RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 022651
         (294 letters)



>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 194

 Score = 90.3 bits (223), Expect = 1e-22
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 34/211 (16%)

Query: 73  KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRI 132
           K  LR K+     N+   +R +    V   +     FK S+ +  Y       EVD + +
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 133 VSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGN 192
             E           + K+  +   + + + + + ++ +   L   +  I+EP        
Sbjct: 61  FPE-----------VLKEKELILPKVEGNEISLYRVHSPACLGVGAFGIMEP-------- 101

Query: 193 QCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVAL 252
             E      E VD + +PG+AFD  G RLG G GYYD  L          K  + L V +
Sbjct: 102 -VEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLL----------KRVKGLKVGV 150

Query: 253 LYSLQLVDEESIPVTPYDVPVDALVSPRGFI 283
            YS Q+ +   +P   +D+PVD LV+ +   
Sbjct: 151 AYSFQVFER--LPRDAWDIPVDVLVTEKNVR 179


>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 88.7 bits (219), Expect = 4e-22
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 43/214 (20%)

Query: 72  KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSR 131
            K  LR + R   + +D    S+   AV   +L     +  R+I  Y             
Sbjct: 2   TKAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPL---------- 48

Query: 132 IVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDG 191
                     + N     + Y  R        + L +     L      +          
Sbjct: 49  --------PHELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGL---------- 90

Query: 192 NQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVA 251
            +     +    +DL+++PGLAFDR G RLG G G+YD FLK+           +   V 
Sbjct: 91  LEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATVG 140

Query: 252 LLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPI 285
           ++    L     +P  P+DVPVD L +  G   +
Sbjct: 141 VVPQALLFPA--LPRDPWDVPVDHLATEAGVEAV 172


>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
           homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 164

 Score = 82.2 bits (202), Expect = 9e-20
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 48/208 (23%)

Query: 73  KRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLES-SWFKASRNICAYISCASLREVDTSR 131
           K +LR +I +    +  I++S  D  +   ++   +     + I  Y    +  EV    
Sbjct: 3   KNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKN--EVTFVD 60

Query: 132 IVSEILSNQTDGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDG 191
              E L        ++ +   V      ++ +                            
Sbjct: 61  FFFEFL--------KINQIRAVYPKVISDTEIIF-------------------------- 86

Query: 192 NQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVA 251
              E        +D  ++P + F++   RLG G GYYD +L +          +Q   + 
Sbjct: 87  IDQETNTFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQL--------TRQQPKIG 138

Query: 252 LLYSLQLVDEESIPVTPYDVPVDALVSP 279
           + YS Q  D       P+DV +D +++ 
Sbjct: 139 IAYSFQKGD---FLADPWDVQLDLIIND 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,035,305
Number of extensions: 45371
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 5
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)