Query 022651
Match_columns 294
No_of_seqs 220 out of 1146
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02812 5-formyltetrahydrofol 100.0 4.1E-54 8.9E-59 385.5 21.7 205 69-283 3-211 (211)
2 PRK10333 5-formyltetrahydrofol 100.0 3.9E-52 8.4E-57 364.9 20.4 180 80-285 2-182 (182)
3 PF01812 5-FTHF_cyc-lig: 5-for 100.0 1.1E-51 2.5E-56 361.4 17.8 183 73-279 1-186 (186)
4 TIGR02727 MTHFS_bact 5,10-meth 100.0 2.7E-50 5.8E-55 352.4 19.9 180 73-279 1-181 (181)
5 KOG3093 5-formyltetrahydrofola 100.0 3.5E-49 7.6E-54 339.8 15.3 196 67-280 2-200 (200)
6 COG0212 5-formyltetrahydrofola 100.0 2.7E-47 5.9E-52 336.7 20.2 186 71-285 3-190 (191)
7 KOG4410 5-formyltetrahydrofola 99.7 9.4E-17 2E-21 147.2 11.9 187 67-286 28-239 (396)
8 TIGR02910 sulfite_red_A sulfit 57.4 1.1E+02 0.0025 29.5 10.3 131 128-281 9-162 (334)
9 PRK01175 phosphoribosylformylg 48.9 34 0.00074 31.8 5.2 63 202-266 47-110 (261)
10 COG1332 CRISPR system related 36.2 14 0.0003 36.2 0.4 15 220-234 304-318 (369)
11 PRK01631 hypothetical protein; 32.9 24 0.00052 26.9 1.2 18 37-54 30-47 (76)
12 PRK02539 hypothetical protein; 30.3 26 0.00057 27.2 1.0 27 37-63 31-60 (85)
13 PF10001 DUF2242: Uncharacteri 26.0 35 0.00076 28.2 1.1 13 224-236 106-118 (121)
14 PRK13146 hisH imidazole glycer 25.0 26 0.00057 31.1 0.2 53 202-261 40-92 (209)
15 TIGR01899 cas_TM1807_csm5 CRIS 24.0 30 0.00066 33.8 0.5 15 219-233 299-313 (365)
16 PRK01546 hypothetical protein; 22.8 43 0.00094 25.7 1.0 18 37-54 32-49 (79)
17 PRK13730 conjugal transfer pil 20.4 3.2E+02 0.0069 24.8 6.2 53 84-138 62-114 (212)
18 PF03263 Cucumo_2B: Cucumoviru 20.2 3.2E+02 0.0069 21.9 5.4 43 65-110 10-55 (103)
No 1
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=4.1e-54 Score=385.45 Aligned_cols=205 Identities=66% Similarity=1.078 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCC
Q 022651 69 IFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMR 148 (294)
Q Consensus 69 ~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~G 148 (294)
+.+.|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|+++.+||||.+|++.+++ .|
T Consensus 3 ~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~--------~g 74 (211)
T PLN02812 3 IREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ--------NP 74 (211)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH--------cC
Confidence 5678999999999999999999999999999999999999999999999999982239999999999998 89
Q ss_pred -cEEEeeeEecCCCceEEEEcCCC-cccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCc
Q 022651 149 -KKLYVPRVEDKNSNMRMLKISAV-KDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGG 226 (294)
Q Consensus 149 -K~V~vP~v~~~~~~m~f~~~~~~-~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgG 226 (294)
|+|+||++.+.+..|.|+.|.+. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||||||
T Consensus 75 ~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~GgG 154 (211)
T PLN02812 75 DKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGG 154 (211)
T ss_pred CcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCCCc
Confidence 99999999765446999999986 7899999999999753111100001111356789999999999999999999999
Q ss_pred chHHHHHHhhhhHhhhhccCceEEEEEccccccc--CCCCCCCCCcccCCEEEeCCceE
Q 022651 227 YYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVD--EESIPVTPYDVPVDALVSPRGFI 283 (294)
Q Consensus 227 YYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd--~~~lP~e~hDiplD~IITe~gvi 283 (294)
||||||+.++.......+.++.+|||||++|+++ + ||+|+||+|||+||||+|++
T Consensus 155 yYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~--iP~e~hD~~ld~iiTe~~vi 211 (211)
T PLN02812 155 YYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGS--VPVDETDVLVDALVTPSGVI 211 (211)
T ss_pred hHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCC--CCCccccccCCEEEcCCcCC
Confidence 9999999875211001122466899999999999 8 99999999999999999974
No 2
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=3.9e-52 Score=364.87 Aligned_cols=180 Identities=28% Similarity=0.485 Sum_probs=160.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcEEEeeeEecC
Q 022651 80 IRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDK 159 (294)
Q Consensus 80 ~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~V~vP~v~~~ 159 (294)
++++|++|+++++...|++|+++|.+++.|+++++|++|+|++ +||||.+|++.+++ .||+|+||+|.+.
T Consensus 2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------~gk~v~lP~v~~~ 71 (182)
T PRK10333 2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR--------AGKRVYLPVLHPF 71 (182)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH--------CCCEEEEeEEecC
Confidence 5788999999999999999999999999999999999999998 69999999999998 8999999999764
Q ss_pred -CCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchHHHHHHhhhh
Q 022651 160 -NSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKL 238 (294)
Q Consensus 160 -~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYDRfL~~~~~~ 238 (294)
...|.|+.+++.++|++|.|||+||.... .. ..+...+|+|||||||||++|+|||||||||||||+.++.
T Consensus 72 ~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~------~~-~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~- 143 (182)
T PRK10333 72 SAGNLLFLNYHPQSELVMNRLKIHEPKLDV------RD-VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQH- 143 (182)
T ss_pred CCCEEEEEECCCCCccccCCCCCCCCCccc------cc-cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcc-
Confidence 24599999999899999999999997421 01 1135678999999999999999999999999999998753
Q ss_pred HhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCceEec
Q 022651 239 AQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPI 285 (294)
Q Consensus 239 ~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gvi~~ 285 (294)
.++.+|||||++|++++ ||+|+||+|||+||||+|++.+
T Consensus 144 ------~~~~~igla~~~Q~~~~--ip~e~hD~~ld~iiTe~~~~~~ 182 (182)
T PRK10333 144 ------YKTQPVGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKVWEW 182 (182)
T ss_pred ------cCCcEEEEeeeeEEeCC--cCCCcccCcCCEEEeCCeEEeC
Confidence 13458999999999999 9999999999999999999864
No 3
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=1.1e-51 Score=361.44 Aligned_cols=183 Identities=34% Similarity=0.651 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcEEE
Q 022651 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLY 152 (294)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~V~ 152 (294)
|++||++++++|++|+++++...|+.|+++|.+++.++++++|++|+|++ +|+||.+|++.+++ .||+|+
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~--------~gk~v~ 70 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK--------DGKRVY 70 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH--------TTCEEE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH--------cCCeEe
Confidence 89999999999999999999999999999999999999999999999998 69999999999999 999999
Q ss_pred eeeEecCC---CceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchH
Q 022651 153 VPRVEDKN---SNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYD 229 (294)
Q Consensus 153 vP~v~~~~---~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYD 229 (294)
+|++..+. ..|.|+.+...++|.+|.|||+||..... .......+|||||||||||++|+||||||||||
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgGyYD 143 (186)
T PF01812_consen 71 LPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGGYYD 143 (186)
T ss_dssp EEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSSTHHH
T ss_pred cceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCCHHH
Confidence 99998865 24678888888999999999999975310 111123789999999999999999999999999
Q ss_pred HHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeC
Q 022651 230 VFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSP 279 (294)
Q Consensus 230 RfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe 279 (294)
|||+.++. ....+.+|||||++|++++ ||+|+||++||+||||
T Consensus 144 R~L~~~~~-----~~~~~~~igl~~~~q~~~~--iP~e~hD~~ld~iiTe 186 (186)
T PF01812_consen 144 RFLARLPP-----GRKKPLKIGLAFDFQIVDD--IPVEPHDIPLDAIITE 186 (186)
T ss_dssp HHHHHHTS------SS--EEEEEE-GGGEES-------TTS-B-SEEEET
T ss_pred hHHHhhhc-----ccCCCeEEEEeehhheeCC--CCCCcccccCCEEEcC
Confidence 99999864 1235789999999999998 9999999999999998
No 4
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=2.7e-50 Score=352.36 Aligned_cols=180 Identities=34% Similarity=0.586 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcEEE
Q 022651 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLY 152 (294)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~V~ 152 (294)
|++||++++++|++++.+++...|..|+++|.+++.|+++++|++|+|++ +|+||.+|++.+++ .||+|+
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~--------~~k~v~ 70 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK--------EGKRVA 70 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH--------CCCEEE
Confidence 67899999999999999999999999999999999999999999999998 69999999999998 899999
Q ss_pred eeeEecCC-CceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchHHH
Q 022651 153 VPRVEDKN-SNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVF 231 (294)
Q Consensus 153 vP~v~~~~-~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYDRf 231 (294)
||++.+++ ..|.|..+...++|..+.|||+||.... ... ...+.+|+|||||||||++|+||||||||||||
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~------~~~-~~~~~idlvivP~lafD~~G~RLG~GgGyYDR~ 143 (181)
T TIGR02727 71 LPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDS------TEP-VDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDRF 143 (181)
T ss_pred EEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcc------cCc-CCcccCCEEEeCceEEcCCCccccCCcchHHHH
Confidence 99998654 2356667776668999999999997421 001 135678999999999999999999999999999
Q ss_pred HHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeC
Q 022651 232 LKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSP 279 (294)
Q Consensus 232 L~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe 279 (294)
|+.++. .+.+|||+|++|+++. +|+|+||++||+||||
T Consensus 144 L~~~~~--------~~~~igv~~~~q~~~~--lp~e~~Di~ld~iiTe 181 (181)
T TIGR02727 144 LANLKG--------KTVVVGLAFDFQLVDE--LPREPHDVPVDAIITE 181 (181)
T ss_pred HHhccc--------CCCEEEEEecceeeCc--cCCCccCccCCEEeCC
Confidence 998743 2348999999999999 9999999999999997
No 5
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.5e-49 Score=339.77 Aligned_cols=196 Identities=39% Similarity=0.670 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCC
Q 022651 67 EAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQ 146 (294)
Q Consensus 67 ~~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~ 146 (294)
+.+...|+.||+.++..+++|+++.+.++|++|+++++++++|+++++|++|+||.+ +||+|..||+.+++
T Consensus 2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq-------- 72 (200)
T KOG3093|consen 2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ-------- 72 (200)
T ss_pred chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence 457788999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred CCcEEEeeeEecCCCceEEEEcCCCccc---ccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeecc
Q 022651 147 MRKKLYVPRVEDKNSNMRMLKISAVKDL---VANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGR 223 (294)
Q Consensus 147 ~GK~V~vP~v~~~~~~m~f~~~~~~~~L---~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~ 223 (294)
.||.||+|++...+..|.++++...+.+ ..+.|||++|.+. ..+++.......+|||||||||||+.|.|||+
T Consensus 73 ~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~----~~re~~~~t~~~lDLiivPGvAFd~~g~RlGh 148 (200)
T KOG3093|consen 73 DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPG----GPREDALETGHPLDLIIVPGVAFDRKGARLGH 148 (200)
T ss_pred cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCC----CchhhhccCCCcceEEEecccccchhhhhccC
Confidence 9999999999877778999999887554 4578999999863 34566554445799999999999999999999
Q ss_pred CCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCC
Q 022651 224 GGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPR 280 (294)
Q Consensus 224 GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~ 280 (294)
|+||||+||.++.... .+.+|.+||||+.+|++.+ ||+++||+.||.||||+
T Consensus 149 GkGYYD~flkry~~~~---~~~kp~~vgL~l~EQI~~~--IPv~~~Dv~lD~vvt~~ 200 (200)
T KOG3093|consen 149 GKGYYDDFLKRYQIHA---PEQKPLLVGLCLKEQILSE--IPVEEHDVKLDAVVTED 200 (200)
T ss_pred CcchHHHHHHHHHHhc---cccCchhhhhhhhHhhccc--CCCCccceeeeEeecCC
Confidence 9999999999997642 5778999999999999998 99999999999999985
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-47 Score=336.72 Aligned_cols=186 Identities=31% Similarity=0.566 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcE
Q 022651 71 QKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKK 150 (294)
Q Consensus 71 ~~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~ 150 (294)
+.|++||++++++|.+|++..+...+..+++++..++.+.++++|++|+|++ +|+||.++++.+|+ +||+
T Consensus 3 ~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~--------~gk~ 72 (191)
T COG0212 3 ATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR--------RGKR 72 (191)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH--------cCCE
Confidence 5799999999999999999999999999999999999999999999999998 69999999999998 9999
Q ss_pred EEeeeEecCCCceEEEEcCCC--cccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcch
Q 022651 151 LYVPRVEDKNSNMRMLKISAV--KDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYY 228 (294)
Q Consensus 151 V~vP~v~~~~~~m~f~~~~~~--~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYY 228 (294)
|++|++.+ ..+.|..+.+. ..+..+.|||.||.... . .+ .+ ..+|+||||+||||++|+|||||||||
T Consensus 73 l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~---~---~~-~~-~~iDlvlvP~Vafd~~G~RLG~GgGyY 142 (191)
T COG0212 73 LLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYG---R---KI-PP-PEIDLVLVPLVAFDKQGYRLGYGGGYY 142 (191)
T ss_pred EEEeEEEc--CcceeEEecCCCCcccccccccccCCCccC---C---cc-CC-CcCCEEEeCceeECCCCccccCCCchH
Confidence 99999986 34778888887 88899999999997532 1 11 12 678999999999999999999999999
Q ss_pred HHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCceEec
Q 022651 229 DVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPI 285 (294)
Q Consensus 229 DRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gvi~~ 285 (294)
||||+.+. ..++.+||++|++|++|. +|.|+||+|||.||||++++.+
T Consensus 143 DR~la~~~-------~~~~~~ig~~~~~Q~v~~--lP~e~hDv~ld~ivt~~~~~~~ 190 (191)
T COG0212 143 DRYLANLR-------GRKTPTVGIAYDCQLVDH--LPREPHDVPLDAIVTEEGVIRC 190 (191)
T ss_pred HHHHHhhc-------cCCCCEEEEEEeeeeecc--CCCCcccCcccEEEeCCceEec
Confidence 99999885 135679999999999999 9999999999999999999876
No 7
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=99.70 E-value=9.4e-17 Score=147.18 Aligned_cols=187 Identities=21% Similarity=0.299 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHHHHHhc----CCHHHHH------HHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHH
Q 022651 67 EAIFQKKRSLRSKIRKDLKN----MDPIQRS------QEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEI 136 (294)
Q Consensus 67 ~~~~~~K~~LRk~~~~~R~~----ls~~~r~------~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~a 136 (294)
.++...|..+|.+++....+ +++.-.. ..+.++|+.+.++..|+.|+.|-+-. .-.+..+...+
T Consensus 28 qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnp------D~pl~~~r~L~ 101 (396)
T KOG4410|consen 28 QDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNP------DRPLHEFRELA 101 (396)
T ss_pred CCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCC------CchHHHHHHHH
Confidence 46788899999999987543 3332211 24567788888999999999998753 22466677777
Q ss_pred HhcCCCCCCCCCcEEEeeeEecCCCceEEEEcCCCcc-----ccc-------ccCCccCCCCCCCCCCccccccccCCCC
Q 022651 137 LSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD-----LVA-------NSMNILEPSLLDSDGNQCEDVMQASEPV 204 (294)
Q Consensus 137 l~~~~~~~~~~GK~V~vP~v~~~~~~m~f~~~~~~~~-----L~~-------g~~GI~EP~~~~~~~~~~~~~~~~~~~i 204 (294)
|. ..|.+++|...... --|..++...+ +.. .+|+. +.. ++.--.+
T Consensus 102 L~--------~~Ksll~PspRlrt--glf~kv~~~~~ate~i~~~c~tsqgv~ky~~--~IG-----------LDs~lkv 158 (396)
T KOG4410|consen 102 LL--------ADKSLLLPSPRLRT--GLFLKVDVLADATEEIKKECLTSQGVQKYRS--EIG-----------LDSGLKV 158 (396)
T ss_pred hh--------cccceecCCchhhc--ceeeeeccCCCCcHHHHHHHHhhhhHHHhCc--ccc-----------cccCceE
Confidence 76 78999999875433 23556654311 111 12332 221 1122468
Q ss_pred cEEEEeceeEeCCCCeeccCCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCC---CCCcccCCEEEeCCc
Q 022651 205 DLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPV---TPYDVPVDALVSPRG 281 (294)
Q Consensus 205 DLiIVPglAFD~~G~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~---e~hDiplD~IITe~g 281 (294)
|||+|..||+++.|+|||.|-||-|--...+..++ ...+++++|.++||||+||+ ||. +.||+|||+|.||++
T Consensus 159 DlvViGSVavs~~G~RiGkGeGfAdLeygmli~mG--Ai~~~TpvVTiVHDcQvVD~--iP~el~~~hD~pVDiI~TPTr 234 (396)
T KOG4410|consen 159 DLVVIGSVAVSREGYRIGKGEGFADLEYGMLIEMG--AITPKTPVVTIVHDCQVVDS--IPPELFQKHDTPVDIIATPTR 234 (396)
T ss_pred EEEEEeeEEecccceeeccCCchhhhhhHHHHHhc--ccCCCCceEEEEecceeecc--CCHHHHhhcCCCccEEeccce
Confidence 99999999999999999999999999999887765 34456778999999999999 996 589999999999999
Q ss_pred eEecC
Q 022651 282 FIPIS 286 (294)
Q Consensus 282 vi~~~ 286 (294)
+|+..
T Consensus 235 vI~t~ 239 (396)
T KOG4410|consen 235 VIRTP 239 (396)
T ss_pred EEecC
Confidence 99875
No 8
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=57.39 E-value=1.1e+02 Score=29.54 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=69.7
Q ss_pred ChHHHHHHHHhcCCCCCCCCCcEEEeeeEec-CC-----CceEEEEcCCCcccccccCCccCCCCCCCCCCcccccc---
Q 022651 128 DTSRIVSEILSNQTDGNGQMRKKLYVPRVED-KN-----SNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVM--- 198 (294)
Q Consensus 128 dt~~Li~~al~~~~~~~~~~GK~V~vP~v~~-~~-----~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~--- 198 (294)
++..+++.+.+ ..+|+.|+..+ ++ ....|..|.+.+++.-+ +.-..|... ..-..++.++
T Consensus 9 ~l~~ll~~L~~---------~y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~-~~~~~spK~-~lfP~~E~L~~f~ 77 (334)
T TIGR02910 9 EFNLLLQKLNK---------DYKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFH-EKSHFSPKE-IILPITETLFYFT 77 (334)
T ss_pred HHHHHHHHHHh---------CCEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccC-CCCCCCchh-hccCCcceeEEEE
Confidence 46677877654 49999999853 22 25678888887777654 221111110 0000011111
Q ss_pred ----c--cCCCCcEEEEeceeEeCCCCe----eccCCcchHHHHHHhhhhHhhhhccCceEEEEEccc----ccccCCCC
Q 022651 199 ----Q--ASEPVDLLILPGLAFDRSGGR----LGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSL----QLVDEESI 264 (294)
Q Consensus 199 ----~--~~~~iDLiIVPglAFD~~G~R----LG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~----Qivd~~~l 264 (294)
. ....-..||. .=+.|.++-. +=-++||.|-|....++ +...||++=.. ...-. .
T Consensus 78 ~~~~~~~~~~~~~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe--------~~~iV~~~C~~~~~tCFC~S--m 146 (334)
T TIGR02910 78 EDTVQEAETDKKNIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLRE--------KVKFVLIECEESFENCFCVS--M 146 (334)
T ss_pred cCcccccCCCCCcEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHh--------CcEEEEEeCCCCCCCeeEec--c
Confidence 0 0111235556 8899988832 22278999999987654 34556654322 22222 3
Q ss_pred CCCCCcccCCEEEeCCc
Q 022651 265 PVTPYDVPVDALVSPRG 281 (294)
Q Consensus 265 P~e~hDiplD~IITe~g 281 (294)
-..+.| -.|+.+|+.+
T Consensus 147 Gt~p~~-g~Dl~lt~~~ 162 (334)
T TIGR02910 147 GTNKTD-CYSAAVRFSE 162 (334)
T ss_pred CCCCCC-CccEEEEEeC
Confidence 344444 5566666643
No 9
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=48.89 E-value=34 Score=31.80 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCcEEEEeceeEeCCCCeeccCCcchHHHHHHhhhhHhhhhccCceEEEEEccccccc-CCCCCC
Q 022651 202 EPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVD-EESIPV 266 (294)
Q Consensus 202 ~~iDLiIVPglAFD~~G~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd-~~~lP~ 266 (294)
.+.|.||+|| +|+- |..++.|..+-.++...+....+.......+++|+|.-+|++- .+.||-
T Consensus 47 ~~~DgLvipG-Gfs~-gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 47 SDYDCLVIPG-GFSA-GDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred hhCCEEEECC-CCCc-ccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 4679999999 4532 3457766654333322110100011112346899999999874 456775
No 10
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=36.25 E-value=14 Score=36.20 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.2
Q ss_pred eeccCCcchHHHHHH
Q 022651 220 RLGRGGGYYDVFLKK 234 (294)
Q Consensus 220 RLG~GgGYYDRfL~~ 234 (294)
+||||||||-.++-.
T Consensus 304 ~lG~GgG~~skTi~~ 318 (369)
T COG1332 304 HLGFGGGWRSKTIGI 318 (369)
T ss_pred EEecccceeeeeeee
Confidence 799999999776543
No 11
>PRK01631 hypothetical protein; Provisional
Probab=32.94 E-value=24 Score=26.87 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=15.4
Q ss_pred CCCCchhhhhhhccccce
Q 022651 37 HLPTTPLSAVSSNVRTNI 54 (294)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (294)
.|+.+||.+||.++++.|
T Consensus 30 ~LR~eYl~~fR~~~~~~L 47 (76)
T PRK01631 30 MLRQNYTQTFRGSLDSIL 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999933
No 12
>PRK02539 hypothetical protein; Provisional
Probab=30.30 E-value=26 Score=27.23 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=19.8
Q ss_pred CCCCchhhhhhhcccc---ceeccCCCCCc
Q 022651 37 HLPTTPLSAVSSNVRT---NIVMNNNVVDP 63 (294)
Q Consensus 37 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 63 (294)
.|+.+||.+|+.+++. ||.+-...|+.
T Consensus 31 ~LR~eYl~~fR~~~~~~L~~i~ivD~~G~d 60 (85)
T PRK02539 31 KLREEYIEGYRRSVRHHIEGIKIVDEEGND 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccceEECCCCCC
Confidence 5788999999999999 55555444433
No 13
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=25.99 E-value=35 Score=28.19 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=10.4
Q ss_pred CCcchHHHHHHhh
Q 022651 224 GGGYYDVFLKKYQ 236 (294)
Q Consensus 224 GgGYYDRfL~~~~ 236 (294)
-+.||||||..+.
T Consensus 106 ~~~FY~rFF~lv~ 118 (121)
T PF10001_consen 106 DGDFYDRFFQLVE 118 (121)
T ss_pred chhHHHHHHHHHH
Confidence 3689999998764
No 14
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.96 E-value=26 Score=31.12 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCCcEEEEeceeEeCCCCeeccCCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccC
Q 022651 202 EPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDE 261 (294)
Q Consensus 202 ~~iDLiIVPglAFD~~G~RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~ 261 (294)
...|.||+||........+.=.--|+.++.+..... ...+++|+|+-.|++.+
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~PvlGiC~G~q~l~~ 92 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLA-------AGRPFLGICVGMQLLFE 92 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHh-------CCCcEEEECHHHHHHhh
Confidence 467999999965432211111112444444443211 23468999999998765
No 15
>TIGR01899 cas_TM1807_csm5 CRISPR-associated RAMP protein, Csm5 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.
Probab=23.98 E-value=30 Score=33.84 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.3
Q ss_pred CeeccCCcchHHHHH
Q 022651 219 GRLGRGGGYYDVFLK 233 (294)
Q Consensus 219 ~RLG~GgGYYDRfL~ 233 (294)
-|||+|+||+-.++.
T Consensus 299 ~~iG~g~G~~s~t~~ 313 (365)
T TIGR01899 299 LHIGWGGGLRSKTIG 313 (365)
T ss_pred EEeecccceeeeeeE
Confidence 599999999976653
No 16
>PRK01546 hypothetical protein; Provisional
Probab=22.82 E-value=43 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.6
Q ss_pred CCCCchhhhhhhccccce
Q 022651 37 HLPTTPLSAVSSNVRTNI 54 (294)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (294)
.|+.+||.+||.+++..|
T Consensus 32 ~LR~eYl~~fR~~~~~~L 49 (79)
T PRK01546 32 SLREQYLKGFRQNMLNEL 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999944
No 17
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=20.44 E-value=3.2e+02 Score=24.85 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHh
Q 022651 84 LKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILS 138 (294)
Q Consensus 84 R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~ 138 (294)
|+.|.++++...++.+...-.+ ..-+.+..+.+|+|+.. .|-.+..++..+-+
T Consensus 62 ~npl~~~d~~~lD~l~~~q~~a-~~~~~~~g~~vFVSfSM-P~~sLk~Ll~qa~~ 114 (212)
T PRK13730 62 ENPLQRSDNHFLDELVRKQQAS-QDGKPRQGALYFVSFSI-PEEGLKRMLGETRH 114 (212)
T ss_pred cCCCCchhHHHHHHHHHHHHHh-hccCCCCceEEEEEcCC-CHHHHHHHHHHHHH
Confidence 3457777766666555544322 23345566777777765 46677888887766
No 18
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=20.18 E-value=3.2e+02 Score=21.92 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcCcccc
Q 022651 65 QLEAIFQKKRSLRSKIRKDLKN---MDPIQRSQEDTAVQDIVLESSWFK 110 (294)
Q Consensus 65 ~~~~~~~~K~~LRk~~~~~R~~---ls~~~r~~~s~~I~~~L~~~~~~~ 110 (294)
.+.-+.+.|+.-|+.-++.|+. -||.++...... .+..+|.|+
T Consensus 10 kLarm~Ekkk~rR~~Hk~NRkeRGhKSPSEr~Rs~lr---lf~~LPf~~ 55 (103)
T PF03263_consen 10 KLARMVEKKKQRRRSHKKNRKERGHKSPSERARSELR---LFRFLPFYQ 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHH---HHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCCCHHHHHHHHHH---HHHhCCccc
Confidence 3556777788888888877765 567776654444 344445554
Done!