RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022651
(294 letters)
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 191 bits (488), Expect = 5e-61
Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 24/220 (10%)
Query: 67 EAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLRE 126
A+ KRSLR ++++ L+ M +R ++ + V+ S ++ S+ I ++S E
Sbjct: 4 AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--E 61
Query: 127 VDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD---LVANSMNILE 183
++T I+ +I Q K ++PR ++++M M++I + ++ L S NI +
Sbjct: 62 IETEEIIKDIF--------QRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQ 113
Query: 184 PSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQK 243
P +G+ E+ + DL+ +PGL FD+ G RLGRG GYYD +LK+ + +
Sbjct: 114 PG----EGDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQ----HQ 164
Query: 244 WKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
+P +AL + Q+ + +PV D+ VD ++
Sbjct: 165 EVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSST 202
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 188 bits (480), Expect = 4e-60
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 29/211 (13%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
K LR K + L + Q+ + + ++ + I IS E+ T +
Sbjct: 2 KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRGL--EIPTRPV 59
Query: 133 VSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGN 192
+ + + K++ +P+ M+ L +LEP
Sbjct: 60 IEQAW--------EEGKQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEP-----VIE 106
Query: 193 QCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVAL 252
+ ++V +DL+I+PG+ FD +G R+G GGGYYD +L +Y + V+L
Sbjct: 107 KTKEV--NPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEY----------EGKTVSL 154
Query: 253 LYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
L QL +P P+D+PV L++ I
Sbjct: 155 LLECQLFAH--VPRLPHDIPVHKLITEDRII 183
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 187 bits (478), Expect = 1e-59
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 64 HQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCAS 123
H + ++K LR +I + + ++ + + + + E + ++ I +S +
Sbjct: 4 HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSMEN 63
Query: 124 LREVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILE 183
EV+T I+ + + K++ VP+ + M +IS L MN+ E
Sbjct: 64 --EVNTYPIIEKAW--------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLRE 113
Query: 184 PSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQK 243
P E+V ++ +DL I+PG+A+ G R+G GGGYYD +L Y
Sbjct: 114 P-----IPALTEEV--NADEIDLQIVPGVAYTERGERIGYGGGYYDRYLVHY-------- 158
Query: 244 WKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
+ ++L YS Q+V+ IPV P+D V+ +++ +G +
Sbjct: 159 --KGKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTM 194
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Aquifex aeolicus} SCOP:
c.124.1.6
Length = 194
Score = 163 bits (416), Expect = 3e-50
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 34/211 (16%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
K LR K+ N+ +R + V + FK S+ + Y EVD + +
Sbjct: 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIKG--EVDLTPL 60
Query: 133 VSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGN 192
E+L K+L +P+VE + + ++ + L + I+EP
Sbjct: 61 FPEVLKE---------KELILPKVEGNE--ISLYRVHSPACLGVGAFGIMEPV------- 102
Query: 193 QCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVAL 252
E E VD + +PG+AFD G RLG G GYYD LK+ + L V +
Sbjct: 103 --EGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRV----------KGLKVGV 150
Query: 253 LYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
YS Q+ + +P +D+PVD LV+ +
Sbjct: 151 AYSFQVFER--LPRDAWDIPVDVLVTEKNVR 179
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
genomics/proteomi initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.124.1.6
Length = 184
Score = 156 bits (397), Expect = 1e-47
Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 43/215 (20%)
Query: 73 KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
K LR + R + +D S+ AV +L + R+I Y E++ +
Sbjct: 3 KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLPH--ELNLLPL 57
Query: 133 VSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGN 192
+ + Y+P+V K L + L +LEP+
Sbjct: 58 ME-----------AYPARYYLPKVAGKG-----LTVHPFGPLAPGPFGLLEPT------- 94
Query: 193 QCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVAL 252
DL+++PGLAFDR G RLG G G+YD FLK+ + V +
Sbjct: 95 --TPPEDPRVL-DLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATVGV 141
Query: 253 LYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISP 287
+ L +P P+DVPVD L + G +
Sbjct: 142 VPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKR 174
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 133 bits (336), Expect = 2e-38
Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 48/212 (22%)
Query: 69 IFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLES-SWFKASRNICAYISCASLREV 127
K +LR +I + + I++S D + ++ + + I Y + EV
Sbjct: 24 GHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKN--EV 81
Query: 128 DTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLL 187
E L + + P+V ++ + + N EP+ +
Sbjct: 82 TFVDFFFEFLKIN-------QIRAVYPKVI-SDTEI---------IFIDQETNTFEPNQI 124
Query: 188 DSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQP 247
D ++P + F++ RLG G GYYD +L + +Q
Sbjct: 125 D-----------------CFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT--------RQQ 159
Query: 248 LLVALLYSLQLVDEESIPVTPYDVPVDALVSP 279
+ + YS Q D P+DV +D +++
Sbjct: 160 PKIGIAYSFQKGD---FLADPWDVQLDLIIND 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 7e-04
Identities = 57/292 (19%), Positives = 84/292 (28%), Gaps = 119/292 (40%)
Query: 3 AIASSQNCSGQSMFRHCKTTARL-----IRNAKEIAPVTHLPT--------------TPL 43
AIA + S +S F + + +R E P T LP +P+
Sbjct: 282 AIAETD--SWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 44 SAVS--------SNVR-TN----------IVMNN---NVV---DPHQLEAIFQKKRSLRS 78
++S V TN I + N N+V P L L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-------LNL 391
Query: 79 KIRKDLKNMDPIQR----SQEDTAVQDIVLE-SSWFKASRNICAYISCASLREVDTSRIV 133
+RK Q S+ + L +S F + A + I
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-----SHLLVPA------SDLIN 440
Query: 134 SEILSNQTDGNGQMRKKLYVPRVED--KNSNMRMLKISAVKDLVANSMNILEPSLLDSDG 191
+++ N N K + +P V D S++R+L S + +V
Sbjct: 441 KDLVKNNVSFNA---KDIQIP-VYDTFDGSDLRVLSGSISERIVD--------------- 481
Query: 192 NQCEDVMQASEPVD---------LLIL---PGLAFDRSG-GRL------GRG 224
PV IL PG A SG G L G G
Sbjct: 482 ------CIIRLPVKWETTTQFKATHILDFGPGGA---SGLGVLTHRNKDGTG 524
Score = 37.0 bits (85), Expect = 0.009
Identities = 45/345 (13%), Positives = 84/345 (24%), Gaps = 144/345 (41%)
Query: 43 LSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDI 102
L+ + + N++ H L A L + L +++
Sbjct: 84 LNLCLTEFENCYLEGNDI---HALAA------KLLQENDTTL------------VKTKEL 122
Query: 103 VLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGN--------GQMRKKLYVP 154
+ + + + S + +GN GQ Y
Sbjct: 123 IK-----------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 155 RVEDKNSNMRML-KISA--VKDLVANSMNILEPSLLDSDGNQCE-------DVMQ----- 199
E +R L + V DL+ S L L E ++++
Sbjct: 172 --E-----LRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLNILEWLENP 222
Query: 200 ---------ASEPVDL-LI-L----------------PGLAFDRSGGRLGRGGG------ 226
S P+ LI + PG G G G
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 227 ---------YYDVFLKKYQKL------AQE------------QKWKQ-------PLL-VA 251
++ K L E + + P+L ++
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 252 LLYSLQLVDEESIPVTPYDVPVD-----ALV-SPRGFI----PIS 286
L Q+ ++ + T +P +LV + + P S
Sbjct: 343 NLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Score = 31.2 bits (70), Expect = 0.47
Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 81/205 (39%)
Query: 52 TNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNM------DPIQRSQEDTAVQDIVLE 105
+IV+NN P L F ++ R IR++ M D ++++ +
Sbjct: 1662 LDIVINN----PVNLTIHFGGEKGKR--IRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 106 SSWFKASRNIC---AY-------ISCASLREVDTSRIVSEILSNQTDGNGQMRKKLYVPR 155
S F++ + + + + A+ + ++ K +P
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFED--------------------LKSKGLIPA 1755
Query: 156 V---------EDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDL 206
E +A L + + DVM V++
Sbjct: 1756 DATFAGHSLGE----------YAA---LASLA-----------------DVMSIESLVEV 1785
Query: 207 LILPGLAFDRSGGRLGRGGGYYDVF 231
+ G+ + R G Y +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMI 1810
Score = 30.4 bits (68), Expect = 0.75
Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 71/186 (38%)
Query: 140 QTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQ 199
Q G M LY K S A +D V N + D+ G D++
Sbjct: 1627 QEQG---MGMDLY------KTS-------KAAQD-VWNRA---DNHFKDTYGFSILDIVI 1666
Query: 200 ASEPVDLLILPGLAFDRSGGRLGRGGGY----YDVFLK---KYQKLAQEQK-------WK 245
+ PV+L I F G+ R Y ++ + K +K+ +E ++
Sbjct: 1667 -NNPVNLTIH----FGGEKGKRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 246 ------------QPLLVALLYS-LQLVDEESIPVTPYDVPVD------------ALVSPR 280
QP L + + + + + + +P D AL S
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGL------IPADATFAGHSLGEYAALASLA 1774
Query: 281 GFIPIS 286
+ I
Sbjct: 1775 DVMSIE 1780
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 36/244 (14%), Positives = 85/244 (34%), Gaps = 57/244 (23%)
Query: 35 VTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQ 94
+ P S +S +I+M+ + V +F +L SK Q
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVS--GTLRLFW---TLLSK-----------QEEM 78
Query: 95 EDTAVQDIV------LESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMR 148
V++++ L S R + T + + ++ + Q+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQ----------PSMMTRMYIEQR--DRLYNDNQVF 126
Query: 149 KKLYVPRVEDKNSNMR--MLKISAVKDLVANSM-----NILEPSLLDSDGNQCE------ 195
K V R++ +R +L++ K+++ + + + + S QC+
Sbjct: 127 AKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 196 --DVMQASEPVDLL-ILPGLAFDRSGGRLGRGGGYYDVFLK------KYQKLAQEQKWKQ 246
++ + P +L +L L + R ++ L+ + ++L + + ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 247 PLLV 250
LLV
Sbjct: 246 CLLV 249
Score = 38.3 bits (88), Expect = 0.003
Identities = 39/274 (14%), Positives = 86/274 (31%), Gaps = 60/274 (21%)
Query: 16 FRHCKTTARLIRNAKEI---------APVTHLPTTPLSAVSSNVRTNIVMNN-------- 58
++C + ++ +++ + H L S ++ +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 59 ---NVVDPHQLEAIFQKKRSLRSKI----RKDLKNMDPIQRSQEDTAVQDIVLESSWF-- 109
NV + A F +L KI R + D + S T + S
Sbjct: 249 VLLNVQNAKAWNA-F----NLSCKILLTTR-FKQVTDFL--SAATTTHISLDHHSMTLTP 300
Query: 110 KASRNICAYISCASLREVDTSRIVSEILSNQTDGNGQMRKKLYVPRVEDKNS---NMRML 166
+++ R D L + R + + D + N + +
Sbjct: 301 DEVKSLLL--KYLDCRPQD--------LPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 167 KISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGG 226
+ ++ +S+N+LEP+ ++ V S + ++L + FD
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVI--------- 400
Query: 227 YYDV--FLKKYQKLAQEQKWKQPLLVALLYSLQL 258
DV + K K + +K + ++ + S+ L
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYL 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.0
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 240 QEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALV 277
++Q K+ L SL+L ++S P + + A +
Sbjct: 18 EKQALKK-----LQASLKLYADDSAPA----LAIKATM 46
Score = 26.5 bits (57), Expect = 9.2
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 11/30 (36%)
Query: 146 QMRK-----KLYVPRVEDKNSNMRMLKISA 170
++K KLY D + L I A
Sbjct: 21 ALKKLQASLKLYAD---D---SAPALAIKA 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 5.7
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 60 VVDPHQL----EAIFQKKRSLRSKIRKDLKNMDPIQRSQED----TAVQDIVLESSWFK 110
+ +L E+I R R + RK L+ +D + E A +D+ W +
Sbjct: 74 IAQADRLTQEPESI----RKWREEQRKRLQELDAASKVMEQEWREKAKKDL---EEWNQ 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,303,874
Number of extensions: 246540
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 21
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)