
>sp|Q6BVB2|ALG11_DEBHA GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=ALG11 PE=3 SV=2
Length = 616
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 230 VFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPV 288
V+L+KY +L WK+ L+ L+ ++ E++ DV +D + P ++ +S V
Sbjct: 183 VYLRKYARLIDGDYWKRFTLIGQLFGSMVLSWEAMFELSPDVWIDTIGLPGSYLLVSLV 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,547,627
Number of Sequences: 539616
Number of extensions: 4288727
Number of successful extensions: 11144
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 11117
Number of HSP's gapped (non-prelim): 37
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)