Query 022651
Match_columns 294
No_of_seqs 220 out of 1146
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy3_A 5-formyltetrahydrofolat 100.0 4.7E-56 1.6E-60 394.2 21.1 196 66-282 3-201 (203)
2 2jcb_A 5-formyltetrahydrofolat 100.0 1.1E-54 3.7E-59 385.1 16.4 187 68-283 8-194 (200)
3 1ydm_A Hypothetical protein YQ 100.0 5.2E-55 1.8E-59 383.0 14.2 186 72-286 1-186 (187)
4 1sou_A 5,10-methenyltetrahydro 100.0 2.6E-53 8.8E-58 374.5 17.4 183 73-289 3-185 (194)
5 1wkc_A HB8 TT1367 protein; str 100.0 5.8E-51 2E-55 356.8 16.7 173 73-288 3-175 (184)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 6.2E-47 2.1E-51 332.7 15.4 161 72-280 27-189 (189)
7 3cdk_A Succinyl-COA:3-ketoacid 52.5 26 0.00089 30.7 6.2 65 202-278 150-218 (241)
8 3rrl_A Succinyl-COA:3-ketoacid 43.1 42 0.0015 29.4 6.1 68 201-280 149-220 (235)
9 1k6d_A Acetate COA-transferase 37.9 35 0.0012 29.3 4.6 66 202-279 147-216 (220)
10 2hep_A UPF0291 protein YNZC; S 29.3 6.2 0.00021 29.6 -1.5 18 37-54 32-49 (85)
No 1
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=4.7e-56 Score=394.23 Aligned_cols=196 Identities=30% Similarity=0.539 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCC
Q 022651 66 LEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNG 145 (294)
Q Consensus 66 ~~~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~ 145 (294)
|+++...|++||++++++|++|+++++..+|++|+++|++++.|+++++|++|+|++ +||||.+|++.+|+
T Consensus 3 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------- 73 (203)
T 3hy3_A 3 AAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------- 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH-------
Confidence 667889999999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred CCCcEEEeeeEecCCCceEEEEcCCCc---ccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeec
Q 022651 146 QMRKKLYVPRVEDKNSNMRMLKISAVK---DLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLG 222 (294)
Q Consensus 146 ~~GK~V~vP~v~~~~~~m~f~~~~~~~---~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG 222 (294)
.||+|+||++.+.+..|.|+.|.+++ .|.+|.|||+||.... ...+.+ ....+|||||||||||++|+|||
T Consensus 74 -~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~----~~~~~~-~~~~~DlvlVP~vaFD~~G~RLG 147 (203)
T 3hy3_A 74 -RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGD----VREEAL-STGGLDLIFMPGLGFDKHGNRLG 147 (203)
T ss_dssp -TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTC----CCCBGG-GTTCCSEEEECCSEECTTCCEEC
T ss_pred -CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCcc----cccccc-CccCCCEEEeCCeEECCCCceec
Confidence 89999999998655579999999864 5789999999997421 111112 34579999999999999999999
Q ss_pred cCCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCce
Q 022651 223 RGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGF 282 (294)
Q Consensus 223 ~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gv 282 (294)
||||||||||+.++.. .+.++.+|||||++|++++ ||+|+||+|||+||||+|+
T Consensus 148 ~GgGyYDR~L~~~~~~----~~~~~~~igla~~~Q~~~~--lP~e~hDi~ld~iiTe~~~ 201 (203)
T 3hy3_A 148 RGKGYYDAYLKRCLQH----QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSS 201 (203)
T ss_dssp SSSCHHHHHHHHHTTT----CSSCCEEEEECCGGGBCSC--CCCC--CCCCSEEECC---
T ss_pred CCCchHHHHHHHhhhh----cCCCCeEEEEecHHhccCC--CCCCcccccCCEEEeCCCc
Confidence 9999999999987531 1345778999999999999 9999999999999999986
No 2
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-54 Score=385.14 Aligned_cols=187 Identities=27% Similarity=0.496 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCC
Q 022651 68 AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQM 147 (294)
Q Consensus 68 ~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~ 147 (294)
.+.+.|++||++++++|++|+++++..+|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++.+|+ .
T Consensus 8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------~ 77 (200)
T 2jcb_A 8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK--------E 77 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH--------T
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH--------C
Confidence 4788999999999999999999999999999999999999999999999999998 69999999999999 8
Q ss_pred CcEEEeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcc
Q 022651 148 RKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGY 227 (294)
Q Consensus 148 GK~V~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGY 227 (294)
||+|+||++...+..|.|+.|++.++|++|.|||+||.... ... .+...+|||||||||||++|+||||||||
T Consensus 78 gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~------~~~-~~~~~iDlvlVP~vAfD~~G~RLG~GgGy 150 (200)
T 2jcb_A 78 GKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPAL------TEE-VNADEIDLQIVPGVAYTERGERIGYGGGY 150 (200)
T ss_dssp TCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGG------CEE-CCGGGCSEEECCCSEECTTSCEECSSSCH
T ss_pred CCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCcc------ccc-CCccCCCEEEECCeEECCCCCeeccCCch
Confidence 99999999976555799999999899999999999996421 001 13457899999999999999999999999
Q ss_pred hHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCceE
Q 022651 228 YDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283 (294)
Q Consensus 228 YDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gvi 283 (294)
|||||+.++ ..+|||+|++|++++ ||+|+||+|||+||||+|++
T Consensus 151 YDR~La~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~ 194 (200)
T 2jcb_A 151 YDRYLVHYK----------GKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTM 194 (200)
T ss_dssp HHHHTTTCC----------SEEEEECCGGGBCSC--CCCCTTCCCCSEEEETTEEE
T ss_pred HHHHHhhcC----------CCEEEEEehhhccCC--CCCCccCCcCCEEEECCeEE
Confidence 999998753 257999999999999 99999999999999999998
No 3
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=5.2e-55 Score=382.98 Aligned_cols=186 Identities=26% Similarity=0.435 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcEE
Q 022651 72 KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKL 151 (294)
Q Consensus 72 ~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~V 151 (294)
.|++||++++++|++|+++++..+|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++.+|+ .||+|
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~--------~gk~v 70 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE--------EGKQV 70 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH--------TTCEE
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH--------CCCEE
Confidence 388999999999999999999999999999999999999999999999998 69999999999999 89999
Q ss_pred EeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchHHH
Q 022651 152 YVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVF 231 (294)
Q Consensus 152 ~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYDRf 231 (294)
+||++...+..|.|+.|++.++|++|.|||+||.... ... .+...+|||||||||||++|+||||||||||||
T Consensus 71 ~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~------~~~-~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR~ 143 (187)
T 1ydm_A 71 CIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEK------TKE-VNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRY 143 (187)
T ss_dssp EEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--C------CCC-CCGGGCCEEECCCSEEETTSCEECCSCCSTTTG
T ss_pred EEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCcc------ccc-CCccCCCEEEeCCeEECCCCCcccCCccHHHHH
Confidence 9999864344699999999889999999999997421 001 123578999999999999999999999999999
Q ss_pred HHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCceEecC
Q 022651 232 LKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPIS 286 (294)
Q Consensus 232 L~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gvi~~~ 286 (294)
|+.++ ..+||++|++|++++ ||+|+||+|||+||||++++++.
T Consensus 144 L~~~~----------~~~igla~~~Q~~~~--lP~e~hD~~ld~iiTe~~~~~~~ 186 (187)
T 1ydm_A 144 LSEYE----------GKTVSLLLECQLFAH--VPRLPHDIPVHKLITEDRIISCF 186 (187)
T ss_dssp GGTCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEECSSCEEECC
T ss_pred HHhCC----------CCEEEEEeHHHhcCC--CCCccccCcCCEEEECCcEEecc
Confidence 98753 257999999999998 99999999999999999999875
No 4
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=2.6e-53 Score=374.55 Aligned_cols=183 Identities=30% Similarity=0.507 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcEEE
Q 022651 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLY 152 (294)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~V~ 152 (294)
|++||++++++|++++++++..+|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++.+|+ . |+|+
T Consensus 3 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~--------~-k~v~ 71 (194)
T 1sou_A 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK--------E-KELI 71 (194)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH--------H-SEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH--------c-CCEE
Confidence 89999999999999999999999999999999999999999999999998 69999999999998 8 9999
Q ss_pred eeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchHHHH
Q 022651 153 VPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFL 232 (294)
Q Consensus 153 vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYDRfL 232 (294)
||++ . +..|.|+.|++.++|++|.|||+||... .. .....+|||||||||||++|+|||||||||||||
T Consensus 72 lP~~-~-~~~m~f~~~~~~~~L~~g~~GI~EP~~~--------~~-~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~L 140 (194)
T 1sou_A 72 LPKV-E-GNEISLYRVHSPACLGVGAFGIMEPVEG--------ER-VNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLL 140 (194)
T ss_dssp EEEE-S-SSSEEEEEESSSCCCEECSSSCEECCSS--------EE-ECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHHH
T ss_pred EEEe-c-CCeeEEEEECCCCccCCCCCCCCCCCcc--------cc-CCCCCCCEEEECCeEECCCCceeccCCcHHHHHH
Confidence 9998 3 3469999999989999999999999630 01 1235789999999999999999999999999999
Q ss_pred HHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCceEecCCcc
Q 022651 233 KKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVA 289 (294)
Q Consensus 233 ~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gvi~~~~~~ 289 (294)
+.++ +.+||+||++|++++ ||+|+||+|||+||||++++++....
T Consensus 141 ~~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~~~~~~~ 185 (194)
T 1sou_A 141 KRVK----------GLKVGVAYSFQVFER--LPRDAWDIPVDVLVTEKNVRRLRDGR 185 (194)
T ss_dssp HHCC----------SEEEEECCGGGBCSC--CCCCSCCCCCSEEECSSCEEESCCCC
T ss_pred HhcC----------CCEEEEEchHhccCC--CCCCcccccCCEEEECCeEEEecCCC
Confidence 9763 357999999999998 99999999999999999999987543
No 5
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=5.8e-51 Score=356.82 Aligned_cols=173 Identities=29% Similarity=0.497 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCcEEE
Q 022651 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLY 152 (294)
Q Consensus 73 K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK~V~ 152 (294)
|++||++++++|++++.++ .|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++ |+ . |+|+
T Consensus 3 K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~--------~-k~v~ 66 (184)
T 1wkc_A 3 KAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY--------P-ARYY 66 (184)
T ss_dssp HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS--------C-CEEE
T ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh--------c-CCEE
Confidence 8999999999999999987 7889999999999999999999999998 6999999999 76 8 9999
Q ss_pred eeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchHHHH
Q 022651 153 VPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFL 232 (294)
Q Consensus 153 vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYDRfL 232 (294)
||++.++ .|.|+.|+ +|.+|.|||+|| ... . .....+|||||||||||++|+|||||||||||||
T Consensus 67 lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~--------~-~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~L 131 (184)
T 1wkc_A 67 LPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP--------P-EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFL 131 (184)
T ss_dssp EEEEETT--EEEEEESC---CBC-------CB-CSC--------C-BCGGGCSEEEECCSEEETTSCEECCSSCHHHHHH
T ss_pred EeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc--------c-CCCCCCCEEEECcEEECCCCCEeeCCccHHHHHH
Confidence 9998644 69999998 899999999999 321 0 1235789999999999999999999999999999
Q ss_pred HHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCCceEecCCc
Q 022651 233 KKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPV 288 (294)
Q Consensus 233 ~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gvi~~~~~ 288 (294)
+.++ +.+||++|++|++++ ||+|+||++||+||||+++++++..
T Consensus 132 ~~~~----------~~~igl~~~~Q~~~~--lp~e~hD~~ld~iiT~~~~~~~~~~ 175 (184)
T 1wkc_A 132 KEVR----------AATVGVVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKRP 175 (184)
T ss_dssp HHCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEEETTEEEECCCC
T ss_pred HhcC----------CCEEEEEchhhccCC--CCCccccCccCEEEECCEEEEcCCC
Confidence 9763 357999999999999 9999999999999999999999765
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=6.2e-47 Score=332.71 Aligned_cols=161 Identities=23% Similarity=0.410 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcccc-CCCeEEEEecCCCCCCCChHHHHHHHHhcCCCCCCCCCc-
Q 022651 72 KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFK-ASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRK- 149 (294)
Q Consensus 72 ~K~~LRk~~~~~R~~ls~~~r~~~s~~I~~~L~~~~~~~-~a~~V~~Y~p~~~~~Evdt~~Li~~al~~~~~~~~~~GK- 149 (294)
.|++||++++++|++++++++..+|.+|+++|++++.|+ ++++|++|+|++ +|+||.+|++.+|+ .||
T Consensus 27 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------~gk~ 96 (189)
T 1sbq_A 27 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK--------INQI 96 (189)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH--------HTTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH--------cCCC
Confidence 499999999999999999999999999999999999999 999999999998 69999999999998 899
Q ss_pred EEEeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchH
Q 022651 150 KLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYD 229 (294)
Q Consensus 150 ~V~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDLiIVPglAFD~~G~RLG~GgGYYD 229 (294)
+|+||++..+ ..|.|+.|++. |. ....+|||||||||||++|+||||||||||
T Consensus 97 ~v~lP~~~~~-~~m~f~~~~~~------------~~--------------~~~~iDlvlVP~vAfD~~G~RLG~GgGyYD 149 (189)
T 1sbq_A 97 RAVYPKVISD-TEIIFIDQETN------------TF--------------EPNQIDCFLIPLVGFNKDNYRLGFGKGYYD 149 (189)
T ss_dssp EEEEEEECSS-SCEEEECTTCC------------EE--------------CGGGCCEEEEECSEECTTCCEECCSSCHHH
T ss_pred eEEEeEEccC-CceEEEEeCCC------------CC--------------CcccCCEEEECceEECCCCCEeecCCchHH
Confidence 9999999644 45999998754 21 123579999999999999999999999999
Q ss_pred HHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCcccCCEEEeCC
Q 022651 230 VFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPR 280 (294)
Q Consensus 230 RfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~ 280 (294)
|||+.++. ++.+|||+|++|+++ ||+|+||+|||+||||+
T Consensus 150 R~La~~~~--------~~~~igla~~~Q~v~---lP~e~hDiplD~IiTe~ 189 (189)
T 1sbq_A 150 RYLMQLTR--------QQPKIGIAYSFQKGD---FLADPWDVQLDLIINDE 189 (189)
T ss_dssp HHGGGCCS--------CCCEEEEECGGGBCC---CCCCTTSCCCSEEEECC
T ss_pred HHHHhcCC--------CCCEEEEechHheeC---CCCCcccCcCCEEEcCC
Confidence 99997632 356899999999987 99999999999999995
No 7
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=52.54 E-value=26 Score=30.71 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=44.5
Q ss_pred CCCcEEEEeceeEeCCCC-eeccCCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCccc---CCEEE
Q 022651 202 EPVDLLILPGLAFDRSGG-RLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVP---VDALV 277 (294)
Q Consensus 202 ~~iDLiIVPglAFD~~G~-RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDip---lD~II 277 (294)
..+|+.||=+-.-|++|| .+|...++||..++...+ .+|.- -.++++.+.++.+.-.+| ||+||
T Consensus 150 l~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk----------~VIve--Vn~~vp~g~l~p~~v~ipg~~VD~VV 217 (241)
T 3cdk_A 150 ITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK----------ITIAE--AEEIVEAGELDPDHIHTPGIYVQHVV 217 (241)
T ss_dssp CCEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE----------EEEEE--EEEEECTTSSCTTTCSBCGGGCSEEE
T ss_pred CCCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC----------EEEEE--EeCCCCccccCCceEEeChHHeEEEE
Confidence 468999999999999998 787788899977665321 23332 233455433555555664 89998
Q ss_pred e
Q 022651 278 S 278 (294)
Q Consensus 278 T 278 (294)
-
T Consensus 218 ~ 218 (241)
T 3cdk_A 218 L 218 (241)
T ss_dssp E
T ss_pred E
Confidence 6
No 8
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=43.12 E-value=42 Score=29.35 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=46.1
Q ss_pred CCCCcEEEEeceeEeCCCCee-ccCCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCccc---CCEE
Q 022651 201 SEPVDLLILPGLAFDRSGGRL-GRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVP---VDAL 276 (294)
Q Consensus 201 ~~~iDLiIVPglAFD~~G~RL-G~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDip---lD~I 276 (294)
...+|+.||-+-..|++||=. +...++|+..++...+ .+ ++=-.++++.+.++.+.-.+| ||+|
T Consensus 149 a~~~DvAli~a~~aD~~GN~~~~~~~~~~~~~~a~aA~----------~v--Iveve~iv~~g~l~p~~v~ipg~~VD~V 216 (235)
T 3rrl_A 149 AITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAK----------IC--VAEVEEIVPAGELDPDEIHLPGIYVQHI 216 (235)
T ss_dssp CCCEEEEEEECSEEETTCCEECCGGGCTTHHHHHHTEE----------EE--EEEESEEECTTSSCTTTCSBCGGGCSEE
T ss_pred CCCCeEEEEEeeecCCCceEEEecCcccccHHHHHhcC----------EE--EEEEeeccccCccCCceEEeChHHeEEE
Confidence 456899999999999999654 4445688987765321 22 333344566544766666777 9999
Q ss_pred EeCC
Q 022651 277 VSPR 280 (294)
Q Consensus 277 ITe~ 280 (294)
|--+
T Consensus 217 V~~~ 220 (235)
T 3rrl_A 217 YKGE 220 (235)
T ss_dssp EECS
T ss_pred EECC
Confidence 8643
No 9
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=37.92 E-value=35 Score=29.30 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=44.0
Q ss_pred CCCcEEEEeceeEeCCCC-eeccCCcchHHHHHHhhhhHhhhhccCceEEEEEcccccccCCCCCCCCCccc---CCEEE
Q 022651 202 EPVDLLILPGLAFDRSGG-RLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVP---VDALV 277 (294)
Q Consensus 202 ~~iDLiIVPglAFD~~G~-RLG~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDip---lD~II 277 (294)
..+|+.||=+-.-|++|| .+|...++||..+++..+ .+|.- -.++++.+.++.+.-.+| ||+||
T Consensus 147 l~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~----------~VIve--Vn~~vp~~~l~p~~v~ipg~~VD~VV 214 (220)
T 1k6d_A 147 LRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD----------ITLVE--PDELVETGELQPDHIVTPGAVIDHII 214 (220)
T ss_dssp CCEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE----------EEEEE--EEEEECTTCSCGGGCCBCGGGCCEEE
T ss_pred CCCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC----------EEEEE--EccccCccccCCceEEeChHHeEEEE
Confidence 468999999999999998 777778999999765421 23332 233444333544445554 78888
Q ss_pred eC
Q 022651 278 SP 279 (294)
Q Consensus 278 Te 279 (294)
-.
T Consensus 215 ~~ 216 (220)
T 1k6d_A 215 VS 216 (220)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 10
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=29.25 E-value=6.2 Score=29.60 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=9.9
Q ss_pred CCCCchhhhhhhccccce
Q 022651 37 HLPTTPLSAVSSNVRTNI 54 (294)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (294)
.|+.+||.+|+++|+..|
T Consensus 32 ~LR~eYl~~fR~~~r~~L 49 (85)
T 2hep_A 32 KLRQEYLKGFRSSMKNTL 49 (85)
T ss_dssp HHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999944
Done!