BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022652
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
           Complexed With Fad
          Length = 407

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
           +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G  + +
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 86

Query: 122 QFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
               ++ MA +    G  +  F      E        V R  L   + +    +SVQF  
Sbjct: 87  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 146

Query: 179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
            + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ + +Y G+  + GL
Sbjct: 147 RVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 205

Query: 237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTP 280
                      +     G G +   +PVS  + Y+F   + P P
Sbjct: 206 VEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFF--DVPLP 247


>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
           With Fad
 pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
           With Fad And Uric Acid
          Length = 407

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%)

Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
           +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG      LG G D+  
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXG-DIXE 85

Query: 122 QFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPP---------- 171
            F            G  LR   ++D  + +         L+E   ++  P          
Sbjct: 86  TF------------GGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSRAELQREX 133

Query: 172 ------ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS- 223
                 +SVQF   + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ 
Sbjct: 134 LDYWGRDSVQFGKRVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTP 192

Query: 224 EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTP 280
           + +Y G+  + GL           +     G G R    PVS  + Y+F   + P P
Sbjct: 193 QRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFF--DVPLP 247


>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
           2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
 pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
           2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
 pdb|3ALI|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           5-Pyridoxic Acid Bound Form
 pdb|3ALI|B Chain B, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           5-Pyridoxic Acid Bound Form
 pdb|3ALJ|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           Reduced Form
          Length = 379

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72

Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130

Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174


>pdb|3ALK|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           Mutant Y270f
          Length = 379

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72

Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130

Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174


>pdb|3ALL|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           Mutant Y270a
 pdb|3ALL|B Chain B, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           Mutant Y270a
          Length = 379

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72

Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130

Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174


>pdb|3GMC|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
           With Substrate Bound
 pdb|3GMC|B Chain B, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
           With Substrate Bound
          Length = 415

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108

Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 109 -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 166

Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 167 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 210


>pdb|3ALM|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           Mutant C294a
 pdb|3ALM|B Chain B, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
           Mutant C294a
          Length = 379

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72

Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130

Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174


>pdb|3GMB|A Chain A, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
 pdb|3GMB|B Chain B, Crystal Structure Of
           2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
          Length = 415

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108

Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R   R  L + L N+     V  S     
Sbjct: 109 -LQGSHTPPTYETWXHNKSVS-KETFNGLPWRIXTRSHLHDALVNRARALGVDISVNSEA 166

Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 167 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 210


>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
           Biosynthetic Enzyme Rebc
 pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
 pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
 pdb|2R0P|A Chain A, K252c-Soaked Rebc
 pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
           With Reduced Flavin
 pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
           With Reduced Flavin
          Length = 549

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 28/189 (14%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-------GGTSLTLFKN----- 105
           + D++I+G G  G+A A+ L    +G LV+EQ D   T       G  S+ LF+      
Sbjct: 26  ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAK 85

Query: 106 -----GWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRI 160
                GW     L      R    E+  + + + D R          + + E  A+  + 
Sbjct: 86  QIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTR-------ATPEHTPEPDAICPQH 138

Query: 161 LLETLANQLPPESVQFSSELAKIETSGNGV--TILELVNG-TR-IYANIVIGCDGIRSPI 216
            L  L  +   E ++  S L   E   + V  TI +L  G TR ++A  ++ CDG  SP 
Sbjct: 139 WLAPLLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPT 198

Query: 217 AKWIGFSEP 225
            K +G   P
Sbjct: 199 RKALGIDAP 207


>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
           Monooxygenase From Pseudomonas Aeruginosa
          Length = 399

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D++I G GI G   A  L R G   +V+EQA   R    +  L   G  V++A G+ +++
Sbjct: 8   DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEV 67

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVE----RRILLETLANQLPPESVQ 175
             +   ++       DG  LR F +   DA      +     RR++LE +  +   E + 
Sbjct: 68  TRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEML- 126

Query: 176 FSSELAKIE-TSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220
           F + +  ++    + +  + L +G  +   +V+G DGI S + + +
Sbjct: 127 FETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRL 172


>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
          Length = 402

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 23/173 (13%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSL-VIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           DI+I GAGI GL+ A++L + GIG + ++E +  +R  G  + +       L  LG+G  
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65

Query: 119 LRS--------QFLEIKGMAVKSEDGRELRSFGFKDEDASQEV---RAVERRILLETLAN 167
           L +        ++++  G  V SE        G +  +A  +    R   + ILL  +  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSE------PRGVEAGNAYPQYSIHRGELQXILLAAVRE 119

Query: 168 QLPPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSPI 216
           +L  ++V+    + +IE   +G  ++   +G      + A++++G DGI S +
Sbjct: 120 RLGQQAVRTGLGVERIEER-DGRVLIGARDGHGKPQALGADVLVGADGIHSAV 171


>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
           Phzs From Pseudomonas Aeruginosa. Northeast Structural
           Genomics Consortium Target Par240
          Length = 410

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 23/173 (13%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSL-VIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           DI+I GAGI GL+ A++L + GIG + ++E +  +R  G  + +       L  LG+G  
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65

Query: 119 LRS--------QFLEIKGMAVKSEDGRELRSFGFKDEDASQEV---RAVERRILLETLAN 167
           L +        ++++  G  V SE        G +  +A  +    R   + ILL  +  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSE------PRGVEAGNAYPQYSIHRGELQMILLAAVRE 119

Query: 168 QLPPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSPI 216
           +L  ++V+    + +IE   +G  ++   +G      + A++++G DGI S +
Sbjct: 120 RLGQQAVRTGLGVERIEER-DGRVLIGARDGHGKPQALGADVLVGADGIHSAV 171


>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
 pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
 pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
           7-Carboxy-K252c
 pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
           7-Carboxy-K252c
          Length = 549

 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 28/189 (14%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-------GGTSLTLFKN----- 105
           + D++I+G G  G+A A+ L    +G LV++  D   T       G  S+ LF+      
Sbjct: 26  ETDVLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMELFRRWGVAK 85

Query: 106 -----GWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRI 160
                GW     L      R    E+  + + + D R          + + E  A+    
Sbjct: 86  QIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTR-------ATPEHTPEPDAICPAH 138

Query: 161 LLETLANQLPPESVQFSSELAKIETSGNGV--TILELVNG-TR-IYANIVIGCDGIRSPI 216
            L  L  +   E ++  S L   E   + V  TI +L  G TR ++A  ++ CDG  SP 
Sbjct: 139 WLAPLLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPT 198

Query: 217 AKWIGFSEP 225
            K +G   P
Sbjct: 199 RKALGIDAP 207


>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: P15i-A394c Double Mutant
 pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: P15i-A394c Double Mutant
          Length = 453

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           + D+ IVGAGI+GLA A +L++ G+   VIE  D  R GG + T   +G
Sbjct: 5   QRDVAIVGAGISGLAAATALRKAGLSVAVIEARD--RVGGRTWTDTIDG 51


>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
           Arthrobacter Nicotinovorans
 pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
           Arthrobacter Nicotinovorans
 pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
           Arthrobacter Nicotinovorans
          Length = 397

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 10/177 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
           I +VG  I+GL  A+ L+  G+   V E++    +G      F  G  V   L     L 
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSG------FGTGIVVQPELV--HYLL 59

Query: 121 SQFLEIKGMAVKSEDGRELRSF-GFKDEDASQEVRAVERRILLETLANQLPPESVQFSSE 179
            Q +E+  ++V S     + +  G +      + R      +   L     PE    S  
Sbjct: 60  EQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKC 119

Query: 180 LAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGL 236
           L  +      V  +   +GT+  AN VIG DG  S + K +   EP Y G+  +RG+
Sbjct: 120 LVGLSQDSETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGV 175


>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43
          Length = 421

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG 116
            K D++++GAG AG   A  + + G    ++E+    R      +L       LD  G  
Sbjct: 4   EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF-VIGESLLPRCXEHLDEAGFL 62

Query: 117 SDLRSQFLEIKGMAVKSEDGRELRSFGFKDE--DASQEVRAVERRILLETLANQLPPESV 174
             +++Q  + K    K   G+E+  F F D+  +       V R    +TLA++   + V
Sbjct: 63  DAVKAQGFQQK-FGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGV 121

Query: 175 QFSSELAKIETSGNG---VTILELVNGTR--IYANIVIGCDGIRSPIAKWIGFSEP 225
               E+   +    G   VT +E +NG +  I A  +I   G    I +  G  +P
Sbjct: 122 DVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRXFGLDKP 177


>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: A394c Mutant
          Length = 453

 Score = 37.4 bits (85), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           + D+ IVGAG +GLA A +L++ G+   VIE  D  R GG + T   +G
Sbjct: 5   QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWTDTIDG 51


>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
           With Harmine
          Length = 513

 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+V++G GI+GL+ A  L   G+  LV+E  D  R GG + T+
Sbjct: 4   DVVVIGGGISGLSAAKLLTEYGVSVLVLEARD--RVGGRTYTI 44


>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: A394c-A396t-Q431g Triple Mutant
 pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: A394c-A396t-Q431g Triple Mutant
          Length = 453

 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           + D+ IVGAG +GLA A +L++ G+   VIE  D  R GG + T   +G
Sbjct: 5   QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWTDTIDG 51


>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: Wild Type Enzyme
 pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: Wild Type Enzyme
 pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: Wild Type Bound To Putrescine
 pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
           Oxidase: Wild Type Bound To Putrescine
          Length = 453

 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           + D+ IVGAG +GLA A +L++ G+   VIE  D  R GG + T   +G
Sbjct: 5   QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWTDTIDG 51


>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
           Harmine
          Length = 513

 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+V++G GI+GL+ A  L   G+  LV+E  D  R GG + T+
Sbjct: 4   DVVVIGGGISGLSAAKLLTEYGVSVLVLEARD--RVGGRTYTI 44


>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form A
 pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form A
 pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form B
 pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form B
          Length = 527

 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+V++G GI+GL+ A  L   G+  LV+E  D  R GG + T+
Sbjct: 15  DVVVIGGGISGLSAAKLLTEYGVSVLVLEARD--RVGGRTYTI 55


>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
 pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
 pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
 pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
           Substrates And Inhibitors Of Rat Monoamine Oxidase A
          Length = 534

 Score = 36.2 bits (82), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+V++G GI+GLA A  L    I  LV+E  D  R GG + T+
Sbjct: 23  DVVVIGGGISGLAAAKLLSEYKINVLVLEARD--RVGGRTYTV 63


>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
           Angucycline Biosynthesis, Determined To 2.7 A Resolution
          Length = 499

 Score = 35.4 bits (80), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-SLTLFKNGWSVLDALGVGSDL 119
           +++VGAG AGL  A  L+  G+  +V+EQ    RTG +  L        V D  G+    
Sbjct: 15  VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ-RTGESRGLGFTARTMEVFDQRGI---- 69

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRI---LLETLANQLPPESVQF 176
              F  ++        GR +  FG   E A   V+AV +     +LE  A     E ++ 
Sbjct: 70  LPAFGPVETSTQGHFGGRPV-DFGVL-EGAHYGVKAVPQSTTESVLEEWALGRGAELLRG 127

Query: 177 SSELAKIETSGNGVTILELVNGTR-IYANIVIGCDGIRSPIAKWIGFSEP 225
            +  A  +   + V  +E  +G R +    V+GCDG RS + K  GF  P
Sbjct: 128 HTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFP 177


>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
           Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
 pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
           Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
 pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
           Trans-2-Phenylcyclopropyl-1-Amine
 pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
           (-)-Trans- 2-Phenylcyclopropyl-1-Amine
 pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
           Tranylcypromine Derivative (Mc2584, 13b)
 pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
           Tranylcypromine Derivative (Mc2580, 14e)
          Length = 852

 Score = 35.0 bits (79), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 281 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 328


>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
           Recognition
 pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
           Terminal Snail Peptide
          Length = 730

 Score = 35.0 bits (79), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 159 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 206


>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
           Human Histone Lysine Demethylase Lsd1
          Length = 734

 Score = 35.0 bits (79), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 159 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 206


>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
           Nucleosomes By The Human Lsd1 Histone Demethylase
 pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
           By Suicide Inactivation
 pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
           Fad-Tranylcypromine Adduct
          Length = 666

 Score = 35.0 bits (79), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 111 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 158


>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
           Demethylase-1
          Length = 664

 Score = 35.0 bits (79), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 157


>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
          Length = 664

 Score = 35.0 bits (79), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 157


>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
 pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
 pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
 pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
           Pentafluorophenylcyclopropylamine
 pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
           Derivative, S1201
          Length = 662

 Score = 35.0 bits (79), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 157


>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
          Length = 660

 Score = 35.0 bits (79), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T F+ G  V D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVAT-FRKGNYVAD 157


>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
          Hydroxylase With Fad And Aklavinone
 pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
          Hydroxylase With Fad And Aklavinone
 pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
          Hydroxylase With Fad And Aklavinone
          Length = 535

 Score = 34.7 bits (78), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89
          D+++VGAG+ GL+TA+ L R G+  LV+E+
Sbjct: 7  DVLVVGAGLGGLSTAMFLARQGVRVLVVER 36


>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
          Yeast
 pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
          Yeast
 pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
          Yeast
 pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
          Yeast
 pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
          Yeast
 pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
          Yeast
          Length = 513

 Score = 34.7 bits (78), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGG 97
          K+ ++I+GAGIAGL  A +L + GI   LV+E  D  R GG
Sbjct: 8  KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46


>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
 pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
 pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
          Inhibitors
 pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
          Inhibitors
 pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
          Inhibitors
 pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
          Inhibitors
 pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
          Inhibitors
 pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
          Inhibitors
 pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
          Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
          Methylated Spermine
 pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
          Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
          Methylated Spermine
 pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
          Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
          Methylated Spermine
 pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
          Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
          Methylated Spermine
 pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
 pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
 pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
 pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
 pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
          S-n1-acmespermidine
 pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
          S-n1-acmespermidine
 pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
          S-Bz-Mespermidine
 pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
          S-Bz-Mespermidine
 pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
          R-Bz-Mespermidine
 pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
          R-Bz-Mespermidine
          Length = 516

 Score = 34.7 bits (78), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGG 97
          K+ ++I+GAGIAGL  A +L + GI   LV+E  D  R GG
Sbjct: 8  KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46


>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
 pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
          Length = 516

 Score = 34.7 bits (78), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGG 97
          K+ ++I+GAGIAGL  A +L + GI   LV+E  D  R GG
Sbjct: 8  KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46


>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
 pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
 pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
 pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
          Length = 516

 Score = 34.7 bits (78), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGG 97
          K+ ++I+GAGIAGL  A +L + GI   LV+E  D  R GG
Sbjct: 8  KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46


>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
          Yeast
 pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
          Yeast
          Length = 516

 Score = 34.7 bits (78), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGG 97
          K+ ++I+GAGIAGL  A +L + GI   LV+E  D  R GG
Sbjct: 8  KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46


>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
           Aurescens
 pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
           Aurescens
          Length = 482

 Score = 34.3 bits (77), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           D+VIVGAG +GL  A  L++ G+   V+E  D  R GG + T   +G
Sbjct: 9   DVVIVGAGPSGLTAARELKKAGLSVAVLEARD--RVGGRTWTDTIDG 53


>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
           Ananatis
          Length = 501

 Score = 34.3 bits (77), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWS 108
            ++GAG  GLA A+ LQ  GI  L++EQ D  + GG +      G++
Sbjct: 5   TVIGAGFGGLALAIRLQAAGIPVLLLEQRD--KPGGRAYVYEDQGFT 49


>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Peg As Precipitant
 pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Peg As Precipitant
 pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Phosphate As Precipitant
 pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Phosphate As Precipitant
          Length = 390

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D+++VGAG  G+A    L + G+ +L+++  D   T G+
Sbjct: 6  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 44


>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
          Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
 pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
          Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
 pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
          Mutant Of Monomeric Sarcosine Oxidase
 pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
          Mutant Of Monomeric Sarcosine Oxidase
 pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
          Mutant Of Monomeric Sarcosine Oxidase
 pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
          Mutant Of Monomeric Sarcosine Oxidase
          Length = 389

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D+++VGAG  G+A    L + G+ +L+++  D   T G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43


>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor Dimethylglycine
 pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor Dimethylglycine
 pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methytelluro]acetate
 pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methytelluro]acetate
 pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methylseleno]cetate
 pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methylseleno]cetate
 pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
          Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
          Resolution.
 pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
          Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
          Resolution.
 pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
          Msox With Sarcosine
 pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
          Msox With Sarcosine
 pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
 pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
 pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
          Complex
 pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
          Complex
          Length = 389

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D+++VGAG  G+A    L + G+ +L+++  D   T G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43


>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
          Bacillus Sp. Ns- 129
 pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
          Bacillus Sp. Ns- 129
          Length = 386

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D+++VGAG  G+A    L + G+ +L+++  D   T G+
Sbjct: 5  DVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGS 43


>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
          Length = 389

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D+++VGAG  G+A    L + G+ +L+++  D   T G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43


>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
          Sarcosine Oxidase
 pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
          Sarcosine Oxidase
          Length = 389

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D+++VGAG  G+A    L + G+ +L+++  D   T G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43


>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
           Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
           Vulgaris
          Length = 472

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 62  VIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSLTL 102
           VIVG G  GL  AVSL  + GI + V+E AD +  G TS +L
Sbjct: 163 VIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSL 204


>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
           Hyperthermophilic Archaeon Sulfolobus Tokodaii
 pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
           Hyperthermophilic Archaeon Sulfolobus Tokodaii
          Length = 472

 Score = 32.3 bits (72), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 31/151 (20%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD-- 118
           I I+G+GIAGL+  V+L+R G    +I    S R  G S  + K G     A  VGSD  
Sbjct: 2   IYIIGSGIAGLSAGVALRRAGKKVTLI----SKRIDGGSTPIAKGGV----AASVGSDDS 53

Query: 119 --LRSQ--------FLEIKGMAVKSEDGREL----RSFGFK-DEDASQEVRAVERRILLE 163
             L +Q          ++K +   + + + +     S+GF+ +ED   E    +RR+L  
Sbjct: 54  PELHAQDTIRVGDGLCDVKTVNYVTSEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHR 113

Query: 164 TLANQLPPESVQFSSELAKIETSGNGVTILE 194
           T  ++   E   F  +LA+ E    G+ I+E
Sbjct: 114 T--DETGREIFNFLLKLAREE----GIPIIE 138


>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
 pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
 pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
 pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
          Length = 484

 Score = 31.6 bits (70), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 50  AKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWS 108
           A A A++    IVI+GAG  GL  AV L  LG  +  + + +    G +   L +NG++
Sbjct: 1   AIAMAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFT 59


>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
          Bordetella Pertussis. Northeast Structural Genomics
          Target Ber141
 pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
          Bordetella Pertussis. Northeast Structural Genomics
          Target Ber141
          Length = 369

 Score = 31.6 bits (70), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D +++GAG+ GLA A +L   G   LV E A+ + TG +S
Sbjct: 6  DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSS 45


>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma Complexed With Citrate
 pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
           Calloselasma Rhodostoma, Complexed With Three Molecules
           Of O-Aminobenzoate.
 pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
           Rhodostoma In Complex With L-Phenylalanine
 pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
           Rhodostoma In Complex With L-Phenylalanine
 pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
           Rhodostoma In Complex With L-Phenylalanine
 pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
           Rhodostoma In Complex With L-Phenylalanine
          Length = 498

 Score = 31.2 bits (69), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 33  CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92
           CFQ         I  +  KA ++ +   +VIVGAG+AGL+ A  L   G    V+E ++ 
Sbjct: 10  CFQENDYEEFLEIARNGLKATSNPKH--VVIVGAGMAGLSAAYVLAGAGHQVTVLEASE- 66

Query: 93  LRTGGTSLTLFKN---GW 107
            R GG   T ++N   GW
Sbjct: 67  -RPGGRVRT-YRNEEAGW 82


>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
           Venom
 pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
           Venom
          Length = 497

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLF--KNGWSVLDALGVGSD 118
           +VIVGAG++GL+ A  L   G    V+E ++  R GG   T    K GW         ++
Sbjct: 49  VVIVGAGMSGLSAAYVLANAGHQVTVLEASE--RAGGQVKTYRNEKEGWY--------AN 98

Query: 119 LRSQFLEIKGMAVKS---EDGRELRSFGFKDEDASQEVRAVERRI 160
           L    L  K   V+    + G +L  F  ++E+A   ++ + +R+
Sbjct: 99  LGPMRLPEKHRIVREYIRKFGLQLNEFSQENENAWYFIKNIRKRV 143


>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
          Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
          Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
          Ubiquinone Oxidoreductase
 pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
          Ubiquinone Oxidoreductase
          Length = 584

 Score = 30.8 bits (68), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 41 RSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRL 80
          R +  R      E    + D+VIVGAG AGL+ A  L++L
Sbjct: 18 RDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQL 57


>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
 pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
          Length = 367

 Score = 30.8 bits (68), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           D +IVG+G+ G   A  L++L    LVIE+ + +  GG + T
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI--GGNAYT 42


>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
           Complexed With Nad+
 pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
           Complexed With Nad+
          Length = 478

 Score = 30.8 bits (68), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           +  D+VI+G G AG   A+   +LG  +  +E+   L  GGT L +
Sbjct: 4   KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL--GGTCLNV 47


>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
          Streptomyces Sp. X-119-6
          Length = 376

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
          I+IVGAGIAGL     L R G    ++E A++ R GG
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAGHDVTILE-ANANRVGG 82


>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
 pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
           With Fad And Sam
          Length = 689

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 54  ADVRKEDIVIVGAGIAGLATAVSLQRLG 81
           A  R +DI I+G GI    TA++LQR G
Sbjct: 260 AATRCDDIAIIGGGIVSALTALALQRRG 287


>pdb|4AT0|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
          Dehydrogenase From Rhodococcus Jostii Rha1
 pdb|4AT2|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
          Dehydrogenase From Rhodococcus Jostii Rha1 In Complex
          With 4-Androstene-3,17- Dione
          Length = 510

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89
          + D+V+ G GIAG+A ++   R G   LV+E+
Sbjct: 41 EADVVVAGYGIAGVAASIEAARAGADVLVLER 72


>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
           Sulfolobus Solfataricus
 pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
           Sulfolobus Solfataricus
          Length = 466

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91
           +D+VI+GAG  GL  A   + +G+ + +IE  D
Sbjct: 173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD 205


>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
           Oxidase From Zea Mays
 pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
           Oxidase From Zea Mays
 pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
           Oxidase From Zea Mays In Complex With Spermine
 pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
           Oxidase From Zea Mays In Complex With Spermine
 pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
           Oxidase From Zea Mays In Complex With Spermidine
 pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
           Oxidase From Zea Mays In Complex With Spermidine
          Length = 478

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 27/112 (24%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFK--------------NG 106
           +++VGAG++G++ A  L   GI  L+I +A     G    T F               NG
Sbjct: 7   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 66

Query: 107 ------WSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQE 152
                 W ++++     + RS F +     V  EDG      G  DED  Q+
Sbjct: 67  GKMNPIWPIVNSTLKLRNFRSDF-DYLAQNVYKEDG------GVYDEDYVQK 111


>pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb)
          Length = 350

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 104 KNGWSVLDAL--GVGSDLRSQFLEIKGMAVKSEDGRELRSF---------GFKDEDASQE 152
           + G+ V D +  GVG+D+ S  L ++GM+    D   + +F         GF+D+    E
Sbjct: 199 QQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSE 258

Query: 153 VRAVERRILLETLANQLPPESVQFS 177
           ++ +   +L      +L P S+   
Sbjct: 259 LKIIS--VLRLMFPKRLIPASLDLE 281


>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
           Structure Of Polyamine Oxidase
 pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
           Structure Of Polyamine Oxidase
 pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
           Structure Of Polyamine Oxidase
 pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
           Structure Of Polyamine Oxidase
 pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
           Structure Of Polyamine Oxidase
 pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
           Structure Of Polyamine Oxidase
 pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
 pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
 pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
 pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
 pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
 pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
 pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
           Diaminooctane
 pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
           Diaminooctane
 pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
           Diaminooctane
 pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
           ((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
 pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
           ((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
 pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
           ((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
 pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
           ((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
 pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
           ((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
 pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
           ((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
          Length = 472

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 27/112 (24%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFK--------------NG 106
           +++VGAG++G++ A  L   GI  L+I +A     G    T F               NG
Sbjct: 7   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 66

Query: 107 ------WSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQE 152
                 W ++++     + RS F +     V  EDG      G  DED  Q+
Sbjct: 67  GKMNPIWPIVNSTLKLRNFRSDF-DYLAQNVYKEDG------GVYDEDYVQK 111


>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
           Persulfide Reductase
 pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
           Persulfide Reductase
          Length = 574

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
           E   +VG G  GL    SL  LGI + ++E AD + T
Sbjct: 152 EHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXT 188


>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 660

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI 87
          D +++G G+AGL  AV+ Q+ G+ ++V+
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVL 34


>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
          Wolinella Succinogenes
 pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
          Wolinella Succinogenes
          Length = 656

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI 87
          D +++G G+AGL  AV+ Q+ G+ ++V+
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVL 34


>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
           Persulfide Reductase C43sC531S DOUBLE MUTANT
 pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
           Persulfide Reductase C43sC531S DOUBLE MUTANT
          Length = 574

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
           E   +VG G  GL    SL  LGI + ++E AD + T
Sbjct: 152 EHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXT 188


>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
          Wolinella Succinogenes
 pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
          Wolinella Succinogenes
 pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
          Wolinella Succinogenes
 pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
          Wolinella Succinogenes
 pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 656

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI 87
          D +++G G+AGL  AV+ Q+ G+ ++V+
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVL 34


>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
           Persulfide Reductase C531s Mutant
 pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
           Persulfide Reductase C531s Mutant
          Length = 565

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
           E   +VG G  GL    SL  LGI + ++E AD + T
Sbjct: 152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT 188


>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
 pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
 pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
 pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
           Dihydrolipoamide Transacylase (E2b) Bound To Human
           Dihydrolipoamide Dehydrogenase (E3)
          Length = 495

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+ ++G+G  G   A+   +LG  ++ IE+ ++L  GGT L +
Sbjct: 29  DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL--GGTCLNV 69



 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           E +V++GAG+ G+      QRLG     +E    +   G  + + KN   +L   G    
Sbjct: 200 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 259

Query: 119 LRSQFLEIKGMAVKSEDGR 137
           L ++       A K  DG+
Sbjct: 260 LNTKVTG----ATKKSDGK 274


>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex
          Length = 474

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+ ++G+G  G   A+   +LG  ++ IE+ ++L  GGT L +
Sbjct: 8   DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL--GGTCLNV 48



 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           E +V++GAG+ G+      QRLG     +E    +   G  + + KN   +L   G    
Sbjct: 179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 238

Query: 119 LRSQFLEIKGMAVKSEDGR 137
           L ++       A K  DG+
Sbjct: 239 LNTKVTG----ATKKSDGK 253


>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nad+
 pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           Complexed To Nadh
 pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
 pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
           (E3) Complexed To The E3-Binding Domain Of Human E3-
           Binding Protein
          Length = 474

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
           D+ ++G+G  G   A+   +LG  ++ IE+ ++L  GGT L +
Sbjct: 8   DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL--GGTCLNV 48



 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           E +V++GAG+ G+      QRLG     +E    +   G  + + KN   +L   G    
Sbjct: 179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 238

Query: 119 LRSQFLEIKGMAVKSEDGR 137
           L ++       A K  DG+
Sbjct: 239 LNTKVTG----ATKKSDGK 253


>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
 pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
          Length = 286

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 220 IGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVS 265
           + ++EPK    C  +GL   P G P   +  +++G   R  YVP +
Sbjct: 6   VCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGN--RISYVPAA 49


>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Asp66ala
          Mutant In Complex With Nadp And Mes
          Length = 542

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90
          D+++VGAG +GL     L+ LG    VIE A
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETA 48


>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
          Monooxygenase
 pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Complex With
          Nadp
 pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Reduced
          Enzyme Bound To Nadp
 pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Complex With
          Nadp And Mes
          Length = 542

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90
          D+++VGAG +GL     L+ LG    VIE A
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETA 48


>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
           Thaliana
 pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
           Thaliana
          Length = 284

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGG-------TSLTLFKNGWSV 109
           + D+V+VGAG AGL+ A  + +   +   +IEQ+ S   G        +++ + K     
Sbjct: 39  ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF 98

Query: 110 LDALGVGSDLRSQFLEIKGMAV 131
           LD +GV  D +  ++ +K  A+
Sbjct: 99  LDEIGVAYDEQDTYVVVKHAAL 120


>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Arg337lys
          Mutant In Complex With Mes
 pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Arg337lys
          Mutant In Complex With Nadp
 pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Arg337lys
          Mutant Reduced State With Nadp
          Length = 542

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90
          D+++VGAG +GL     L+ LG    VIE A
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETA 48


>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
          Activation And Intermediate Stabilization: Met446gly
          Mutant
          Length = 542

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90
          D+++VGAG +GL     L+ LG    VIE A
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETA 48


>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
           Ammodytes Ammodytes: Stabilization Of The Quaternary
           Structure By Divalent Ions And Structural Changes In The
           Dynamic Active Site
 pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
           Ammodytes Ammodytes: Stabilization Of The Quaternary
           Structure By Divalent Ions And Structural Changes In The
           Dynamic Active Site
 pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
           Ammodytes Ammodytes: Stabilization Of The Quaternary
           Structure By Divalent Ions And Structural Changes In The
           Dynamic Active Site
 pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
           Ammodytes Ammodytes: Stabilization Of The Quaternary
           Structure By Divalent Ions And Structural Changes In The
           Dynamic Active Site
          Length = 486

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL--FKNGW 107
           +V+VGAG++GL+ A  L   G    V+E ++  R GG   T    K GW
Sbjct: 36  VVVVGAGMSGLSAAYVLAGAGHKVTVLEASE--RAGGRVRTHRNSKEGW 82


>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
           From Aspergillus Niger
          Length = 495

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           D++++G G  GL     L   G  +L++E  D  R GG S +
Sbjct: 41  DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD--RIGGRSWS 80


>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
          Protein Ttha0370 From Thermus Thermophilus Hb8
 pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
          Protein Ttha0370 From Thermus Thermophilus Hb8
 pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
          Protein Ttha0370 From Thermus Thermophilus Hb8
          Length = 180

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92
          D+++VG G +GL+ A+ L R G+  LV++   S
Sbjct: 3  DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35


>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger.
 pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger
          Length = 495

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           D++++G G  GL     L   G  +L++E  D  R GG S +
Sbjct: 41  DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD--RIGGRSWS 80


>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
          Reductase
 pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
          Reductase
          Length = 325

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89
          D+VI+G G AGL  A+   R  + +L++E+
Sbjct: 10 DVVIIGGGPAGLTAAIYTGRAQLSTLILEK 39


>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
           From Aspergillus Niger
          Length = 495

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           D++++G G  GL     L   G  +L++E  D  R GG S +
Sbjct: 41  DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD--RIGGRSWS 80


>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
           Involved In Angucycline Biosynthesis
          Length = 500

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 16/172 (9%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
           +++VGAG AG+  A  L+  G+  +V+E+          L        V D  G+     
Sbjct: 14  VIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGI----L 69

Query: 121 SQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRIL---LETLANQLPPESVQFS 177
            +F E++  + +   G     FG   E A Q  + V + +    LE  A  L  + ++  
Sbjct: 70  PRFGEVE-TSTQGHFGGLPIDFGVL-EGAWQAAKTVPQSVTETHLEQWATGLGAD-IRRG 126

Query: 178 SELAKIETSGNGVTILELVNGTR----IYANIVIGCDGIRSPIAKWIGFSEP 225
            E+  +   G GVT+   V G      + A  ++GCDG RS + K  GF  P
Sbjct: 127 HEVLSLTDDGAGVTV--EVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFP 176


>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
 pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
          Length = 470

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 58  KEDIVIVGAGIAGLATAVSLQR------LGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           K+ +VI+G GI GLA A  +++      L +   ++E   S R GG   T+ K+G+ +
Sbjct: 5   KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEA--SPRVGGKIQTVKKDGYII 60


>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
 pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
 pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
 pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
 pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 1)
 pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 1)
 pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 2)
 pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 2)
 pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 3)
 pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 3)
 pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 4)
 pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
          (Form 4)
          Length = 545

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          D V++GAG+ G+  A  + + G+  L IE  + +  GGT
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDV--GGT 47


>pdb|2JDF|A Chain A, Human Gamma-B Crystallin
          Length = 182

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPF 245
           C+ IR     W+ +  P Y GH  +   G YP+ Q +
Sbjct: 32  CNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQW 68


>pdb|2V2U|A Chain A, Structure Of Mouse Gammac-Crystallin
 pdb|2V2U|B Chain B, Structure Of Mouse Gammac-Crystallin
          Length = 173

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPF 245
           C+ +R     W+ +  P Y GH  +   G YP+ Q +
Sbjct: 32  CNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQW 68


>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
           Coenzyme A- Disulfide Reductase: A Structural Analysis
           Of Dual Nad(p)h Specificity
 pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
           Coenzyme A- Disulfide Reductase: A Structural Analysis
           Of Dual Nad(p)h Specificity
 pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
           Coenzyme A- Disulfide Reductase: A Structural Analysis
           Of Dual Nad(p)h Specificity
 pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
           Coenzyme A- Disulfide Reductase: A Structural Analysis
           Of Dual Nad(p)h Specificity
 pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
           Coenzyme A- Disulfide Reductase: A Structural Analysis
           Of Dual Nad(P)h Specificity
 pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
           Coenzyme A- Disulfide Reductase: A Structural Analysis
           Of Dual Nad(P)h Specificity
          Length = 480

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
           ED+ I+G G  GL  A +   LG    +IE+ D + T
Sbjct: 187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT 223


>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
           Xanthus With Acifluorfen
 pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
           Xanthus With Acifluorfen
 pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
           Xanthus
 pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
           Xanthus
          Length = 478

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           ++ +VG GI+GLA A  L+  G  ++++E   S R GG   T    G+ V
Sbjct: 18  NVAVVGGGISGLAVAHHLRSRGTDAVLLES--SARLGGAVGTHALAGYLV 65


>pdb|1I5I|A Chain A, The C18s Mutant Of Bovine (Gamma-B)-Crystallin
          Length = 174

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPF 245
           C+ IR     W+ +  P Y GH  +   G YP+ Q +
Sbjct: 32  CNSIRVDSGCWMLYERPNYQGHQYFLRRGDYPDYQQW 68


>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
           Thermophilus Hb8 With Psbdo
 pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
           Thermophilus Hb8 With Psbdo
 pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
           Different Lipoamide Dehydrogenase(e3s) From Thermus
           Thermophilus
 pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
           Different Lipoamide Dehydrogenase(e3s) From Thermus
           Thermophilus
          Length = 455

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL 100
           D++++GAG  G   A+   +LG+   V+E+  +L  GGT L
Sbjct: 3   DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL--GGTCL 41


>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
 pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
          With Suicide Substrate L-vinylglycine
 pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
          With L-Leucine
 pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
          With L- Phenylalanine
          Length = 486

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
          +V+VGAG++GL+ A  L   G    V+E ++  R GG
Sbjct: 36 VVVVGAGMSGLSAAYVLSGAGHQVTVLEASE--RAGG 70


>pdb|1AMM|A Chain A, 1.2 Angstrom Structure Of Gamma-B Crystallin At 150k
 pdb|1GCS|A Chain A, Structure Of The Bovine Gamma-B Crystallin At 150k
 pdb|4GCR|A Chain A, Structure Of The Bovine Eye Lens Protein Gamma-B
           (Gamma-Ii)- Crystallin At 1.47 Angstroms
          Length = 174

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPF 245
           C+ IR     W+ +  P Y GH  +   G YP+ Q +
Sbjct: 32  CNSIRVDSGCWMLYERPNYQGHQYFLRRGDYPDYQQW 68


>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
          Length = 641

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI 87
          D+++VGAG AG   A+++ R G+  L+I
Sbjct: 23 DVIVVGAGHAGCEAALAVARGGLHCLLI 50


>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
           Steroid Substrate. Implications For Fad Dependent
           Alcohol Oxidases
 pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
           Steroid Substrate. Implications For Fad Dependent
           Alcohol Oxidases
          Length = 507

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 54  ADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLF 103
           AD  +   +++G+G  G   A+ L + GI + ++E   S  T G+   +F
Sbjct: 7   ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIF 56


>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
 pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
          Length = 504

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLVIE 88
          + ++GAG++GLA A  L+  G+   V E
Sbjct: 16 VAVIGAGVSGLAAAYKLKIHGLNVTVFE 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,677,475
Number of Sequences: 62578
Number of extensions: 376417
Number of successful extensions: 1277
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 200
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)