Query 022652
Match_columns 294
No_of_seqs 269 out of 3202
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06753 hypothetical protein; 100.0 1.2E-27 2.7E-32 209.4 26.7 214 59-277 1-215 (373)
2 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.3E-27 5E-32 208.1 25.3 217 58-277 2-225 (387)
3 PRK06617 2-octaprenyl-6-methox 100.0 8.2E-27 1.8E-31 203.9 26.6 211 58-275 1-219 (374)
4 PRK05868 hypothetical protein; 100.0 2.2E-26 4.7E-31 200.7 28.9 217 59-276 2-224 (372)
5 PRK07588 hypothetical protein; 100.0 1.8E-26 3.9E-31 203.2 27.4 216 59-277 1-223 (391)
6 KOG2614 Kynurenine 3-monooxyge 100.0 2.6E-27 5.7E-32 198.3 18.7 214 58-273 2-222 (420)
7 PRK08163 salicylate hydroxylas 100.0 7E-26 1.5E-30 199.9 27.9 216 57-273 3-227 (396)
8 PRK08013 oxidoreductase; Provi 100.0 2.4E-26 5.1E-31 202.8 24.6 210 58-270 3-223 (400)
9 PRK06475 salicylate hydroxylas 100.0 3.7E-26 8E-31 201.6 25.7 217 59-276 3-236 (400)
10 PRK08850 2-octaprenyl-6-methox 100.0 5.5E-26 1.2E-30 200.9 25.5 216 58-276 4-229 (405)
11 PRK07045 putative monooxygenas 99.9 2E-25 4.3E-30 196.4 26.3 218 57-278 4-230 (388)
12 PRK06183 mhpA 3-(3-hydroxyphen 99.9 1.7E-25 3.6E-30 204.3 26.0 219 56-276 8-237 (538)
13 PRK06847 hypothetical protein; 99.9 2.4E-25 5.2E-30 195.1 25.7 218 57-278 3-226 (375)
14 TIGR01989 COQ6 Ubiquinone bios 99.9 1.8E-25 3.8E-30 199.2 25.1 214 59-276 1-245 (437)
15 PRK07364 2-octaprenyl-6-methox 99.9 2E-25 4.4E-30 198.1 24.8 214 57-274 17-240 (415)
16 PRK06184 hypothetical protein; 99.9 3.6E-25 7.7E-30 200.6 26.4 215 57-275 2-230 (502)
17 PRK08773 2-octaprenyl-3-methyl 99.9 3E-25 6.4E-30 195.5 25.2 218 56-276 4-230 (392)
18 PRK07538 hypothetical protein; 99.9 9.5E-25 2.1E-29 193.4 28.0 217 59-278 1-237 (413)
19 PRK07236 hypothetical protein; 99.9 5.7E-25 1.2E-29 193.2 25.8 201 57-266 5-212 (386)
20 PTZ00367 squalene epoxidase; P 99.9 7.3E-25 1.6E-29 198.4 26.6 217 57-278 32-283 (567)
21 PRK09126 hypothetical protein; 99.9 3.7E-25 8E-30 195.0 23.6 218 57-277 2-229 (392)
22 TIGR03219 salicylate_mono sali 99.9 3.7E-25 7.9E-30 196.2 23.6 211 60-275 2-236 (414)
23 TIGR01988 Ubi-OHases Ubiquinon 99.9 7.1E-25 1.5E-29 192.8 24.7 214 60-276 1-224 (385)
24 PRK07333 2-octaprenyl-6-methox 99.9 1.2E-24 2.6E-29 192.5 26.0 214 58-274 1-226 (403)
25 PRK08244 hypothetical protein; 99.9 1.5E-24 3.3E-29 196.2 26.4 211 58-275 2-219 (493)
26 PRK05714 2-octaprenyl-3-methyl 99.9 6.1E-25 1.3E-29 194.4 22.9 207 58-267 2-220 (405)
27 TIGR01984 UbiH 2-polyprenyl-6- 99.9 9.2E-25 2E-29 191.9 23.0 212 60-274 1-222 (382)
28 PRK07494 2-octaprenyl-6-methox 99.9 1.2E-24 2.6E-29 191.4 23.3 214 56-274 5-226 (388)
29 PLN02927 antheraxanthin epoxid 99.9 5E-24 1.1E-28 194.1 27.9 222 56-278 79-313 (668)
30 PRK06185 hypothetical protein; 99.9 4.9E-24 1.1E-28 188.8 26.7 218 55-276 3-229 (407)
31 PRK07190 hypothetical protein; 99.9 5.6E-24 1.2E-28 191.0 26.3 215 57-273 4-225 (487)
32 PRK08849 2-octaprenyl-3-methyl 99.9 5.8E-24 1.3E-28 186.7 25.0 210 58-271 3-223 (384)
33 PF01494 FAD_binding_3: FAD bi 99.9 2E-24 4.3E-29 187.7 21.2 218 58-275 1-237 (356)
34 PRK07608 ubiquinone biosynthes 99.9 1.7E-23 3.7E-28 184.2 24.6 213 57-274 4-226 (388)
35 PRK05732 2-octaprenyl-6-methox 99.9 1.7E-23 3.7E-28 184.7 24.3 217 57-276 2-230 (395)
36 PRK08243 4-hydroxybenzoate 3-m 99.9 4.1E-23 9E-28 181.8 26.3 164 58-224 2-173 (392)
37 PRK08294 phenol 2-monooxygenas 99.9 2.6E-23 5.6E-28 191.8 26.0 215 56-271 30-269 (634)
38 PLN02985 squalene monooxygenas 99.9 3.9E-23 8.5E-28 186.2 26.0 219 55-278 40-270 (514)
39 PRK06126 hypothetical protein; 99.9 3.1E-23 6.7E-28 189.9 25.8 217 55-272 4-251 (545)
40 PRK08020 ubiF 2-octaprenyl-3-m 99.9 6E-23 1.3E-27 180.9 24.5 212 57-272 4-226 (391)
41 TIGR02032 GG-red-SF geranylger 99.9 1.2E-22 2.7E-27 172.1 24.3 224 59-293 1-233 (295)
42 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 1.7E-22 3.6E-27 177.5 25.4 213 58-276 2-226 (390)
43 PRK08132 FAD-dependent oxidore 99.9 3.3E-22 7.2E-27 183.0 27.4 213 55-271 20-245 (547)
44 PRK06834 hypothetical protein; 99.9 2.6E-22 5.5E-27 180.5 25.7 207 57-274 2-214 (488)
45 PRK06996 hypothetical protein; 99.9 2.9E-22 6.3E-27 176.7 24.6 208 55-268 8-228 (398)
46 COG0644 FixC Dehydrogenases (f 99.9 1.6E-21 3.5E-26 171.6 24.4 210 57-279 2-220 (396)
47 PLN00093 geranylgeranyl diphos 99.9 1.2E-20 2.6E-25 167.6 27.2 207 54-274 35-262 (450)
48 TIGR02023 BchP-ChlP geranylger 99.9 2.2E-20 4.7E-25 164.3 24.7 201 59-273 1-218 (388)
49 KOG1298 Squalene monooxygenase 99.9 3.8E-21 8.3E-26 159.1 18.0 226 55-282 42-275 (509)
50 PRK11445 putative oxidoreducta 99.9 3.9E-20 8.6E-25 160.4 21.4 155 58-223 1-166 (351)
51 TIGR02028 ChlP geranylgeranyl 99.8 1.1E-18 2.3E-23 153.7 24.1 204 59-274 1-223 (398)
52 PLN02697 lycopene epsilon cycl 99.8 2.5E-18 5.5E-23 154.4 24.9 198 57-275 107-324 (529)
53 PRK10157 putative oxidoreducta 99.8 2.7E-18 5.8E-23 152.5 23.3 167 57-225 4-175 (428)
54 PRK10015 oxidoreductase; Provi 99.8 1.5E-18 3.3E-23 153.9 21.0 165 57-223 4-173 (429)
55 PLN02463 lycopene beta cyclase 99.8 9.3E-18 2E-22 148.6 22.9 194 57-271 27-241 (447)
56 PF04820 Trp_halogenase: Trypt 99.8 2.9E-17 6.2E-22 146.3 20.6 227 60-291 1-290 (454)
57 PF05834 Lycopene_cycl: Lycope 99.8 2.8E-16 6.2E-21 137.2 22.3 189 60-274 1-202 (374)
58 TIGR01790 carotene-cycl lycope 99.8 3.8E-16 8.3E-21 137.5 22.5 142 60-217 1-144 (388)
59 PRK04176 ribulose-1,5-biphosph 99.7 6.8E-17 1.5E-21 133.2 14.0 137 55-220 22-179 (257)
60 KOG3855 Monooxygenase involved 99.7 5E-16 1.1E-20 130.2 17.3 215 57-274 35-278 (481)
61 PRK08255 salicylyl-CoA 5-hydro 99.7 1.7E-16 3.8E-21 149.9 16.1 140 60-220 2-147 (765)
62 TIGR00292 thiazole biosynthesi 99.7 3.9E-16 8.5E-21 128.3 15.0 136 56-220 19-176 (254)
63 TIGR01789 lycopene_cycl lycope 99.7 5E-15 1.1E-19 128.9 20.9 189 60-277 1-199 (370)
64 COG2081 Predicted flavoprotein 99.7 3.6E-16 7.7E-21 131.6 12.0 161 57-223 2-187 (408)
65 PF01946 Thi4: Thi4 family; PD 99.7 8.4E-16 1.8E-20 119.4 11.7 135 56-219 15-170 (230)
66 COG1635 THI4 Ribulose 1,5-bisp 99.7 2.7E-15 5.9E-20 115.9 13.8 135 57-220 29-184 (262)
67 PF03486 HI0933_like: HI0933-l 99.7 6.1E-16 1.3E-20 135.2 10.6 141 59-215 1-167 (409)
68 PF01266 DAO: FAD dependent ox 99.6 1.3E-14 2.9E-19 126.0 14.1 72 152-224 140-214 (358)
69 TIGR01377 soxA_mon sarcosine o 99.6 1.2E-13 2.7E-18 121.3 19.7 167 59-227 1-214 (380)
70 PRK11259 solA N-methyltryptoph 99.6 1.4E-13 3.1E-18 120.7 18.9 59 155-215 145-205 (376)
71 COG0579 Predicted dehydrogenas 99.6 1.2E-13 2.5E-18 119.9 16.5 167 57-224 2-222 (429)
72 PRK11728 hydroxyglutarate oxid 99.6 1.8E-13 4E-18 120.7 17.9 68 154-223 144-214 (393)
73 PLN02172 flavin-containing mon 99.6 3.9E-14 8.4E-19 126.4 13.6 189 57-257 9-214 (461)
74 COG2072 TrkA Predicted flavopr 99.5 2.2E-13 4.7E-18 121.1 16.4 172 56-259 6-187 (443)
75 TIGR01373 soxB sarcosine oxida 99.5 5.5E-13 1.2E-17 118.2 18.9 112 155-272 179-294 (407)
76 PRK13369 glycerol-3-phosphate 99.5 1.1E-12 2.3E-17 119.2 20.9 68 155-223 151-226 (502)
77 PRK12266 glpD glycerol-3-phosp 99.5 1.4E-12 3E-17 118.4 21.5 67 155-222 151-226 (508)
78 PRK01747 mnmC bifunctional tRN 99.5 3.1E-13 6.6E-18 126.6 17.7 60 155-215 404-464 (662)
79 PRK12409 D-amino acid dehydrog 99.5 5.8E-13 1.3E-17 118.2 18.7 69 156-225 194-270 (410)
80 PF01134 GIDA: Glucose inhibit 99.5 4.3E-14 9.4E-19 121.2 10.9 144 60-214 1-152 (392)
81 PRK05192 tRNA uridine 5-carbox 99.5 1.3E-13 2.9E-18 124.4 14.1 146 57-215 3-158 (618)
82 PF13738 Pyr_redox_3: Pyridine 99.5 5.9E-14 1.3E-18 112.4 8.6 171 62-257 1-177 (203)
83 PRK05257 malate:quinone oxidor 99.5 8.9E-13 1.9E-17 118.6 15.3 71 154-224 178-257 (494)
84 KOG2415 Electron transfer flav 99.5 1E-11 2.2E-16 104.8 19.8 160 54-220 72-262 (621)
85 PRK00711 D-amino acid dehydrog 99.5 2.6E-12 5.7E-17 114.3 17.5 71 155-226 197-270 (416)
86 PLN02464 glycerol-3-phosphate 99.5 3.8E-12 8.3E-17 117.8 18.5 67 155-221 228-304 (627)
87 PLN02661 Putative thiazole syn 99.5 1.7E-12 3.7E-17 109.9 14.7 131 56-215 90-245 (357)
88 TIGR01320 mal_quin_oxido malat 99.5 1.7E-12 3.7E-17 116.6 15.4 71 154-224 173-251 (483)
89 PRK11101 glpA sn-glycerol-3-ph 99.5 1.5E-12 3.1E-17 119.2 14.7 73 154-226 144-224 (546)
90 COG0492 TrxB Thioredoxin reduc 99.5 1.6E-12 3.4E-17 109.3 13.6 184 57-292 2-190 (305)
91 KOG1399 Flavin-containing mono 99.5 2.2E-12 4.7E-17 113.4 14.7 172 57-257 5-196 (448)
92 PF12831 FAD_oxidored: FAD dep 99.4 8.3E-14 1.8E-18 123.8 5.3 149 60-223 1-158 (428)
93 PRK13339 malate:quinone oxidor 99.4 9.2E-12 2E-16 111.4 17.9 71 154-224 179-258 (497)
94 KOG2820 FAD-dependent oxidored 99.4 5.1E-12 1.1E-16 103.9 14.4 171 56-226 5-226 (399)
95 PTZ00383 malate:quinone oxidor 99.4 1.7E-12 3.7E-17 116.5 11.7 68 154-222 206-282 (497)
96 TIGR03329 Phn_aa_oxid putative 99.4 1.8E-12 4E-17 116.5 11.9 59 154-215 178-238 (460)
97 TIGR03364 HpnW_proposed FAD de 99.4 1.9E-11 4.1E-16 106.9 17.8 56 154-215 140-198 (365)
98 COG0578 GlpA Glycerol-3-phosph 99.4 1.3E-11 2.9E-16 109.4 16.8 211 57-268 11-282 (532)
99 PRK08274 tricarballylate dehyd 99.4 6E-12 1.3E-16 113.5 13.9 158 57-220 3-198 (466)
100 TIGR01292 TRX_reduct thioredox 99.4 5.8E-12 1.3E-16 107.0 12.2 111 59-215 1-113 (300)
101 COG0665 DadA Glycine/D-amino a 99.4 4.5E-11 9.8E-16 105.3 17.9 120 155-277 152-277 (387)
102 PRK06481 fumarate reductase fl 99.4 9.7E-12 2.1E-16 112.9 13.7 165 56-220 59-257 (506)
103 PF00743 FMO-like: Flavin-bind 99.4 1.2E-12 2.5E-17 118.6 7.5 174 59-256 2-192 (531)
104 KOG2844 Dimethylglycine dehydr 99.3 9.5E-12 2.1E-16 110.5 11.7 87 154-241 182-271 (856)
105 PRK15317 alkyl hydroperoxide r 99.3 7E-11 1.5E-15 107.7 16.8 113 56-215 209-323 (517)
106 TIGR00136 gidA glucose-inhibit 99.3 1.8E-11 3.8E-16 110.7 12.6 145 59-215 1-155 (617)
107 PF00890 FAD_binding_2: FAD bi 99.3 1.5E-11 3.3E-16 109.4 11.8 155 60-215 1-204 (417)
108 TIGR00275 flavoprotein, HI0933 99.3 2.6E-11 5.6E-16 107.0 13.0 155 62-223 1-180 (400)
109 COG3380 Predicted NAD/FAD-depe 99.3 1.1E-11 2.4E-16 99.0 9.4 136 59-212 2-158 (331)
110 PRK07573 sdhA succinate dehydr 99.3 4E-11 8.7E-16 111.4 13.3 37 57-93 34-70 (640)
111 TIGR01813 flavo_cyto_c flavocy 99.3 6.4E-11 1.4E-15 106.1 13.4 63 158-220 129-198 (439)
112 PRK08401 L-aspartate oxidase; 99.3 8.4E-11 1.8E-15 105.8 13.9 150 59-217 2-178 (466)
113 PRK07121 hypothetical protein; 99.3 1.4E-10 3.1E-15 105.2 15.4 63 158-220 176-245 (492)
114 PRK06854 adenylylsulfate reduc 99.3 5.5E-11 1.2E-15 110.0 12.6 151 57-215 10-196 (608)
115 TIGR01812 sdhA_frdA_Gneg succi 99.3 1.1E-10 2.4E-15 107.7 14.2 157 60-217 1-194 (566)
116 TIGR03140 AhpF alkyl hydropero 99.3 8.8E-11 1.9E-15 107.0 13.3 112 56-214 210-323 (515)
117 PRK06452 sdhA succinate dehydr 99.3 1.6E-10 3.5E-15 106.2 15.1 159 57-216 4-200 (566)
118 PRK06175 L-aspartate oxidase; 99.2 1.2E-10 2.6E-15 103.7 13.2 157 57-216 3-191 (433)
119 PRK07804 L-aspartate oxidase; 99.2 1.8E-10 3.9E-15 105.4 14.6 161 56-217 14-213 (541)
120 PRK09231 fumarate reductase fl 99.2 2.2E-10 4.7E-15 105.6 14.9 159 57-216 3-198 (582)
121 PRK06069 sdhA succinate dehydr 99.2 3.1E-10 6.7E-15 104.8 15.9 160 57-217 4-203 (577)
122 PRK05945 sdhA succinate dehydr 99.2 1.4E-10 3E-15 106.9 13.2 159 57-216 2-199 (575)
123 TIGR00551 nadB L-aspartate oxi 99.2 1.4E-10 3E-15 105.1 12.7 158 58-217 2-192 (488)
124 PRK06263 sdhA succinate dehydr 99.2 3.3E-10 7E-15 103.9 15.1 157 57-215 6-198 (543)
125 PF00070 Pyr_redox: Pyridine n 99.2 1.2E-10 2.5E-15 78.5 9.0 80 60-198 1-80 (80)
126 PRK12834 putative FAD-binding 99.2 2.3E-10 5E-15 105.0 13.2 36 57-92 3-38 (549)
127 PTZ00139 Succinate dehydrogena 99.2 3.5E-10 7.5E-15 104.8 14.4 159 57-216 28-231 (617)
128 PRK08071 L-aspartate oxidase; 99.2 2.5E-10 5.3E-15 103.8 13.1 156 58-216 3-192 (510)
129 TIGR02730 carot_isom carotene 99.2 2.9E-10 6.4E-15 103.2 13.6 62 159-220 229-292 (493)
130 TIGR01176 fum_red_Fp fumarate 99.2 4.9E-10 1.1E-14 103.1 15.1 159 57-216 2-197 (580)
131 TIGR03143 AhpF_homolog putativ 99.2 1.5E-10 3.3E-15 106.2 11.8 111 57-215 3-115 (555)
132 PRK08275 putative oxidoreducta 99.2 1.9E-10 4E-15 105.7 12.3 158 57-216 8-202 (554)
133 PRK07803 sdhA succinate dehydr 99.2 8E-10 1.7E-14 102.7 16.2 37 57-93 7-43 (626)
134 KOG2853 Possible oxidoreductas 99.2 3.4E-10 7.3E-15 93.4 12.1 38 57-94 85-126 (509)
135 PRK09078 sdhA succinate dehydr 99.2 3.4E-10 7.3E-15 104.7 13.7 159 57-216 11-214 (598)
136 PRK07057 sdhA succinate dehydr 99.2 5.1E-10 1.1E-14 103.3 14.7 159 57-216 11-213 (591)
137 PLN00128 Succinate dehydrogena 99.2 3.4E-10 7.3E-15 105.0 13.2 159 57-216 49-252 (635)
138 PRK08958 sdhA succinate dehydr 99.2 5.7E-10 1.2E-14 102.9 14.5 159 57-216 6-208 (588)
139 TIGR00562 proto_IX_ox protopor 99.2 8.2E-10 1.8E-14 99.7 14.6 60 58-119 2-82 (462)
140 COG1233 Phytoene dehydrogenase 99.2 1.6E-10 3.6E-15 104.3 9.9 55 158-212 223-279 (487)
141 PRK11883 protoporphyrinogen ox 99.1 1.2E-09 2.6E-14 98.3 14.9 55 160-215 222-276 (451)
142 PTZ00363 rab-GDP dissociation 99.1 1.3E-08 2.8E-13 90.3 20.9 38 57-94 3-40 (443)
143 PRK07395 L-aspartate oxidase; 99.1 7.8E-10 1.7E-14 101.2 13.6 158 56-215 7-198 (553)
144 PRK08205 sdhA succinate dehydr 99.1 1.1E-09 2.5E-14 101.1 14.6 58 159-216 140-208 (583)
145 PRK07843 3-ketosteroid-delta-1 99.1 9.5E-10 2.1E-14 101.0 14.0 38 56-93 5-42 (557)
146 PRK12416 protoporphyrinogen ox 99.1 1.6E-09 3.5E-14 97.8 15.2 51 160-211 227-277 (463)
147 PLN02815 L-aspartate oxidase 99.1 4E-10 8.6E-15 103.6 11.3 158 57-216 28-224 (594)
148 PRK10262 thioredoxin reductase 99.1 9.1E-10 2E-14 94.5 12.9 35 56-90 4-38 (321)
149 PRK06134 putative FAD-binding 99.1 1.3E-09 2.8E-14 100.7 14.6 39 55-93 9-47 (581)
150 TIGR02485 CobZ_N-term precorri 99.1 7.1E-10 1.5E-14 99.1 12.5 62 159-220 123-189 (432)
151 PLN02568 polyamine oxidase 99.1 2E-09 4.2E-14 98.1 15.1 54 158-212 241-294 (539)
152 TIGR02734 crtI_fam phytoene de 99.1 7.2E-10 1.6E-14 101.0 12.3 62 159-220 219-282 (502)
153 PRK07512 L-aspartate oxidase; 99.1 6.9E-10 1.5E-14 100.9 11.6 58 159-216 136-199 (513)
154 PRK05335 tRNA (uracil-5-)-meth 99.1 3.4E-10 7.3E-15 98.4 8.8 113 58-184 2-126 (436)
155 PLN02612 phytoene desaturase 99.1 4.3E-08 9.4E-13 90.3 23.0 63 56-118 91-169 (567)
156 TIGR01811 sdhA_Bsu succinate d 99.1 1.7E-09 3.7E-14 100.0 13.9 33 61-93 1-33 (603)
157 KOG2404 Fumarate reductase, fl 99.1 5.1E-10 1.1E-14 91.7 9.1 45 171-215 159-207 (477)
158 PRK09077 L-aspartate oxidase; 99.1 1.5E-09 3.2E-14 99.3 13.0 36 57-93 7-42 (536)
159 PRK12842 putative succinate de 99.1 1.9E-09 4.2E-14 99.5 13.8 38 56-93 7-44 (574)
160 PRK12837 3-ketosteroid-delta-1 99.1 1.1E-09 2.3E-14 99.8 12.0 36 57-93 6-41 (513)
161 PRK08626 fumarate reductase fl 99.1 1.4E-09 3.1E-14 101.4 12.9 37 57-93 4-40 (657)
162 COG1232 HemY Protoporphyrinoge 99.1 2.8E-09 6E-14 93.6 13.9 61 60-120 2-79 (444)
163 KOG2852 Possible oxidoreductas 99.1 3.5E-09 7.7E-14 85.6 13.1 158 57-215 9-209 (380)
164 PRK12844 3-ketosteroid-delta-1 99.1 4E-09 8.6E-14 96.9 14.8 37 57-93 5-41 (557)
165 PLN02268 probable polyamine ox 99.1 4.1E-09 8.8E-14 94.4 14.6 36 59-94 1-36 (435)
166 PRK07233 hypothetical protein; 99.1 1.2E-09 2.6E-14 97.7 11.2 54 160-214 199-254 (434)
167 PRK05249 soluble pyridine nucl 99.1 1.8E-09 4E-14 97.3 12.1 37 57-93 4-40 (461)
168 TIGR02731 phytoene_desat phyto 99.1 4.9E-09 1.1E-13 94.4 14.5 59 60-118 1-75 (453)
169 PF13454 NAD_binding_9: FAD-NA 99.0 1.6E-09 3.5E-14 82.8 9.7 41 171-212 114-155 (156)
170 PRK12839 hypothetical protein; 99.0 3.4E-09 7.3E-14 97.5 13.3 38 56-93 6-43 (572)
171 PRK12845 3-ketosteroid-delta-1 99.0 5.3E-09 1.1E-13 96.0 14.5 38 56-94 14-51 (564)
172 PRK09897 hypothetical protein; 99.0 2.5E-09 5.4E-14 96.8 12.0 147 59-214 2-166 (534)
173 PRK08641 sdhA succinate dehydr 99.0 3.2E-09 6.9E-14 98.1 13.0 36 58-93 3-38 (589)
174 PF06039 Mqo: Malate:quinone o 99.0 6.3E-09 1.4E-13 90.1 13.7 70 155-224 177-255 (488)
175 COG0445 GidA Flavin-dependent 99.0 5E-10 1.1E-14 98.1 6.8 142 57-215 3-159 (621)
176 PTZ00306 NADH-dependent fumara 99.0 2.1E-09 4.5E-14 106.3 11.9 38 56-93 407-444 (1167)
177 PRK08010 pyridine nucleotide-d 99.0 2.1E-09 4.7E-14 96.3 11.0 35 57-91 2-36 (441)
178 PRK12843 putative FAD-binding 99.0 6.1E-09 1.3E-13 96.2 14.1 61 160-220 222-288 (578)
179 TIGR02061 aprA adenosine phosp 99.0 5.2E-09 1.1E-13 96.4 13.5 34 60-93 1-38 (614)
180 PLN02576 protoporphyrinogen ox 99.0 1.2E-08 2.6E-13 92.9 15.5 38 57-94 11-49 (496)
181 PRK06416 dihydrolipoamide dehy 99.0 4.8E-09 1E-13 94.6 12.7 35 57-91 3-37 (462)
182 TIGR01424 gluta_reduc_2 glutat 99.0 3.9E-09 8.5E-14 94.7 12.0 33 58-90 2-34 (446)
183 PRK06467 dihydrolipoamide dehy 99.0 2.3E-09 5E-14 96.7 10.5 37 57-93 3-39 (471)
184 PRK12835 3-ketosteroid-delta-1 99.0 4.1E-10 8.9E-15 103.8 5.0 37 57-93 10-46 (584)
185 PRK07251 pyridine nucleotide-d 99.0 3.2E-09 7E-14 95.1 10.6 36 57-92 2-37 (438)
186 PRK05976 dihydrolipoamide dehy 99.0 7.8E-09 1.7E-13 93.5 13.1 34 57-90 3-36 (472)
187 PRK06115 dihydrolipoamide dehy 99.0 4.7E-09 1E-13 94.6 11.7 36 58-93 3-38 (466)
188 PF07992 Pyr_redox_2: Pyridine 99.0 6.4E-10 1.4E-14 88.8 5.4 33 60-92 1-33 (201)
189 PRK13800 putative oxidoreducta 99.0 1.4E-08 3E-13 98.3 15.4 36 57-92 12-47 (897)
190 PRK14694 putative mercuric red 99.0 1.2E-08 2.6E-13 92.1 14.0 37 55-91 3-39 (468)
191 PLN02676 polyamine oxidase 99.0 4.6E-08 9.9E-13 88.5 17.3 57 158-215 223-287 (487)
192 COG1231 Monoamine oxidase [Ami 99.0 9.5E-09 2E-13 88.7 12.0 38 56-93 5-42 (450)
193 PRK09754 phenylpropionate diox 99.0 9.3E-09 2E-13 90.9 12.2 109 58-215 3-113 (396)
194 PRK04965 NADH:flavorubredoxin 99.0 1E-08 2.2E-13 90.0 12.4 107 58-222 141-249 (377)
195 PRK06370 mercuric reductase; V 99.0 7.4E-09 1.6E-13 93.4 11.7 35 57-91 4-38 (463)
196 PRK12779 putative bifunctional 98.9 2.8E-09 6.2E-14 102.7 9.0 37 57-93 305-341 (944)
197 TIGR00137 gid_trmFO tRNA:m(5)U 98.9 6.3E-09 1.4E-13 91.1 10.2 35 59-93 1-35 (433)
198 TIGR01350 lipoamide_DH dihydro 98.9 1.8E-08 4E-13 90.9 13.5 35 58-93 1-35 (461)
199 TIGR01421 gluta_reduc_1 glutat 98.9 8E-09 1.7E-13 92.7 11.0 34 58-91 2-35 (450)
200 PRK13977 myosin-cross-reactive 98.9 1.6E-08 3.4E-13 91.1 12.8 38 57-94 21-62 (576)
201 PRK09754 phenylpropionate diox 98.9 1.3E-08 2.8E-13 89.9 12.1 99 58-215 144-242 (396)
202 PRK06116 glutathione reductase 98.9 7.3E-09 1.6E-13 93.1 10.7 34 57-90 3-36 (450)
203 KOG0029 Amine oxidase [Seconda 98.9 3.6E-09 7.8E-14 94.9 8.6 39 56-94 13-51 (501)
204 KOG2311 NAD/FAD-utilizing prot 98.9 3.3E-09 7.1E-14 91.3 7.8 141 56-213 26-185 (679)
205 PF13450 NAD_binding_8: NAD(P) 98.9 3.1E-09 6.7E-14 68.8 5.8 32 63-94 1-32 (68)
206 PLN02507 glutathione reductase 98.9 2.8E-08 6E-13 90.2 13.6 34 56-89 23-56 (499)
207 PRK06327 dihydrolipoamide dehy 98.9 1.6E-08 3.4E-13 91.5 11.4 33 57-89 3-35 (475)
208 PRK09853 putative selenate red 98.9 1E-08 2.2E-13 98.1 10.4 38 56-93 537-574 (1019)
209 PRK14727 putative mercuric red 98.9 2.8E-08 6.1E-13 90.0 12.6 38 56-93 14-51 (479)
210 TIGR01372 soxA sarcosine oxida 98.9 2.3E-08 4.9E-13 97.7 12.7 36 58-93 163-198 (985)
211 COG1249 Lpd Pyruvate/2-oxoglut 98.9 8.7E-09 1.9E-13 91.3 8.9 44 57-102 3-46 (454)
212 COG3634 AhpF Alkyl hydroperoxi 98.9 6.6E-09 1.4E-13 86.2 7.5 153 56-259 209-366 (520)
213 COG2907 Predicted NAD/FAD-bind 98.9 6.2E-08 1.3E-12 80.6 13.1 61 57-118 7-87 (447)
214 PRK12831 putative oxidoreducta 98.9 5.8E-09 1.2E-13 93.8 7.6 38 56-93 138-175 (464)
215 PRK05249 soluble pyridine nucl 98.9 2.9E-08 6.4E-13 89.5 12.0 100 58-216 175-274 (461)
216 PRK13748 putative mercuric red 98.9 3.6E-08 7.9E-13 91.1 12.9 34 57-90 97-130 (561)
217 PRK06116 glutathione reductase 98.8 3.2E-08 7E-13 89.0 11.8 101 58-216 167-267 (450)
218 COG1053 SdhA Succinate dehydro 98.8 1.9E-08 4.1E-13 91.6 10.0 39 56-94 4-42 (562)
219 TIGR01421 gluta_reduc_1 glutat 98.8 3.6E-08 7.8E-13 88.5 11.7 101 58-216 166-267 (450)
220 COG0029 NadB Aspartate oxidase 98.8 3E-08 6.4E-13 86.3 10.6 154 60-216 9-198 (518)
221 COG1249 Lpd Pyruvate/2-oxoglut 98.8 4E-08 8.6E-13 87.1 11.7 101 57-216 172-274 (454)
222 PRK09564 coenzyme A disulfide 98.8 2.6E-08 5.6E-13 89.5 10.6 110 60-215 2-116 (444)
223 PTZ00058 glutathione reductase 98.8 2.1E-08 4.4E-13 91.8 9.9 35 56-90 46-80 (561)
224 TIGR03315 Se_ygfK putative sel 98.8 1.7E-08 3.6E-13 97.0 9.5 37 57-93 536-572 (1012)
225 TIGR01350 lipoamide_DH dihydro 98.8 4.7E-08 1E-12 88.2 11.6 101 58-217 170-272 (461)
226 PRK06416 dihydrolipoamide dehy 98.8 4.3E-08 9.3E-13 88.5 11.2 100 58-216 172-274 (462)
227 PRK06292 dihydrolipoamide dehy 98.8 7.5E-08 1.6E-12 86.9 12.8 34 57-90 2-35 (460)
228 TIGR03378 glycerol3P_GlpB glyc 98.8 1.2E-07 2.6E-12 82.8 13.5 66 160-225 264-336 (419)
229 PRK07818 dihydrolipoamide dehy 98.8 3.2E-08 6.9E-13 89.4 10.3 34 58-91 4-37 (466)
230 PRK13512 coenzyme A disulfide 98.8 4.7E-08 1E-12 87.5 10.8 112 59-215 2-118 (438)
231 PTZ00052 thioredoxin reductase 98.8 2.2E-08 4.9E-13 90.9 8.8 33 58-90 5-37 (499)
232 KOG2665 Predicted FAD-dependen 98.8 4.5E-08 9.7E-13 80.3 9.3 166 56-223 46-267 (453)
233 PRK14989 nitrite reductase sub 98.8 1.1E-07 2.4E-12 91.0 13.4 108 58-222 145-255 (847)
234 TIGR02374 nitri_red_nirB nitri 98.8 1E-07 2.2E-12 91.0 13.2 99 58-214 140-238 (785)
235 KOG1335 Dihydrolipoamide dehyd 98.8 6E-08 1.3E-12 81.6 10.0 37 57-93 38-74 (506)
236 PLN02507 glutathione reductase 98.8 9.5E-08 2.1E-12 86.8 11.8 100 58-216 203-302 (499)
237 PRK05976 dihydrolipoamide dehy 98.8 8.9E-08 1.9E-12 86.6 11.5 101 58-216 180-283 (472)
238 PRK07846 mycothione reductase; 98.8 1E-07 2.2E-12 85.6 11.8 99 58-216 166-264 (451)
239 KOG0685 Flavin-containing amin 98.7 9.5E-08 2E-12 82.7 10.8 37 58-94 21-58 (498)
240 PRK07845 flavoprotein disulfid 98.7 1E-07 2.2E-12 86.0 11.7 99 59-216 178-276 (466)
241 COG3573 Predicted oxidoreducta 98.7 1.4E-07 3.1E-12 78.1 11.3 43 57-99 4-46 (552)
242 PLN02546 glutathione reductase 98.7 2.9E-07 6.3E-12 84.3 14.6 33 57-89 78-110 (558)
243 TIGR01423 trypano_reduc trypan 98.7 3.8E-08 8.1E-13 88.9 8.7 34 57-90 2-36 (486)
244 TIGR01424 gluta_reduc_2 glutat 98.7 1.2E-07 2.5E-12 85.2 11.7 100 58-216 166-265 (446)
245 PRK07251 pyridine nucleotide-d 98.7 1.1E-07 2.4E-12 85.3 11.5 98 58-215 157-254 (438)
246 TIGR02053 MerA mercuric reduct 98.7 6.4E-08 1.4E-12 87.4 10.1 33 59-91 1-33 (463)
247 COG2509 Uncharacterized FAD-de 98.7 4.2E-07 9.1E-12 78.4 14.2 56 160-215 174-231 (486)
248 TIGR01423 trypano_reduc trypan 98.7 1.4E-07 3E-12 85.3 11.6 101 58-216 187-290 (486)
249 PLN02852 ferredoxin-NADP+ redu 98.7 3.7E-08 8E-13 88.3 7.8 37 57-93 25-63 (491)
250 PRK12778 putative bifunctional 98.7 3.3E-08 7E-13 94.3 7.8 37 57-93 430-466 (752)
251 TIGR03169 Nterm_to_SelD pyridi 98.7 4.4E-08 9.6E-13 85.7 8.1 102 60-215 1-108 (364)
252 PRK07818 dihydrolipoamide dehy 98.7 1.5E-07 3.2E-12 85.1 11.6 100 58-216 172-275 (466)
253 PRK04965 NADH:flavorubredoxin 98.7 7.5E-08 1.6E-12 84.6 9.4 104 59-215 3-112 (377)
254 PRK12775 putative trifunctiona 98.7 3.1E-08 6.6E-13 96.5 7.2 37 57-93 429-465 (1006)
255 PRK11749 dihydropyrimidine deh 98.7 3.8E-08 8.3E-13 88.6 7.3 38 56-93 138-175 (457)
256 PTZ00153 lipoamide dehydrogena 98.7 2.5E-07 5.4E-12 86.0 12.5 43 57-101 115-158 (659)
257 PRK05329 anaerobic glycerol-3- 98.7 2E-07 4.4E-12 82.2 11.3 55 160-214 260-318 (422)
258 TIGR02053 MerA mercuric reduct 98.7 1.8E-07 4E-12 84.4 11.3 100 58-216 166-268 (463)
259 PTZ00318 NADH dehydrogenase-li 98.7 9.5E-08 2.1E-12 85.2 9.3 37 57-93 9-45 (424)
260 PF13434 K_oxygenase: L-lysine 98.7 1E-07 2.2E-12 82.1 8.9 151 58-220 2-165 (341)
261 PRK06115 dihydrolipoamide dehy 98.7 2.6E-07 5.6E-12 83.4 12.0 99 58-215 174-277 (466)
262 TIGR01316 gltA glutamate synth 98.7 6.3E-08 1.4E-12 86.9 7.8 38 56-93 131-168 (449)
263 PRK06370 mercuric reductase; V 98.7 2.5E-07 5.5E-12 83.5 11.8 100 58-216 171-273 (463)
264 TIGR03452 mycothione_red mycot 98.7 3E-07 6.4E-12 82.7 12.0 98 58-215 169-266 (452)
265 KOG0042 Glycerol-3-phosphate d 98.7 2.2E-07 4.8E-12 81.5 10.6 55 56-110 65-120 (680)
266 PRK06912 acoL dihydrolipoamide 98.7 2.7E-07 5.8E-12 83.2 11.6 100 58-216 170-270 (458)
267 TIGR03197 MnmC_Cterm tRNA U-34 98.7 1.2E-06 2.6E-11 77.2 15.2 61 154-215 130-191 (381)
268 TIGR02374 nitri_red_nirB nitri 98.6 8.4E-08 1.8E-12 91.6 8.4 106 61-215 1-109 (785)
269 PRK06912 acoL dihydrolipoamide 98.6 2E-07 4.2E-12 84.1 10.2 32 60-91 2-33 (458)
270 PRK07845 flavoprotein disulfid 98.6 3.8E-07 8.2E-12 82.4 12.0 33 59-91 2-34 (466)
271 PRK06327 dihydrolipoamide dehy 98.6 3E-07 6.5E-12 83.3 11.3 100 58-216 183-286 (475)
272 PRK13512 coenzyme A disulfide 98.6 2.6E-07 5.5E-12 82.8 10.8 94 58-214 148-241 (438)
273 PTZ00058 glutathione reductase 98.6 3.8E-07 8.2E-12 83.6 12.0 100 58-215 237-337 (561)
274 PRK08010 pyridine nucleotide-d 98.6 3.5E-07 7.7E-12 82.1 11.5 99 58-216 158-256 (441)
275 TIGR01438 TGR thioredoxin and 98.6 4.1E-07 9E-12 82.3 11.9 33 58-90 2-34 (484)
276 PRK12770 putative glutamate sy 98.6 1.4E-07 3E-12 82.1 8.5 37 57-93 17-53 (352)
277 PRK14989 nitrite reductase sub 98.6 1.9E-07 4.1E-12 89.5 10.0 109 58-216 3-115 (847)
278 TIGR03385 CoA_CoA_reduc CoA-di 98.6 5.3E-07 1.1E-11 80.6 11.6 98 58-215 137-234 (427)
279 PTZ00052 thioredoxin reductase 98.6 6.3E-07 1.4E-11 81.5 12.2 98 59-216 183-280 (499)
280 PRK06467 dihydrolipoamide dehy 98.6 4.8E-07 1E-11 81.8 11.1 99 58-216 174-276 (471)
281 PLN02546 glutathione reductase 98.6 5.4E-07 1.2E-11 82.6 11.4 101 58-216 252-352 (558)
282 COG1252 Ndh NADH dehydrogenase 98.6 2.1E-07 4.5E-12 80.8 8.2 125 32-219 122-268 (405)
283 PRK12769 putative oxidoreducta 98.6 1.5E-07 3.2E-12 88.5 7.8 37 57-93 326-362 (654)
284 PRK07208 hypothetical protein; 98.6 1.2E-07 2.5E-12 86.1 6.4 38 57-94 3-40 (479)
285 PTZ00318 NADH dehydrogenase-li 98.6 6.4E-07 1.4E-11 79.9 10.9 93 59-214 174-280 (424)
286 PRK12810 gltD glutamate syntha 98.6 1.2E-07 2.7E-12 85.5 6.4 37 57-93 142-178 (471)
287 COG0446 HcaD Uncharacterized N 98.5 6.3E-07 1.4E-11 79.5 10.7 98 58-214 136-237 (415)
288 PRK14694 putative mercuric red 98.5 1.1E-06 2.5E-11 79.3 12.3 98 58-216 178-275 (468)
289 PRK14727 putative mercuric red 98.5 1E-06 2.2E-11 79.8 11.8 98 58-216 188-285 (479)
290 PRK09564 coenzyme A disulfide 98.5 1E-06 2.3E-11 79.1 11.6 98 58-214 149-246 (444)
291 PRK10262 thioredoxin reductase 98.5 1.1E-06 2.5E-11 75.4 11.3 96 58-215 146-249 (321)
292 TIGR01438 TGR thioredoxin and 98.5 9.2E-07 2E-11 80.1 11.1 98 59-216 181-281 (484)
293 COG4529 Uncharacterized protei 98.5 2.9E-07 6.4E-12 80.3 7.5 36 58-93 1-39 (474)
294 TIGR03140 AhpF alkyl hydropero 98.5 9E-07 1.9E-11 80.9 11.1 94 58-214 352-450 (515)
295 PRK12814 putative NADPH-depend 98.5 1.6E-07 3.5E-12 87.9 6.3 37 57-93 192-228 (652)
296 TIGR01318 gltD_gamma_fam gluta 98.5 2.6E-07 5.6E-12 83.3 7.3 37 57-93 140-176 (467)
297 COG1252 Ndh NADH dehydrogenase 98.5 5E-07 1.1E-11 78.5 8.6 106 57-215 2-112 (405)
298 COG3349 Uncharacterized conser 98.5 1.7E-07 3.7E-12 82.4 5.2 37 59-95 1-37 (485)
299 TIGR02733 desat_CrtD C-3',4' d 98.5 2E-07 4.3E-12 84.9 5.8 36 59-94 2-37 (492)
300 PRK13748 putative mercuric red 98.5 1.7E-06 3.8E-11 80.0 11.9 98 58-216 270-367 (561)
301 TIGR03452 mycothione_red mycot 98.5 1.6E-06 3.6E-11 77.9 11.3 32 58-91 2-33 (452)
302 KOG1336 Monodehydroascorbate/f 98.5 2.2E-06 4.9E-11 74.4 11.4 121 32-215 193-314 (478)
303 PRK06292 dihydrolipoamide dehy 98.5 2.4E-06 5.1E-11 77.2 12.1 100 58-216 169-270 (460)
304 PRK07846 mycothione reductase; 98.5 9.7E-07 2.1E-11 79.3 9.4 32 58-91 1-32 (451)
305 TIGR00031 UDP-GALP_mutase UDP- 98.4 3.3E-07 7.2E-12 79.6 5.9 36 58-93 1-36 (377)
306 PTZ00153 lipoamide dehydrogena 98.4 1.9E-06 4.1E-11 80.3 11.2 102 58-216 312-429 (659)
307 PRK12809 putative oxidoreducta 98.4 4.8E-07 1E-11 84.7 7.1 37 57-93 309-345 (639)
308 TIGR01317 GOGAT_sm_gam glutama 98.4 5.9E-07 1.3E-11 81.4 7.3 37 57-93 142-178 (485)
309 TIGR02732 zeta_caro_desat caro 98.4 5.5E-07 1.2E-11 81.3 6.7 60 60-119 1-76 (474)
310 KOG0404 Thioredoxin reductase 98.4 3E-06 6.6E-11 66.4 9.7 114 58-215 8-125 (322)
311 COG1148 HdrA Heterodisulfide r 98.4 7.6E-07 1.6E-11 77.3 6.6 36 58-93 124-159 (622)
312 PLN02487 zeta-carotene desatur 98.4 8.3E-07 1.8E-11 81.3 7.1 63 58-120 75-153 (569)
313 PRK12771 putative glutamate sy 98.4 9.4E-07 2E-11 81.7 7.1 37 57-93 136-172 (564)
314 KOG4254 Phytoene desaturase [C 98.4 2E-06 4.2E-11 74.2 8.2 61 160-220 265-327 (561)
315 PRK15317 alkyl hydroperoxide r 98.3 5.3E-06 1.2E-10 75.9 11.7 94 58-214 351-449 (517)
316 TIGR01292 TRX_reduct thioredox 98.3 6.5E-06 1.4E-10 69.8 11.5 94 58-215 141-239 (300)
317 COG1251 NirB NAD(P)H-nitrite r 98.3 1.6E-06 3.4E-11 79.1 7.3 122 29-214 122-243 (793)
318 PRK13984 putative oxidoreducta 98.3 1E-06 2.2E-11 82.3 6.1 38 56-93 281-318 (604)
319 COG0562 Glf UDP-galactopyranos 98.3 1E-06 2.2E-11 72.8 5.2 37 58-94 1-37 (374)
320 KOG2960 Protein involved in th 98.3 5.4E-07 1.2E-11 70.0 2.9 37 58-94 76-114 (328)
321 TIGR01316 gltA glutamate synth 98.3 1.2E-05 2.6E-10 72.3 11.7 34 58-91 272-305 (449)
322 PF00732 GMC_oxred_N: GMC oxid 98.2 9.2E-07 2E-11 75.0 4.0 34 59-92 1-35 (296)
323 TIGR03169 Nterm_to_SelD pyridi 98.2 1.4E-05 3.1E-10 69.9 10.6 93 58-214 145-243 (364)
324 PRK11749 dihydropyrimidine deh 98.2 1.3E-05 2.9E-10 72.2 9.9 34 58-91 273-307 (457)
325 PRK06567 putative bifunctional 98.1 2.5E-06 5.3E-11 81.4 5.0 36 56-91 381-416 (1028)
326 PRK12770 putative glutamate sy 98.1 2.8E-05 6.1E-10 67.7 10.9 33 59-91 173-206 (352)
327 PLN02529 lysine-specific histo 98.1 4.7E-06 1E-10 78.3 6.3 37 57-93 159-195 (738)
328 PRK12831 putative oxidoreducta 98.1 2.7E-05 5.8E-10 70.3 10.7 34 58-91 281-314 (464)
329 COG3075 GlpB Anaerobic glycero 98.1 3.9E-06 8.4E-11 69.6 4.8 36 57-92 1-36 (421)
330 PLN02328 lysine-specific histo 98.1 4.7E-06 1E-10 78.8 5.7 38 57-94 237-274 (808)
331 PF13434 K_oxygenase: L-lysine 98.1 8.3E-06 1.8E-10 70.3 6.9 133 56-212 188-339 (341)
332 PRK02106 choline dehydrogenase 98.1 4.2E-06 9E-11 77.4 5.1 35 57-91 4-39 (560)
333 KOG1276 Protoporphyrinogen oxi 98.1 7.8E-06 1.7E-10 70.2 6.2 65 57-121 10-95 (491)
334 PTZ00188 adrenodoxin reductase 98.1 6.8E-06 1.5E-10 73.1 5.7 38 57-94 38-76 (506)
335 TIGR03377 glycerol3P_GlpA glyc 98.0 4.7E-05 1E-09 69.8 11.1 73 154-226 123-203 (516)
336 TIGR02462 pyranose_ox pyranose 98.0 6.6E-06 1.4E-10 74.8 5.1 36 59-94 1-36 (544)
337 TIGR02352 thiamin_ThiO glycine 98.0 0.00025 5.4E-09 61.2 14.7 62 154-216 132-195 (337)
338 PF01593 Amino_oxidase: Flavin 98.0 2.7E-05 5.8E-10 69.3 8.5 46 171-217 223-268 (450)
339 TIGR03143 AhpF_homolog putativ 98.0 8.6E-05 1.9E-09 68.6 11.5 35 58-92 143-177 (555)
340 KOG0399 Glutamate synthase [Am 98.0 1.2E-05 2.6E-10 76.4 5.5 37 57-93 1784-1820(2142)
341 KOG4716 Thioredoxin reductase 98.0 0.00059 1.3E-08 57.2 14.7 35 56-90 17-51 (503)
342 KOG1238 Glucose dehydrogenase/ 97.9 5.8E-05 1.3E-09 68.4 9.2 38 56-93 55-93 (623)
343 KOG3851 Sulfide:quinone oxidor 97.9 1E-05 2.2E-10 66.9 3.9 107 57-215 38-146 (446)
344 PRK12810 gltD glutamate syntha 97.9 0.00015 3.3E-09 65.7 11.5 34 58-91 281-315 (471)
345 PF00996 GDI: GDP dissociation 97.9 8.8E-05 1.9E-09 65.6 9.1 39 56-94 2-40 (438)
346 KOG1346 Programmed cell death 97.9 4.1E-05 8.8E-10 65.6 6.7 64 159-223 393-460 (659)
347 PLN03000 amine oxidase 97.9 2.4E-05 5.2E-10 74.3 5.8 38 57-94 183-220 (881)
348 COG2303 BetA Choline dehydroge 97.9 1.4E-05 3.1E-10 73.3 4.3 36 56-91 5-40 (542)
349 COG3486 IucD Lysine/ornithine 97.9 0.00011 2.4E-09 62.9 9.3 154 56-220 3-163 (436)
350 PRK12778 putative bifunctional 97.8 0.00012 2.7E-09 70.1 10.4 34 58-91 570-604 (752)
351 PLN02785 Protein HOTHEAD 97.8 2.4E-05 5.2E-10 72.3 5.2 36 56-92 53-88 (587)
352 TIGR03862 flavo_PP4765 unchara 97.8 0.00015 3.2E-09 63.1 9.6 75 156-233 83-172 (376)
353 PF08491 SE: Squalene epoxidas 97.8 0.00032 6.8E-09 57.8 10.9 75 203-279 2-76 (276)
354 TIGR01810 betA choline dehydro 97.7 2.5E-05 5.4E-10 71.9 4.0 33 60-92 1-34 (532)
355 COG0493 GltD NADPH-dependent g 97.7 3.2E-05 7E-10 68.9 4.4 36 58-93 123-158 (457)
356 PLN02976 amine oxidase 97.7 5.4E-05 1.2E-09 74.8 6.1 37 57-93 692-728 (1713)
357 PLN02172 flavin-containing mon 97.7 0.00012 2.7E-09 65.8 7.7 34 58-91 204-237 (461)
358 PRK12779 putative bifunctional 97.7 0.00042 9E-09 67.6 11.2 34 58-91 447-480 (944)
359 PRK12814 putative NADPH-depend 97.7 0.00057 1.2E-08 64.4 11.6 35 57-91 322-357 (652)
360 TIGR01372 soxA sarcosine oxida 97.7 0.00048 1E-08 67.9 11.4 97 58-221 317-420 (985)
361 TIGR01318 gltD_gamma_fam gluta 97.6 0.00044 9.6E-09 62.5 10.3 35 58-92 282-317 (467)
362 KOG1336 Monodehydroascorbate/f 97.6 0.00036 7.8E-09 61.1 8.9 39 171-212 141-179 (478)
363 PRK12769 putative oxidoreducta 97.6 0.00069 1.5E-08 64.0 10.9 35 58-92 468-503 (654)
364 KOG0405 Pyridine nucleotide-di 97.6 0.00013 2.9E-09 61.2 5.2 39 55-93 17-55 (478)
365 PRK09853 putative selenate red 97.5 0.0011 2.3E-08 64.5 11.3 34 58-91 668-703 (1019)
366 PRK13984 putative oxidoreducta 97.5 0.0009 2E-08 62.7 10.6 31 58-88 418-454 (604)
367 COG1206 Gid NAD(FAD)-utilizing 97.5 0.00011 2.4E-09 61.2 3.9 35 58-92 3-37 (439)
368 KOG2495 NADH-dehydrogenase (ub 97.4 0.0004 8.8E-09 59.9 6.5 95 59-214 219-329 (491)
369 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00023 4.9E-09 60.5 4.8 37 58-94 20-58 (468)
370 PRK05675 sdhA succinate dehydr 97.4 0.0018 3.8E-08 60.2 10.8 59 158-216 125-191 (570)
371 PF06100 Strep_67kDa_ant: Stre 97.4 0.0019 4.1E-08 57.4 10.2 36 58-93 2-41 (500)
372 KOG2755 Oxidoreductase [Genera 97.3 0.00015 3.2E-09 58.5 2.8 33 61-93 2-36 (334)
373 COG0492 TrxB Thioredoxin reduc 97.3 0.0032 6.9E-08 53.4 10.8 93 58-215 143-239 (305)
374 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0032 6.9E-08 58.3 10.3 110 58-216 3-115 (793)
375 TIGR03315 Se_ygfK putative sel 97.2 0.004 8.6E-08 60.9 11.5 35 57-91 665-701 (1012)
376 PRK12775 putative trifunctiona 97.2 0.003 6.5E-08 62.3 10.6 35 57-91 570-605 (1006)
377 PRK12809 putative oxidoreducta 97.2 0.0032 6.9E-08 59.3 10.5 35 58-92 451-486 (639)
378 COG3634 AhpF Alkyl hydroperoxi 97.0 0.0026 5.6E-08 53.7 7.2 77 58-197 354-430 (520)
379 KOG0405 Pyridine nucleotide-di 97.0 0.0016 3.4E-08 54.9 5.8 99 57-213 188-286 (478)
380 PF01210 NAD_Gly3P_dh_N: NAD-d 97.0 0.001 2.2E-08 50.8 4.2 32 60-91 1-32 (157)
381 COG0446 HcaD Uncharacterized N 97.0 0.0039 8.5E-08 55.2 8.4 42 171-216 67-108 (415)
382 TIGR01317 GOGAT_sm_gam glutama 97.0 0.012 2.5E-07 53.7 11.4 36 58-93 283-319 (485)
383 PF03721 UDPG_MGDP_dh_N: UDP-g 96.9 0.00083 1.8E-08 52.7 3.3 33 60-92 2-34 (185)
384 PF00743 FMO-like: Flavin-bind 96.9 0.0022 4.8E-08 58.8 6.5 36 57-92 182-217 (531)
385 PF02737 3HCDH_N: 3-hydroxyacy 96.9 0.0012 2.5E-08 51.7 4.1 33 60-92 1-33 (180)
386 KOG2495 NADH-dehydrogenase (ub 96.9 0.0075 1.6E-07 52.4 9.0 39 54-92 51-89 (491)
387 PRK12771 putative glutamate sy 96.9 0.01 2.2E-07 55.2 10.4 34 58-91 267-301 (564)
388 PF02558 ApbA: Ketopantoate re 96.8 0.0025 5.4E-08 48.2 4.8 31 61-91 1-31 (151)
389 COG0569 TrkA K+ transport syst 96.7 0.0023 4.9E-08 51.9 4.5 57 60-116 2-65 (225)
390 PRK01438 murD UDP-N-acetylmura 96.7 0.0025 5.5E-08 58.0 5.1 34 58-91 16-49 (480)
391 PRK06249 2-dehydropantoate 2-r 96.5 0.0044 9.6E-08 53.0 5.2 34 58-91 5-38 (313)
392 PRK02705 murD UDP-N-acetylmura 96.5 0.0034 7.3E-08 56.8 4.7 34 60-93 2-35 (459)
393 PRK06129 3-hydroxyacyl-CoA deh 96.5 0.004 8.7E-08 53.1 4.6 33 60-92 4-36 (308)
394 COG3486 IucD Lysine/ornithine 96.4 0.013 2.8E-07 50.7 7.1 48 170-217 291-343 (436)
395 PRK05708 2-dehydropantoate 2-r 96.4 0.0055 1.2E-07 52.2 5.0 33 59-91 3-35 (305)
396 COG1004 Ugd Predicted UDP-gluc 96.4 0.0045 9.8E-08 53.3 4.3 33 60-92 2-34 (414)
397 KOG1439 RAB proteins geranylge 96.4 0.14 3E-06 44.4 12.9 38 57-94 3-40 (440)
398 KOG3923 D-aspartate oxidase [A 96.3 0.0054 1.2E-07 50.7 4.1 36 58-93 3-45 (342)
399 PRK07819 3-hydroxybutyryl-CoA 96.3 0.0065 1.4E-07 51.2 4.7 35 59-93 6-40 (286)
400 PLN02852 ferredoxin-NADP+ redu 96.3 0.093 2E-06 47.7 12.2 23 58-80 166-188 (491)
401 PRK07066 3-hydroxybutyryl-CoA 96.2 0.008 1.7E-07 51.4 5.0 34 59-92 8-41 (321)
402 PF00899 ThiF: ThiF family; I 96.2 0.0089 1.9E-07 44.3 4.7 34 58-91 2-36 (135)
403 PRK08293 3-hydroxybutyryl-CoA 96.2 0.007 1.5E-07 51.1 4.5 34 59-92 4-37 (287)
404 TIGR02354 thiF_fam2 thiamine b 96.2 0.0095 2.1E-07 47.4 4.8 35 57-91 20-55 (200)
405 PRK09260 3-hydroxybutyryl-CoA 96.1 0.0076 1.6E-07 50.9 4.4 33 60-92 3-35 (288)
406 PRK06719 precorrin-2 dehydroge 96.1 0.011 2.5E-07 44.9 4.9 32 57-88 12-43 (157)
407 PRK15116 sulfur acceptor prote 96.1 0.011 2.5E-07 48.9 5.0 36 57-92 29-65 (268)
408 PRK07530 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 50.3 4.8 34 59-92 5-38 (292)
409 PRK12921 2-dehydropantoate 2-r 96.0 0.0095 2.1E-07 50.7 4.7 30 60-89 2-31 (305)
410 TIGR01470 cysG_Nterm siroheme 96.0 0.014 3E-07 46.6 5.2 34 58-91 9-42 (205)
411 PRK14106 murD UDP-N-acetylmura 96.0 0.01 2.2E-07 53.5 5.0 34 58-91 5-38 (450)
412 PF13738 Pyr_redox_3: Pyridine 96.0 0.0088 1.9E-07 47.5 4.1 35 57-91 166-200 (203)
413 PF01262 AlaDh_PNT_C: Alanine 96.0 0.013 2.9E-07 45.2 4.9 35 57-91 19-53 (168)
414 PRK06522 2-dehydropantoate 2-r 96.0 0.011 2.3E-07 50.4 4.7 32 60-91 2-33 (304)
415 PRK06035 3-hydroxyacyl-CoA deh 95.9 0.0098 2.1E-07 50.4 4.3 34 59-92 4-37 (291)
416 KOG1346 Programmed cell death 95.9 0.037 8E-07 48.1 7.6 139 56-219 176-316 (659)
417 PRK08229 2-dehydropantoate 2-r 95.9 0.013 2.8E-07 50.9 4.9 33 59-91 3-35 (341)
418 PRK06718 precorrin-2 dehydroge 95.9 0.016 3.4E-07 46.2 5.0 34 57-90 9-42 (202)
419 KOG4716 Thioredoxin reductase 95.9 0.014 3.1E-07 49.2 4.8 100 59-217 199-303 (503)
420 PRK06567 putative bifunctional 95.9 0.088 1.9E-06 51.3 10.7 34 58-91 550-586 (1028)
421 PRK05808 3-hydroxybutyryl-CoA 95.9 0.011 2.4E-07 49.7 4.3 34 59-92 4-37 (282)
422 PRK09424 pntA NAD(P) transhydr 95.9 0.013 2.7E-07 53.2 4.7 36 57-92 164-199 (509)
423 PF13241 NAD_binding_7: Putati 95.8 0.0082 1.8E-07 42.2 2.8 35 57-91 6-40 (103)
424 cd05292 LDH_2 A subgroup of L- 95.8 0.016 3.4E-07 49.5 4.8 33 60-92 2-36 (308)
425 KOG0404 Thioredoxin reductase 95.7 0.078 1.7E-06 42.3 8.1 37 57-93 156-192 (322)
426 PRK11064 wecC UDP-N-acetyl-D-m 95.7 0.014 3.1E-07 52.0 4.6 34 59-92 4-37 (415)
427 TIGR01763 MalateDH_bact malate 95.7 0.019 4.2E-07 48.8 5.1 34 59-92 2-36 (305)
428 PRK04148 hypothetical protein; 95.7 0.019 4.1E-07 42.2 4.2 34 58-92 17-50 (134)
429 PF01488 Shikimate_DH: Shikima 95.6 0.03 6.6E-07 41.5 5.4 35 57-91 11-46 (135)
430 PF02254 TrkA_N: TrkA-N domain 95.6 0.021 4.6E-07 40.9 4.3 32 61-92 1-32 (116)
431 PRK12475 thiamine/molybdopteri 95.6 0.021 4.6E-07 49.2 4.9 34 58-91 24-58 (338)
432 PRK06130 3-hydroxybutyryl-CoA 95.5 0.022 4.8E-07 48.7 5.0 33 59-91 5-37 (311)
433 PF00056 Ldh_1_N: lactate/mala 95.5 0.03 6.4E-07 41.8 5.0 33 60-92 2-37 (141)
434 TIGR00518 alaDH alanine dehydr 95.5 0.023 5E-07 49.8 5.0 35 57-91 166-200 (370)
435 TIGR03385 CoA_CoA_reduc CoA-di 95.5 0.094 2E-06 47.0 9.1 44 171-215 58-104 (427)
436 PRK00066 ldh L-lactate dehydro 95.5 0.029 6.2E-07 48.0 5.4 36 57-92 5-42 (315)
437 PF13478 XdhC_C: XdhC Rossmann 95.5 0.019 4.1E-07 42.5 3.7 33 61-93 1-33 (136)
438 PRK07688 thiamine/molybdopteri 95.4 0.026 5.7E-07 48.7 5.0 35 57-91 23-58 (339)
439 PLN02545 3-hydroxybutyryl-CoA 95.4 0.024 5.2E-07 48.1 4.8 34 59-92 5-38 (295)
440 cd01487 E1_ThiF_like E1_ThiF_l 95.4 0.029 6.4E-07 43.5 4.8 32 60-91 1-33 (174)
441 PRK08644 thiamine biosynthesis 95.4 0.03 6.4E-07 45.0 5.0 35 57-91 27-62 (212)
442 cd01080 NAD_bind_m-THF_DH_Cycl 95.4 0.045 9.8E-07 42.1 5.7 36 56-91 42-78 (168)
443 TIGR03026 NDP-sugDHase nucleot 95.4 0.019 4.1E-07 51.2 4.2 33 60-92 2-34 (411)
444 cd00401 AdoHcyase S-adenosyl-L 95.3 0.025 5.4E-07 50.0 4.6 35 58-92 202-236 (413)
445 TIGR02355 moeB molybdopterin s 95.3 0.031 6.7E-07 45.8 4.9 34 58-91 24-58 (240)
446 TIGR02356 adenyl_thiF thiazole 95.3 0.033 7.2E-07 44.4 4.9 35 57-91 20-55 (202)
447 cd01483 E1_enzyme_family Super 95.3 0.033 7.2E-07 41.6 4.7 32 60-91 1-33 (143)
448 PRK14620 NAD(P)H-dependent gly 95.3 0.027 5.9E-07 48.5 4.7 32 60-91 2-33 (326)
449 COG5044 MRS6 RAB proteins gera 95.3 0.035 7.6E-07 47.4 5.1 39 57-95 5-43 (434)
450 PTZ00082 L-lactate dehydrogena 95.3 0.037 8.1E-07 47.4 5.4 36 58-93 6-42 (321)
451 PRK05690 molybdopterin biosynt 95.3 0.033 7.1E-07 45.8 4.9 35 57-91 31-66 (245)
452 PRK08328 hypothetical protein; 95.2 0.036 7.8E-07 45.2 4.8 35 57-91 26-61 (231)
453 PLN02353 probable UDP-glucose 95.2 0.028 6.1E-07 50.7 4.6 34 59-92 2-37 (473)
454 PRK06223 malate dehydrogenase; 95.2 0.037 8E-07 47.2 5.1 34 59-92 3-37 (307)
455 PRK00094 gpsA NAD(P)H-dependen 95.2 0.03 6.5E-07 48.1 4.6 32 60-91 3-34 (325)
456 PRK14619 NAD(P)H-dependent gly 95.1 0.04 8.7E-07 47.0 5.2 35 58-92 4-38 (308)
457 cd05293 LDH_1 A subgroup of L- 95.1 0.042 9.2E-07 46.9 5.2 35 58-92 3-39 (312)
458 cd00757 ThiF_MoeB_HesA_family 95.1 0.041 8.9E-07 44.8 4.8 35 57-91 20-55 (228)
459 PRK14618 NAD(P)H-dependent gly 95.0 0.044 9.6E-07 47.2 5.1 33 59-91 5-37 (328)
460 PRK07417 arogenate dehydrogena 95.0 0.031 6.7E-07 47.0 4.0 32 60-91 2-33 (279)
461 KOG2304 3-hydroxyacyl-CoA dehy 95.0 0.03 6.5E-07 44.5 3.5 36 57-92 10-45 (298)
462 PRK08268 3-hydroxy-acyl-CoA de 94.9 0.039 8.5E-07 50.5 4.8 35 58-92 7-41 (507)
463 COG1748 LYS9 Saccharopine dehy 94.9 0.042 9E-07 48.0 4.7 33 59-91 2-35 (389)
464 COG0686 Ald Alanine dehydrogen 94.9 0.031 6.6E-07 46.7 3.6 35 57-91 167-201 (371)
465 cd01485 E1-1_like Ubiquitin ac 94.9 0.05 1.1E-06 43.2 4.7 34 58-91 19-53 (198)
466 PRK07531 bifunctional 3-hydrox 94.9 0.042 9.1E-07 50.2 4.9 34 59-92 5-38 (495)
467 KOG4405 GDP dissociation inhib 94.9 0.043 9.3E-07 47.5 4.5 48 56-103 6-53 (547)
468 COG1893 ApbA Ketopantoate redu 94.9 0.037 7.9E-07 47.2 4.2 33 60-92 2-34 (307)
469 cd00755 YgdL_like Family of ac 94.9 0.051 1.1E-06 44.2 4.8 34 58-91 11-45 (231)
470 cd01492 Aos1_SUMO Ubiquitin ac 94.8 0.048 1E-06 43.3 4.5 35 57-91 20-55 (197)
471 cd05291 HicDH_like L-2-hydroxy 94.8 0.049 1.1E-06 46.5 4.7 33 60-92 2-36 (306)
472 TIGR03736 PRTRC_ThiF PRTRC sys 94.8 0.053 1.1E-06 44.3 4.7 35 57-91 10-55 (244)
473 PF03446 NAD_binding_2: NAD bi 94.8 0.057 1.2E-06 41.4 4.7 34 59-92 2-35 (163)
474 PRK08223 hypothetical protein; 94.7 0.058 1.3E-06 45.1 4.9 35 57-91 26-61 (287)
475 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.7 0.042 9E-07 50.2 4.4 35 58-92 5-39 (503)
476 cd01339 LDH-like_MDH L-lactate 94.7 0.044 9.6E-07 46.6 4.3 32 61-92 1-33 (300)
477 PRK12549 shikimate 5-dehydroge 94.7 0.056 1.2E-06 45.6 4.9 34 58-91 127-161 (284)
478 cd05311 NAD_bind_2_malic_enz N 94.7 0.059 1.3E-06 43.7 4.8 35 57-91 24-61 (226)
479 PRK15057 UDP-glucose 6-dehydro 94.7 0.042 9.1E-07 48.4 4.2 32 60-92 2-33 (388)
480 cd05290 LDH_3 A subgroup of L- 94.6 0.061 1.3E-06 45.8 4.9 33 60-92 1-35 (307)
481 cd01484 E1-2_like Ubiquitin ac 94.5 0.067 1.5E-06 43.6 4.8 32 60-91 1-33 (234)
482 PRK11730 fadB multifunctional 94.5 0.043 9.3E-07 52.4 4.2 34 59-92 314-347 (715)
483 PRK07502 cyclohexadienyl dehyd 94.5 0.054 1.2E-06 46.2 4.4 33 59-91 7-41 (307)
484 TIGR02964 xanthine_xdhC xanthi 94.5 0.072 1.6E-06 43.8 4.9 36 57-92 99-134 (246)
485 TIGR00936 ahcY adenosylhomocys 94.4 0.059 1.3E-06 47.5 4.6 36 57-92 194-229 (406)
486 cd01075 NAD_bind_Leu_Phe_Val_D 94.4 0.081 1.8E-06 42.1 4.9 34 58-91 28-61 (200)
487 TIGR02437 FadB fatty oxidation 94.3 0.059 1.3E-06 51.4 4.6 35 59-93 314-348 (714)
488 PRK08306 dipicolinate synthase 94.3 0.082 1.8E-06 44.8 5.0 35 57-91 151-185 (296)
489 TIGR00561 pntA NAD(P) transhyd 94.3 0.059 1.3E-06 48.9 4.3 35 58-92 164-198 (511)
490 PTZ00117 malate dehydrogenase; 94.3 0.088 1.9E-06 45.2 5.2 35 58-92 5-40 (319)
491 TIGR01915 npdG NADPH-dependent 94.2 0.083 1.8E-06 42.7 4.6 32 60-91 2-34 (219)
492 cd01488 Uba3_RUB Ubiquitin act 94.1 0.087 1.9E-06 44.3 4.7 32 60-91 1-33 (291)
493 COG1063 Tdh Threonine dehydrog 94.1 0.072 1.6E-06 46.4 4.4 33 60-92 171-204 (350)
494 PRK04308 murD UDP-N-acetylmura 94.1 0.1 2.2E-06 47.1 5.5 35 58-92 5-39 (445)
495 cd01486 Apg7 Apg7 is an E1-lik 94.1 0.088 1.9E-06 44.2 4.6 32 60-91 1-33 (307)
496 cd01489 Uba2_SUMO Ubiquitin ac 94.0 0.083 1.8E-06 44.9 4.5 32 60-91 1-33 (312)
497 cd05191 NAD_bind_amino_acid_DH 94.0 0.14 2.9E-06 34.6 4.8 33 57-89 22-55 (86)
498 PRK05597 molybdopterin biosynt 94.0 0.091 2E-06 45.8 4.8 35 57-91 27-62 (355)
499 PRK02472 murD UDP-N-acetylmura 94.0 0.089 1.9E-06 47.4 5.0 34 58-91 5-38 (447)
500 TIGR02441 fa_ox_alpha_mit fatt 94.0 0.065 1.4E-06 51.3 4.1 34 59-92 336-369 (737)
No 1
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=209.41 Aligned_cols=214 Identities=23% Similarity=0.374 Sum_probs=173.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.||+|||||++|+++|+.|+++|++|+|+||.+.+...+.++.+.+++.+.|+.+|+++.+.........+.+.+.++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 37999999999999999999999999999999988778899999999999999999999888777777888888877765
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhhh
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAK 218 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~ 218 (294)
+....+. .......++|..|.+.|.+.+.+.+++++++|++++.++++ +.|.+++|+++.+|+||+|||.+|.+|+
T Consensus 81 ~~~~~~~---~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~vR~ 156 (373)
T PRK06753 81 LNKVKLK---SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKVRQ 156 (373)
T ss_pred Eeecccc---cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHHHH
Confidence 5444432 12344678999999999999877889999999999977666 5588899989999999999999999999
Q ss_pred hcCCC-CCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022652 219 WIGFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (294)
Q Consensus 219 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (294)
.++.. .+.+.++.++++....... +.......+++.+++++++|..++..+|++.+..
T Consensus 157 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~ 215 (373)
T PRK06753 157 SVNADSKVRYQGYTCFRGLIDDIDL-KLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINA 215 (373)
T ss_pred HhCCCCCceEcceEEEEEEeccccc-cCccceEEEEcCCCEEEEEEcCCCeEEEEEEecc
Confidence 99644 4556778888876654322 2222344455666677899999998888776643
No 2
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.96 E-value=2.3e-27 Score=208.15 Aligned_cols=217 Identities=26% Similarity=0.368 Sum_probs=165.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecC-CCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~-~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+||+|||||++|+++|+.|++.|++|+|+|+. ......++++.+.+++.++|+++|+.+.+................+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998 4555677999999999999999999888877666555555554444
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEec-CCCEEEcCEEEecCCC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV-NGTRIYANIVIGCDGI 212 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ad~vV~A~G~ 212 (294)
.....++............+.+.+|.+.|.+.+ ++++++++++|+.++.+++.+. +++. +|++++||+||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCC
Confidence 334444444444466678899999999999988 3589999999999999988755 7887 9999999999999999
Q ss_pred CcHhhhhcCCCCCcc--ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022652 213 RSPIAKWIGFSEPKY--VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (294)
Q Consensus 213 ~S~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (294)
+|.+|+.++...... +.+..+. .......++......++...+.+.++|+++.....+++...
T Consensus 161 ~S~vR~~~~~~~~~~~~y~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 225 (387)
T COG0654 161 NSAVRRAAGIAEFSGRDYGQTALV--ANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPP 225 (387)
T ss_pred chHHHHhcCCCCccCCCCCceEEE--EEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECCh
Confidence 999999998333332 3444443 33333345555555555555556699999655444444443
No 3
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=8.2e-27 Score=203.91 Aligned_cols=211 Identities=17% Similarity=0.189 Sum_probs=160.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC----CCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL----RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~----~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 133 (294)
.+||+|||||++|+++|+.|++.|++|+|+|+.+.. ...++++.+.+++.++|+.+|+|+.+.....+...+.+++
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 369999999999999999999999999999987432 2347899999999999999999999877666777888877
Q ss_pred CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecC
Q 022652 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (294)
.++.....++.. ......+.+.|.+|.+.|.+.+ ++++++++++++++..++++ +.|.+.++ ++++|+||+||
T Consensus 81 ~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgAD 156 (374)
T PRK06617 81 NKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICD 156 (374)
T ss_pred CCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeC
Confidence 766655444432 2233467899999999998876 35789999999999988777 45888776 89999999999
Q ss_pred CCCcHhhhhcCCCCCccccceEEEEEEeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022652 211 GIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (294)
Q Consensus 211 G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (294)
|.+|.+|+.++.......++.++.+.+... .++.+ .++++...|. ++++|++++...+++|.
T Consensus 157 G~~S~vR~~l~~~~~~~~y~~~~~~~v~~~--~~~~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~ 219 (374)
T PRK06617 157 GANSKVRSHYFANEIEKPYQTALTFNIKHE--KPHENCAMEHFLPLGP-FALLPLKDQYASSVIWS 219 (374)
T ss_pred CCCchhHHhcCCCcccccCCeEEEEEEecc--CCCCCEEEEEecCCCC-EEEeECCCCCeEEEEEe
Confidence 999999999977653333366666555432 23333 3444544554 66899998864344443
No 4
>PRK05868 hypothetical protein; Validated
Probab=99.96 E-value=2.2e-26 Score=200.73 Aligned_cols=217 Identities=20% Similarity=0.260 Sum_probs=162.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.||+|||||++|+++|+.|+++|++|+|+|+.+.+...|.++.+.+++++.|+++|+++.+.........+.+...++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 48999999999999999999999999999999988888889999999999999999999888777777777777777765
Q ss_pred EEEecCCC---CCCCcceeeeeHHHHHHHHHhcC-CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 139 LRSFGFKD---EDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 139 ~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~-~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
+....... .........+.|.+|.+.|.+.. .+++++++++|++++.++++ +.|.+.+|+++++|+||+|||.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCc
Confidence 44322111 11112244688999999887765 58999999999999877666 558999999999999999999999
Q ss_pred HhhhhcCCCCCc-cccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE-EEEEEEc
Q 022652 215 PIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV-YWFICHN 276 (294)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~ 276 (294)
.+|+.+...... ...+..++.+...+...+.+....++++.+.++.++|..++.. ..++.+.
T Consensus 161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (372)
T PRK05868 161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFM 224 (372)
T ss_pred hHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEe
Confidence 999999443322 2222334444444433333333344568888888999987543 3334333
No 5
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=1.8e-26 Score=203.22 Aligned_cols=216 Identities=22% Similarity=0.325 Sum_probs=165.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.||+|||||++|+++|+.|+++|++|+|+||.+.....+.++.+.++++++|+++|+++.+.........+.+++.++..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 37999999999999999999999999999999887777888999999999999999999998877777788888777776
Q ss_pred EEEecCCCC--CCCcceeeeeHHHHHHHHHhcCC-CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 139 LRSFGFKDE--DASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~-~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
+..++.... ..+.....+.|.+|.+.|.+.+. +++++++++|++++.++++ +.|.+++|+++++|+||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeCEEEECCCCCcc
Confidence 655543321 12234567999999999988764 5899999999999988776 5588999988999999999999999
Q ss_pred hhhhcCCCCC---ccccceEEEEEEeCCCCCCCC-CceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022652 216 IAKWIGFSEP---KYVGHCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (294)
Q Consensus 216 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (294)
+|+.+..... .+.+...+. .......+.+ .....+.+.+.++.++|++++..++++....
T Consensus 160 vR~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~ 223 (391)
T PRK07588 160 VRRLVFGPERDFEHYLGCKVAA--CVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRA 223 (391)
T ss_pred chhhccCCccceEEEcCcEEEE--EEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEc
Confidence 9998732222 233333332 2222112222 3345556677788899998887766655543
No 6
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=198.33 Aligned_cols=214 Identities=40% Similarity=0.742 Sum_probs=163.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceE-EEcCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMA-VKSEDG 136 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~-~~~~~~ 136 (294)
+.+|+|||||++||++|..|+|+|++|+|+|++..++..|.++.+.-+++++|+.+++.+.+.+...+..+.. .....|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 4589999999999999999999999999999999999999999999999999999999999999888888764 455777
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCC------ceeEEEEcCCceEEEEecCCCEEEcCEEEecC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSS------ELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~------~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (294)
+....+.+...+. +......|..+...|.+..+.-.++++. ...+++..... ..+++.+|.++++|++|+||
T Consensus 82 ~~~~~~~~~~~~~-~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~-~~v~l~~g~~~~~dlligCD 159 (420)
T KOG2614|consen 82 KEVSRILYGEPDE-YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKK-LVVHLSDGTTVKGDLLIGCD 159 (420)
T ss_pred CeeEecccCCchH-HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccc-cceecCCCcEEEeeEEEEcC
Confidence 7777776654321 1233345556666666666655666654 34444443333 23789999999999999999
Q ss_pred CCCcHhhhhcCCCCCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022652 211 GIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273 (294)
Q Consensus 211 G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 273 (294)
|++|.+|+.++.+.|++.++++|+|...++...++......+.+++-+.|..|.....++|+.
T Consensus 160 Ga~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~ 222 (420)
T KOG2614|consen 160 GAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFL 222 (420)
T ss_pred chHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEee
Confidence 999999999998889999999999999887777765555555555555555555544455444
No 7
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.95 E-value=7e-26 Score=199.88 Aligned_cols=216 Identities=25% Similarity=0.371 Sum_probs=167.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC-C
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-D 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~-~ 135 (294)
...||+|||||++|+++|+.|++.|++|+|+||.+.+...|.++.+.+++.++|+.+|+++.+.........+.+.+. +
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 357999999999999999999999999999999998888889999999999999999999988776666666666653 4
Q ss_pred CcEEEEecCCCC---CCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEec
Q 022652 136 GRELRSFGFKDE---DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGC 209 (294)
Q Consensus 136 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A 209 (294)
+.....++.... ..+.....+.|.+|.+.|.+.+ .+++++++++|+++..++++ +.+.+.+|+++.+|+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEEC
Confidence 555444443211 1223455789999999999877 25899999999999887766 4588888888999999999
Q ss_pred CCCCcHhhhhcCCCCCccccceEEEEEEeCCCCCC-CC-CceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022652 210 DGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQP-FE-PKLNYIYGRGVRAGYVPVSPTKVYWFI 273 (294)
Q Consensus 210 ~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~ 273 (294)
||.+|.+|+.+....+.+.++.+|++......... .. .....+.+.+.+++++|+.++..++++
T Consensus 162 dG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~ 227 (396)
T PRK08163 162 DGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLV 227 (396)
T ss_pred CCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEE
Confidence 99999999998333566778888887776432211 11 234556677788889999888755444
No 8
>PRK08013 oxidoreductase; Provisional
Probab=99.95 E-value=2.4e-26 Score=202.77 Aligned_cols=210 Identities=21% Similarity=0.247 Sum_probs=151.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEcccHHHHHHHcCCchhHHhc-cccccceE
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMA 130 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~~ 130 (294)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.+.. ..++..+++++.++|+++|+++.+... ......+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 58999999999999999999999999999999886532 125567899999999999999998764 45666677
Q ss_pred EEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEE
Q 022652 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (294)
+++.+......+.......+...+.+.|..|.+.|.+.+ ++++++++++|++++.++++ +.+++.+|+++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEEE
Confidence 665432111112211112223346789999999998876 47899999999999888776 45888899999999999
Q ss_pred ecCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEE
Q 022652 208 GCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVY 270 (294)
Q Consensus 208 ~A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 270 (294)
+|||.+|.+|+.+++..... +.+.++.+.+... .+.......++..+++++++|++++..+
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 223 (400)
T PRK08013 162 GADGANSWLRNKADIPLTFWDYQHHALVATIRTE--EPHDAVARQVFHGDGILAFLPLSDPHLC 223 (400)
T ss_pred EeCCCCcHHHHHcCCCccccccCcEEEEEEEecc--CCCCCEEEEEEcCCCCEEEEECCCCCeE
Confidence 99999999999998775433 3344444443332 2223322333344446669999876543
No 9
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=3.7e-26 Score=201.63 Aligned_cols=217 Identities=24% Similarity=0.328 Sum_probs=163.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC-CCc
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-DGR 137 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 137 (294)
.+|+|||||++|+++|+.|+++|++|+|+|+.+.+...|.++.+.+++.++|+++|+++++.........+.+.+. ...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 5799999999999999999999999999999998878899999999999999999999998765554444444331 111
Q ss_pred EEEEecCCC---CCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEe---cCCCEEEcCEEEe
Q 022652 138 ELRSFGFKD---EDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANIVIG 208 (294)
Q Consensus 138 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~vV~ 208 (294)
......... .........++|.+|.+.|.+.+ ++++++++++|+++..++++ +.+++ .+++++++|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIg 161 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEE
Confidence 111111111 11123345689999999999876 36899999999999887666 33555 3345799999999
Q ss_pred cCCCCcHhhhhcCCCCCccccceEEEEEEeCCCCCC-------CCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQP-------FEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 209 A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
|||.+|.+|+.++...+.+.++.+|++.+..+.... ..+....+++.+..+.++|++++..++++...
T Consensus 162 ADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~ 236 (400)
T PRK06475 162 CDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAIT 236 (400)
T ss_pred CCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEE
Confidence 999999999999777778889999998775432111 12334566788888889999988766665443
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=5.5e-26 Score=200.91 Aligned_cols=216 Identities=20% Similarity=0.260 Sum_probs=158.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecC-CCCC----CcCceEEEcccHHHHHHHcCCchhHHhc-cccccceEE
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLR----TGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAV 131 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~-~~~~----~~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~~~ 131 (294)
.+||+|||||++|+++|+.|+++|++|+|+|+. +... ...++..+.+++.++|+++|+++++.+. ..+...+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999999999999999999999999999996 3221 2356788999999999999999999764 556667777
Q ss_pred EcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEe
Q 022652 132 KSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIG 208 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~ 208 (294)
++........++..........+.+.+..+.+.|.+.+ ++++++++++|+++..++++ +.|.+.+|++++||+||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVVG 162 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEEE
Confidence 76543222222222111223355678888888888766 47899999999999887776 458888999999999999
Q ss_pred cCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 209 CDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 209 A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
|||.+|.+|+.+++..+.. +++.++.+.+.... +.......++++++.+.++|+.++..+++++..
T Consensus 163 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~ 229 (405)
T PRK08850 163 ADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD--PHNSVARQIFTPQGPLAFLPMSEPNMSSIVWST 229 (405)
T ss_pred eCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC--CCCCEEEEEEcCCCceEEEECCCCCeEEEEEEC
Confidence 9999999999998775433 45667766654432 333444556667667779999876544444433
No 11
>PRK07045 putative monooxygenase; Reviewed
Probab=99.95 E-value=2e-25 Score=196.36 Aligned_cols=218 Identities=22% Similarity=0.289 Sum_probs=156.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhcccc-ccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLE-IKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~-~~~~~~~~~~ 135 (294)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.++..+.+..+.+++.++|+.+|+++.+...... ...+.+. .+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~-~~ 82 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY-HD 82 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe-cC
Confidence 568999999999999999999999999999999998765555667999999999999999988765432 3344443 34
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCc-eEEEEecCCCEEEcCEEEecCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G 211 (294)
+.....+++...........+.|.+|.+.|.+.+ ++++++++++|++++.++++ ++.|++.+|+++.+|+||+|||
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCC
Confidence 5555444443221112234578899999998775 47899999999999987766 3568888998999999999999
Q ss_pred CCcHhhhhc-CCCC--CccccceEEEEEEeCCCCCCCCCceEEEE-eCCeEEEEEEcCCCeEEEEEEEcCC
Q 022652 212 IRSPIAKWI-GFSE--PKYVGHCAYRGLGYYPNGQPFEPKLNYIY-GRGVRAGYVPVSPTKVYWFICHNNP 278 (294)
Q Consensus 212 ~~S~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (294)
.+|.+|+.+ +... +.+.+...+ +.+..... .+.....++ ..+.+++++|..++...|++.++.+
T Consensus 163 ~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 230 (388)
T PRK07045 163 ARSMIRDDVLRMPAERVPYATPMAF-GTIALTDS--VRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPAD 230 (388)
T ss_pred CChHHHHHhhCCCcccCCCCcceeE-EEEeccCC--ccccceEEEcCCCceEEEEEcCCCcEEEEEEeccc
Confidence 999999975 5443 233333333 44433222 122222333 3456778999988887777665543
No 12
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.95 E-value=1.7e-25 Score=204.26 Aligned_cols=219 Identities=22% Similarity=0.294 Sum_probs=165.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
...+||+|||||++|+++|+.|+++|++|+||||.+.+...++++.+.++++++|+.+|+++++.........+.++..+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 35789999999999999999999999999999999988778889999999999999999999988777777777787777
Q ss_pred CcEEEEecCCC-CCCCc-ceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEec--CC--CEEEcCEE
Q 022652 136 GRELRSFGFKD-EDASQ-EVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIV 206 (294)
Q Consensus 136 ~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~v 206 (294)
+..+..+.... ...+. ....+.+..+.+.|.+.+ ++++++++++|++++.+++++ .+++. +| +++++|+|
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v-~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV-TVTLTDADGQRETVRARYV 166 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE-EEEEEcCCCCEEEEEEEEE
Confidence 76665555311 11111 224577888888887765 489999999999999988874 46665 45 37999999
Q ss_pred EecCCCCcHhhhhcCCCCCccccceEEEEEEe--CCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 207 IGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGY--YPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
|+|||.+|.+|+.+++..........|. +++ .............+++.+..+.++|++++...|.+...
T Consensus 167 VgADG~~S~vR~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~ 237 (538)
T PRK06183 167 VGCDGANSFVRRTLGVPFEDLTFPERWL-VVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLL 237 (538)
T ss_pred EecCCCchhHHHHcCCeeeCCCccceEE-EEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeC
Confidence 9999999999999987654433233332 222 22121222344566677777889999988877766543
No 13
>PRK06847 hypothetical protein; Provisional
Probab=99.95 E-value=2.4e-25 Score=195.09 Aligned_cols=218 Identities=26% Similarity=0.403 Sum_probs=171.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
...||+|||||++|+++|+.|++.|++|+|+|+.+.+...|.++.+.+++.+.|+.+|+.+.+.........+.+++.++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 35799999999999999999999999999999999887788999999999999999999988887777777777777777
Q ss_pred cEEEEecCCCCC--CCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 137 RELRSFGFKDED--ASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 137 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
..+..++..... .......+.|.++.+.|.+.+ .+++++++++|++++.++++ +.+.+.+|+++.+|+||+|+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCC
Confidence 665444322111 012234578899999998877 47899999999999887766 5588888989999999999999
Q ss_pred CcHhhhhc-CCC-CCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022652 213 RSPIAKWI-GFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (294)
Q Consensus 213 ~S~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (294)
+|.+|+.+ +.. .+.+.+...+++..+.+. ..+. ...+.+++..+.++|..++..++++..+.+
T Consensus 162 ~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 226 (375)
T PRK06847 162 YSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--EVDR-SLMYLGPTTKAGVVPLSEDLMYLFVTEPRP 226 (375)
T ss_pred CcchhhHhcCCCCCceeccceEEEEEecCCC--Cccc-eEEEeCCCcEEEEEcCCCCeEEEEEeccCc
Confidence 99999988 543 567778888876554432 2222 356667778888999988877766655443
No 14
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.95 E-value=1.8e-25 Score=199.19 Aligned_cols=214 Identities=17% Similarity=0.219 Sum_probs=155.1
Q ss_pred CcEEEECCCHHHHHHHHHHHH----cCCceEEEecCCCCCC------------cCceEEEcccHHHHHHHcCCchhHHhc
Q 022652 59 EDIVIVGAGIAGLATAVSLQR----LGIGSLVIEQADSLRT------------GGTSLTLFKNGWSVLDALGVGSDLRSQ 122 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~----~G~~V~vlE~~~~~~~------------~g~~~~~~~~~~~~l~~lg~~~~~~~~ 122 (294)
|||+|||||++|+++|+.|++ +|++|+|+|+.+.+.. .+++..++++++++|+.+|+++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999653321 257899999999999999999999764
Q ss_pred -cccccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---C--CCceEeCCceeEEEEc-------CCc
Q 022652 123 -FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---P--PESVQFSSELAKIETS-------GNG 189 (294)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~--~v~i~~~~~v~~i~~~-------~~~ 189 (294)
......+.+++..+.....++... ......+.+.+..+.+.|.+.+ . +++++++++|++++.+ +++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 345666666665443333333221 1223356789999999888766 3 4889999999999752 234
Q ss_pred eEEEEecCCCEEEcCEEEecCCCCcHhhhhcCCCCCccc-cceEEEEEEeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCC
Q 022652 190 VTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPT 267 (294)
Q Consensus 190 ~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~ 267 (294)
+.|++.+|++++||+||+|||.+|.+|+.+++....+. .+.++.+.+..... +..+ .++.|. +++.+.++|++++
T Consensus 160 -v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~-~~~~~~~~~f~-~~g~~~~lPl~~~ 236 (437)
T TIGR01989 160 -VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEA-TENDVAWQRFL-PTGPIALLPLPDN 236 (437)
T ss_pred -eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccC-CCCCeEEEEEC-CCCCEEEeECCCC
Confidence 56888999999999999999999999999988765542 34444444443321 2333 344444 5555668999988
Q ss_pred eEEEEEEEc
Q 022652 268 KVYWFICHN 276 (294)
Q Consensus 268 ~~~~~~~~~ 276 (294)
...|++..+
T Consensus 237 ~~~~~~~~~ 245 (437)
T TIGR01989 237 NSTLVWSTS 245 (437)
T ss_pred CEEEEEeCC
Confidence 777665543
No 15
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=2e-25 Score=198.12 Aligned_cols=214 Identities=20% Similarity=0.281 Sum_probs=152.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC--cCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~--~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
..+||+|||||++|+++|..|+++|++|+|+||++.+.. .+.++.+.+++.++|+.+|+++++.........+.+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 578999999999999999999999999999999987643 477889999999999999999998877666666666655
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecC-C--CEEEcCEEEe
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN-G--TRIYANIVIG 208 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~-g--~~~~ad~vV~ 208 (294)
.+.....+...........+...+..+.+.|.+.+ ++++++++++|++++.++++ +.|++.+ + .+++||+||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEE
Confidence 44333333322111122223444557888887765 47899999999999887776 4467653 2 3699999999
Q ss_pred cCCCCcHhhhhcCCCCCccc-cceEEEEEEeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022652 209 CDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (294)
Q Consensus 209 A~G~~S~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (294)
|||.+|.+|+.++.....+. ...++...+.... +... ....++..+ +++++|++++...+++.
T Consensus 176 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~ 240 (415)
T PRK07364 176 ADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA--PHNDIAYERFWPSG-PFAILPLPGNRCQIVWT 240 (415)
T ss_pred eCCCCchhHHHhCCCceeecCCCEEEEEEEEccC--CCCCEEEEEecCCC-CeEEeECCCCCEEEEEE
Confidence 99999999999977654432 2334443443322 2222 233445444 56799999887666544
No 16
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-25 Score=200.65 Aligned_cols=215 Identities=22% Similarity=0.208 Sum_probs=154.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.++++++|+.+|+++++...........++...+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 36899999999999999999999999999999999887778899999999999999999999987766666665555444
Q ss_pred cEEEEecCCC-----CCCC-cceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEe---cCCCEEEcCE
Q 022652 137 RELRSFGFKD-----EDAS-QEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANI 205 (294)
Q Consensus 137 ~~~~~~~~~~-----~~~~-~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~ 205 (294)
... ...+.. ...+ .....+.+..+.+.|.+.+ .+++++++++|++++.+++++. +.+ .++++++||+
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~i~a~~ 159 (502)
T PRK06184 82 SVA-ESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT-ARVAGPAGEETVRARY 159 (502)
T ss_pred eEE-EeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeEEEEeCE
Confidence 322 222111 0111 2234577888888888776 3789999999999998887743 555 5556899999
Q ss_pred EEecCCCCcHhhhhcCCCCCccccc--eEEEEEEeCCCCCCCCCceEEEEeCC-eEEEEEEcCCCeEEEEEEE
Q 022652 206 VIGCDGIRSPIAKWIGFSEPKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRG-VRAGYVPVSPTKVYWFICH 275 (294)
Q Consensus 206 vV~A~G~~S~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~ 275 (294)
||+|||++|.+|+.+++........ ..+........ ........++... ..+.++|++++..+++++.
T Consensus 160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 230 (502)
T PRK06184 160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG--LDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAP 230 (502)
T ss_pred EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec--CCCcceEEccCCCCcEEEEEEccCCCeEEEEEE
Confidence 9999999999999998775544321 22222222221 1123344555443 6777899987655444443
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.95 E-value=3e-25 Score=195.54 Aligned_cols=218 Identities=19% Similarity=0.235 Sum_probs=156.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC-----cCceEEEcccHHHHHHHcCCchhHHhc-cccccce
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM 129 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~-----~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~ 129 (294)
...+||+|||||++|+++|+.|+++|++|+|+|+.+.+.. ..+...+.+++.++|+.+|+++.+... ..+...+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 4578999999999999999999999999999999875431 234567899999999999999998753 4455566
Q ss_pred EEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEE
Q 022652 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (294)
.++...+.....++..........+.+++..|.+.|.+.+ .+++++++++|++++.++++ +.|++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEE
Confidence 6665443322233322222233456788999999998876 48899999999999987776 45888888889999999
Q ss_pred ecCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 208 GCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 208 ~A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
+|+|.+|.+|+.+++..+.. +.+.++....... .+........+..++.+.++|++++...|++.++
T Consensus 163 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~ 230 (392)
T PRK08773 163 AADGAASTLRELAGLPVSRHDYAQRGVVAFVDTE--HPHQATAWQRFLPTGPLALLPFADGRSSIVWTLP 230 (392)
T ss_pred EecCCCchHHHhhcCCceEEEeccEEEEEEEEcc--CCCCCEEEEEeCCCCcEEEEECCCCceEEEEECC
Confidence 99999999999998775543 2223332222222 2223222333445555669999988776665554
No 18
>PRK07538 hypothetical protein; Provisional
Probab=99.94 E-value=9.5e-25 Score=193.44 Aligned_cols=217 Identities=21% Similarity=0.283 Sum_probs=162.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.||+|||||++|+++|+.|+++|++|+|+|+.+.++..|.++.+.+++.+.|+++|+++.+.........+.+++..+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 38999999999999999999999999999999988778999999999999999999999988777767777777766665
Q ss_pred EEEecCCC-CCCCcceeeeeHHHHHHHHHhcC---CC-CceEeCCceeEEEEcCCceEEEEecCC-----CEEEcCEEEe
Q 022652 139 LRSFGFKD-EDASQEVRAVERRILLETLANQL---PP-ESVQFSSELAKIETSGNGVTILELVNG-----TRIYANIVIG 208 (294)
Q Consensus 139 ~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~---~~-v~i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~ad~vV~ 208 (294)
+...+... .....+...++|.+|.+.|.+.+ .+ ..++++++|++++.++++++ +.+.++ ++++||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEE
Confidence 44322211 11223345689999999998765 13 46999999999998877633 444332 4799999999
Q ss_pred cCCCCcHhhhhcCCC--CCccccceEEEEEEeCCCCCCCCCceEEEEe-CCeEEEEEEcCCC-------eEEEEEEEcCC
Q 022652 209 CDGIRSPIAKWIGFS--EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG-RGVRAGYVPVSPT-------KVYWFICHNNP 278 (294)
Q Consensus 209 A~G~~S~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~~ 278 (294)
|||.+|.+|+.++.. .+.+.+...|++....+.. .......+++ ++..++++|+.++ .+.|++....+
T Consensus 160 ADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~ 237 (413)
T PRK07538 160 ADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPF--LTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVD 237 (413)
T ss_pred CCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccc--cCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCC
Confidence 999999999999544 4667788888887765432 1222233343 3566779998764 45666655443
No 19
>PRK07236 hypothetical protein; Provisional
Probab=99.94 E-value=5.7e-25 Score=193.22 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=153.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC-CCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~-~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
...+|+|||||++|+++|+.|++.|++|+|+||.+.+ ...|.++.+.+++.+.|+.+|+.+.. ..........+...+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDRD 83 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeCC
Confidence 4689999999999999999999999999999998754 34677889999999999999997664 334444455555555
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
+..+...+.. .....+..+.+.|.+.+++++++++++|++++.++++ +.|.+.+|+++++|+||+|||.+|.
T Consensus 84 g~~~~~~~~~-------~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 84 GRVVQRRPMP-------QTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CCEeeccCCC-------ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCch
Confidence 6544322221 1124677888889888877889999999999988776 5588999999999999999999999
Q ss_pred hhhhc-CCCCCccccceEEEEEEeCCCC-C----CCCCceEEEEeCCeEEEEEEcCC
Q 022652 216 IAKWI-GFSEPKYVGHCAYRGLGYYPNG-Q----PFEPKLNYIYGRGVRAGYVPVSP 266 (294)
Q Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~p~~~ 266 (294)
+|+++ +...+.+.++.+|++++..... . .+...+..+.+++..++++|+++
T Consensus 156 vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (386)
T PRK07236 156 VRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPG 212 (386)
T ss_pred HHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCC
Confidence 99998 4446778888888877643211 1 12234556667787888888864
No 20
>PTZ00367 squalene epoxidase; Provisional
Probab=99.94 E-value=7.3e-25 Score=198.37 Aligned_cols=217 Identities=18% Similarity=0.174 Sum_probs=159.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC-CCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~-~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
..+||+|||||++|+++|+.|+++|++|+|+|+... ......+..+.+++.++|+++|+++.+........++.+++.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 578999999999999999999999999999999862 1112345578999999999999999988777777777777766
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC-----CCCceEeCCceeEEEEcCCc----eEEE--EecC-------
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL-----PPESVQFSSELAKIETSGNG----VTIL--ELVN------- 197 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~v~i~~~~~v~~i~~~~~~----~~~v--~~~~------- 197 (294)
+... ..++.. ......+++.++.+.|.+.+ ++++++. .+|+++..++.. +.+| +..+
T Consensus 112 G~~~-~i~~~~---~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~ 186 (567)
T PTZ00367 112 GKQV-KLPYGA---GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN 186 (567)
T ss_pred CCEE-EecCCC---CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence 6543 233321 22344567888888877654 5788864 578887654432 2233 3333
Q ss_pred ----------------CCEEEcCEEEecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEE
Q 022652 198 ----------------GTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGY 261 (294)
Q Consensus 198 ----------------g~~~~ad~vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (294)
++++.||+||+|||.+|.+|+.++...+.+.+...|++........+.++..+.+++++..+++
T Consensus 187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~ 266 (567)
T PTZ00367 187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS 266 (567)
T ss_pred ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence 4579999999999999999999987666666667776654332222334455677888899999
Q ss_pred EEcCCCeEEEEEEEcCC
Q 022652 262 VPVSPTKVYWFICHNNP 278 (294)
Q Consensus 262 ~p~~~~~~~~~~~~~~~ 278 (294)
+|+++++.+++++++.+
T Consensus 267 yPl~~~~~r~lv~~~~~ 283 (567)
T PTZ00367 267 YRLDDNELRVLVDYNKP 283 (567)
T ss_pred EEcCCCeEEEEEEecCC
Confidence 99999999888887665
No 21
>PRK09126 hypothetical protein; Provisional
Probab=99.94 E-value=3.7e-25 Score=195.04 Aligned_cols=218 Identities=18% Similarity=0.218 Sum_probs=156.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-----CcCceEEEcccHHHHHHHcCCchhHHhcc-ccccceE
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-----TGGTSLTLFKNGWSVLDALGVGSDLRSQF-LEIKGMA 130 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-----~~g~~~~~~~~~~~~l~~lg~~~~~~~~~-~~~~~~~ 130 (294)
+++||+|||||++|+++|+.|+++|++|+|+||.+.++ ..|.++.+.+++.+.|+.+|+++.+.... .+.....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 36899999999999999999999999999999998642 34667778899999999999998876543 3444555
Q ss_pred EEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEE
Q 022652 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (294)
+.+........++..........+.+.+..+.+.|.+.+ .+++++++++|++++.++++ +.|.+++|+++.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLV 160 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEE
Confidence 554333222222211111122344578888888887765 48999999999999887666 55888888899999999
Q ss_pred ecCCCCcHhhhhcCCCC-CccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022652 208 GCDGIRSPIAKWIGFSE-PKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (294)
Q Consensus 208 ~A~G~~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (294)
+|||.+|.+|+.+++.. ....+...+........ +.......+++.+.+++++|.+++..+|++.++.
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 229 (392)
T PRK09126 161 AADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPP 229 (392)
T ss_pred EeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--CCCCEEEEEecCCCCeEEeECCCCCEEEEEECCH
Confidence 99999999999997654 23344444443333221 2233445566777788899999887776665433
No 22
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.94 E-value=3.7e-25 Score=196.21 Aligned_cols=211 Identities=22% Similarity=0.345 Sum_probs=157.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhcccc----ccceEEEcC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLE----IKGMAVKSE 134 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~----~~~~~~~~~ 134 (294)
+|+|||||++||++|+.|+++| ++|+|+||.+.++..|.++.+.+++++.|+.+|+.+.+...... .....+...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 59999999998888899999999999999999998777653321 112211111
Q ss_pred ---CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 135 ---DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
.+..... ... .......++|.+|.+.|.+.+++..++++++|+++..++++ +.|.+.+|.++++|+||+|||
T Consensus 82 ~~~~~~~~~~-~~~---~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG 156 (414)
T TIGR03219 82 NGSDASYLGA-TIA---PGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADG 156 (414)
T ss_pred ecCccceeee-ecc---ccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCC
Confidence 1111111 000 11122358899999999999877788999999999987777 668889998999999999999
Q ss_pred CCcHhhhhcCC------CCCccccceEEEEEEeCCCC----------CCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022652 212 IRSPIAKWIGF------SEPKYVGHCAYRGLGYYPNG----------QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (294)
Q Consensus 212 ~~S~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (294)
.+|.+|+.+.. ..|.+.|+.+|++++..... ..+.+....+++.+.+++++|+.++..++++++
T Consensus 157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 236 (414)
T TIGR03219 157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF 236 (414)
T ss_pred ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence 99999998831 24667888999988753211 011123456778888888999999886555444
No 23
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.94 E-value=7.1e-25 Score=192.79 Aligned_cols=214 Identities=21% Similarity=0.288 Sum_probs=158.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc-----CceEEEcccHHHHHHHcCCchhHHh-ccccccceEEEc
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG-----GTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKS 133 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~-----g~~~~~~~~~~~~l~~lg~~~~~~~-~~~~~~~~~~~~ 133 (294)
||+|||||++|+++|+.|+++|++|+|+||.+.++.. +++..+.+++.+.|+++|+++++.. .......+.++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999876422 5778999999999999999999887 666777777776
Q ss_pred CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCC--C-CceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecC
Q 022652 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP--P-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~-v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (294)
..+.....+...........+.+.+.+|.+.|.+.+. + ++++++++|+++..++++ +.+.+++|+++.+|+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~vi~ad 159 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRARLLVGAD 159 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEeeEEEEeC
Confidence 5543322222211122334567899999999998772 3 899999999999887776 45888899889999999999
Q ss_pred CCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 211 GIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 211 G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
|.+|.+|++++++.+.. .+...+......+. +.......++..+++++++|++++...+.+...
T Consensus 160 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 224 (385)
T TIGR01988 160 GANSKVRQLAGIPTTGWDYGQSAVVANVKHER--PHQGTAWERFTPTGPLALLPLPDNRSSLVWTLP 224 (385)
T ss_pred CCCCHHHHHcCCCccccccCCeEEEEEEEecC--CCCCEEEEEecCCCCEEEeECCCCCeEEEEECC
Confidence 99999999998664332 23444443333222 112222334445566779999998766655543
No 24
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=1.2e-24 Score=192.50 Aligned_cols=214 Identities=19% Similarity=0.285 Sum_probs=158.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCC--CcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~~~--~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 133 (294)
.+||+|||||++|+++|+.|+++| ++|+|+|+.+... ..+++..+.+++.++|+.+|+++.+.....+...+.+++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 479999999999999999999996 9999999987643 347889999999999999999999987777777777665
Q ss_pred CCCcEE---EEecCCCC--CCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEE
Q 022652 134 EDGREL---RSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (294)
Q Consensus 134 ~~~~~~---~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (294)
..+... ....+... ........+++..+.+.|.+.+ .+++++++++|+++..++++ +.|.+.+|+++.+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLL 159 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEE
Confidence 433211 11222111 1122345789999999998877 47899999999999887776 5588888888999999
Q ss_pred EecCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022652 207 IGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (294)
|+|+|.+|.+|+.+++..... +++.++........ +.......++..+++++++|++++...|++.
T Consensus 160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~ 226 (403)
T PRK07333 160 VAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER--PHGGRAEEHFLPAGPFAILPLKGNRSSLVWT 226 (403)
T ss_pred EEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC--CCCCEEEEEeCCCCceEEeECCCCCeEEEEE
Confidence 999999999999998765332 34555544443332 2223334445566667799999988766543
No 25
>PRK08244 hypothetical protein; Provisional
Probab=99.94 E-value=1.5e-24 Score=196.18 Aligned_cols=211 Identities=21% Similarity=0.234 Sum_probs=154.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
++||+||||||+|+++|+.|+++|++|+||||.+.+...++++.+.++++++|+++|+++.+...........+....+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 57999999999999999999999999999999998877899999999999999999999998876655555544432211
Q ss_pred EEEEecCCCCC-CCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEec--CC-CEEEcCEEEecCC
Q 022652 138 ELRSFGFKDED-ASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV--NG-TRIYANIVIGCDG 211 (294)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~--~g-~~~~ad~vV~A~G 211 (294)
+++.... .......+.+..+.+.|.+.+ .++++++++++++++.+++++ .+.+. +| +++++|+||+|||
T Consensus 82 ----~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~~~g~~~i~a~~vVgADG 156 (493)
T PRK08244 82 ----LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGV-EVVVRGPDGLRTLTSSYVVGADG 156 (493)
T ss_pred ----CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeE-EEEEEeCCccEEEEeCEEEECCC
Confidence 1221111 112235678888888887766 489999999999999887764 35443 45 4799999999999
Q ss_pred CCcHhhhhcCCCCCccc-cceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022652 212 IRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (294)
Q Consensus 212 ~~S~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (294)
.+|.+|+.+++..+... .+..+.+...... +.......++.++.+++++|++++.+.|++..
T Consensus 157 ~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~ 219 (493)
T PRK08244 157 AGSIVRKQAGIAFPGTDATFTAMLGDVVLKD--PPPSSVLSLCTREGGVMIVPLSGGIYRVLIID 219 (493)
T ss_pred CChHHHHhcCCCccCCCcceEEEEEEEEecC--CCCcceeEEEeCCceEEEEECCCCeEEEEEEc
Confidence 99999999987654332 2333333332221 12223445567777888999998877665543
No 26
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.94 E-value=6.1e-25 Score=194.36 Aligned_cols=207 Identities=21% Similarity=0.304 Sum_probs=147.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC--------CCcCceEEEcccHHHHHHHcCCchhHHhc-cccccc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--------RTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKG 128 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~--------~~~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~ 128 (294)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.. ....++..+.+++.++|+++|+++.+... ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998731 11224567899999999999999998653 445667
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEE
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (294)
+.+++..+.....+...........+.+.+..+.+.|.+.+ .++++++++++++++.++++ +.|.+.+|+++.+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEE
Confidence 77776655433333321111223346788889998888766 37899999999999988777 5588888888999999
Q ss_pred EecCCCCcHhhhhcCCCCCccc-cceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCC
Q 022652 207 IGCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT 267 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 267 (294)
|+|||.+|.+|+.+++..+.+. .+.+. +.......+........+.+++.++++|++++
T Consensus 161 VgAdG~~S~vR~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~ 220 (405)
T PRK05714 161 VAADGANSAVRRLAGCATREWDYLHHAI--VTSVRCSEPHRATAWQRFTDDGPLAFLPLERD 220 (405)
T ss_pred EEecCCCchhHHhcCCCcccccCCceEE--EEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCC
Confidence 9999999999999987644332 12222 22222222223222333455567779999753
No 27
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.94 E-value=9.2e-25 Score=191.87 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=153.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCCCc----CceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~~~~~----g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
||+||||||+|+++|+.|+++| ++|+|+|+.+.+... +++..+.+++.+.|+.+|+++.+.........+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999999876532 46788999999999999999988766555555555443
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
.......+...........+.++|.+|.+.|.+.+ ++++++++++|+++..++++ +.|.+.+|+++.||+||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecC
Confidence 22111112211111223346789999999999876 37899999999999887776 458888888899999999999
Q ss_pred CCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCC-eEEEEEE
Q 022652 212 IRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT-KVYWFIC 274 (294)
Q Consensus 212 ~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~ 274 (294)
.+|.+|+.+++..+.. +++.++...+..... .......++..+..+.++|++++ ...+++.
T Consensus 160 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~ 222 (382)
T TIGR01984 160 ANSKVRELLSIPTEEHDYNQTALIANIRHEQP--HQGCAFERFTPHGPLALLPLKDNYRSSLVWC 222 (382)
T ss_pred CChHHHHHcCCCCcccccCCEEEEEEEEecCC--CCCEEEEeeCCCCCeEECcCCCCCCEEEEEE
Confidence 9999999998764433 455666555443222 12222334455556779999988 4444433
No 28
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=1.2e-24 Score=191.45 Aligned_cols=214 Identities=20% Similarity=0.280 Sum_probs=155.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
+..+||+|||||++|+++|+.|+++|++|+|+|+.+.+. ..++..+.+++.++|+++|+++.+.........+.+++.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 346899999999999999999999999999999987653 3456677788999999999999998777777778877765
Q ss_pred CcEEE----EecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEe
Q 022652 136 GRELR----SFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIG 208 (294)
Q Consensus 136 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~ 208 (294)
+.... .+...........+.+.+..+.+.|.+.+ +++. +++++|++++.++++ +.|++++|+++++|+||+
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07494 84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-VTVTLADGTTLSARLVVG 161 (388)
T ss_pred CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-EEEEECCCCEEEEeEEEE
Confidence 54321 12111111223346789999999998876 2445 889999999888777 458888888999999999
Q ss_pred cCCCCcHhhhhcCCCCCc-cccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022652 209 CDGIRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (294)
Q Consensus 209 A~G~~S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (294)
|||.+|.+|+.+++.... .+++.++...+... .+.......++..++.+.++|++++...+++.
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~ 226 (388)
T PRK07494 162 ADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS--RPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWV 226 (388)
T ss_pred ecCCCchhHHhcCCCceecCCCCEEEEEEEecc--CCCCCEEEEEeCCCCcEEEEECCCCcEEEEEE
Confidence 999999999999877543 34555554433322 22333223333444556689998876554433
No 29
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.94 E-value=5e-24 Score=194.08 Aligned_cols=222 Identities=23% Similarity=0.358 Sum_probs=160.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC-CCcC---ceEEEcccHHHHHHHcCCc--hhHHhccccc-cc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGG---TSLTLFKNGWSVLDALGVG--SDLRSQFLEI-KG 128 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~-~~~g---~~~~~~~~~~~~l~~lg~~--~~~~~~~~~~-~~ 128 (294)
..+.+|+|||||++|+++|+.|+++|++|+|+||.+.. +..| .++.+.++++++|+.+|++ +++....... ..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999998632 2222 5688999999999999863 4444433221 11
Q ss_pred eE-EEc-CCCcEEEEecCCC--CCCC-cceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEc
Q 022652 129 MA-VKS-EDGRELRSFGFKD--EDAS-QEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYA 203 (294)
Q Consensus 129 ~~-~~~-~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~a 203 (294)
+. +.+ ..+.....++... ...+ .....+.|.+|.+.|.+.+....++++++|++++.++++ +.|.+.+|+++.+
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~-VtV~~~dG~ti~a 237 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDK-VTVVLENGQRYEG 237 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCE-EEEEECCCCEEEc
Confidence 21 122 2343333332211 1111 224578999999999988854457889999999987776 4588999988999
Q ss_pred CEEEecCCCCcHhhhhc-CCCCCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022652 204 NIVIGCDGIRSPIAKWI-GFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (294)
Q Consensus 204 d~vV~A~G~~S~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (294)
|+||+|||++|.+|+.+ +...+.+.++.+|+++++.............+.+.+.++.++|..++..+|+.+++.+
T Consensus 238 DlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p 313 (668)
T PLN02927 238 DLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 313 (668)
T ss_pred CEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence 99999999999999998 6667788899999988876432211223455677888888888888887777665554
No 30
>PRK06185 hypothetical protein; Provisional
Probab=99.94 E-value=4.9e-24 Score=188.76 Aligned_cols=218 Identities=19% Similarity=0.235 Sum_probs=152.2
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhc-cccccceEEEc
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKS 133 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~~~~~ 133 (294)
....+||+|||||++|+++|+.|+++|++|+|+|+.+......++..+++.+.++|+.+|+++.+... ......+.++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE
Confidence 34678999999999999999999999999999999876544556778999999999999999988753 33455555553
Q ss_pred CCCcEEEEecCCCCCC-CcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEE--ecCCC-EEEcCEE
Q 022652 134 EDGRELRSFGFKDEDA-SQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILE--LVNGT-RIYANIV 206 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~--~~~g~-~~~ad~v 206 (294)
. +......++..... ......+.+..+.+.|.+.+ ++++++++++|+++..+++++..|. ..+|+ ++++|+|
T Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~v 161 (407)
T PRK06185 83 G-GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLV 161 (407)
T ss_pred C-CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEE
Confidence 3 23233333332211 22345688889999888765 4789999999999998877654343 44664 7999999
Q ss_pred EecCCCCcHhhhhcCCCCCcccc-ceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 207 IGCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
|+|||.+|.+|+.+++..+.+.. .... ++..+......+.....+.++..++++|.. +.+.+++..+
T Consensus 162 I~AdG~~S~vr~~~gi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~ 229 (407)
T PRK06185 162 VGADGRHSRVRALAGLEVREFGAPMDVL--WFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIP 229 (407)
T ss_pred EECCCCchHHHHHcCCCccccCCCceeE--EEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEec
Confidence 99999999999999887554432 2222 233332222222233455667777799987 5555444443
No 31
>PRK07190 hypothetical protein; Provisional
Probab=99.93 E-value=5.6e-24 Score=190.96 Aligned_cols=215 Identities=19% Similarity=0.259 Sum_probs=150.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
..+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+++.++|+.+|+++.+............+.. +
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~-g 82 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN-G 82 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC-C
Confidence 468999999999999999999999999999999998877889999999999999999999988765554444433332 2
Q ss_pred cEEEEec--CCCC--CCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecC
Q 022652 137 RELRSFG--FKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (294)
Q Consensus 137 ~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (294)
..+.... +... ........+.+..+.+.|.+.+ .|++++++++|++++.+++++. +.+.+|++++|++||+||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TTLSNGERIQSRYVIGAD 161 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EEECCCcEEEeCEEEECC
Confidence 2221111 1100 1112234567777877777665 4899999999999999887744 667778889999999999
Q ss_pred CCCcHhhhhcCCCCCccccceEEEEE-EeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022652 211 GIRSPIAKWIGFSEPKYVGHCAYRGL-GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273 (294)
Q Consensus 211 G~~S~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 273 (294)
|.+|.+|+.+|+..+.......|... .......+.......+..+.+.++++|..++...+++
T Consensus 162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~ 225 (487)
T PRK07190 162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYV 225 (487)
T ss_pred CCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEE
Confidence 99999999998876544333322211 1222221211122334445555668898876555444
No 32
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.93 E-value=5.8e-24 Score=186.67 Aligned_cols=210 Identities=22% Similarity=0.259 Sum_probs=142.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC--CC----cCceEEEcccHHHHHHHcCCchhHHhc-cccccceE
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--RT----GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMA 130 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~--~~----~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~~ 130 (294)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.. .. +.+...+.++++++|+++|+++.+... ..+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 479999999999999999999999999999987522 11 224568999999999999999988653 33444444
Q ss_pred EEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEE
Q 022652 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (294)
.+...... ..+...........+.+.+..|...|.+.+ ++++++++++|++++.++++ +.|++.+|.++++|+||
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 83 TWEHPECR-TRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEeCCCce-EEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-EEEEECCCCEEEeeEEE
Confidence 44322111 122211111122235567777888887665 47899999999999988777 45899999999999999
Q ss_pred ecCCCCcHhhhhcCCCCCccc-cceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEE
Q 022652 208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYW 271 (294)
Q Consensus 208 ~A~G~~S~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 271 (294)
+|||.+|.+|+.+++....+. .+.++......... ..+..+..++..|... ++|++++...+
T Consensus 161 gADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~g~~~-~~pl~~~~~~~ 223 (384)
T PRK08849 161 GADGANSQVRQLAGIGITAWDYRQHCMLINVETEQP-QQDITWQQFTPSGPRS-FLPLCGNQGSL 223 (384)
T ss_pred EecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCC-CCCEEEEEeCCCCCEE-EeEcCCCceEE
Confidence 999999999999977643332 22222222222211 1223344454455554 68998765443
No 33
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.93 E-value=2e-24 Score=187.67 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=144.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhcccccc--ceEEEcC-
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK--GMAVKSE- 134 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~--~~~~~~~- 134 (294)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.+...+++..+.+++.++|+.+|+++.+........ ...+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 3699999999999999999999999999999999988888999999999999999999998887654332 2222222
Q ss_pred CCc------EEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceE-EEEec-CC--CEEE
Q 022652 135 DGR------ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVT-ILELV-NG--TRIY 202 (294)
Q Consensus 135 ~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~-~v~~~-~g--~~~~ 202 (294)
.+. ......+...........+.|.+|.+.|.+.+ .++++++++++++++.+++++. .+... +| ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence 111 01111111123345566789999999999887 3799999999999998888743 22222 23 2689
Q ss_pred cCEEEecCCCCcHhhhhcCCCCCccccc--eEEEEEEeCCCCC-CCCCceEEEEeCCeEEEEEEcCC-CeEEEEEEE
Q 022652 203 ANIVIGCDGIRSPIAKWIGFSEPKYVGH--CAYRGLGYYPNGQ-PFEPKLNYIYGRGVRAGYVPVSP-TKVYWFICH 275 (294)
Q Consensus 203 ad~vV~A~G~~S~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~ 275 (294)
||+||+|||.+|.+|+.++...+..... ..+..+....... ...+...........++++|..+ +...+++..
T Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 237 (356)
T PF01494_consen 161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFL 237 (356)
T ss_dssp ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEE
T ss_pred EeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEee
Confidence 9999999999999999997764333222 2222222222121 12232334444555567999988 433333333
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.93 E-value=1.7e-23 Score=184.23 Aligned_cols=213 Identities=19% Similarity=0.250 Sum_probs=151.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc-----CceEEEcccHHHHHHHcCCchhHHh-ccccccceE
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG-----GTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMA 130 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~-----g~~~~~~~~~~~~l~~lg~~~~~~~-~~~~~~~~~ 130 (294)
..+||+|||||++|+++|+.|++.|++|+|+|+.+.+... .+...+.+++.++|+.+|+++++.. ...+...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 4689999999999999999999999999999999876432 2447899999999999999988753 233444555
Q ss_pred EEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCC--C-CceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEE
Q 022652 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP--P-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~-v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (294)
+.......+. +.......+.....+++..+.+.|.+.+. + ++++ +++|+++..++++ +.|.+.+|.++.||+||
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI 160 (388)
T PRK07608 84 VFGDAHARLH-FSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTLADGQVLRADLVV 160 (388)
T ss_pred EEECCCceeE-eeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEECCCCEEEeeEEE
Confidence 5543322221 11111122334566889999999988762 3 7788 9999999877776 55888888889999999
Q ss_pred ecCCCCcHhhhhcCCCCCccc-cceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022652 208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (294)
Q Consensus 208 ~A~G~~S~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (294)
+|+|.+|.+|+.++...+... ...++...... ..+..+....+++.+.+++++|++++...+.+.
T Consensus 161 ~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (388)
T PRK07608 161 GADGAHSWVRSQAGIKAERRPYRQTGVVANFKA--ERPHRGTAYQWFRDDGILALLPLPDGHVSMVWS 226 (388)
T ss_pred EeCCCCchHHHhcCCCccccccCCEEEEEEEEe--cCCCCCEEEEEecCCCCEEEeECCCCCeEEEEE
Confidence 999999999999987654332 22333322222 222233345556777788899999987665444
No 35
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=1.7e-23 Score=184.66 Aligned_cols=217 Identities=19% Similarity=0.239 Sum_probs=151.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCceEEEecCCCC-----CCcCceEEEcccHHHHHHHcCCchhHHhccccccc
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSL-----RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~---G~~V~vlE~~~~~-----~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 128 (294)
..+||+|||||++|+++|+.|+++ |++|+|+||.... ...+++..+.+++.+.|+.+|+++.+.........
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 468999999999999999999998 9999999995322 22356788999999999999999998876665555
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCE
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANI 205 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~ 205 (294)
+.+..........+.......+.....+.+.++.+.|.+.+ .+++++++++|+++..++++ +.|.+.++.++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRL 160 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCE
Confidence 55443222111111111111122335688888888887755 47899999999999877766 558888888899999
Q ss_pred EEecCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022652 206 VIGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (294)
Q Consensus 206 vV~A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (294)
||+|+|.+|.+|+.+++..... .++..+.+.+..... ........+..++.++++|.+++...++++++
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~ 230 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA--HQGRAFERFTEHGPLALLPMSDGRCSLVWCHP 230 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC--CCCEEEEeecCCCCEEEeECCCCCeEEEEECC
Confidence 9999999999999997764433 345555544433211 12122223344556779999998876655543
No 36
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.93 E-value=4.1e-23 Score=181.77 Aligned_cols=164 Identities=20% Similarity=0.308 Sum_probs=124.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC--CcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~--~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
.+||+|||||++|+++|+.|+++|++|+|+|+.+... ...++..+.+++.++|+++|+++.+.........+.+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 5799999999999999999999999999999998532 2234456899999999999999999877777677776653
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEE-cCCceEEEEe-cCCC--EEEcCEEEec
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILEL-VNGT--RIYANIVIGC 209 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~-~~~~~~~v~~-~~g~--~~~ad~vV~A 209 (294)
+. ...+++...........+.+..+.+.|++.+ .++++++++++++++. ++++ ..|++ .+|+ ++++|+||+|
T Consensus 81 g~-~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 81 GR-RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred CE-EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEEC
Confidence 33 3344443322233344456777887777654 4789999999999986 4444 34666 3564 6899999999
Q ss_pred CCCCcHhhhhcCCCC
Q 022652 210 DGIRSPIAKWIGFSE 224 (294)
Q Consensus 210 ~G~~S~~~~~~~~~~ 224 (294)
||.+|.+|++++...
T Consensus 159 DG~~S~vR~~~~~~~ 173 (392)
T PRK08243 159 DGFHGVSRASIPAGA 173 (392)
T ss_pred CCCCCchhhhcCcch
Confidence 999999999996643
No 37
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.93 E-value=2.6e-23 Score=191.82 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=151.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~-G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
...+||+||||||+||++|+.|++. |++|.|||+.+.+...|++..+.++++++|+.+|+++.+.........+.++..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3578999999999999999999995 999999999988777889999999999999999999999887777666776664
Q ss_pred CCc---EEEE----ecCCCCCCCcceeeeeHHHHHHHHHhcCC--C--CceEeCCceeEEEEcCCc--eEEEEec-----
Q 022652 135 DGR---ELRS----FGFKDEDASQEVRAVERRILLETLANQLP--P--ESVQFSSELAKIETSGNG--VTILELV----- 196 (294)
Q Consensus 135 ~~~---~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--v~i~~~~~v~~i~~~~~~--~~~v~~~----- 196 (294)
++. .+.. ..............+++..+.+.|.+.+. + +++++++++++++.++++ .+.|++.
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 332 1110 01111111233456788888888887762 2 578899999999876432 2445553
Q ss_pred -CC--CEEEcCEEEecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCCCCCC--C-ceEEEEeCCeEEEEEEcCCCeEE
Q 022652 197 -NG--TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFE--P-KLNYIYGRGVRAGYVPVSPTKVY 270 (294)
Q Consensus 197 -~g--~~~~ad~vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~p~~~~~~~ 270 (294)
+| ++++||+||+|||++|.+|+.+|+..........| ++.+.....+++ . ...+..+.++.+.++|+.++..+
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~ 268 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLV 268 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceE-EEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEE
Confidence 34 47999999999999999999998875544333332 333332111222 1 12233345667779999988644
Q ss_pred E
Q 022652 271 W 271 (294)
Q Consensus 271 ~ 271 (294)
+
T Consensus 269 r 269 (634)
T PRK08294 269 R 269 (634)
T ss_pred E
Confidence 3
No 38
>PLN02985 squalene monooxygenase
Probab=99.92 E-value=3.9e-23 Score=186.22 Aligned_cols=219 Identities=20% Similarity=0.208 Sum_probs=153.1
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhc-cccccceEEEc
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKS 133 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~~~~~ 133 (294)
....+||+|||||++|+++|+.|+++|++|+|+||.......+.+..+.+++.+.|+++|+++.+... .....++.+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~ 119 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK 119 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence 44578999999999999999999999999999999875444566788999999999999999988754 33555666554
Q ss_pred CCCcEE-EEecCCCCC--CCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEe--cCCC--EEEc
Q 022652 134 EDGREL-RSFGFKDED--ASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT--RIYA 203 (294)
Q Consensus 134 ~~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~--~~g~--~~~a 203 (294)
++... ..++..... .......+++.+|.+.|.+.+ ++++++.+ +++++..+++.+.+|++ .+|+ ++.|
T Consensus 120 -~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 120 -DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred -CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 34332 222211111 122345788999999998876 46888765 57777665554434544 4565 3579
Q ss_pred CEEEecCCCCcHhhhhcCCCCCc-cccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022652 204 NIVIGCDGIRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (294)
Q Consensus 204 d~vV~A~G~~S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (294)
|+||+|||.+|.+|+.++...+. +.+...+ .......+.++..+++++.+..+.++|++++++++++..+..
T Consensus 198 dLVVgADG~~S~vR~~l~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~ 270 (514)
T PLN02985 198 PLTVVCDGCYSNLRRSLNDNNAEVLSYQVGY---ISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPD 270 (514)
T ss_pred CEEEECCCCchHHHHHhccCCCcceeEeEEE---EEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCC
Confidence 99999999999999999765432 3333333 221111122344567778888889999999988777766543
No 39
>PRK06126 hypothetical protein; Provisional
Probab=99.92 E-value=3.1e-23 Score=189.95 Aligned_cols=217 Identities=23% Similarity=0.361 Sum_probs=149.7
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccc----cceE
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEI----KGMA 130 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~----~~~~ 130 (294)
.+..+||+|||||++|+++|+.|+++|++|+|+||.+.+...+++..+.++++++|+.+|+++++.+...+. ....
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 345789999999999999999999999999999999887778888999999999999999999987755432 1122
Q ss_pred EEcCCCcEEEEecCCCC--------------CCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEE
Q 022652 131 VKSEDGRELRSFGFKDE--------------DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTIL 193 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v 193 (294)
.....|..+..+.+... ..+.....+.+..+.+.|.+.+ ++++++++++|+++..+++++. +
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v 162 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-A 162 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-E
Confidence 22334544444433211 0112245678888888888765 4799999999999998877643 4
Q ss_pred Ee---cCCC--EEEcCEEEecCCCCcHhhhhcCCCCCccccc-eEEEEEEeCCCC---CCCCC-ceEEEEeCCeEEEEEE
Q 022652 194 EL---VNGT--RIYANIVIGCDGIRSPIAKWIGFSEPKYVGH-CAYRGLGYYPNG---QPFEP-KLNYIYGRGVRAGYVP 263 (294)
Q Consensus 194 ~~---~~g~--~~~ad~vV~A~G~~S~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~p 263 (294)
.+ .+|+ ++++|+||+|||++|.+|+.+++........ ..+..+...+.. .+... ...++++++.+..++|
T Consensus 163 ~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~ 242 (545)
T PRK06126 163 TVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVA 242 (545)
T ss_pred EEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEE
Confidence 44 3353 6899999999999999999998765433221 122222222211 11122 2344456666667778
Q ss_pred cCCCeEEEE
Q 022652 264 VSPTKVYWF 272 (294)
Q Consensus 264 ~~~~~~~~~ 272 (294)
.+++..+++
T Consensus 243 ~~~~~~~~~ 251 (545)
T PRK06126 243 IDGRDEWLF 251 (545)
T ss_pred ECCCCeEEE
Confidence 766554333
No 40
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.92 E-value=6e-23 Score=180.91 Aligned_cols=212 Identities=21% Similarity=0.276 Sum_probs=146.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEcccHHHHHHHcCCchhHHhc-cccccce
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM 129 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~ 129 (294)
..+||+|||||++|+++|+.|+++|++|+|+|+.+.... ..+...+.+++.++|+.+|+++.+... ..+...+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 568999999999999999999999999999999864321 225578899999999999999888653 2333333
Q ss_pred EEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEE
Q 022652 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (294)
..+...+... .++......+...+.+++..|.+.|.+.+ ++++++++++|+++..++++ +.|.+.+|+++++|+|
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 84 ETWEWETAHV-VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAKLV 161 (391)
T ss_pred EEEeCCCCeE-EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeCEE
Confidence 3332222211 12211111233346789999999998765 48899999999999887766 5588888888999999
Q ss_pred EecCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022652 207 IGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF 272 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 272 (294)
|+|||.+|.+|+.+++..... +.+.++......+.. +....+..+..++.. .++|+.++...++
T Consensus 162 I~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~p~~~~~~~~v 226 (391)
T PRK08020 162 IGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP-PGDSTWQQFTPSGPR-AFLPLFDNWASLV 226 (391)
T ss_pred EEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC-CCCEEEEEEcCCCCE-EEeECCCCcEEEE
Confidence 999999999999997654322 224444444443321 222334445555554 4789987654443
No 41
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.92 E-value=1.2e-22 Score=172.08 Aligned_cols=224 Identities=21% Similarity=0.204 Sum_probs=147.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
+||+|||||++|+++|+.|++.|++|+|+|++..++..+++..+.++.++.+...+.. .........+....+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFSPNGDS 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEcCCCcE
Confidence 6999999999999999999999999999999987765555666677666666544321 11112233344444433
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecC-CCEEEcCEEEecCCCCcH
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN-GTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~-g~~~~ad~vV~A~G~~S~ 215 (294)
.. ... .......++|.++.+.|.+.+ .+++++++++|+++..+++++ .+.+.+ +.++++|+||+|+|.+|.
T Consensus 76 ~~-~~~----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 76 VE-IPI----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRV-VVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred EE-ecc----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEE-EEEEcCccEEEEeCEEEECCCcchH
Confidence 21 111 133456789999999998877 479999999999998877763 355443 357999999999999999
Q ss_pred hhhhcCCCCCccccceEEEEEEeCCCCCCCCCceEEEEe----CCeEEEEEEcCCCeEEEEEEEcCCC--CCCCchHHHH
Q 022652 216 IAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG----RGVRAGYVPVSPTKVYWFICHNNPT--PECPTQAQKL 289 (294)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~ 289 (294)
+++.+++..........++.....+......+...++++ ++.+.|++|+.++...+.+...... ...+...+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 229 (295)
T TIGR02032 150 VAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEEGEDLKKYLKDF 229 (295)
T ss_pred HHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCCCCCHHHHHHHH
Confidence 999887664222222334434443322111233444443 3578999999998776655544332 2224455555
Q ss_pred HHhc
Q 022652 290 LIRL 293 (294)
Q Consensus 290 ~~~~ 293 (294)
+..+
T Consensus 230 ~~~~ 233 (295)
T TIGR02032 230 LARR 233 (295)
T ss_pred HHhC
Confidence 5544
No 42
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.92 E-value=1.7e-22 Score=177.51 Aligned_cols=213 Identities=14% Similarity=0.202 Sum_probs=141.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC--CcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~--~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
.+||+|||||++|+++|+.|+++|++|+|+|+.+... ...++..+.+++.++|+++|+++++.........+.+....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 4799999999999999999999999999999998532 22234448889999999999999998766666666665432
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEE-cCCceEEEEec-CCC--EEEcCEEEec
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILELV-NGT--RIYANIVIGC 209 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~-~~~~~~~v~~~-~g~--~~~ad~vV~A 209 (294)
....+++.............+..+.+.|.+.+ .++.++++++++++.. ++++ ..|.+. +|+ ++++|+||+|
T Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGA 158 (390)
T TIGR02360 82 --QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGC 158 (390)
T ss_pred --EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEEC
Confidence 23334443222222222334667777777765 3778999998888865 3334 446665 675 6899999999
Q ss_pred CCCCcHhhhhcCCCC-Cccccc--eEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE-EEEEEEc
Q 022652 210 DGIRSPIAKWIGFSE-PKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV-YWFICHN 276 (294)
Q Consensus 210 ~G~~S~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~ 276 (294)
||.+|.+|++++... +.+.++ ..|+++...... .... ..+.+.+..+.++|+.++.. +|++..+
T Consensus 159 DG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 159 DGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPP--VSHE-LIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred CCCchhhHHhcCcccceeeeccCCcceEEEecCCCC--CCCc-eEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 999999999985443 233333 245554432211 1222 23445555556778764433 3444443
No 43
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.91 E-value=3.3e-22 Score=183.03 Aligned_cols=213 Identities=21% Similarity=0.320 Sum_probs=146.3
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
.+..+||+|||||++|+++|+.|+++|++|+|+||.+.+...++++.+.++++++|+++|+++++.+.............
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR 99 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC
Confidence 34678999999999999999999999999999999998877888999999999999999999988766554433333332
Q ss_pred CCcEEEEecCCCC--CCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEe--cCCC-EEEcCEE
Q 022652 135 DGRELRSFGFKDE--DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT-RIYANIV 206 (294)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~--~~g~-~~~ad~v 206 (294)
+ .....+..... ........+.+..+.+.|.+.+ ++++++++++|++++.+++++ .+.+ .++. ++++|+|
T Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v-~v~~~~~~g~~~i~ad~v 177 (547)
T PRK08132 100 D-EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGV-TLTVETPDGPYTLEADWV 177 (547)
T ss_pred C-CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEE-EEEEECCCCcEEEEeCEE
Confidence 2 23333333211 1112234577888888887765 468999999999999887763 3443 3454 6999999
Q ss_pred EecCCCCcHhhhhcCCCCCcccc-ceEEEEEEeCCCCCCCCCceEEEE----eCCeEEEEEEcCCCeEEE
Q 022652 207 IGCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIY----GRGVRAGYVPVSPTKVYW 271 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~ 271 (294)
|+|||.+|.+|+.+|+....... ...+........ ++......++ .++..+++.|.+++.+.+
T Consensus 178 VgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (547)
T PRK08132 178 IACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKA--DFPTERWFWFDPPFHPGQSVLLHRQPDNVWRI 245 (547)
T ss_pred EECCCCCcHHHHHcCCCCCCccccceEEEEEEEecC--CCCCeeeEEEeccCCCCcEEEEEeCCCCeEEE
Confidence 99999999999999876544322 111111122222 2222222233 345566677777665443
No 44
>PRK06834 hypothetical protein; Provisional
Probab=99.91 E-value=2.6e-22 Score=180.45 Aligned_cols=207 Identities=19% Similarity=0.196 Sum_probs=142.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-CcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..++++++++|+.+|+++.+...........+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~--- 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA--- 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee---
Confidence 35899999999999999999999999999999998654 34567889999999999999999887643332211110
Q ss_pred CcEEEEecCCCCCCC-cceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 136 GRELRSFGFKDEDAS-QEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
...+++...... .....+.+..+.+.|.+.+ .+++++++++|++++.++++ +.+++.+|+++++|+||+|||.
T Consensus 79 ---~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 79 ---ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred ---eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCC
Confidence 011111111111 2234567788888887766 37899999999999988877 4477788888999999999999
Q ss_pred CcHhhhhcCCCCCcccc-ceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcC-CCeEEEEEE
Q 022652 213 RSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVS-PTKVYWFIC 274 (294)
Q Consensus 213 ~S~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~ 274 (294)
+|.+|+.+|+..+.... +..+...+..+.. + . ............+.|.. ++...+++.
T Consensus 155 ~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~-~-~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 214 (488)
T PRK06834 155 RSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE-P-E--WGVHRDALGIHAFGRLEDEGPVRVMVT 214 (488)
T ss_pred CCCcHhhcCCCCCCCCcceEEEEEEEEecCC-C-C--cceeeCCCceEEEeccCCCCeEEEEEe
Confidence 99999999888665543 2233222222211 1 1 11233334445577776 554444443
No 45
>PRK06996 hypothetical protein; Provisional
Probab=99.91 E-value=2.9e-22 Score=176.71 Aligned_cols=208 Identities=20% Similarity=0.155 Sum_probs=146.4
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcC----CceEEEecCCCCC--CcCceEEEcccHHHHHHHcCCchhHHhccccccc
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLG----IGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G----~~V~vlE~~~~~~--~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 128 (294)
.++.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+. ...++..+++.+.++|+.+|+|+.. ..+...
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~---~~~~~~ 84 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD---ATPIEH 84 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc---CCcccE
Confidence 345789999999999999999999987 4799999986443 2457889999999999999999862 334444
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCC---CEEEc
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG---TRIYA 203 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~a 203 (294)
+.+......-...+.......+...+.+++..|.+.|.+.+ .++++++++++++++.++++ +.+.+.++ ++++|
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~a 163 (398)
T PRK06996 85 IHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLRA 163 (398)
T ss_pred EEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEee
Confidence 44443211111112222222233466799999999999887 36889999999999888777 44777754 58999
Q ss_pred CEEEecCCC-CcHhhhhcCCCC-CccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCe
Q 022652 204 NIVIGCDGI-RSPIAKWIGFSE-PKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTK 268 (294)
Q Consensus 204 d~vV~A~G~-~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 268 (294)
|+||+|||. +|.+|+.+++.. +..+++.++++.+..+. +.+......+...+++.++|++++.
T Consensus 164 ~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~G~~~~lp~~~~~ 228 (398)
T PRK06996 164 RIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA--PRPGWAWERFTHEGPLALLPLGGPR 228 (398)
T ss_pred eEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC--CCCCEEEEEecCCCCeEEeECCCCC
Confidence 999999996 578888886653 44567777777665432 2232222233344456688998765
No 46
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.90 E-value=1.6e-21 Score=171.58 Aligned_cols=210 Identities=19% Similarity=0.143 Sum_probs=138.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCce-EEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS-LTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~-~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
.++||+||||||||++||+.|++.|++|+|+||++.++....+ ..+.+..++.+......+ ....+.+..+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~~ 77 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFPG 77 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEecC
Confidence 5799999999999999999999999999999999988654433 444444433332111111 11222222232221
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.......+ ....+.++|..|.++|++.+ .|++++.+++++++..++++++.+...++.++.+++||+|+|.+
T Consensus 78 ~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 78 EKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred CceEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 11111111 14477899999999999877 58999999999999999888664555555689999999999999
Q ss_pred cHhhhhcCCCCCc-cccceEEEEEEeCCCCCCCCCceEEE-----EeCCeEEEEEEcCCCeEEEEEEEcCCC
Q 022652 214 SPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYI-----YGRGVRAGYVPVSPTKVYWFICHNNPT 279 (294)
Q Consensus 214 S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~ 279 (294)
|.+++.++..... ......+..+...+ ........+ ...+++.|+||..++...+.+......
T Consensus 152 s~l~~~lg~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~ 220 (396)
T COG0644 152 SALARKLGLKDRKPEDYAIGVKEVIEVP---DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD 220 (396)
T ss_pred hHHHHHhCCCCCChhheeEEeEEEEecC---CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC
Confidence 9999999887111 11112222222222 112222222 335789999999999888877654444
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.89 E-value=1.2e-20 Score=167.64 Aligned_cols=207 Identities=18% Similarity=0.222 Sum_probs=133.5
Q ss_pred ccCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-CcCceEEEcccHHHHHHHcCCchhHHhccccccceEEE
Q 022652 54 ADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK 132 (294)
Q Consensus 54 ~~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 132 (294)
....++||+||||||||+++|+.|+++|++|+|+|+..... ..|.++ + ...++++++++.+.. .....+.+.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i--~---~~~l~~lgl~~~~~~--~~i~~~~~~ 107 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAI--P---LCMVGEFDLPLDIID--RKVTKMKMI 107 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccc--c---HhHHhhhcCcHHHHH--HHhhhheEe
Confidence 34467999999999999999999999999999999986422 223333 2 466788888876543 233455555
Q ss_pred cCCCcEEEEecCCCC-CCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcC--CceEEEEecC-------C--
Q 022652 133 SEDGRELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILELVN-------G-- 198 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~--~~~~~v~~~~-------g-- 198 (294)
.+.+..+ .+... .......+++|..|.+.|.+.+ .|++++.+ +++++.... ++.+.|.+.+ |
T Consensus 108 ~p~~~~v---~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~ 183 (450)
T PLN00093 108 SPSNVAV---DIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP 183 (450)
T ss_pred cCCceEE---EecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCc
Confidence 5444322 22111 1122334689999999998877 48888765 577776432 2334455432 3
Q ss_pred CEEEcCEEEecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCC-CCCC-CceEEEEe----CCeEEEEEEcCCCeEEEE
Q 022652 199 TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QPFE-PKLNYIYG----RGVRAGYVPVSPTKVYWF 272 (294)
Q Consensus 199 ~~~~ad~vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~ 272 (294)
.+++||+||+|||.+|.+|+.++.... ....+++.....+.. ..+. +...++++ ++.+.|+||..+ ...+.
T Consensus 184 ~~v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG 260 (450)
T PLN00093 184 KTLEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVG 260 (450)
T ss_pred cEEEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEE
Confidence 479999999999999999999977532 222334333333321 1222 34555655 457899999985 44454
Q ss_pred EE
Q 022652 273 IC 274 (294)
Q Consensus 273 ~~ 274 (294)
+.
T Consensus 261 ~g 262 (450)
T PLN00093 261 TG 262 (450)
T ss_pred EE
Confidence 43
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.88 E-value=2.2e-20 Score=164.26 Aligned_cols=201 Identities=20% Similarity=0.340 Sum_probs=132.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecC-CCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~-~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
|||+||||||||+++|+.|++.|++|+|+|+. ..+...+. .+++ +.++.+++.+++... .+.+..+..+++.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~--~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGG--AIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSRV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcC--CcCH---hhhhhcCCchHHHhh--hcceeEEEcCCCc
Confidence 69999999999999999999999999999998 43332232 2333 567788887766542 4456666666553
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecC------C--CEEEcCEEE
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN------G--TRIYANIVI 207 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~------g--~~~~ad~vV 207 (294)
... ..... .......++|..|.+.|.+.+ .|++++.+ +|+++..++++ +.|.+.+ + .+++||+||
T Consensus 74 ~~~-~~~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~~v~~~~~~~~~~~~~~~i~a~~VI 148 (388)
T TIGR02023 74 PIK-VTIPS--EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-VTLTYRTPKKGAGGEKGSVEADVVI 148 (388)
T ss_pred eee-eccCC--CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-EEEEEEeccccCCCcceEEEeCEEE
Confidence 321 11111 111223689999999998876 48888655 69999877765 4465542 2 369999999
Q ss_pred ecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCC-CCCC-CceEEEEe----CCeEEEEEEcCCCeEEEEE
Q 022652 208 GCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QPFE-PKLNYIYG----RGVRAGYVPVSPTKVYWFI 273 (294)
Q Consensus 208 ~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 273 (294)
+|||.+|.+++.++...+ .....+++.....+.. ..++ +...++++ ++.++|++|..+ ...+.+
T Consensus 149 ~AdG~~S~v~r~lg~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~ 218 (388)
T TIGR02023 149 GADGANSPVAKELGLPKN-LPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGT 218 (388)
T ss_pred ECCCCCcHHHHHcCCCCC-CcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeE
Confidence 999999999999987632 2222344444433221 1122 33444443 467899999975 444444
No 49
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.88 E-value=3.8e-21 Score=159.12 Aligned_cols=226 Identities=19% Similarity=0.188 Sum_probs=169.2
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhc-cccccceEEEc
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKS 133 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~-~~~~~~~~~~~ 133 (294)
.+..+||+|||||.+|.++|+.|+|.|.+|.|+||+-.-...--+.-+.+.+...|.++|+.+.++.. .....++.++.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 34578999999999999999999999999999999864433334455677778999999999888764 44556666666
Q ss_pred CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecC--CC--EEEcCEE
Q 022652 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN--GT--RIYANIV 206 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~--g~--~~~ad~v 206 (294)
...+....++.............+...|.+.|.+++ +++++..+ .|+++.++++-+.+|++++ |+ +..|.+.
T Consensus 122 ~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLT 200 (509)
T KOG1298|consen 122 DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence 444444445555555556677789999999999887 68888766 5666766666555677654 33 5678999
Q ss_pred EecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCCCC
Q 022652 207 IGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPEC 282 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 282 (294)
|+|||.+|.+|+.+-.+... .--+.|.|++......+.++..++++++.....++|++..+.++.+-++.+.-+.
T Consensus 201 vVCDGcfSnlRrsL~~~~v~-~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Ps 275 (509)
T KOG1298|consen 201 VVCDGCFSNLRRSLCDPKVE-EVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPS 275 (509)
T ss_pred EEecchhHHHHHHhcCCccc-ccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCc
Confidence 99999999999999332211 1234456666655555667888999999999999999999999999888766554
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.87 E-value=3.9e-20 Score=160.35 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=112.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc----CceEEEcccHHHHHHHcCCchhHHhccccccceEEEc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~----g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 133 (294)
++||+||||||||+++|..|++. ++|+|+|+.+..... .++..+++++.+.|+.+|++......... ...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~---- 74 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIF---- 74 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-ccc----
Confidence 47999999999999999999999 999999998864322 25667899999999999986321110000 000
Q ss_pred CCCcEEEEecCCC---CCCCcceeeeeHHHHHHHHHhcC-CCCceEeCCceeEEEEcCCceEEEEe-cCCC--EEEcCEE
Q 022652 134 EDGRELRSFGFKD---EDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIV 206 (294)
Q Consensus 134 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~-~~v~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~v 206 (294)
.....+... .........++|.+|.+.|.+.. .++++++++.+++++.++++ +.|.+ .+|+ +++||+|
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~a~~v 149 (351)
T PRK11445 75 ----AVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-YHVIFRADGWEQHITARYL 149 (351)
T ss_pred ----eeeEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcEEEEEeCEE
Confidence 001111111 01122344699999999998765 57999999999999987776 44665 4564 6899999
Q ss_pred EecCCCCcHhhhhcCCC
Q 022652 207 IGCDGIRSPIAKWIGFS 223 (294)
Q Consensus 207 V~A~G~~S~~~~~~~~~ 223 (294)
|+|||.+|.+|++++..
T Consensus 150 V~AdG~~S~vr~~l~~~ 166 (351)
T PRK11445 150 VGADGANSMVRRHLYPD 166 (351)
T ss_pred EECCCCCcHHhHHhcCC
Confidence 99999999999998654
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.84 E-value=1.1e-18 Score=153.66 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=128.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
+||+||||||+|+++|+.|+++|++|+|+|+..... ..++..++ ...++++|+++.+.. ....+..+..+.+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~--~~i~~~~~~~p~~~~ 74 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIID--RRVTKMKMISPSNIA 74 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHH--hhhceeEEecCCceE
Confidence 589999999999999999999999999999986432 11222222 466788888766543 233445555544422
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEc--CCceEEEEe--cC-----C--CEEEcCE
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILEL--VN-----G--TRIYANI 205 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~--~~~~~~v~~--~~-----g--~~~~ad~ 205 (294)
. .+.... ........++|..|.+.|.+.+ .|++++.++ ++++... .++.+.|++ .+ | .+++||+
T Consensus 75 ~-~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 75 V-DIGRTL-KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred E-EeccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 2 111111 1122234689999999998877 488997774 7777532 223344443 21 2 3799999
Q ss_pred EEecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCC-CCCC-CceEEEEe----CCeEEEEEEcCCCeEEEEEE
Q 022652 206 VIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QPFE-PKLNYIYG----RGVRAGYVPVSPTKVYWFIC 274 (294)
Q Consensus 206 vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~~~ 274 (294)
||+|||.+|.+++.++.... .....+......+.. ..++ +...++++ ++++.|+||..+ ...+.+.
T Consensus 152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g 223 (398)
T TIGR02028 152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTG 223 (398)
T ss_pred EEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEE
Confidence 99999999999999986532 112233323333322 1222 34555554 467899999985 4445443
No 52
>PLN02697 lycopene epsilon cyclase
Probab=99.83 E-value=2.5e-18 Score=154.43 Aligned_cols=198 Identities=21% Similarity=0.329 Sum_probs=126.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
..+||+|||||++|+++|..|++.|++|+|+|+...... . ..++ ...++.+++.+.+... +....+...++
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~-n--~GvW---~~~l~~lgl~~~i~~~---w~~~~v~~~~~ 177 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-N--YGVW---EDEFKDLGLEDCIEHV---WRDTIVYLDDD 177 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC-c--cccc---hhHHHhcCcHHHHHhh---cCCcEEEecCC
Confidence 458999999999999999999999999999998643321 1 1122 2356777775544322 22222333333
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.... ....+..++|..|.+.|++.+ .|+++ ++++|+++..+++++..+.+.+|.++.|++||+|+|.+|
T Consensus 178 ~~~~--------~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 178 KPIM--------IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ceee--------ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 2211 122334689999999999877 37877 688999998877764435667788899999999999999
Q ss_pred HhhhhcCCC--CCccccceEEEEEEeCCCCCCCCCceEEEEe---------------CCeEEEEEEcCCCeEEE-EEEE
Q 022652 215 PIAKWIGFS--EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG---------------RGVRAGYVPVSPTKVYW-FICH 275 (294)
Q Consensus 215 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~-~~~~ 275 (294)
. +.++.. .+....+.++......... +++....++++ ...+.|++|++++++.+ ..++
T Consensus 249 ~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l 324 (529)
T PLN02697 249 G--RLLQYEVGGPRVCVQTAYGVEVEVENN-PYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCL 324 (529)
T ss_pred h--hhhccccCCCCcccEEEEEEEEEecCC-CCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeee
Confidence 4 222221 2333445555444444321 23322222222 12588999999988777 4444
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.83 E-value=2.7e-18 Score=152.48 Aligned_cols=167 Identities=24% Similarity=0.287 Sum_probs=106.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC-ceEEEcccHHHH-HHHcCCchhHHhccccccceEEEcC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-TSLTLFKNGWSV-LDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g-~~~~~~~~~~~~-l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
.++||+||||||+|+++|+.|+++|++|+|+||.+.++... .+..+.....+. +..+.....+ +.......+.+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPV-ERLITHEKLAFMTE 82 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcc-cceeeeeeEEEEcC
Confidence 46999999999999999999999999999999998775321 111222222221 1111000000 00111112233333
Q ss_pred CCcEEEEecCCC-CCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 135 DGRELRSFGFKD-EDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
.+.....+.... .......+.+.|.+|.+.|.+.+ .|++++.+++|+++..+++.++.+. .++.++.||+||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeC
Confidence 332211111111 11123456789999999998877 5899999999999987766544344 4566899999999999
Q ss_pred CCcHhhhhcCCCCC
Q 022652 212 IRSPIAKWIGFSEP 225 (294)
Q Consensus 212 ~~S~~~~~~~~~~~ 225 (294)
.+|.+++.+++..+
T Consensus 162 ~~s~l~~~lgl~~~ 175 (428)
T PRK10157 162 VNSILAEKLGMAKR 175 (428)
T ss_pred CCHHHHHHcCCCCC
Confidence 99999999987643
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.82 E-value=1.5e-18 Score=153.89 Aligned_cols=165 Identities=24% Similarity=0.282 Sum_probs=105.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC-ceEEEcccHHHHHHHcCCchh-HHhccccccceEEEcC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-TSLTLFKNGWSVLDALGVGSD-LRSQFLEIKGMAVKSE 134 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g-~~~~~~~~~~~~l~~lg~~~~-~~~~~~~~~~~~~~~~ 134 (294)
.++||+|||||+||+++|+.|+++|++|+|+||.+.++... .+..+.....+.+. .++... ..+.......+.+...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII-PGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc-ccccccCCccccccceeEEEEeC
Confidence 46999999999999999999999999999999998764321 12222222222220 022110 0011111122333333
Q ss_pred CCcEEEEecCCCC-CCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 135 DGRELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
++.....+..... ......+.+.|..|.+.|.+.+ .|++++.+++|+++..+++++..+.. ++.++.||+||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccC
Confidence 2222111111111 1122356789999999998776 48999999999999877666444544 445799999999999
Q ss_pred CCcHhhhhcCCC
Q 022652 212 IRSPIAKWIGFS 223 (294)
Q Consensus 212 ~~S~~~~~~~~~ 223 (294)
.+|.+++.++..
T Consensus 162 ~~s~v~~~lg~~ 173 (429)
T PRK10015 162 VNSMLGRSLGMV 173 (429)
T ss_pred cchhhhcccCCC
Confidence 999999998764
No 55
>PLN02463 lycopene beta cyclase
Probab=99.81 E-value=9.3e-18 Score=148.59 Aligned_cols=194 Identities=21% Similarity=0.320 Sum_probs=123.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
..+||+|||||+||+++|..|+++|++|.|+|+.+..... ....+ ..+.++.+|+.+.+...+. ...+...++
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p-~~~g~---w~~~l~~lgl~~~l~~~w~---~~~v~~~~~ 99 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP-NNYGV---WVDEFEALGLLDCLDTTWP---GAVVYIDDG 99 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc-cccch---HHHHHHHCCcHHHHHhhCC---CcEEEEeCC
Confidence 4689999999999999999999999999999997643211 11111 1345777888666543221 111111111
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.. ......+..++|.+|.+.|.+.+ .+++++ .++|++++.++++ +.|.+++|++++||+||+|+|.+|
T Consensus 100 ~~--------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 100 KK--------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred CC--------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence 10 01123455689999999998877 377875 5799999987766 558899998899999999999999
Q ss_pred HhhhhcCCCCCccccce-EEEEEEeCCCCCCCCCceEEE-------Ee---------C--CeEEEEEEcCCCeEEE
Q 022652 215 PIAKWIGFSEPKYVGHC-AYRGLGYYPNGQPFEPKLNYI-------YG---------R--GVRAGYVPVSPTKVYW 271 (294)
Q Consensus 215 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~---------~--~~~~~~~p~~~~~~~~ 271 (294)
.+.+. ..+...++. ++..++..+.. +++.....+ .+ . ..+.|.+|++++++.+
T Consensus 170 ~l~~~---~~~~~~g~Q~a~Gi~~ev~~~-p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v 241 (447)
T PLN02463 170 CLVQY---DKPFNPGYQVAYGILAEVDSH-PFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL 241 (447)
T ss_pred CccCC---CCCCCccceeeeeEEeecCCC-CcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence 87532 233334443 44333443321 222111111 11 0 2488999999988554
No 56
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.78 E-value=2.9e-17 Score=146.27 Aligned_cols=227 Identities=21% Similarity=0.209 Sum_probs=138.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcC---CceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchh--HHh-ccccccceEEEc
Q 022652 60 DIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD--LRS-QFLEIKGMAVKS 133 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G---~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~--~~~-~~~~~~~~~~~~ 133 (294)
||+|||||+||.++|..|++.+ ++|+|||+...+. .+-+.+..|....+++.+|+.+. +.. ......++.+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999998 8999999998653 56677888888889999999877 333 233444555543
Q ss_pred CC--Cc-EEEEecCCC----------------------------------------------CCCCcceeeeeHHHHHHH
Q 022652 134 ED--GR-ELRSFGFKD----------------------------------------------EDASQEVRAVERRILLET 164 (294)
Q Consensus 134 ~~--~~-~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~l~~~ 164 (294)
.. +. ....+.... .......++++|..+.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 11 11 111111000 001234568999999999
Q ss_pred HHhcC--CCCceEeCCceeEEEEcCCc-eEEEEecCCCEEEcCEEEecCCCCcHhhhhc-CCCCCccccc----eEEEEE
Q 022652 165 LANQL--PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFSEPKYVGH----CAYRGL 236 (294)
Q Consensus 165 L~~~~--~~v~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~-~~~~~~~~~~----~~~~~~ 236 (294)
|++.+ .|++++.+ +|+++..++++ +..|++++|++++||+||+|+|..|.+.+.. +.....+... .++...
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~ 238 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ 238 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence 99887 69999887 58888877665 4578999999999999999999999887663 2222222211 222222
Q ss_pred EeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCCCCCchHHHHHH
Q 022652 237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPECPTQAQKLLI 291 (294)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (294)
+.... +..........+.+|+|.+|++++... .+.+.......+...++++.
T Consensus 239 ~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~s~~~A~~~l~~ 290 (454)
T PF04820_consen 239 VPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFISDDEAEAELLA 290 (454)
T ss_dssp EE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTSHHHHHHHHHHH
T ss_pred cCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEeccccCCHHHHHHHHHH
Confidence 22222 334445566778899999999997766 55555444333333344433
No 57
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.76 E-value=2.8e-16 Score=137.21 Aligned_cols=189 Identities=23% Similarity=0.345 Sum_probs=120.4
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCceEEEecCCCCC-CcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 60 DIVIVGAGIAGLATAVSL--QRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L--~~~G~~V~vlE~~~~~~-~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
||+|||||+||+++|+.| ++.|++|+|||+.+... ...+.+...... ++..+.+. ...+....+...++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~------~~~~~~~v--~~~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKD------LGPLDSLV--SHRWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccc------ccchHHHH--heecCceEEEeCCC
Confidence 899999999999999999 78899999999987652 122222222211 11112221 12233444444433
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCC-CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.... ....+..+++.+|.+.|.+.+. +..++++++|++|+.++++ +.|.+++|.+++|++||+|+|..+.
T Consensus 73 ~~~~--------~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 73 SRIL--------IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDG-VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred ceEE--------cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCce-EEEEECCCCEEEeeEEEECCCcccc
Confidence 3221 1245668999999999999884 5567889999999988875 4589999999999999999996665
Q ss_pred hhhhcCCCCCccccceEEEEEE-eCCCCCCCCC---ce-EEEEeC----CeEEEEEEcCCCeEEEEEE
Q 022652 216 IAKWIGFSEPKYVGHCAYRGLG-YYPNGQPFEP---KL-NYIYGR----GVRAGYVPVSPTKVYWFIC 274 (294)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~-~~~~~~----~~~~~~~p~~~~~~~~~~~ 274 (294)
. ....+...+.|+. ..+.+ .|+. .+ .+...+ -.++|.+|+++++..+=.+
T Consensus 144 ~--------~~~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T 202 (374)
T PF05834_consen 144 K--------ARPLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEET 202 (374)
T ss_pred c--------ccccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEE
Confidence 2 1122233334433 33222 2331 11 112222 3688899999998777433
No 58
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.75 E-value=3.8e-16 Score=137.55 Aligned_cols=142 Identities=21% Similarity=0.295 Sum_probs=93.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcEE
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL 139 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
||+|||||++|+++|+.|++.|++|+|||+.+... ....+.++.. .++.+++.+.+.. .+.........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~-- 71 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDD---DLSDLGLADCVEH---VWPDVYEYRFPKQ-- 71 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHh---hhhhhchhhHHhh---cCCCceEEecCCc--
Confidence 79999999999999999999999999999987542 2222333222 2333443221111 1111111111110
Q ss_pred EEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhh
Q 022652 140 RSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~ 217 (294)
..........+++..|.+.|.+.+ .+++++ ..+|+++..+++..+.|.+.+|++++|++||+|+|.+|.++
T Consensus 72 ------~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~ 144 (388)
T TIGR01790 72 ------PRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQ 144 (388)
T ss_pred ------chhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcc
Confidence 001133455689999999998877 367775 66899988774544668888888899999999999999654
No 59
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.73 E-value=6.8e-17 Score=133.21 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=97.6
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc--Cce-----EEEcccHHHHHHHcCCchhHHhcccccc
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--GTS-----LTLFKNGWSVLDALGVGSDLRSQFLEIK 127 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~--g~~-----~~~~~~~~~~l~~lg~~~~~~~~~~~~~ 127 (294)
....+||+|||||++|+++|+.|++.|++|+|+|+...++.+ +.+ ..+......+++++|+...
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~--------- 92 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK--------- 92 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce---------
Confidence 345789999999999999999999999999999999876421 111 1222333445555554210
Q ss_pred ceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCC-ceEEEEec--------
Q 022652 128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELV-------- 196 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~-~~~~v~~~-------- 196 (294)
.. ....+.+++.++...|.+.+ .|++++++++|+++..+++ .+.++...
T Consensus 93 -----~~---------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g 152 (257)
T PRK04176 93 -----EV---------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG 152 (257)
T ss_pred -----ee---------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence 00 01123467888888888776 5899999999999987665 44444432
Q ss_pred ---CCCEEEcCEEEecCCCCcHhhhhc
Q 022652 197 ---NGTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 197 ---~g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
+..++.|+.||+|+|.++.+.+.+
T Consensus 153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 153 LHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 124799999999999999988877
No 60
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.72 E-value=5e-16 Score=130.23 Aligned_cols=215 Identities=19% Similarity=0.212 Sum_probs=155.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCC--C-------CcCceEEEcccHHHHHHHcCCchhHHh-c
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSL--R-------TGGTSLTLFKNGWSVLDALGVGSDLRS-Q 122 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~----G~~V~vlE~~~~~--~-------~~g~~~~~~~~~~~~l~~lg~~~~~~~-~ 122 (294)
..+||+|||||++|+++|..|... -++|.|+|....+ + -..+...+++.+...++.+|.|+.+.. .
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 489999999999999999999864 4699999988432 1 134456778889999999999998865 3
Q ss_pred cccccceEEEcCCCcEEEEecCCCCCCC-cceeeeeHHHHHHHHHh-----cCCCCceEeCCceeEEEEc------CCc-
Q 022652 123 FLEIKGMAVKSEDGRELRSFGFKDEDAS-QEVRAVERRILLETLAN-----QLPPESVQFSSELAKIETS------GNG- 189 (294)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~-----~~~~v~i~~~~~v~~i~~~------~~~- 189 (294)
.....++..++........++. +... ...++++...+...|.. .-+++++...+++...... +++
T Consensus 115 ~~~~~~~~v~Ds~s~a~I~~~~--d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSAALILFDH--DNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred cccccceeeecccchhhhhhcc--ccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 4556667776654443333322 2222 23456777777666663 2257899999998887652 223
Q ss_pred eEEEEecCCCEEEcCEEEecCCCCcHhhhhcCCCCCcc-ccceEEEEEEeCCCCCCCC-CceEEEEeCCeEEEEEEcCCC
Q 022652 190 VTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYVPVSPT 267 (294)
Q Consensus 190 ~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~ 267 (294)
...+.+.+|..+.+|++|+|+|.+|.+|+..+++.+.+ +.+++..+........... ..++.|...|+.+ +.|+++.
T Consensus 193 ~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiA-llpl~d~ 271 (481)
T KOG3855|consen 193 WFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIA-LLPLSDT 271 (481)
T ss_pred eEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCcee-ecccccc
Confidence 34688889999999999999999999999999998777 4456666666666533333 6778888888887 9999997
Q ss_pred eEEEEEE
Q 022652 268 KVYWFIC 274 (294)
Q Consensus 268 ~~~~~~~ 274 (294)
-...++.
T Consensus 272 ~s~LvWS 278 (481)
T KOG3855|consen 272 LSSLVWS 278 (481)
T ss_pred cccceee
Confidence 5554443
No 61
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.72 E-value=1.7e-16 Score=149.92 Aligned_cols=140 Identities=24% Similarity=0.316 Sum_probs=104.1
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCcCceEEEcccHHHHHHHcC--CchhHHhccccccceEEEcCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALG--VGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg--~~~~~~~~~~~~~~~~~~~~~ 135 (294)
+|+|||||++|+++|+.|+++ |++|+|+|+++.....|.++.+++++.+.|+.++ +...+...........+.. .
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~ 80 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-K 80 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE-C
Confidence 799999999999999999998 8999999999977777889999999988888776 2223322222233333332 2
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
+..... .+..+..+.|.+|.+.|.+.+ .+++++++++|+++... ...+|+||+|||.+
T Consensus 81 g~~~~~-------~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~-------------~~~~D~VVgADG~~ 140 (765)
T PRK08255 81 GRRIRS-------GGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL-------------AADADLVIASDGLN 140 (765)
T ss_pred CEEEEE-------CCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh-------------hcCCCEEEEcCCCC
Confidence 222111 123344688999999999887 38999999988765310 14799999999999
Q ss_pred cHhhhhc
Q 022652 214 SPIAKWI 220 (294)
Q Consensus 214 S~~~~~~ 220 (294)
|.+|+++
T Consensus 141 S~vR~~~ 147 (765)
T PRK08255 141 SRIRTRY 147 (765)
T ss_pred HHHHHHH
Confidence 9999987
No 62
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.71 E-value=3.9e-16 Score=128.28 Aligned_cols=136 Identities=20% Similarity=0.318 Sum_probs=95.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC--ceE-----EEcccHHHHHHHcCCchhHHhccccccc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG--TSL-----TLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g--~~~-----~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 128 (294)
...+||+|||||++|+++|+.|+++|++|+|+||...++.+. .+. .+.....++++++|+..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~----------- 87 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRY----------- 87 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCe-----------
Confidence 357999999999999999999999999999999998764211 111 11122334444444320
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCC--ceEEEEec--------
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN--GVTILELV-------- 196 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~--~~~~v~~~-------- 196 (294)
.. ........++.++.+.|.+.+ .++++++++.|.++..+++ .+.+|.+.
T Consensus 88 ---~~---------------~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g 149 (254)
T TIGR00292 88 ---ED---------------EGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG 149 (254)
T ss_pred ---ee---------------ccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence 00 011233457788888888766 4899999999999988766 35555553
Q ss_pred ---CCCEEEcCEEEecCCCCcHhhhhc
Q 022652 197 ---NGTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 197 ---~g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
+...+.|++||+|+|..+.+.+.+
T Consensus 150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 150 LHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 123789999999999999876666
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.69 E-value=5e-15 Score=128.92 Aligned_cols=189 Identities=23% Similarity=0.295 Sum_probs=112.3
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
||+|||||+||+++|+.|++. |++|+|+|+.+... +...+.++.......... ..+.+ ....+..+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~-~~~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG-GNHTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC-Ccccceecccccchhhhh-hhhhh--heEeCCCCEEECcchh
Confidence 799999999999999999987 99999999987442 222222221111000000 00010 1122223333322111
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~ 217 (294)
......+..+.+.+|.+.+.+.+.. .++++++|+++ ++++ |.+.+|++++||+||+|+|.+|..
T Consensus 77 ---------~~l~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v--~~~~---v~l~dg~~~~A~~VI~A~G~~s~~- 140 (370)
T TIGR01789 77 ---------RKLKTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGL--DADG---VDLAPGTRINARSVIDCRGFKPSA- 140 (370)
T ss_pred ---------hhcCCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEE--eCCE---EEECCCCEEEeeEEEECCCCCCCc-
Confidence 1112455789999999999888743 38889999988 3444 344788899999999999988752
Q ss_pred hhcCCCCCccccceEEEEEE-eCCCCCCCCCc--eEE-E-E--eCC-eEEEEEEcCCCeEEEEEEEcC
Q 022652 218 KWIGFSEPKYVGHCAYRGLG-YYPNGQPFEPK--LNY-I-Y--GRG-VRAGYVPVSPTKVYWFICHNN 277 (294)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~-~--~~~-~~~~~~p~~~~~~~~~~~~~~ 277 (294)
..+.++..+.|+. ... .+++.. ..+ + + .++ .+++++|+++++..|=.++-.
T Consensus 141 -------~~~~~~Q~f~G~~~r~~--~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s 199 (370)
T TIGR01789 141 -------HLKGGFQVFLGREMRLQ--EPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYA 199 (370)
T ss_pred -------cccceeeEEEEEEEEEc--CCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEecc
Confidence 2224555555543 222 223321 111 1 2 233 455569999999888544433
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.68 E-value=3.6e-16 Score=131.59 Aligned_cols=161 Identities=20% Similarity=0.272 Sum_probs=103.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-----CcCceEEEccc--HHHHHHHcCCc-h---hHHhcccc
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-----TGGTSLTLFKN--GWSVLDALGVG-S---DLRSQFLE 125 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-----~~g~~~~~~~~--~~~~l~~lg~~-~---~~~~~~~~ 125 (294)
+.+||+|||||+||++||..++++|.+|+|||+++.++ .+|..+.+... -.+++....-. . .....+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 46899999999999999999999999999999998764 23333333221 23333333210 0 01111222
Q ss_pred ccceEEEcCCCcEEEEecCCCCCCCcceee-eeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEE
Q 022652 126 IKGMAVKSEDGRELRSFGFKDEDASQEVRA-VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIY 202 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 202 (294)
.+.+.+....|-....- ..+..+.. .....+++.|+.++ .||+++.+++|.+++.++++ ..+.+.+|+++.
T Consensus 82 ~d~i~~~e~~Gi~~~e~-----~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~ 155 (408)
T COG2081 82 EDFIDWVEGLGIALKEE-----DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVK 155 (408)
T ss_pred HHHHHHHHhcCCeeEEc-----cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEE
Confidence 22222222222211111 11222222 45668888888887 59999999999999998865 569999998899
Q ss_pred cCEEEecCCCCcH-----------hhhhcCCC
Q 022652 203 ANIVIGCDGIRSP-----------IAKWIGFS 223 (294)
Q Consensus 203 ad~vV~A~G~~S~-----------~~~~~~~~ 223 (294)
||.+|+|+|..|. +.+++|..
T Consensus 156 ~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~ 187 (408)
T COG2081 156 CDSLILATGGKSWPKLGSTGFGYPIARQFGHT 187 (408)
T ss_pred ccEEEEecCCcCCCCCCCCchhhHHHHHcCCc
Confidence 9999999997663 56666655
No 65
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.67 E-value=8.4e-16 Score=119.36 Aligned_cols=135 Identities=24% Similarity=0.303 Sum_probs=92.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc---C----ceEEEcccHHHHHHHcCCchhHHhccccccc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG---G----TSLTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~---g----~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 128 (294)
..++||+||||||+|+++|++|++.|++|.|+|++..++.+ | ..+.+...+..+|+++|+.-+-
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~--------- 85 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEE--------- 85 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE---------
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEE---------
Confidence 35799999999999999999999999999999999877532 1 1256677788899988873110
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcC-CceEEEEec------CC-
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG-NGVTILELV------NG- 198 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~-~~~~~v~~~------~g- 198 (294)
.....+..+..++...|..++ +|++|+-.+.|.++...+ +++.+|... .+
T Consensus 86 --------------------~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl 145 (230)
T PF01946_consen 86 --------------------YGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL 145 (230)
T ss_dssp ---------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--
T ss_pred --------------------eCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc
Confidence 023355678888888887665 699999999999988776 555455442 12
Q ss_pred ----CEEEcCEEEecCCCCcHhhhh
Q 022652 199 ----TRIYANIVIGCDGIRSPIAKW 219 (294)
Q Consensus 199 ----~~~~ad~vV~A~G~~S~~~~~ 219 (294)
..+++++||+|||+-+.+.+.
T Consensus 146 HvDPl~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 146 HVDPLTIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp T-B-EEEEESEEEE---SSSSSTSH
T ss_pred CCCcceEEEeEEEeCCCCchHHHHH
Confidence 379999999999998865433
No 66
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.7e-15 Score=115.86 Aligned_cols=135 Identities=18% Similarity=0.274 Sum_probs=102.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC--c-----eEEEcccHHHHHHHcCCchhHHhccccccce
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG--T-----SLTLFKNGWSVLDALGVGSDLRSQFLEIKGM 129 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g--~-----~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~ 129 (294)
...||+||||||+||+||++|+++|++|+|+||+-.++.+- . .+.+...+.++|+++|+.-+-.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~--------- 99 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEE--------- 99 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceec---------
Confidence 35799999999999999999999999999999998775321 1 1345667788888888742111
Q ss_pred EEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCC-ceEEEEec----------
Q 022652 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELV---------- 196 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~-~~~~v~~~---------- 196 (294)
....+..+..++...|+.++ .|++|+..+.|.++...++ ++.+|...
T Consensus 100 --------------------e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh 159 (262)
T COG1635 100 --------------------EDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH 159 (262)
T ss_pred --------------------CCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc
Confidence 22355678888888887766 4899999999999887766 55554442
Q ss_pred -CCCEEEcCEEEecCCCCcHhhhhc
Q 022652 197 -NGTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 197 -~g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
|-..+++++||.|||....+.+.+
T Consensus 160 vDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 160 VDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cCcceeeEEEEEeCCCCchHHHHHH
Confidence 123689999999999998776665
No 67
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.65 E-value=6.1e-16 Score=135.17 Aligned_cols=141 Identities=27% Similarity=0.364 Sum_probs=78.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEcc-----------------cHHHHHHHcCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFK-----------------NGWSVLDALGV 115 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~~-----------------~~~~~l~~lg~ 115 (294)
|||+|||||+||++||+.|++.|.+|+|+||++.++. +|+. .+.. -....++.++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 7999999999999999999999999999999987641 2332 2211 01223333322
Q ss_pred chhHHhccccccceEEEc-CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEE
Q 022652 116 GSDLRSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTI 192 (294)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~ 192 (294)
.+ +..... ..++.... .+++.. ...-...++.+.|.+.+ .+++++++++|.+++.++++.+.
T Consensus 80 ~d-~~~ff~-~~Gv~~~~~~~gr~f-------------P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~ 144 (409)
T PF03486_consen 80 ED-LIAFFE-ELGVPTKIEEDGRVF-------------PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFG 144 (409)
T ss_dssp HH-HHHHHH-HTT--EEE-STTEEE-------------ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEE
T ss_pred HH-HHHHHH-hcCCeEEEcCCCEEC-------------CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeE
Confidence 11 111111 11222211 222211 01124567777777766 38999999999999998888788
Q ss_pred EEecCCCEEEcCEEEecCCCCcH
Q 022652 193 LELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 193 v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
|+++++.++.||.||+|+|..|.
T Consensus 145 v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 145 VKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp EEETTTEEEEESEEEE----SSS
T ss_pred eeccCcccccCCEEEEecCCCCc
Confidence 99977778999999999998763
No 68
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.61 E-value=1.3e-14 Score=126.03 Aligned_cols=72 Identities=25% Similarity=0.364 Sum_probs=56.7
Q ss_pred ceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh-hhhcCCCC
Q 022652 152 EVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIGFSE 224 (294)
Q Consensus 152 ~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~-~~~~~~~~ 224 (294)
....++...+.+.|.+.+ .|++++.+++|+++..+++++.+|++.+|+ +.+|.||+|+|.++.. ...++...
T Consensus 140 ~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~ 214 (358)
T PF01266_consen 140 EGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDL 214 (358)
T ss_dssp TEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSS
T ss_pred ccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccccc
Confidence 344688999999998877 589999999999999998886569999997 9999999999999864 44445543
No 69
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.60 E-value=1.2e-13 Score=121.32 Aligned_cols=167 Identities=20% Similarity=0.226 Sum_probs=97.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc----CceEEEc---c-cH--HHHHHHcCCchhHHhcc----c
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG----GTSLTLF---K-NG--WSVLDALGVGSDLRSQF----L 124 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~----g~~~~~~---~-~~--~~~l~~lg~~~~~~~~~----~ 124 (294)
+||+|||||++|+++|++|+++|++|+|+|+....... +.+..+. . .. ....+.+.++.++.+.. .
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 59999999999999999999999999999997643211 1111110 0 00 01112222333332110 0
Q ss_pred cccceEEEc-CC--------------CcEEEEecCC---------C-CC-----CCcceeeeeHHHHHHHHHhcC--CCC
Q 022652 125 EIKGMAVKS-ED--------------GRELRSFGFK---------D-ED-----ASQEVRAVERRILLETLANQL--PPE 172 (294)
Q Consensus 125 ~~~~~~~~~-~~--------------~~~~~~~~~~---------~-~~-----~~~~~~~~~~~~l~~~L~~~~--~~v 172 (294)
...+..+.. .. +.....++.. . .. .......++...+.+.|.+.+ .|+
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~ 160 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGA 160 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCC
Confidence 011111111 10 1000000000 0 00 011123578888888887765 489
Q ss_pred ceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC-cHhhhhcCCCCCcc
Q 022652 173 SVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR-SPIAKWIGFSEPKY 227 (294)
Q Consensus 173 ~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~-S~~~~~~~~~~~~~ 227 (294)
+++++++|+++..+++. +.|.+.++ ++.+|.||+|+|.+ +.+++.++...|..
T Consensus 161 ~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~~ 214 (380)
T TIGR01377 161 TVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPLQ 214 (380)
T ss_pred EEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCce
Confidence 99999999999887665 45777766 69999999999998 45777777655543
No 70
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.59 E-value=1.4e-13 Score=120.74 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=48.5
Q ss_pred eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.++...+...+.+.+ .|++++++++|+++..++++ +.|.+++| ++.+|.||+|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 467778887776655 48999999999999987665 56888877 6999999999999875
No 71
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=119.95 Aligned_cols=167 Identities=23% Similarity=0.326 Sum_probs=103.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCCc---Cc------eEEEcccHH-------------HHHHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTG---GT------SLTLFKNGW-------------SVLDA 112 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~~~~~---g~------~~~~~~~~~-------------~~l~~ 112 (294)
.++||+|||||+.|+++|++|++++ ++|+|+||.+.+... .+ ++...+... ++-++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998 999999998866421 11 111222211 01111
Q ss_pred cCCchh----------------HH---hccccccceE-EEcCCCcEEEEecCCCC------CCCcceeeeeHHHHHHHHH
Q 022652 113 LGVGSD----------------LR---SQFLEIKGMA-VKSEDGRELRSFGFKDE------DASQEVRAVERRILLETLA 166 (294)
Q Consensus 113 lg~~~~----------------~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~ 166 (294)
+++.-. +. +... ..++. +...+...+..+...-. ........++..++...|+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGK-ANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHh-hCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 221000 00 0000 00000 01111111111111000 1122334588889999998
Q ss_pred hcC--CCCceEeCCceeEEEEcCCceEEEEecCCCE-EEcCEEEecCCCCcH-hhhhcCCCC
Q 022652 167 NQL--PPESVQFSSELAKIETSGNGVTILELVNGTR-IYANIVIGCDGIRSP-IAKWIGFSE 224 (294)
Q Consensus 167 ~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~-~~ad~vV~A~G~~S~-~~~~~~~~~ 224 (294)
+.+ .|+++++|++|+++++++++++.+.+.+|++ ++|+.||+|.|..|. +.+++|++.
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 887 6999999999999999998656688888876 999999999999984 677777765
No 72
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.57 E-value=1.8e-13 Score=120.66 Aligned_cols=68 Identities=24% Similarity=0.479 Sum_probs=55.4
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH-hhhhcCCC
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFS 223 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~-~~~~~~~~ 223 (294)
..++...+.+.|.+.+ .|++++++++|+++..++++ +.|.+.++ ++.+|.||+|+|.+|. +.+.+|..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4578889999998776 48999999999999877665 55778777 6999999999999984 66666654
No 73
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.57 E-value=3.9e-14 Score=126.35 Aligned_cols=189 Identities=20% Similarity=0.250 Sum_probs=100.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHh-ccccccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~-~~~~~~~~~~~~~~ 135 (294)
..++|+|||||++||++|.+|++.|++|+|+|+.+.++ | .+...+.... +.+++...... ....+..+....+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G-~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--G-LWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--c-eeecCCCcCC--CccccCCCCcccchhhhhhhhccCCH
Confidence 46799999999999999999999999999999998763 2 2222221100 00111100000 00000000000000
Q ss_pred C-cEEEEecCCCCC---CCcceeeeeHHHHHHHHHhcC--CCCc--eEeCCceeEEEEcCCceEEEEecCC--C--EEEc
Q 022652 136 G-RELRSFGFKDED---ASQEVRAVERRILLETLANQL--PPES--VQFSSELAKIETSGNGVTILELVNG--T--RIYA 203 (294)
Q Consensus 136 ~-~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~--~~v~--i~~~~~v~~i~~~~~~~~~v~~~~g--~--~~~a 203 (294)
. .....+++.... ...........++.+.|.+.+ .++. |+++++|+++...+++ |.|.+.++ . +..+
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIF 162 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEc
Confidence 0 000011111100 000011235567777776665 2555 8999999999887554 77777543 2 4578
Q ss_pred CEEEecCCCCcHhhhhcCCCCCccccceEEEEE----EeCCCCCCCCCceEEEEeCCe
Q 022652 204 NIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGL----GYYPNGQPFEPKLNYIYGRGV 257 (294)
Q Consensus 204 d~vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 257 (294)
|.||+|+|.++.- ..|..+|...|.|. ..+.....+.+...+++|.|.
T Consensus 163 d~VIvAtG~~~~P------~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~ 214 (461)
T PLN02172 163 DAVVVCNGHYTEP------NVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFA 214 (461)
T ss_pred CEEEEeccCCCCC------cCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCc
Confidence 9999999987642 12333333333332 223333345566666666653
No 74
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.2e-13 Score=121.10 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=110.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
...+||+|||||++|+++|++|.++|.+ ++|+||+..++..-. ...+.++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~------------------------~~ry~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR------------------------YNRYPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch------------------------hccCCceEECCc
Confidence 4578999999999999999999999998 999999987632100 001112222211
Q ss_pred CCcEEEEecCCCCC-CCcceeee-eHHHHHHHHHhcCCCCceEeCCceeEEEEcCC-ceEEEEecCCCE--EEcCEEEec
Q 022652 135 DGRELRSFGFKDED-ASQEVRAV-ERRILLETLANQLPPESVQFSSELAKIETSGN-GVTILELVNGTR--IYANIVIGC 209 (294)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~-~~~~v~~~~g~~--~~ad~vV~A 209 (294)
. ....+++.+.. ........ -+..+...+.+.....++.+++.|+.+..+++ ..|.|+++++.. +.||.||+|
T Consensus 62 ~--~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~A 139 (443)
T COG2072 62 K--WLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVA 139 (443)
T ss_pred h--heeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEe
Confidence 1 11122222211 01111112 23444444444334567888888888887765 368899988865 459999999
Q ss_pred CCCCcHhhhhcCCCCCccccceEEEEEEeCC----CCCCCCCceEEEEeCCeEE
Q 022652 210 DGIRSPIAKWIGFSEPKYVGHCAYRGLGYYP----NGQPFEPKLNYIYGRGVRA 259 (294)
Q Consensus 210 ~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 259 (294)
+|.++. ...|.+.|...|.|...++ ....+.+....++|.|.++
T Consensus 140 TG~~~~------P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 140 TGHLSE------PYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred ecCCCC------CCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 999776 3567788887777766554 3445667788888887655
No 75
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.55 E-value=5.5e-13 Score=118.23 Aligned_cols=112 Identities=15% Similarity=-0.002 Sum_probs=68.9
Q ss_pred eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEc-CCceEEEEecCCCEEEcCEEEecCCCCc-HhhhhcCCCCCccccc
Q 022652 155 AVERRILLETLANQL--PPESVQFSSELAKIETS-GNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFSEPKYVGH 230 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~ad~vV~A~G~~S-~~~~~~~~~~~~~~~~ 230 (294)
.++...+...|++.+ .|++++.+++|++++.. ++.++.|++.+| ++.++.||+|+|.++ .+.+.++...|..+..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~ 257 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIESHP 257 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCccc
Confidence 356667777776665 48999999999999764 345556788777 599999888888776 5666667665543322
Q ss_pred eEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022652 231 CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF 272 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 272 (294)
..+ +.. ++..+.... .+...+..+++.|..++++.+.
T Consensus 258 ~~~--~~~-~~~~~~~~~--~~~~~~~~~y~~p~~~g~~~ig 294 (407)
T TIGR01373 258 LQA--LVS-EPLKPIIDT--VVMSNAVHFYVSQSDKGELVIG 294 (407)
T ss_pred ceE--EEe-cCCCCCcCC--eEEeCCCceEEEEcCCceEEEe
Confidence 211 111 111111111 2233344556888887765554
No 76
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.55 E-value=1.1e-12 Score=119.16 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCC----CEEEcCEEEecCCCCcH-hhhhc-CCC
Q 022652 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSP-IAKWI-GFS 223 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~ad~vV~A~G~~S~-~~~~~-~~~ 223 (294)
+++...+...+++.+ .|++++.+++|+++..+++. +.|.+.++ .++.|+.||+|+|.|+. +.+.+ |..
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~ 226 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSN 226 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence 467778877777665 58999999999999887654 55666554 25899999999999985 44534 543
No 77
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.54 E-value=1.4e-12 Score=118.37 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=49.0
Q ss_pred eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecC---CC--EEEcCEEEecCCCCcH-hhhhc-CC
Q 022652 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDGIRSP-IAKWI-GF 222 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G~~S~-~~~~~-~~ 222 (294)
.++...+...+++.+ .|++++.+++|+++..+++. +.|.+.+ |+ ++.|+.||+|+|.|+. +.+.+ +.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~ 226 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGL 226 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCC
Confidence 356677777776555 58999999999999876554 5566543 43 6899999999999985 43433 54
No 78
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.54 E-value=3.1e-13 Score=126.62 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=51.3
Q ss_pred eeeHHHHHHHHHhcCC-CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 155 AVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~~-~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.+++..+.+.|.+.+. |++++++++|+++..++++ +.|.+.++..+.+|.||+|+|.++.
T Consensus 404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCcc
Confidence 5788899999988874 6899999999999887766 5588888877889999999999985
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.54 E-value=5.8e-13 Score=118.22 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=49.6
Q ss_pred eeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCC-----CEEEcCEEEecCCCCcH-hhhhcCCCCC
Q 022652 156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG-----TRIYANIVIGCDGIRSP-IAKWIGFSEP 225 (294)
Q Consensus 156 ~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~ad~vV~A~G~~S~-~~~~~~~~~~ 225 (294)
++...+...|.+.+ .|++++++++|++++.++++ +.+.+.++ .++++|.||+|+|.|+. +...++...+
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~ 270 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVN 270 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCCc
Confidence 45567777777666 48999999999999876665 33544332 36899999999999985 4445554433
No 80
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.54 E-value=4.3e-14 Score=121.24 Aligned_cols=144 Identities=20% Similarity=0.267 Sum_probs=88.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEE-ecCCCCCCcCceEEEcccH----HHHHHHcCCchhHHhccccccceEEEcC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI-EQADSLRTGGTSLTLFKNG----WSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vl-E~~~~~~~~g~~~~~~~~~----~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
||+|||||.||+.||+.+++.|.+|+|+ ++.+....-+..-++...+ .+.++.+|-. .-...+...+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~---m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL---MGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S---HHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH---HHHHHhHhhhhhhcc
Confidence 7999999999999999999999999999 4444333222222222222 2334445421 111222223322221
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
+.. ..........+++|..+.+.+.+.+ +++++. ..+|+++..+++.+++|.+.+|+.+.+|.||+|+|
T Consensus 78 N~s-------kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTG 149 (392)
T PF01134_consen 78 NRS-------KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATG 149 (392)
T ss_dssp STT-------S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred ccc-------CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecc
Confidence 100 0111123345799999988887766 578885 67999999988888899999999999999999999
Q ss_pred CCc
Q 022652 212 IRS 214 (294)
Q Consensus 212 ~~S 214 (294)
.+.
T Consensus 150 tfl 152 (392)
T PF01134_consen 150 TFL 152 (392)
T ss_dssp TGB
T ss_pred ccc
Confidence 943
No 81
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.54 E-value=1.3e-13 Score=124.42 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=90.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC-CCCCcCceEEEcc----cHHHHHHHcCC-chhHHhccccccceE
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLTLFK----NGWSVLDALGV-GSDLRSQFLEIKGMA 130 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~-~~~~~g~~~~~~~----~~~~~l~~lg~-~~~~~~~~~~~~~~~ 130 (294)
.+|||+|||||+||+.||+.+++.|.+|+|+|+.. .++.-++.-.+.. ...+.++.+|- .....+.. .. ...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-gi-q~r 80 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GI-QFR 80 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cC-cee
Confidence 46999999999999999999999999999999874 2221111101111 11222333331 11111100 00 011
Q ss_pred EEc-CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEE
Q 022652 131 VKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (294)
Q Consensus 131 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (294)
+.. ..|... ......+++..+.+.|.+.+ ++++++ ...|+++..+++.+.+|.+.+|..+.|+.|
T Consensus 81 ~ln~skGpAV----------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~V 149 (618)
T PRK05192 81 MLNTSKGPAV----------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAV 149 (618)
T ss_pred ecccCCCCce----------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEE
Confidence 111 111100 11123578888888886655 467774 667999887777777889999999999999
Q ss_pred EecCCCCcH
Q 022652 207 IGCDGIRSP 215 (294)
Q Consensus 207 V~A~G~~S~ 215 (294)
|+|+|.++.
T Consensus 150 IlATGTFL~ 158 (618)
T PRK05192 150 VLTTGTFLR 158 (618)
T ss_pred EEeeCcchh
Confidence 999998764
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.51 E-value=5.9e-14 Score=112.40 Aligned_cols=171 Identities=23% Similarity=0.266 Sum_probs=83.6
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-eEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcEEE
Q 022652 62 VIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELR 140 (294)
Q Consensus 62 vIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (294)
+|||||++||++|..|.++|++ |+|+|+.+.++..-. +.... ..+...........+.+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~------------~~~~~-~~~~~~~~~~~~~~~~~-----~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR------------RYYSY-TRLHSPSFFSSDFGLPD-----FE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH------------CH-TT-TT-BSSSCCTGGSS--C-----CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE------------EeCCC-CccccCccccccccCCc-----cc
Confidence 7999999999999999999999 999999987632110 00000 00000000000000000 00
Q ss_pred EecCCCC-CCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhh
Q 022652 141 SFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 141 ~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~ 217 (294)
.+.+... ............++.+.|.+.+ .+.+++++++|+++.+++++ |.|++.+++++.||.||+|+|..+..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeeccCCCC
Confidence 0000000 0000111245555555554444 27789999999999999888 889999998899999999999876532
Q ss_pred hhcCCCCCcccc-ceE-EEEEEeCCCCCCCCCceEEEEeCCe
Q 022652 218 KWIGFSEPKYVG-HCA-YRGLGYYPNGQPFEPKLNYIYGRGV 257 (294)
Q Consensus 218 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (294)
.|..++ ... ..-...+.....+.+....++|.|.
T Consensus 142 ------~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~ 177 (203)
T PF13738_consen 142 ------IPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGN 177 (203)
T ss_dssp --------S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SH
T ss_pred ------ccccccccccceEehhhcCChhhcCCCcEEEEcChH
Confidence 233333 111 1111122333345566777777764
No 83
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.49 E-value=8.9e-13 Score=118.57 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=54.3
Q ss_pred eeeeHHHHHHHHHhcC--CC-CceEeCCceeEEEEcCCceEEEEec---CCC--EEEcCEEEecCCCCcH-hhhhcCCCC
Q 022652 154 RAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRSP-IAKWIGFSE 224 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~-v~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~S~-~~~~~~~~~ 224 (294)
..++...+.+.|.+.+ .+ ++++++++|++++.++++.|.+.+. +|+ ++.|++||+|+|.||. +++.+|+..
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~ 257 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE 257 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 3578889999998776 24 7999999999999866653545543 353 6899999999999985 666777764
No 84
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.48 E-value=1e-11 Score=104.80 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=105.8
Q ss_pred ccCCCCcEEEECCCHHHHHHHHHHHHc------CCceEEEecCCCCCCc-CceEEEcccHHHHHHHcCCchhHHhc----
Q 022652 54 ADVRKEDIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSLRTG-GTSLTLFKNGWSVLDALGVGSDLRSQ---- 122 (294)
Q Consensus 54 ~~~~~~dvvIIGaG~aGl~~A~~L~~~------G~~V~vlE~~~~~~~~-g~~~~~~~~~~~~l~~lg~~~~~~~~---- 122 (294)
.....+||+|||||||||++|+.|.+. .++|.|+||...++.. -.+..+.+.+++.| ..++.+.
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL-----~P~wke~~apl 146 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL-----LPDWKEDGAPL 146 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh-----CcchhhcCCcc
Confidence 345679999999999999999999864 5799999999988532 11223444433322 1111111
Q ss_pred cccc--cceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCc-eEEEEecC
Q 022652 123 FLEI--KGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNG-VTILELVN 197 (294)
Q Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~-~~~v~~~~ 197 (294)
..++ +.+.+....+ ...++..........+.+.-.++.++|-+.+ -|++|+-+..+.++..++++ +.+|.+.|
T Consensus 147 ~t~vT~d~~~fLt~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D 224 (621)
T KOG2415|consen 147 NTPVTSDKFKFLTGKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATND 224 (621)
T ss_pred cccccccceeeeccCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecc
Confidence 1122 2333333322 2223322222344467789999999998887 48999999999999888765 45666644
Q ss_pred ---------------CCEEEcCEEEecCCCCcHhhhhc
Q 022652 198 ---------------GTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 198 ---------------g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
|..+.|+..|.|.|.+..+.+++
T Consensus 225 ~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 225 VGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred ccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 34689999999999998877766
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.48 E-value=2.6e-12 Score=114.28 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=53.7
Q ss_pred eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH-hhhhcCCCCCc
Q 022652 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPK 226 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~-~~~~~~~~~~~ 226 (294)
.++...+.+.|.+.+ .|++++++++|++++.++++++.|.+.++ ++.+|.||+|+|.++. +...++...|.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi 270 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPV 270 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCccc
Confidence 356678888887666 58999999999999887776555777655 6999999999999985 34444555443
No 86
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.47 E-value=3.8e-12 Score=117.84 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=51.7
Q ss_pred eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcC--CceEEEEe---cCCC--EEEcCEEEecCCCCcH-hhhhcC
Q 022652 155 AVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILEL---VNGT--RIYANIVIGCDGIRSP-IAKWIG 221 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~--~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~-~~~~~~ 221 (294)
+++...+...|++.+ .|++++.+++|+++..++ ++++.|.. .+++ ++.+|.||+|+|+||. ++++++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 468889998888877 589999999999998763 44555554 2343 5899999999999986 666664
No 87
>PLN02661 Putative thiazole synthesis
Probab=99.47 E-value=1.7e-12 Score=109.87 Aligned_cols=131 Identities=27% Similarity=0.315 Sum_probs=84.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCCCCcCc--eE-----EEcccHHHHHHHcCCchhHHhcccccc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGT--SL-----TLFKNGWSVLDALGVGSDLRSQFLEIK 127 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~-G~~V~vlE~~~~~~~~g~--~~-----~~~~~~~~~l~~lg~~~~~~~~~~~~~ 127 (294)
..++||+|||||++|+++|++|++. |++|+|+|+...++.+.. +. .+.....++|+++|+.-+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~-------- 161 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE-------- 161 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc--------
Confidence 4468999999999999999999986 899999999886632111 00 1111234555666552100
Q ss_pred ceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEe------cC-
Q 022652 128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL------VN- 197 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~------~~- 197 (294)
.++ .....+...+.+.|.+.+ ++++++.++.++++..+++.+.+|.+ .+
T Consensus 162 ------~dg---------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~ 220 (357)
T PLN02661 162 ------QEN---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH 220 (357)
T ss_pred ------CCC---------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence 000 000113334455555543 48999999999999987776555553 11
Q ss_pred -C------CEEEcCEEEecCCCCcH
Q 022652 198 -G------TRIYANIVIGCDGIRSP 215 (294)
Q Consensus 198 -g------~~~~ad~vV~A~G~~S~ 215 (294)
+ ..+.|+.||+|+|..+.
T Consensus 221 ~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 221 DTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred CCCCccceeEEECCEEEEcCCCCCc
Confidence 1 25899999999997764
No 88
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.46 E-value=1.7e-12 Score=116.64 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=55.2
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEe---cCC--CEEEcCEEEecCCCCcH-hhhhcCCCC
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNG--TRIYANIVIGCDGIRSP-IAKWIGFSE 224 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~---~~g--~~~~ad~vV~A~G~~S~-~~~~~~~~~ 224 (294)
..++...+.+.|.+.+ .|++++++++|++++.++++.|.+.+ .+| .+++||.||+|+|.+|. +++.+|+..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~ 251 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE 251 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence 4688999999998877 48999999999999986654344543 234 26899999999999985 677777764
No 89
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.46 E-value=1.5e-12 Score=119.16 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=55.7
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEec---CC--CEEEcCEEEecCCCCcH-hhhhcCCCCC
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGIRSP-IAKWIGFSEP 225 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~~S~-~~~~~~~~~~ 225 (294)
..++...|...+++.+ .|++++++++|+++..+++++++|++. ++ .++.||.||+|+|.|+. +.++.+...+
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~ 223 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIR 223 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCc
Confidence 3578888888887765 589999999999999877766666653 23 36899999999999995 5555565544
Q ss_pred c
Q 022652 226 K 226 (294)
Q Consensus 226 ~ 226 (294)
.
T Consensus 224 i 224 (546)
T PRK11101 224 M 224 (546)
T ss_pred e
Confidence 3
No 90
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-12 Score=109.35 Aligned_cols=184 Identities=21% Similarity=0.212 Sum_probs=105.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
..+||+|||||||||+||++++++|++ ++|+|+.. ++ |+... +.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~g--g~~~~--------------~~------------------ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PG--GQLTK--------------TT------------------ 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cC--Ccccc--------------ce------------------
Confidence 478999999999999999999999999 66666554 31 11000 00
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.. ...+.....+.-.+|.+.+.+.+ .++++.. ..|.++...++ .+.|.+.+++ ++|+.||+|+|..
T Consensus 47 --~v-------enypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 47 --DV-------ENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred --ee-------cCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCc
Confidence 00 00011111255567777777776 4777766 67777776655 5678999887 9999999999987
Q ss_pred cHhhhhcCCCCCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEE--EEEcCCCeEEEEEEEcCCCCCCCchHHHHHH
Q 022652 214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAG--YVPVSPTKVYWFICHNNPTPECPTQAQKLLI 291 (294)
Q Consensus 214 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (294)
....+..+ ...+.|.... ++..... .+.+.-..+.|.|..+. .+-+.+--..+.+.+..+....+...++.+.
T Consensus 115 ~~~~~~~~--e~e~~g~gv~--yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~ 189 (305)
T COG0492 115 ARKLGVPG--EEEFEGKGVS--YCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLK 189 (305)
T ss_pred ccCCCCCc--chhhcCCceE--EeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHH
Confidence 66322211 1123332111 2333333 34566666777664331 1111111112455556655554444444444
Q ss_pred h
Q 022652 292 R 292 (294)
Q Consensus 292 ~ 292 (294)
+
T Consensus 190 ~ 190 (305)
T COG0492 190 K 190 (305)
T ss_pred h
Confidence 3
No 91
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=2.2e-12 Score=113.43 Aligned_cols=172 Identities=23% Similarity=0.324 Sum_probs=105.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHH----HHHHHcCC--chhHHhccccccceE
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW----SVLDALGV--GSDLRSQFLEIKGMA 130 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~----~~l~~lg~--~~~~~~~~~~~~~~~ 130 (294)
...+|+|||||++||++|.+|.+.|++|+++||.+.++ ..+...+... .+.+++-+ ..+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~ss~Y~~l~tn~pKe~~---------- 71 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHSSVYKSLRTNLPKEMM---------- 71 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCcccccccchhhhhhccCChhhh----------
Confidence 46799999999999999999999999999999999873 2222222211 11222111 00000
Q ss_pred EEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCC----CCceEeCCceeEEEEcCCceEEEEecCC----CEEE
Q 022652 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP----PESVQFSSELAKIETSGNGVTILELVNG----TRIY 202 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~v~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~ 202 (294)
....+++... .......+.++.+.|.+.+. ...|+++++|..+....++.|.|.+.++ +...
T Consensus 72 -------~~~dfpf~~~---~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~i 141 (448)
T KOG1399|consen 72 -------GYSDFPFPER---DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEI 141 (448)
T ss_pred -------cCCCCCCccc---CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEE
Confidence 0111222211 22233556677777766663 3478999999999887744588888654 3678
Q ss_pred cCEEEecCCCCcHhhhhcCCCCCcccc--ceEEEEEE----eCCCCCCCCCceEEEEeCCe
Q 022652 203 ANIVIGCDGIRSPIAKWIGFSEPKYVG--HCAYRGLG----YYPNGQPFEPKLNYIYGRGV 257 (294)
Q Consensus 203 ad~vV~A~G~~S~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 257 (294)
+|.||+|+|.+... ..|..++ ...|.|.. .+.....|.+...++.|.|.
T Consensus 142 fd~VvVctGh~~~P------~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 142 FDAVVVCTGHYVEP------RIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred eeEEEEcccCcCCC------CCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 89999999999411 1222222 23333333 33345567777788887664
No 92
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.44 E-value=8.3e-14 Score=123.77 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=35.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc---eEEEcc-cHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT---SLTLFK-NGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~---~~~~~~-~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
||||||||++|++||+.+++.|.+|+|+|+.+.++.... ...+.. .... ...-|+..++................
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~~~ 79 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQEDRY 79 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccccccc
Confidence 899999999999999999999999999999998753211 122222 1111 11112233333222111111000000
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecC---CCEEEcCEEEecC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---GTRIYANIVIGCD 210 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~---g~~~~ad~vV~A~ 210 (294)
+ ......+++..+...|.+.+ .|+++++++.|+++..+++.++.|.+.+ ..++.||.+|+|+
T Consensus 80 ~-------------~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT 146 (428)
T PF12831_consen 80 G-------------WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00001233333333333333 4899999999999999887766777754 3579999999999
Q ss_pred CCCcHhhhhcCCC
Q 022652 211 GIRSPIAKWIGFS 223 (294)
Q Consensus 211 G~~S~~~~~~~~~ 223 (294)
|- +.+....|.+
T Consensus 147 G~-g~l~~~aG~~ 158 (428)
T PF12831_consen 147 GD-GDLAALAGAP 158 (428)
T ss_dssp -------------
T ss_pred cc-cccccccccc
Confidence 94 4554444433
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.44 E-value=9.2e-12 Score=111.42 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=54.4
Q ss_pred eeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEE---ecCCC--EEEcCEEEecCCCCcH-hhhhcCCCC
Q 022652 154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILE---LVNGT--RIYANIVIGCDGIRSP-IAKWIGFSE 224 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~S~-~~~~~~~~~ 224 (294)
..++...+.+.|.+.+ .|++++++++|++++.++++.|.+. +.+++ +++||+||+|+|+||. +.+.+|...
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~ 258 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE 258 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 4578888888887766 3799999999999988744436565 34442 6899999999999995 666777653
No 94
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.43 E-value=5.1e-12 Score=103.87 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=101.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccH-------------HHHHHHcCCchhHHhc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG-------------WSVLDALGVGSDLRSQ 122 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~-------------~~~l~~lg~~~~~~~~ 122 (294)
....||+|||||+-|+++|++|+|+|.+++++|+.+.+...|.+...+.-. .+.++.|--.+.....
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 356899999999999999999999999999999999876555554332111 1122222111111100
Q ss_pred cccccceEEEcCCC------------------------cEE-E----EecCCCC---CCCcceeeeeHHHHHHHHHhcC-
Q 022652 123 FLEIKGMAVKSEDG------------------------REL-R----SFGFKDE---DASQEVRAVERRILLETLANQL- 169 (294)
Q Consensus 123 ~~~~~~~~~~~~~~------------------------~~~-~----~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~- 169 (294)
........+...+. +.+ . .+++... ........+...+-++.|...+
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 00000000000000 000 0 0111111 0122234577777777777776
Q ss_pred -CCCceEeCCceeEEEEcC--CceEEEEecCCCEEEcCEEEecCCCCcH--hhhhcCCCCCc
Q 022652 170 -PPESVQFSSELAKIETSG--NGVTILELVNGTRIYANIVIGCDGIRSP--IAKWIGFSEPK 226 (294)
Q Consensus 170 -~~v~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~~ad~vV~A~G~~S~--~~~~~~~~~~~ 226 (294)
-|+.++.+.+|+.++..+ +..+.|.+.+|..+.++.+|.+.|+|-. ++..+++..|.
T Consensus 165 ~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv 226 (399)
T KOG2820|consen 165 ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPV 226 (399)
T ss_pred HcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCcc
Confidence 388999999999887542 3345689999988999999999999864 44444554443
No 95
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.41 E-value=1.7e-12 Score=116.45 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=54.5
Q ss_pred eeeeHHHHHHHHHhcC-C-----C--CceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH-hhhhcCC
Q 022652 154 RAVERRILLETLANQL-P-----P--ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGF 222 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~-~-----~--v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~-~~~~~~~ 222 (294)
..++...+.+.|.+.+ . | ++++++++|++++.++++.+.|.+.+| ++.||.||+|+|.||. +.+.+|+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence 3578888888887665 2 4 678999999999987666677888877 5999999999999995 6666665
No 96
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.41 E-value=1.8e-12 Score=116.49 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=48.7
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
..+++..+.+.|++.+ .|++|+.+++|++++. ++. +.|++.+| ++.||.||+|+|+|+.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEccccccc
Confidence 4678999999998776 4899999999999975 333 55788777 5999999999999975
No 97
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.41 E-value=1.9e-11 Score=106.87 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=45.4
Q ss_pred eeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
..++...+...|.+.+ .|++++.+++|++++.. .|.+.+|+ +.||.||+|+|.++.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEeCCCc-EEeCEEEECCCCChh
Confidence 3578888888888765 38999999999999642 37777775 789999999999975
No 98
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.41 E-value=1.3e-11 Score=109.43 Aligned_cols=211 Identities=17% Similarity=0.205 Sum_probs=121.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-CcCceEEEcccHHHHHHHcCCc---hhHHhc---------c
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVG---SDLRSQ---------F 123 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-~~g~~~~~~~~~~~~l~~lg~~---~~~~~~---------~ 123 (294)
..+||+|||||+.|+-+|..++.+|++|+|+|+++... ..+++..+-..+.+.++...+. +.+.+. .
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 68999999999999999999999999999999998653 4556666666666666554322 111111 0
Q ss_pred ccccceEEEc-C------------------CCc-----EEEEecC------CCC--------CCCcceeeeeHHHHHHHH
Q 022652 124 LEIKGMAVKS-E------------------DGR-----ELRSFGF------KDE--------DASQEVRAVERRILLETL 165 (294)
Q Consensus 124 ~~~~~~~~~~-~------------------~~~-----~~~~~~~------~~~--------~~~~~~~~~~~~~l~~~L 165 (294)
.......+.. + .+. ....+.. .+. ...+.-..++...|.-..
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 0000000000 0 000 0000000 000 001122345556665555
Q ss_pred HhcC--CCCceEeCCceeEEEEcCCceEEEEecCCC-----EEEcCEEEecCCCCcH-hhhhcCCCCCccccceEEEEEE
Q 022652 166 ANQL--PPESVQFSSELAKIETSGNGVTILELVNGT-----RIYANIVIGCDGIRSP-IAKWIGFSEPKYVGHCAYRGLG 237 (294)
Q Consensus 166 ~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~-----~~~ad~vV~A~G~~S~-~~~~~~~~~~~~~~~~~~~~~~ 237 (294)
+..+ .|.+++..++|+++..+++ +++|+..|.+ .++|+.||+|+|.|+. +++..+.............|+.
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH 249 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH 249 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence 5444 5889999999999999887 7888887643 5899999999999996 5666644422111111111211
Q ss_pred e-CCCCCCCCCceEEEEe-CCeEEEEEEcCCCe
Q 022652 238 Y-YPNGQPFEPKLNYIYG-RGVRAGYVPVSPTK 268 (294)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~ 268 (294)
- .+...+....+...+. ++....++|..+..
T Consensus 250 lVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 250 LVVDKKFPINQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred EEecccCCCCceEEeecCCCCceEEEecCCCCE
Confidence 1 1111222333444444 66677788876653
No 99
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.39 E-value=6e-12 Score=113.52 Aligned_cols=158 Identities=17% Similarity=0.255 Sum_probs=86.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc-----eEE-Eccc----------HHHHHHHc----C-C
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-----SLT-LFKN----------GWSVLDAL----G-V 115 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~-----~~~-~~~~----------~~~~l~~l----g-~ 115 (294)
..+||||||+|++|+++|+.|+++|.+|+||||.+....+|. ++. .... ..++++.+ + .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 468999999999999999999999999999999874211111 111 1100 01122211 1 0
Q ss_pred -chhHHhcc----------ccccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeE
Q 022652 116 -GSDLRSQF----------LEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAK 182 (294)
Q Consensus 116 -~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~ 182 (294)
..++.... ....++.+....... ... ........-....+.+.|.+.+ .+++++++++|++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~---~~~---~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~ 156 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGA---LHV---ARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTA 156 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCc---ccc---CCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 11111000 000111211100000 000 0000000011345666666555 4899999999999
Q ss_pred EEEcCCceEEEEec--CC--CEEEcCEEEecCCCCcHhhhhc
Q 022652 183 IETSGNGVTILELV--NG--TRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 183 i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
+..+++.++.|... ++ ..+.++.||+|+|.++..+.++
T Consensus 157 l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 157 LELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred EEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 98876666666653 33 3689999999999887644333
No 100
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.38 E-value=5.8e-12 Score=107.00 Aligned_cols=111 Identities=24% Similarity=0.367 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
+||+|||||++|+++|..|+++|++|+|+|+.+ + +|.-.. .. .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~--gg~~~~-~~-------------~-------------------- 43 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P--GGQLTT-TT-------------E-------------------- 43 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C--Ccceee-cc-------------c--------------------
Confidence 689999999999999999999999999999886 2 221100 00 0
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
...+ +.....+...++...+.+.+ .++++++ ++|+++..+++. +.|.+.++.++.+|.||+|+|....
T Consensus 44 ~~~~-------~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 44 VENY-------PGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred cccc-------CCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCCcc
Confidence 0000 00000122234444444433 3788888 899999887655 5578888888999999999998653
No 101
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.37 E-value=4.5e-11 Score=105.31 Aligned_cols=120 Identities=17% Similarity=0.060 Sum_probs=71.5
Q ss_pred eeeHHHHHHHHHhcC--CC-CceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh-hhhcC-CCCCcccc
Q 022652 155 AVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIG-FSEPKYVG 229 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~--~~-v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~-~~~~~-~~~~~~~~ 229 (294)
.++...+.+.|.+.+ .| ..+..++.+..+..+. +.+.|.+.+|+ +.+|.||+|+|.++.. ....+ +..+-.+.
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~ 229 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPV 229 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCCCcCccccc
Confidence 477788888888776 35 4667799999998764 56778998887 9999999999999864 33334 33222221
Q ss_pred ceEEEEEEeCCCCCCCCCce-EEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022652 230 HCAYRGLGYYPNGQPFEPKL-NYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (294)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (294)
.... ............... ..........++.|..++.+.+......
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~ 277 (387)
T COG0665 230 RGQA-LTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEE 277 (387)
T ss_pred cceE-EEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccc
Confidence 1111 112221111111111 2333334445578877777777655433
No 102
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.37 E-value=9.7e-12 Score=112.89 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=87.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC--ceEEEcccHHHHHHHcCCch----------------
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG--TSLTLFKNGWSVLDALGVGS---------------- 117 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g--~~~~~~~~~~~~l~~lg~~~---------------- 117 (294)
..++||||||+|.+|+++|+.+++.|.+|+||||.+..+... .+-.+.....+..+..++.+
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 357899999999999999999999999999999988653210 00011111111112222211
Q ss_pred ---hHHhcccc--ccceEEEcCCCcEEEEecCCCCC-C----CcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEE
Q 022652 118 ---DLRSQFLE--IKGMAVKSEDGRELRSFGFKDED-A----SQEVRAVERRILLETLANQL--PPESVQFSSELAKIET 185 (294)
Q Consensus 118 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~ 185 (294)
++...... ...+.+....|-.+......... . ...........+.+.|.+.+ .+++++++++|+++..
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 218 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence 11110000 00000001111111100000000 0 00000011234556665554 4899999999999987
Q ss_pred cCCceEEEEe--cCCC--EEEcCEEEecCCCCcHhhhhc
Q 022652 186 SGNGVTILEL--VNGT--RIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 186 ~~~~~~~v~~--~~g~--~~~ad~vV~A~G~~S~~~~~~ 220 (294)
+++.+++|.. .+++ .+.+|.||+|+|.++....++
T Consensus 219 ~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 219 KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 6655544544 3432 689999999999988754444
No 103
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.37 E-value=1.2e-12 Score=118.56 Aligned_cols=174 Identities=19% Similarity=0.273 Sum_probs=93.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHh-ccccccceEEEcCCC-
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKSEDG- 136 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~-~~~~~~~~~~~~~~~- 136 (294)
.+|+|||||++||++|..|.+.|++++++||.+.+++.-. ... .... ...-+..+....+..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~---~~~-------------~~~~g~~~~y~sl~~n~sk~~ 65 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR---YTE-------------NPEDGRSSVYDSLHTNTSKEM 65 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC---HST-------------TCCCSEGGGSTT-B-SS-GGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe---eCC-------------cCCCCccccccceEEeeCchH
Confidence 4799999999999999999999999999999998742110 000 0000 000001111100000
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCC--C--CceEeCCceeEEEEcCC----ceEEEEecCCC---EEEcCE
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLP--P--ESVQFSSELAKIETSGN----GVTILELVNGT---RIYANI 205 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--v~i~~~~~v~~i~~~~~----~~~~v~~~~g~---~~~ad~ 205 (294)
.....++++.. .+ ....+.++.++|.+.+. + -.|++|++|+++++.++ +.|.|.+.++. +..+|.
T Consensus 66 ~~fsdfp~p~~-~p---~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~ 141 (531)
T PF00743_consen 66 MAFSDFPFPED-YP---DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDA 141 (531)
T ss_dssp SCCTTS-HCCC-CS---SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECE
T ss_pred hcCCCcCCCCC-CC---CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCe
Confidence 00001111111 11 13567777777766552 3 47899999999998654 45888876542 456899
Q ss_pred EEecCCCCcHhhhhcCCCCCccccceEEEEEEeC----CCCCCCCCceEEEEeCC
Q 022652 206 VIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYY----PNGQPFEPKLNYIYGRG 256 (294)
Q Consensus 206 vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 256 (294)
||+|+|.++... ++.+.++|...|.|...+ .....+.+...++.|.|
T Consensus 142 VvvatG~~~~P~----~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 142 VVVATGHFSKPN----IPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGG 192 (531)
T ss_dssp EEEEE-SSSCES----B-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSS
T ss_pred EEEcCCCcCCCC----CChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCC
Confidence 999999988632 111124444444444333 33445566666666544
No 104
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.35 E-value=9.5e-12 Score=110.50 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=69.9
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhhhh-cCCCCCccccc
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKW-IGFSEPKYVGH 230 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~-~~~~~~~~~~~ 230 (294)
..+++..++++|+..+ .|+.|..++.|++|....++.+.|++..|. +++..||+|+|.|...-.. .+.+.|-++-.
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~ 260 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPMH 260 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceeee
Confidence 3588999999998877 489999999999999887777789999985 9999999999999864444 48777877777
Q ss_pred eEEEEEEeCCC
Q 022652 231 CAYRGLGYYPN 241 (294)
Q Consensus 231 ~~~~~~~~~~~ 241 (294)
++|.-....+.
T Consensus 261 H~YvvT~~IeG 271 (856)
T KOG2844|consen 261 HAYVVTSRIEG 271 (856)
T ss_pred eeEEEecccCC
Confidence 77664444443
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.33 E-value=7e-11 Score=107.73 Aligned_cols=113 Identities=28% Similarity=0.381 Sum_probs=79.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
...+||+|||||++|+++|.+|++.|++|+|+|+. + +|.... ..++. .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~--GG~~~~----------~~~~~----------------~-- 256 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F--GGQVLD----------TMGIE----------------N-- 256 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCeeec----------cCccc----------------c--
Confidence 45799999999999999999999999999999764 2 232100 00000 0
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
+. . .......++.+.|.+.+ .+++++++++|+++...++. +.|.+.+|..+.+|.||+|+|..
T Consensus 257 ------~~------~--~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 257 ------FI------S--VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred ------cC------C--CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEECCCCEEEcCEEEECCCCC
Confidence 00 0 00123445556655544 37899999999999887654 56888888889999999999996
Q ss_pred cH
Q 022652 214 SP 215 (294)
Q Consensus 214 S~ 215 (294)
..
T Consensus 322 ~r 323 (517)
T PRK15317 322 WR 323 (517)
T ss_pred cC
Confidence 53
No 106
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.33 E-value=1.8e-11 Score=110.70 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=86.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-CcCceEEE---ccc-HHHHHHHcCC-chhHHhccccccceEEE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTL---FKN-GWSVLDALGV-GSDLRSQFLEIKGMAVK 132 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-~~g~~~~~---~~~-~~~~l~~lg~-~~~~~~~~~~~~~~~~~ 132 (294)
|||+|||||++|+.+|..+++.|.+|+|+|+..... ..++.-.+ ... ..+.++.+|- ...+. +...+.+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~----d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAA----DKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHH----Hhhceehe
Confidence 699999999999999999999999999999975321 11110000 000 1122233321 11111 11111111
Q ss_pred cCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEc-CCceEEEEecCCCEEEcCEEEe
Q 022652 133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETS-GNGVTILELVNGTRIYANIVIG 208 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~ad~vV~ 208 (294)
..+. ...+ .......++++..+.+.|.+.+ +++.++. ..|+++..+ ++.+.+|.+.+|..+.||.||+
T Consensus 77 ~ln~------skgp-AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VIL 148 (617)
T TIGR00136 77 VLNS------SKGP-AVRATRAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVII 148 (617)
T ss_pred eccc------CCCC-cccccHHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEE
Confidence 0000 0000 0011124678888888886655 4677764 477787665 5566788999998899999999
Q ss_pred cCCCCcH
Q 022652 209 CDGIRSP 215 (294)
Q Consensus 209 A~G~~S~ 215 (294)
|+|.+..
T Consensus 149 ATGtfL~ 155 (617)
T TIGR00136 149 TTGTFLR 155 (617)
T ss_pred ccCcccC
Confidence 9999964
No 107
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.32 E-value=1.5e-11 Score=109.43 Aligned_cols=155 Identities=26% Similarity=0.336 Sum_probs=82.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC----cCceEEEcc----------c-HHH----HHHHcC-C-chh
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT----GGTSLTLFK----------N-GWS----VLDALG-V-GSD 118 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~----~g~~~~~~~----------~-~~~----~l~~lg-~-~~~ 118 (294)
||+|||+|++|+++|+.++++|.+|+|+||.+..+. .+..+.... . ... +++... . ..+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 899999999999999999999999999999987432 112222222 1 111 112211 1 111
Q ss_pred HHhcc----------ccccceEEEc-CCCcEEEEecCCCCCCC----------cceeeeeHHHHHHHHHhcC--CCCceE
Q 022652 119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDAS----------QEVRAVERRILLETLANQL--PPESVQ 175 (294)
Q Consensus 119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~L~~~~--~~v~i~ 175 (294)
+.... ....++.+.. ..+.... ......... .......-..+.+.|.+.+ .+++|+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAP-TPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCE-EEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccc-cccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeee
Confidence 11110 0111222222 1111000 000000000 0011124456677777666 479999
Q ss_pred eCCceeEEEEcCCceEEEEec---CCC--EEEcCEEEecCCCCcH
Q 022652 176 FSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRSP 215 (294)
Q Consensus 176 ~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~S~ 215 (294)
++++++++..+++.+++|... +|+ ++.|+.||+|+|.++.
T Consensus 160 ~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 160 FNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp ESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred ccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 999999999988877777766 343 6889999999999995
No 108
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.32 E-value=2.6e-11 Score=106.97 Aligned_cols=155 Identities=25% Similarity=0.298 Sum_probs=87.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC-----cCceEEEccc--HHHHHHHcCCchh-HHh---ccccccceE
Q 022652 62 VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFKN--GWSVLDALGVGSD-LRS---QFLEIKGMA 130 (294)
Q Consensus 62 vIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~-----~g~~~~~~~~--~~~~l~~lg~~~~-~~~---~~~~~~~~~ 130 (294)
+|||||++|+++|+.|+++|++|+|+||.+.++. ++..+.+... ..++.+..+-... +.. .+.....+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999886542 1111222111 1122222211111 000 000000001
Q ss_pred EEcCCCcEEEEecCCCCCCCcce-eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEE
Q 022652 131 VKSEDGRELRSFGFKDEDASQEV-RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (294)
+....|........ ...+ .......+.+.|.+.+ .+++++++++|+++..+++. +.+++ +++++.+|.||
T Consensus 81 ~~~~~Gv~~~~~~~-----g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VI 153 (400)
T TIGR00275 81 FFESLGLELKVEED-----GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVI 153 (400)
T ss_pred HHHHcCCeeEEecC-----CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEE
Confidence 11111111111000 0000 0113456666666655 48999999999999876554 55766 45579999999
Q ss_pred ecCCCCc-----------HhhhhcCCC
Q 022652 208 GCDGIRS-----------PIAKWIGFS 223 (294)
Q Consensus 208 ~A~G~~S-----------~~~~~~~~~ 223 (294)
+|+|.+| .+.+.+|..
T Consensus 154 lAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 154 LATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred ECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 9999977 466666665
No 109
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=99.03 Aligned_cols=136 Identities=24% Similarity=0.219 Sum_probs=81.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc--------------eEEEcccHHHHHHH------cCCchh
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT--------------SLTLFKNGWSVLDA------LGVGSD 118 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~--------------~~~~~~~~~~~l~~------lg~~~~ 118 (294)
.+|+|||+|++|++||+.|+..|++|+|+||+...+ |+ +..+.+....+++. -|+-+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvG--GRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVG--GRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDV 79 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcc--cchheeccCCccccccceeecCCchHHHHHHHHHHhCCceee
Confidence 369999999999999999999999999999998652 22 12223332222222 122111
Q ss_pred HHhccccccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC
Q 022652 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG 198 (294)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g 198 (294)
... .++...+.. ........+ ....-....|.+.|+.. .+|.++++|+++...++. |.+.+++|
T Consensus 80 W~~--------~~~~~~~~~---~~~~~d~~p-yvg~pgmsalak~LAtd---L~V~~~~rVt~v~~~~~~-W~l~~~~g 143 (331)
T COG3380 80 WTP--------AVWTFTGDG---SPPRGDEDP-YVGEPGMSALAKFLATD---LTVVLETRVTEVARTDND-WTLHTDDG 143 (331)
T ss_pred ccc--------cccccccCC---CCCCCCCCc-cccCcchHHHHHHHhcc---chhhhhhhhhhheecCCe-eEEEecCC
Confidence 100 001100000 000011111 22223455666766664 489999999999988555 88999766
Q ss_pred -CEEEcCEEEecCCC
Q 022652 199 -TRIYANIVIGCDGI 212 (294)
Q Consensus 199 -~~~~ad~vV~A~G~ 212 (294)
+...+|.||+|.=+
T Consensus 144 ~~~~~~d~vvla~PA 158 (331)
T COG3380 144 TRHTQFDDVVLAIPA 158 (331)
T ss_pred CcccccceEEEecCC
Confidence 45788999988543
No 110
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=4e-11 Score=111.35 Aligned_cols=37 Identities=41% Similarity=0.597 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+||+|||||.|||+||+.+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4689999999999999999999999999999986644
No 111
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.28 E-value=6.4e-11 Score=106.09 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcC--CCCceEeCCceeEEEEcCC-ceEEEEe--cCCC--EEEcCEEEecCCCCcHhhhhc
Q 022652 158 RRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILEL--VNGT--RIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 158 ~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~-~~~~v~~--~~g~--~~~ad~vV~A~G~~S~~~~~~ 220 (294)
...+.+.|.+.+ .+++++++++|+++..+++ .+++|.. .+++ .+.+|.||+|+|.++....++
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence 345677776665 4899999999999998654 4444444 3443 478999999999998744333
No 112
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.27 E-value=8.4e-11 Score=105.80 Aligned_cols=150 Identities=14% Similarity=0.182 Sum_probs=81.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC-----cCceEEEc-ccH-HHHHHH-c----CC-chhHHhc---
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLF-KNG-WSVLDA-L----GV-GSDLRSQ--- 122 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~-----~g~~~~~~-~~~-~~~l~~-l----g~-~~~~~~~--- 122 (294)
+||+|||||+||+++|+.+++.|.+|+|+||...... +|....+. ... ...+.+ + ++ ..++...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999853211 11111111 111 111111 0 11 0111100
Q ss_pred -------cccccceEEEcCCCcEEEEecCCCCCCCccee--eeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceE
Q 022652 123 -------FLEIKGMAVKSEDGRELRSFGFKDEDASQEVR--AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVT 191 (294)
Q Consensus 123 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~ 191 (294)
+....++.+.... . ......+.... ...-..+.+.|.+.+ .+++++.+ .++++..+++.++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~------~-~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~ 153 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNE------L-EGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAY 153 (466)
T ss_pred HHHHHHHHHHHcCCCcccCC------C-cCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEE
Confidence 0000111111000 0 00000000000 012345666776655 47888775 7888876655555
Q ss_pred EEEecCCCEEEcCEEEecCCCCcHhh
Q 022652 192 ILELVNGTRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 192 ~v~~~~g~~~~ad~vV~A~G~~S~~~ 217 (294)
++.. ++..+.++.||+|+|.++.+.
T Consensus 154 Gv~~-~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 154 GVFL-DGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEE-CCEEEEeCeEEECCCcCcCCC
Confidence 5665 455799999999999999864
No 113
>PRK07121 hypothetical protein; Validated
Probab=99.27 E-value=1.4e-10 Score=105.22 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcC--CCCceEeCCceeEEEEcCC-ceEEEEecC-CC--EEEc-CEEEecCCCCcHhhhhc
Q 022652 158 RRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELVN-GT--RIYA-NIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 158 ~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~-~~~~v~~~~-g~--~~~a-d~vV~A~G~~S~~~~~~ 220 (294)
-..+.+.|.+.+ .+++++++++|+++..+++ .+++|...+ ++ .+.+ +.||+|+|.++..+.++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 345677776655 4899999999999987654 555665543 32 5788 99999999998644333
No 114
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.27 E-value=5.5e-11 Score=109.98 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=84.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCcCc-----eEE--Ecc--cHHHHHHHc-----CCch-hH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGT-----SLT--LFK--NGWSVLDAL-----GVGS-DL 119 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~g~-----~~~--~~~--~~~~~l~~l-----g~~~-~~ 119 (294)
..+||+|||||.||++||+.+++. |.+|+|+||....+.+.. ++. +.. .....++.+ ++.+ ++
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 468999999999999999999998 999999999875432210 111 101 111111111 1111 01
Q ss_pred Hhc----------cccccceEEEc-CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEE
Q 022652 120 RSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIET 185 (294)
Q Consensus 120 ~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~ 185 (294)
... .....++.+.. .++.... . ...........+.+.|.+.+ .++++++++.|+++..
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-----~---g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~ 161 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVR-----R---GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV 161 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccc-----c---CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE
Confidence 000 01112233322 1121100 0 00000123445666665554 2499999999999987
Q ss_pred cCCceEEEE---ecCCC--EEEcCEEEecCCCCcH
Q 022652 186 SGNGVTILE---LVNGT--RIYANIVIGCDGIRSP 215 (294)
Q Consensus 186 ~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~S~ 215 (294)
+++.+++|. ..+++ .+.|+.||+|+|.++.
T Consensus 162 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 162 DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred eCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 666555543 33453 6899999999999875
No 115
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.26 E-value=1.1e-10 Score=107.69 Aligned_cols=157 Identities=26% Similarity=0.252 Sum_probs=84.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEc---c-cHHHH-HHH-----cCCch-hHHhc
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---K-NGWSV-LDA-----LGVGS-DLRSQ 122 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~---~-~~~~~-l~~-----lg~~~-~~~~~ 122 (294)
||+|||||+||+++|+.+++.|.+|+|+||....+. +|....+. + ...+. +.. -++.+ ++...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 799999999999999999999999999999875321 11111111 1 11111 111 11111 11100
Q ss_pred ----------cccccceEEEc-CCCcEEEEecCCCCCCCcceee--eeHHHHHHHHHhcC--CCCceEeCCceeEEEEcC
Q 022652 123 ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL--PPESVQFSSELAKIETSG 187 (294)
Q Consensus 123 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~ 187 (294)
+....++.+.. .++.... ..+.........+. ..-..+...|.+.+ .|+++++++.++++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~ 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQ-RPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEee-ccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC
Confidence 00111222221 1221110 01100000000000 11234555555544 389999999999998776
Q ss_pred CceEEEEe---cCCC--EEEcCEEEecCCCCcHhh
Q 022652 188 NGVTILEL---VNGT--RIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 188 ~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~~ 217 (294)
+.+.+|.. .+|+ .+.|+.||+|+|.++.+.
T Consensus 160 g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 160 GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 65555443 3554 589999999999998653
No 116
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.26 E-value=8.8e-11 Score=106.97 Aligned_cols=112 Identities=25% Similarity=0.361 Sum_probs=76.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
...+||+|||||+||+++|.+|++.|++|+|+|.. + +|.... ..++. . +.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~--GG~~~~----------~~~~~-----------~--~~--- 259 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--I--GGQVKD----------TVGIE-----------N--LI--- 259 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCcccc----------CcCcc-----------c--cc---
Confidence 45799999999999999999999999999999753 2 222100 00000 0 00
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.. ......++.+.+.+.+ .+++++.+++|+++..+++. +.+.+.+|..+.+|.+|+|+|..
T Consensus 260 --------------~~--~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 260 --------------SV--PYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred --------------cc--CCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCC
Confidence 00 0022334444444433 37899999999999876654 55788888889999999999986
Q ss_pred c
Q 022652 214 S 214 (294)
Q Consensus 214 S 214 (294)
.
T Consensus 323 ~ 323 (515)
T TIGR03140 323 W 323 (515)
T ss_pred c
Confidence 4
No 117
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=1.6e-10 Score=106.15 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc----eEE--Ec-----ccHHH-HHHH-c--C--Cc-hh
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT----SLT--LF-----KNGWS-VLDA-L--G--VG-SD 118 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~----~~~--~~-----~~~~~-~l~~-l--g--~~-~~ 118 (294)
..+||+|||+|.||+++|+.+++.|.+|+|+||....+.... ++. +. ....+ .++. + + +. .+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 468999999999999999999999999999999864322100 111 10 01111 1111 0 1 10 11
Q ss_pred HHhc----------cccccceEEEc-CCCcEEEEecCCCCCCCcceee--eeHHHHHHHHHhcC--CCCceEeCCceeEE
Q 022652 119 LRSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL--PPESVQFSSELAKI 183 (294)
Q Consensus 119 ~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~--~~v~i~~~~~v~~i 183 (294)
+... +....++.+.. .++..... .+.....+..... ..-..+.+.|.+.+ .++++++++.++++
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~L 162 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVR-YFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEecc-CCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEE
Confidence 1000 00011222221 11111000 0000000000000 11234566666554 48999999999999
Q ss_pred EEcCCceEEEEec---CCC--EEEcCEEEecCCCCcHh
Q 022652 184 ETSGNGVTILELV---NGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 184 ~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~S~~ 216 (294)
..+++.+++|... +++ .+.|+.||+|+|.++.+
T Consensus 163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 9876666666553 332 57899999999998854
No 118
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.24 E-value=1.2e-10 Score=103.66 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC----ceEEE--c-ccHHHHHHHc---CC---chhHHhc-
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG----TSLTL--F-KNGWSVLDAL---GV---GSDLRSQ- 122 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g----~~~~~--~-~~~~~~l~~l---g~---~~~~~~~- 122 (294)
..+||+|||+|.||++||+.++ .|.+|+|+||.+..+... .++.. . ......++.. +- ..++...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999999999985 799999999987543210 01111 0 0111111111 10 0111100
Q ss_pred ---------cccccceEEEcCCCcEEEEecCCCC-CCCccee--eeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcC
Q 022652 123 ---------FLEIKGMAVKSEDGRELRSFGFKDE-DASQEVR--AVERRILLETLANQL---PPESVQFSSELAKIETSG 187 (294)
Q Consensus 123 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~ 187 (294)
+....++.+....+.. .+..... ....... ......+.+.|.+.+ .+++|+++++++++..++
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~--~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~ 159 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKEL--SYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND 159 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCce--eeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC
Confidence 0001122222111110 0000000 0000000 012235666666544 389999999999998766
Q ss_pred CceEEEE-ecCCC--EEEcCEEEecCCCCcHh
Q 022652 188 NGVTILE-LVNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 188 ~~~~~v~-~~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+.+++|. ..++. .+.|+.||+|+|..+.+
T Consensus 160 ~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 160 NTCIGAICLKDNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred CEEEEEEEEECCcEEEEEcCeEEEccCccccc
Confidence 6555543 33443 58999999999997753
No 119
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.24 E-value=1.8e-10 Score=105.42 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC----ceEEE--cc--cHHHHHHHc-----CCc-hhHHh
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG----TSLTL--FK--NGWSVLDAL-----GVG-SDLRS 121 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g----~~~~~--~~--~~~~~l~~l-----g~~-~~~~~ 121 (294)
...+||+|||+|.||+++|+.+++.|.+|+|+||....+... .++.. .. .....+++. ++. .++..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 357899999999999999999999999999999987543110 01111 00 111111111 110 11100
Q ss_pred c----------cccccceEEEc-CCCcEEEEecCCCCCCCccee---eeeHHHHHHHHHhcC--CCCceEeCCceeEEEE
Q 022652 122 Q----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVR---AVERRILLETLANQL--PPESVQFSSELAKIET 185 (294)
Q Consensus 122 ~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~ 185 (294)
. +....++.+.. .+|....... .......... ...-..+.+.|.+.+ .++++++++.|+++..
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~-~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTRE-GGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeecc-CCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEE
Confidence 0 00111222221 1222111000 0000000000 012345666776655 3699999999999987
Q ss_pred cCC-ceEEEEec-------CC-CEEEcCEEEecCCCCcHhh
Q 022652 186 SGN-GVTILELV-------NG-TRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 186 ~~~-~~~~v~~~-------~g-~~~~ad~vV~A~G~~S~~~ 217 (294)
+++ .+.++... ++ ..+.|+.||+|+|.++.+.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 654 44455442 22 3689999999999998653
No 120
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=2.2e-10 Score=105.64 Aligned_cols=159 Identities=23% Similarity=0.225 Sum_probs=84.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCc------CceEEEcc-cH-HHHHHHc---C--C-chhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTG------GTSLTLFK-NG-WSVLDAL---G--V-GSDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~------g~~~~~~~-~~-~~~l~~l---g--~-~~~~~ 120 (294)
..+||+|||||.|||+||+.+++. |.+|+|+||....+.. |....... .. ...++.. | + ..++.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 467999999999999999999987 5899999998654311 11000100 11 1111110 1 1 01110
Q ss_pred hcc----------ccccceEEEc-CCCcEEEEecCCCCCCCcceeee--eHHHHHHHHHhcC---CCCceEeCCceeEEE
Q 022652 121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELAKIE 184 (294)
Q Consensus 121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~---~~v~i~~~~~v~~i~ 184 (294)
... ....++.+.. .+|.... ..+............ .-..+.+.|.+.+ ++++++.++.++++.
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNV-RRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceee-eccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 000 0111222221 1121100 000000000000001 1235666666554 478999999999998
Q ss_pred EcCCceEEEE---ecCCC--EEEcCEEEecCCCCcHh
Q 022652 185 TSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 185 ~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
.+++.+.+|. ..+|+ .+.|+.||+|+|.++.+
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 7766544443 34563 68999999999999976
No 121
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=3.1e-10 Score=104.78 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=86.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC---CceEEEecCCCCCC------cCceEEEcc---cHHH-----HHHH-cCCc-h
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRT------GGTSLTLFK---NGWS-----VLDA-LGVG-S 117 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G---~~V~vlE~~~~~~~------~g~~~~~~~---~~~~-----~l~~-lg~~-~ 117 (294)
.++||+|||||.|||+||+.+++.| .+|+|+||....+. +|....+.+ ...+ .++. -++. .
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 4689999999999999999999998 89999999875432 111111221 1111 1111 0111 1
Q ss_pred hHHhc----------cccccceEEEc-CCCcEEEEecCCCCCCCcceee--eeHHHHHHHHHhcC---CCCceEeCCcee
Q 022652 118 DLRSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL---PPESVQFSSELA 181 (294)
Q Consensus 118 ~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~---~~v~i~~~~~v~ 181 (294)
++... +....++.+.. .+|.... ..+.....+..... ..-..+.+.|.+.+ .++++++++.++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQ-RPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEee-eecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 11000 01112333322 2222111 11110000000000 01234556665543 478999999999
Q ss_pred EEEEcCCceEEEEe---cCCC--EEEcCEEEecCCCCcHhh
Q 022652 182 KIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 182 ~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~~ 217 (294)
++..+++.+.++.. .+++ .+.|+.||+|+|..+.+.
T Consensus 163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~ 203 (577)
T PRK06069 163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLY 203 (577)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccC
Confidence 99876655444432 3554 589999999999988653
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.4e-10 Score=106.94 Aligned_cols=159 Identities=22% Similarity=0.333 Sum_probs=84.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCC------cCceEEEc----ccHHHH-----HHH-cCCc-h
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT------GGTSLTLF----KNGWSV-----LDA-LGVG-S 117 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~------~g~~~~~~----~~~~~~-----l~~-lg~~-~ 117 (294)
..+||+|||||.||++||+.+++. |.+|+|+||....+. +|....+. ....+. ++. .++. +
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 357999999999999999999987 489999999865331 11111110 011111 110 1111 1
Q ss_pred hHHhc----------cccccceEEEc-CCCcEEEEecCCCCCCCcceeee--eHHHHHHHHHhcC--CCCceEeCCceeE
Q 022652 118 DLRSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL--PPESVQFSSELAK 182 (294)
Q Consensus 118 ~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~--~~v~i~~~~~v~~ 182 (294)
++... .....++.+.. .++.... ..+.........+.. .-..+.+.|.+.+ .+++++.++.|++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQ-RAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEee-ccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence 11100 00111222222 1221110 000000000000011 1245666666655 4799999999999
Q ss_pred EEEcCCceEEEE---ecCCC--EEEcCEEEecCCCCcHh
Q 022652 183 IETSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 183 i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+..+++.+.++. ..+++ .+.|+.||+|+|.++.+
T Consensus 161 L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 161 LILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 987655544443 34554 58999999999998864
No 123
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.22 E-value=1.4e-10 Score=105.08 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=85.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEcc-cH-HHHHH----Hc-CC-chhHHhc-
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFK-NG-WSVLD----AL-GV-GSDLRSQ- 122 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~~-~~-~~~l~----~l-g~-~~~~~~~- 122 (294)
.+||+|||+|+||+++|+.+++.|. |+|+||.+..+. ++....+.. .+ ...++ .- ++ ..++...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4699999999999999999999997 999999964321 111111111 11 11111 10 11 0111100
Q ss_pred ---------cccccceEEEc-CCCcEEEEecCCCCCCCccee--eeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcC
Q 022652 123 ---------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVR--AVERRILLETLANQL---PPESVQFSSELAKIETSG 187 (294)
Q Consensus 123 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~ 187 (294)
+....++.+.. .++....... .......... ...-..+.+.|.+.+ .++++++++.|+++..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~-gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTRE-GGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCC-CCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 00111222221 1111100000 0000000000 012346777776655 479999999999998766
Q ss_pred CceEEEEecC-C--CEEEcCEEEecCCCCcHhh
Q 022652 188 NGVTILELVN-G--TRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 188 ~~~~~v~~~~-g--~~~~ad~vV~A~G~~S~~~ 217 (294)
+.+.++...+ + ..+.++.||+|+|.++.+.
T Consensus 160 g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~ 192 (488)
T TIGR00551 160 GRVVGVWVWNRETVETCHADAVVLATGGAGKLY 192 (488)
T ss_pred CEEEEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence 5555555443 2 3689999999999999753
No 124
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=3.3e-10 Score=103.93 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc-----eEEE--c--ccHHHHHHHc---C--C-chhHHh
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-----SLTL--F--KNGWSVLDAL---G--V-GSDLRS 121 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~-----~~~~--~--~~~~~~l~~l---g--~-~~~~~~ 121 (294)
..+||+|||+|.||++||+.+ +.|.+|+|+||......+.. ++.. . ....+.++++ + + ..++.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 468999999999999999999 99999999999764221111 1111 1 1111112111 1 1 111111
Q ss_pred c----------cccccceEEEc-CCCcEEEEecCCCCCCCcceee--eeHHHHHHHHHhcC--CCCceEeCCceeEEEEc
Q 022652 122 Q----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL--PPESVQFSSELAKIETS 186 (294)
Q Consensus 122 ~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~ 186 (294)
. +....++.+.. .++... ...+.....+..... ..-..+.+.|.+.+ .++++++++.++++..+
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~-~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~ 163 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIA-QRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCcee-ecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEe
Confidence 0 00111222221 111110 000000000000000 11245666666554 48999999999999877
Q ss_pred CCc-eEEEEe---cCCC--EEEcCEEEecCCCCcH
Q 022652 187 GNG-VTILEL---VNGT--RIYANIVIGCDGIRSP 215 (294)
Q Consensus 187 ~~~-~~~v~~---~~g~--~~~ad~vV~A~G~~S~ 215 (294)
+++ ++++.. .+++ .+.|+.||+|+|.++.
T Consensus 164 ~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 164 ENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 665 555543 4554 5899999999999875
No 125
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.22 E-value=1.2e-10 Score=78.52 Aligned_cols=80 Identities=30% Similarity=0.486 Sum_probs=61.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcEE
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL 139 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..... +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~------------------~---------------------- 40 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFD------------------P---------------------- 40 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS------------------H----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcC------------------H----------------------
Confidence 489999999999999999999999999999997631000 0
Q ss_pred EEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC
Q 022652 140 RSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG 198 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g 198 (294)
-.+..+.+.|.+. |+++++++.++++..++++ +.|+++||
T Consensus 41 ----------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 41 ----------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp ----------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred ----------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence 1122333444333 8999999999999999988 55888876
No 126
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.20 E-value=2.3e-10 Score=105.05 Aligned_cols=36 Identities=36% Similarity=0.669 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.++||+|||+|.+||++|+.+++.|.+|+||||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~ 38 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE 38 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 478999999999999999999999999999999983
No 127
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.20 E-value=3.5e-10 Score=104.84 Aligned_cols=159 Identities=23% Similarity=0.253 Sum_probs=87.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEc---ccHHH-HHHH-----cCCc-hhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWS-VLDA-----LGVG-SDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~---~~~~~-~l~~-----lg~~-~~~~ 120 (294)
.++||+|||||.||+++|+.+++.|.+|+|+||....+. +|....+. ....+ .+.+ -++. +++.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 478999999999999999999999999999999875432 11111111 11111 1111 1111 1111
Q ss_pred hc----------cccccceEEEc-CCCcEEEEecCCCCC-----CCcceeee-----eHHHHHHHHHhcC--CCCceEeC
Q 022652 121 SQ----------FLEIKGMAVKS-EDGRELRSFGFKDED-----ASQEVRAV-----ERRILLETLANQL--PPESVQFS 177 (294)
Q Consensus 121 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~~l~~~L~~~~--~~v~i~~~ 177 (294)
.. +....++.+.. .+|.... ..+.... ........ .-..+.+.|.+.+ .+++++.+
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQ-RAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEee-cccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 00 01112233322 2221110 0000000 00000001 1246677776655 48999999
Q ss_pred CceeEEEE-cCCceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 178 SELAKIET-SGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 178 ~~v~~i~~-~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+.++++.. +++.+.+|.. .+|+ .+.|+.||+|+|.++.+
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 99999887 4444555543 3554 57899999999998753
No 128
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.20 E-value=2.5e-10 Score=103.76 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=84.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc----eEE--Ecc-cH-HHHHHHc-----CCc-hhHHhc-
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT----SLT--LFK-NG-WSVLDAL-----GVG-SDLRSQ- 122 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~----~~~--~~~-~~-~~~l~~l-----g~~-~~~~~~- 122 (294)
.+||+|||+|.||+++|+.+++ |.+|+|+||.+..+.... ++. ..+ .+ ...+++. ++. +++...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6799999999999999999976 999999999875432110 111 111 11 1111111 111 111000
Q ss_pred ---------cccccceEEEc-CCCcEEEEecCCCCCCCccee----eeeHHHHHHHHHhcC-CCCceEeCCceeEEEEcC
Q 022652 123 ---------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVR----AVERRILLETLANQL-PPESVQFSSELAKIETSG 187 (294)
Q Consensus 123 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~~-~~v~i~~~~~v~~i~~~~ 187 (294)
+....++.+.. .++..... ........... ......+.+.|.+.+ .++++++++.++++..++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~--~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li~~~ 159 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLG--KEGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLIIEN 159 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeec--cCcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhheeecC
Confidence 00111222221 12211100 00000000000 012345667776655 589999999999998766
Q ss_pred CceEEEEec--CCC--EEEcCEEEecCCCCcHh
Q 022652 188 NGVTILELV--NGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 188 ~~~~~v~~~--~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+.+.++... +++ .+.|+.||+|+|.++.+
T Consensus 160 g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 160 GRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred CEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 555555543 333 58899999999998863
No 129
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.20 E-value=2.9e-10 Score=103.22 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=52.6
Q ss_pred HHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhhhhc
Q 022652 159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 159 ~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
..+.+.|.+.+ .|++|+++++|++|..++++++.|++.+|+++.+|.||.|.|.+..+.+.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 46677777666 489999999999998877777788999998899999999999998887766
No 130
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.20 E-value=4.9e-10 Score=103.10 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=86.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCC------cCceEEEc-ccH-HHHHHHc---C--Cc-hhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT------GGTSLTLF-KNG-WSVLDAL---G--VG-SDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~------~g~~~~~~-~~~-~~~l~~l---g--~~-~~~~ 120 (294)
..+||+|||||+||++||+.+++. |.+|+|+||....+. +|.+.... ..+ ...+++. | +. .++.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 357999999999999999999987 689999999875432 11111111 011 1111111 1 11 1100
Q ss_pred hc----------cccccceEEEc-CCCcEEEEecCCCCCCCcceee--eeHHHHHHHHHhcC---CCCceEeCCceeEEE
Q 022652 121 SQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL---PPESVQFSSELAKIE 184 (294)
Q Consensus 121 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~ 184 (294)
.. +....++.+.. .+|..... .+........... ..-..+.+.|.+.+ ++++++.++.++++.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 160 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVR-RFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL 160 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeee-ccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence 00 00111222222 22221110 0000000000000 12345777776654 478999999999998
Q ss_pred EcCCceEEEE---ecCCC--EEEcCEEEecCCCCcHh
Q 022652 185 TSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 185 ~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
.+++.+.++. ..+|+ .+.|+.||+|+|.++.+
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 8766555543 34563 68899999999999875
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.20 E-value=1.5e-10 Score=106.22 Aligned_cols=111 Identities=19% Similarity=0.320 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
..|||+|||||+||+++|..|+++|++|+|+|+.. . +|.... ... + .
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~--GG~~~~-~~~-------------i------------~---- 49 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-F--GGQITI-TSE-------------V------------V---- 49 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-C--CceEEe-ccc-------------c------------c----
Confidence 46999999999999999999999999999999864 2 222110 000 0 0
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.+ + ........++.+.+.+.+ .+++++ +++|+++..+++. +.|.+.++ .+.++.||+|+|++.
T Consensus 50 ------~~-----p-g~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~-~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 50 ------NY-----P-GILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDI-KTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred ------cC-----C-CCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCE-EEEEecCC-EEEEeEEEECCCCcc
Confidence 00 0 000123345555554433 267774 7788888875543 45777666 589999999999976
Q ss_pred H
Q 022652 215 P 215 (294)
Q Consensus 215 ~ 215 (294)
.
T Consensus 115 ~ 115 (555)
T TIGR03143 115 R 115 (555)
T ss_pred C
Confidence 4
No 132
>PRK08275 putative oxidoreductase; Provisional
Probab=99.20 E-value=1.9e-10 Score=105.71 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=83.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCcCceEE---E----c---ccHHHHHHHc-----CCc-hh
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLT---L----F---KNGWSVLDAL-----GVG-SD 118 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~g~~~~---~----~---~~~~~~l~~l-----g~~-~~ 118 (294)
..+||+|||||.||++||+.+++. |.+|+|+||.+..+.+..... + . ......++.+ ++. .+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 468999999999999999999987 789999999985422211110 0 0 0011111110 111 11
Q ss_pred HHhc----------cccccceEEEc-CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEE
Q 022652 119 LRSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET 185 (294)
Q Consensus 119 ~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~ 185 (294)
+... +....++.+.. .++..... ..... .........-..+.+.|.+.+ .++++++++.|+++..
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~~~~-~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVK-KVHHM-GSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeee-ccccc-CcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 0000 00112233322 11211000 00000 000000011234556665554 4899999999999987
Q ss_pred c-CCceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 186 S-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 186 ~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+ ++.+.+|.. .+|+ .+.++.||+|+|..+.+
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 6 444445542 3554 57899999999998764
No 133
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=8e-10 Score=102.67 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+||+|||+|.||++||+.+++.|.+|+|+||....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4689999999999999999999999999999998643
No 134
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.19 E-value=3.4e-10 Score=93.45 Aligned_cols=38 Identities=34% Similarity=0.556 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~----G~~V~vlE~~~~~~ 94 (294)
...||+|||||..|+++|+.|.++ |++|+|+|++....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 357999999999999999999864 79999999998654
No 135
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=3.4e-10 Score=104.68 Aligned_cols=159 Identities=23% Similarity=0.274 Sum_probs=86.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEc---ccHHHH-----HHH-cCCc-hhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWSV-----LDA-LGVG-SDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~---~~~~~~-----l~~-lg~~-~~~~ 120 (294)
..+||+|||||.|||+||+.+++.|.+|+|+||....+. +|...... ....+. ++. -++. .++.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 90 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAI 90 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHH
Confidence 468999999999999999999999999999999864321 11111111 111111 111 0111 1100
Q ss_pred hc----------cccccceEEEc-CCCcEEEEecCCCCC-----C-Ccc--eee--eeHHHHHHHHHhcC--CCCceEeC
Q 022652 121 SQ----------FLEIKGMAVKS-EDGRELRSFGFKDED-----A-SQE--VRA--VERRILLETLANQL--PPESVQFS 177 (294)
Q Consensus 121 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~-~~~--~~~--~~~~~l~~~L~~~~--~~v~i~~~ 177 (294)
.. +....++.+.. .+|.... ..+.... . ... ... ..-..+.+.|.+.+ .+++++++
T Consensus 91 ~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~ 169 (598)
T PRK09078 91 EYMCREAPAAVYELEHYGVPFSRTEEGKIYQ-RPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIE 169 (598)
T ss_pred HHHHHHHHHHHHHHHHcCCcceecCCCceee-cccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEe
Confidence 00 00111222221 1221110 0000000 0 000 000 11235666776655 48999999
Q ss_pred CceeEEEEcC-CceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 178 SELAKIETSG-NGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 178 ~~v~~i~~~~-~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+.++++..++ +.+.+|.. .+|+ .+.|+.||+|+|.++.+
T Consensus 170 ~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 170 YFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 9999998765 44555553 3554 68899999999998863
No 136
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=5.1e-10 Score=103.35 Aligned_cols=159 Identities=25% Similarity=0.299 Sum_probs=84.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEc---ccHHH-H----HHH-cCCc-hhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWS-V----LDA-LGVG-SDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~---~~~~~-~----l~~-lg~~-~~~~ 120 (294)
..+||+|||+|.|||++|+.+++.|.+|+||||....+. +|...... ....+ . ++. -++. .++.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v 90 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAI 90 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHH
Confidence 468999999999999999999999999999999753221 11111111 11111 1 110 0111 1111
Q ss_pred hcc----------ccccceEEEc-CCCcEEEEecCCCCCC-----Ccc-e-ee--eeHHHHHHHHHhcC--CCCceEeCC
Q 022652 121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDEDA-----SQE-V-RA--VERRILLETLANQL--PPESVQFSS 178 (294)
Q Consensus 121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~-~-~~--~~~~~l~~~L~~~~--~~v~i~~~~ 178 (294)
... ....++.+.. .+|.... ..+..... ... . .. ..-..+.+.|.+.+ .+++++.++
T Consensus 91 ~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~-~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~ 169 (591)
T PRK07057 91 EFMCREAPNVVYELEHFGMPFDRNADGTIYQ-RPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEW 169 (591)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeCCCCcEee-eccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCc
Confidence 000 0111222222 1221110 00000000 000 0 00 11235666666554 489999999
Q ss_pred ceeEEEEcC-CceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 179 ELAKIETSG-NGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 179 ~v~~i~~~~-~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
.++++..++ +.+.+|.. .+++ .+.++.||+|+|.++.+
T Consensus 170 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 170 MALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 999998764 44555544 3453 57899999999998865
No 137
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.18 E-value=3.4e-10 Score=105.00 Aligned_cols=159 Identities=25% Similarity=0.278 Sum_probs=85.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEc---ccHHHH-HHHc-----CCc-hhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWSV-LDAL-----GVG-SDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~---~~~~~~-l~~l-----g~~-~~~~ 120 (294)
..+||+|||+|.||++||+.+++.|.+|+|+||....+. +|...... ....+. +++. ++. .++.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 468999999999999999999999999999999875432 11111111 111111 1111 111 1111
Q ss_pred hc----------cccccceEEEc-CCCcEEEEecCCCCC-----CCcceee-----eeHHHHHHHHHhcC--CCCceEeC
Q 022652 121 SQ----------FLEIKGMAVKS-EDGRELRSFGFKDED-----ASQEVRA-----VERRILLETLANQL--PPESVQFS 177 (294)
Q Consensus 121 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~l~~~L~~~~--~~v~i~~~ 177 (294)
.. +....++.|.. .+|.... ..+.... ....... ..-..+.+.|.+.+ .+++++.+
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~-~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 207 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQ-RAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVE 207 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceee-ccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 00 00111222221 1121100 0000000 0000000 12345666666654 48999999
Q ss_pred CceeEEEEc-CCceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 178 SELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 178 ~~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+.++++..+ ++.+.+|.. .+|+ .+.|+.||+|+|.++.+
T Consensus 208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 999998876 444555544 3453 67899999999998864
No 138
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=5.7e-10 Score=102.93 Aligned_cols=159 Identities=22% Similarity=0.280 Sum_probs=85.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC------cCceEEEc---ccHHH-HHHHc-----CCc-hhHH
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWS-VLDAL-----GVG-SDLR 120 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~------~g~~~~~~---~~~~~-~l~~l-----g~~-~~~~ 120 (294)
..+||+|||+|.|||+||+.+++.|.+|+|+||....+. +|....+. ..+.+ .+++. ++. .++.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 367999999999999999999999999999999865422 11101110 11111 11111 111 1100
Q ss_pred hc----------cccccceEEEc-CCCcEEEEecCCCCCC-------Ccceee--eeHHHHHHHHHhcC--CCCceEeCC
Q 022652 121 SQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDA-------SQEVRA--VERRILLETLANQL--PPESVQFSS 178 (294)
Q Consensus 121 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~l~~~L~~~~--~~v~i~~~~ 178 (294)
.. +....++.+.. .++.... ..+..... ...... -.-..+...|.+.+ .+++++.++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQ-RPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceee-cccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCc
Confidence 00 00111222221 1121110 00000000 000000 12345677777655 488999999
Q ss_pred ceeEEEEc-CCceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 179 ELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 179 ~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
.++++..+ ++.+++|.. .+|+ .+.|+.||+|+|.++.+
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 99999875 444556554 3554 57899999999998864
No 139
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.16 E-value=8.2e-10 Score=99.67 Aligned_cols=60 Identities=30% Similarity=0.482 Sum_probs=46.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCCCcCceEEE-----------------cccHHHHHHHcCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRTGGTSLTL-----------------FKNGWSVLDALGVG 116 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~----G~~V~vlE~~~~~~~~g~~~~~-----------------~~~~~~~l~~lg~~ 116 (294)
+.||+|||||++||++|+.|+++ |++|+|+|+++.++ |+..+. .++..++++++|+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G--G~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG--GKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc--ceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCC
Confidence 36899999999999999999999 99999999998763 222111 23467788888886
Q ss_pred hhH
Q 022652 117 SDL 119 (294)
Q Consensus 117 ~~~ 119 (294)
...
T Consensus 80 ~~~ 82 (462)
T TIGR00562 80 HVL 82 (462)
T ss_pred ccc
Confidence 543
No 140
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.16 E-value=1.6e-10 Score=104.30 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 158 RRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 158 ~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
-..+.++|.+.+ .|++|+++++|++|..++++.+++...+|+.+.+|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 457778887777 4899999999999998887656788888877899999988776
No 141
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.15 E-value=1.2e-09 Score=98.26 Aligned_cols=55 Identities=31% Similarity=0.416 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 160 ~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.+.+.|.+.+...+|+++++|++|..++++ +.|.+.+|+++.+|.||.|.-....
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPHPVL 276 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCHHHH
Confidence 444555555432279999999999988776 5588888888999999999876543
No 142
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.14 E-value=1.3e-08 Score=90.31 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
..+||+|||+|++|+.+|..|++.|.+|+++|+++..+
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 57999999999999999999999999999999998774
No 143
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.14 E-value=7.8e-10 Score=101.24 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=82.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcC----ceEE--Ecc-c-HHHHHHHc-----CC-chhHHh
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG----TSLT--LFK-N-GWSVLDAL-----GV-GSDLRS 121 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g----~~~~--~~~-~-~~~~l~~l-----g~-~~~~~~ 121 (294)
+..+||+|||+|.||++||+.++ .|.+|+|+||.+..+... .++. ..+ . ....+++. ++ ..++..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 35789999999999999999996 599999999987543210 0111 111 1 11111111 11 011100
Q ss_pred c----------cccccceEEEcCCCcEEEEecCCCCCCCcceeee--eHHHHHHHHHhcC---CCCceEeCCceeEEEEc
Q 022652 122 Q----------FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELAKIETS 186 (294)
Q Consensus 122 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~ 186 (294)
. +....++.+....+.... ............... .-..+...|.+.+ .++++++++.++++..+
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~-~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~ 164 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLAL-TLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLE 164 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceee-ecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheec
Confidence 0 001122333222111100 000000000000001 1245666666654 38999999999999876
Q ss_pred C--CceEEEEe-cCCC--EEEcCEEEecCCCCcH
Q 022652 187 G--NGVTILEL-VNGT--RIYANIVIGCDGIRSP 215 (294)
Q Consensus 187 ~--~~~~~v~~-~~g~--~~~ad~vV~A~G~~S~ 215 (294)
+ +.+.+|.. .++. .+.++.||+|+|.++.
T Consensus 165 ~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 165 PETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 4 34455543 3453 4789999999999764
No 144
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=1.1e-09 Score=101.07 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=43.2
Q ss_pred HHHHHHHHhcC--CCCceEeCCceeEEEEcC----CceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 159 RILLETLANQL--PPESVQFSSELAKIETSG----NGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 159 ~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~----~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
..+.+.|.+.+ .+++++.++.|+++..++ +.+.++.. .+++ .+.|+.||+|+|.++.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 45667776655 489999999999998665 44555543 3554 57899999999998864
No 145
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=9.5e-10 Score=101.02 Aligned_cols=38 Identities=34% Similarity=0.667 Sum_probs=35.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+..+||+|||+|++|+++|+.+++.|++|+||||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 35789999999999999999999999999999998765
No 146
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.14 E-value=1.6e-09 Score=97.76 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 160 ~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
.|.+.|.+.+..++|+++++|++|+.++++ +.|.+.+|+++.+|.||.|.-
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCC
Confidence 455666665544579999999999988877 568888888899999999884
No 147
>PLN02815 L-aspartate oxidase
Probab=99.13 E-value=4e-10 Score=103.65 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=84.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc----eE--EEcc--cHHHHHHHc-----CC-chhHHhc
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT----SL--TLFK--NGWSVLDAL-----GV-GSDLRSQ 122 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~----~~--~~~~--~~~~~l~~l-----g~-~~~~~~~ 122 (294)
..+||+|||+|.|||++|+.+++.| +|+|+||.+..+.... ++ .+.+ .....+++. ++ .+++...
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~ 106 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRV 106 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHH
Confidence 4689999999999999999999999 9999999885432100 11 1110 111111111 11 1111110
Q ss_pred ----------cccccceEEEcC-CCcEEEEecCCCCCCCccee--eeeHHHHHHHHHhcC---CCCceEeCCceeEEEEc
Q 022652 123 ----------FLEIKGMAVKSE-DGRELRSFGFKDEDASQEVR--AVERRILLETLANQL---PPESVQFSSELAKIETS 186 (294)
Q Consensus 123 ----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~ 186 (294)
+....++.+... ++..... ............ ...-..+.+.|.+.+ .++++++++.++++..+
T Consensus 107 ~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~-~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 107 VCTEGPERVKELIAMGASFDHGEDGNLHLA-REGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHhCCeeeecCCCCcccc-CCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 001122333221 1111000 000000000000 012345666666654 47999999999999875
Q ss_pred CCc----eEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 187 GNG----VTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 187 ~~~----~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
+++ ++++.. .+|+ .+.|+.||+|+|.++.+
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 432 556654 2453 56899999999998764
No 148
>PRK10262 thioredoxin reductase; Provisional
Probab=99.13 E-value=9.1e-10 Score=94.54 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
...+||+|||||++|+++|..|+++|++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 46789999999999999999999999999999965
No 149
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=1.3e-09 Score=100.66 Aligned_cols=39 Identities=28% Similarity=0.518 Sum_probs=35.5
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345789999999999999999999999999999998754
No 150
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.13 E-value=7.1e-10 Score=99.10 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=45.3
Q ss_pred HHHHHHHHhcC--CCCceEeCCceeEEEEcC--CceEEEEecC-CCEEEcCEEEecCCCCcHhhhhc
Q 022652 159 RILLETLANQL--PPESVQFSSELAKIETSG--NGVTILELVN-GTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 159 ~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~--~~~~~v~~~~-g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
..+.+.|.+.+ .+++++++++|+++..++ +.+++|...+ +..+.++.||+|+|.++..+.++
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 45666776655 489999999999998763 3445555543 34789999999999988755444
No 151
>PLN02568 polyamine oxidase
Probab=99.12 E-value=2e-09 Score=98.09 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 158 RRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 158 ~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
...|.+.|.+.+++..|+++++|+.|..++++ +.|.+.+|+++.||.||+|.-.
T Consensus 241 ~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 241 YLSVIEALASVLPPGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCH
Confidence 34578888888866679999999999998777 5589999988999999998764
No 152
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.12 E-value=7.2e-10 Score=101.03 Aligned_cols=62 Identities=21% Similarity=0.384 Sum_probs=50.8
Q ss_pred HHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhhhhc
Q 022652 159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 159 ~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
..+.+.|.+.+ .|++|+++++|++|..++++++.|++.+|+++.+|.||.|.+........+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 46677777665 389999999999999877776788999998899999999999877665554
No 153
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.11 E-value=6.9e-10 Score=100.92 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecC-CC--EEEcCEEEecCCCCcHh
Q 022652 159 RILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN-GT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 159 ~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~ad~vV~A~G~~S~~ 216 (294)
..+.+.|.+.+ .+++++.++.|+++..+++.+++|...+ +. .+.++.||+|+|.++.+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcCC
Confidence 45677776655 3799999999999886655555555533 32 58999999999998753
No 154
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.10 E-value=3.4e-10 Score=98.43 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc--------CceEEEcccHHHHHHHcCCchh-HHhccccccc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--------GTSLTLFKNGWSVLDALGVGSD-LRSQFLEIKG 128 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~--------g~~~~~~~~~~~~l~~lg~~~~-~~~~~~~~~~ 128 (294)
+.||+|||||++|+.+|+.|+++|++|+|+|+++..... ...+..+..+...+...|+|.. +.....
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs---- 77 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS---- 77 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----
Confidence 358999999999999999999999999999987655321 1233444455666777887763 222111
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEE
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIE 184 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~ 184 (294)
..+...+... ........++|..+.+.|.+.+ ++++++ ..+|+++.
T Consensus 78 l~~~aad~~~---------vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 78 LIMEAADAHR---------VPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred hheecccccC---------CCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 1111100000 0011123578887888887765 567776 55777664
No 155
>PLN02612 phytoene desaturase
Probab=99.10 E-value=4.3e-08 Score=90.25 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=48.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCce----------------EEEcccHHHHHHHcCCchh
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS----------------LTLFKNGWSVLDALGVGSD 118 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~----------------~~~~~~~~~~l~~lg~~~~ 118 (294)
....+|+|||||++|+++|++|+++|++|+|+|+++.+++...+ ....++..++++++|+.+.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 34579999999999999999999999999999998765321111 1124567888899998544
No 156
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.10 E-value=1.7e-09 Score=99.99 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=30.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
|+|||+|+|||+||+.+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998733
No 157
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.10 E-value=5.1e-10 Score=91.72 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCceEeCCceeEEEEcCCceEEEEecC--CC--EEEcCEEEecCCCCcH
Q 022652 171 PESVQFSSELAKIETSGNGVTILELVN--GT--RIYANIVIGCDGIRSP 215 (294)
Q Consensus 171 ~v~i~~~~~v~~i~~~~~~~~~v~~~~--g~--~~~ad~vV~A~G~~S~ 215 (294)
-++|..+++|++|.++.+.+.+|++.| |+ .+.++.||.|+|.++.
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 478999999999998777777777754 33 5889999999999875
No 158
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.09 E-value=1.5e-09 Score=99.33 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+||+|||+|.||+++|+.+++. .+|+|+||....
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 468999999999999999999986 899999998753
No 159
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.09 E-value=1.9e-09 Score=99.49 Aligned_cols=38 Identities=26% Similarity=0.623 Sum_probs=35.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+.++||+|||+|++|+++|+.++++|.+|+|+||....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45789999999999999999999999999999999865
No 160
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.09 E-value=1.1e-09 Score=99.80 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+||||||+| +|+++|+.+++.|.+|+||||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 47899999999 9999999999999999999998764
No 161
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.09 E-value=1.4e-09 Score=101.35 Aligned_cols=37 Identities=27% Similarity=0.538 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+||+|||||.|||.+|+.+++.|.+|+|+||.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999998754
No 162
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.09 E-value=2.8e-09 Score=93.61 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=47.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCCc-------CceEE-------Ec-ccHHHHHHHcCCchhHH
Q 022652 60 DIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTG-------GTSLT-------LF-KNGWSVLDALGVGSDLR 120 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~~~~~-------g~~~~-------~~-~~~~~~l~~lg~~~~~~ 120 (294)
.|+|||||++||++|++|++++ .+|+|+|+++..+.- |..+. .. ....+.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6999999999999999999999 999999999866431 11111 12 45577889999988776
No 163
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.08 E-value=3.5e-09 Score=85.57 Aligned_cols=158 Identities=11% Similarity=0.178 Sum_probs=89.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC------CceEEEecCCCCCC-cCceEEE-----cccHHHHHHH--cCCchhHHhc
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLG------IGSLVIEQADSLRT-GGTSLTL-----FKNGWSVLDA--LGVGSDLRSQ 122 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G------~~V~vlE~~~~~~~-~g~~~~~-----~~~~~~~l~~--lg~~~~~~~~ 122 (294)
+..+|+|||||+.|+.+||+|++.+ +.|+|+|+....+. .|.+-++ .+.....|.. +.+..++.+.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 4578999999999999999999987 89999999875431 2221111 0110111111 1222222222
Q ss_pred cccccceEEEcCCCcEE---------E----EecCC---------CCCCCcceeeeeHHHHHHHHHhcC---CCCceEeC
Q 022652 123 FLEIKGMAVKSEDGREL---------R----SFGFK---------DEDASQEVRAVERRILLETLANQL---PPESVQFS 177 (294)
Q Consensus 123 ~~~~~~~~~~~~~~~~~---------~----~~~~~---------~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~ 177 (294)
+-....+.++..+.... . .+++- .........++++..|.+.+++.+ .+|++.++
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 21111111111110000 0 00000 012234556899999999999888 36899887
Q ss_pred CceeEEEEcCCceEEEEec---C-CCEEEcCEEEecCCCCcH
Q 022652 178 SELAKIETSGNGVTILELV---N-GTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 178 ~~v~~i~~~~~~~~~v~~~---~-g~~~~ad~vV~A~G~~S~ 215 (294)
+|.++..+..++..+..+ + .....++.+|++.|.|+.
T Consensus 169 -kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 169 -KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred -eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 677887444443333333 1 235678999999999986
No 164
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=4e-09 Score=96.90 Aligned_cols=37 Identities=30% Similarity=0.618 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.++||+|||+|.+|+++|+.+++.|.+|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4789999999999999999999999999999998754
No 165
>PLN02268 probable polyamine oxidase
Probab=99.07 E-value=4.1e-09 Score=94.39 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
.+|+|||||++||++|+.|.++|++|+|+|+++.++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 379999999999999999999999999999998763
No 166
>PRK07233 hypothetical protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=97.69 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 160 ~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.+.+.|.+.+ .|++|+++++|++|+.+++++. +...+++++.+|.||.|.....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~-~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVT-GVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceE-EEEeCCceEECCEEEECCCHHH
Confidence 3556666555 3789999999999998777644 3445667899999999998753
No 167
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.06 E-value=1.8e-09 Score=97.33 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.+|||+|||||++|+.+|+.|+++|++|+|+|+.+.+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 5699999999999999999999999999999997655
No 168
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.05 E-value=4.9e-09 Score=94.37 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=45.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCc------------e----EEEcccHHHHHHHcCCchh
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT------------S----LTLFKNGWSVLDALGVGSD 118 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~------------~----~~~~~~~~~~l~~lg~~~~ 118 (294)
+|+|||||++||++|+.|+++|++|+|+|+.+.++.... + ....++..++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 589999999999999999999999999999986632111 1 1124667888999998644
No 169
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.05 E-value=1.6e-09 Score=82.81 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCceE-eCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 171 PESVQ-FSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 171 ~v~i~-~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
++++. ...+|+++...+++ +.+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence 55553 47799999998888 5688999999999999999995
No 170
>PRK12839 hypothetical protein; Provisional
Probab=99.04 E-value=3.4e-09 Score=97.46 Aligned_cols=38 Identities=37% Similarity=0.558 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+.++||+|||+|.+|+++|+.|++.|.+|+|+||....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35789999999999999999999999999999998754
No 171
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.04 E-value=5.3e-09 Score=95.96 Aligned_cols=38 Identities=29% Similarity=0.636 Sum_probs=34.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
..++||||||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~G 51 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVG 51 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCc
Confidence 458999999999 89999999999999999999987653
No 172
>PRK09897 hypothetical protein; Provisional
Probab=99.04 E-value=2.5e-09 Score=96.76 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=76.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCCcCceEEEccc--HHHHHHH---cCC---chhHHhccccccc
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKN--GWSVLDA---LGV---GSDLRSQFLEIKG 128 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~~~~~g~~~~~~~~--~~~~l~~---lg~---~~~~~~~~~~~~~ 128 (294)
++|+|||||++|+++|..|.+.+ ++|+|+|+...++ .+..+... ...++-. ..+ ...+.+.... ..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G---~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~-~~ 77 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG---VGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQK-QE 77 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC---cceeecCCCChHHHHhcccccccCCChHHHHHHhhh-hh
Confidence 57999999999999999999864 5899999987653 23222221 1111111 000 0111110000 00
Q ss_pred eEEEcCCCcEEEEecCCCCCCCcceeeeeH---HHHHHHHHhcC--CC--CceEeCCceeEEEEcCCceEEEEecC-CCE
Q 022652 129 MAVKSEDGRELRSFGFKDEDASQEVRAVER---RILLETLANQL--PP--ESVQFSSELAKIETSGNGVTILELVN-GTR 200 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~L~~~~--~~--v~i~~~~~v~~i~~~~~~~~~v~~~~-g~~ 200 (294)
.......+......+ ........+.- .+..+.+.+.+ .| +.++.+++|++++.++++ +.+.+.+ +..
T Consensus 78 ~~~~~~~g~~~~~l~----~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~ 152 (534)
T PRK09897 78 DSHLQRYGVKKETLH----DRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPS 152 (534)
T ss_pred HHHHHhcCCcceeec----CCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeE
Confidence 000000000000000 00111111221 22333344433 23 677889999999988776 5577755 467
Q ss_pred EEcCEEEecCCCCc
Q 022652 201 IYANIVIGCDGIRS 214 (294)
Q Consensus 201 ~~ad~vV~A~G~~S 214 (294)
+.+|.||+|+|...
T Consensus 153 i~aD~VVLAtGh~~ 166 (534)
T PRK09897 153 ETFDLAVIATGHVW 166 (534)
T ss_pred EEcCEEEECCCCCC
Confidence 99999999999743
No 173
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=3.2e-09 Score=98.09 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+.||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 569999999999999999999999999999998754
No 174
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.03 E-value=6.3e-09 Score=90.13 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=55.3
Q ss_pred eeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCCceEEEEecC---C--CEEEcCEEEecCCCCcH-hhhhcCCCC
Q 022652 155 AVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRSP-IAKWIGFSE 224 (294)
Q Consensus 155 ~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~S~-~~~~~~~~~ 224 (294)
.++-..|.+.|.+.+ ++++++++++|++|++.+++.|.|...| + .++.|++|++.+|.+|- +.+..|+++
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e 255 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPE 255 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChh
Confidence 466777888887766 4899999999999999999878777643 2 47999999999999884 555556654
No 175
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=5e-10 Score=98.06 Aligned_cols=142 Identities=19% Similarity=0.321 Sum_probs=87.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC--------CCcCceEEEcccHHHHHHHcCCchhHHhccccccc
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--------RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~--------~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 128 (294)
..|||+|||||.||+.||++.+|.|.++.|+--...- .-+|-+-+.- .+.++.|| .......+..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~l---vrEIDALG---G~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHL---VREIDALG---GLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCccccee---EEeehhcc---chHHHhhhhcC
Confidence 3599999999999999999999999999999876431 1122221111 11122222 11111112222
Q ss_pred eEEEc---CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCC-ceEEEEecCCCEE
Q 022652 129 MAVKS---EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGN-GVTILELVNGTRI 201 (294)
Q Consensus 129 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~ 201 (294)
+.+.- ..|.. ......++++..+.+.+.+.+ ++..++ ...|.++..+++ .+++|.+.+|..+
T Consensus 77 IQ~r~LN~sKGPA----------Vra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~ 145 (621)
T COG0445 77 IQFRMLNSSKGPA----------VRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEF 145 (621)
T ss_pred CchhhccCCCcch----------hcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCee
Confidence 22211 11111 122334567777766666655 466666 457777777555 5789999999999
Q ss_pred EcCEEEecCCCCcH
Q 022652 202 YANIVIGCDGIRSP 215 (294)
Q Consensus 202 ~ad~vV~A~G~~S~ 215 (294)
.|+.||+++|.+-.
T Consensus 146 ~a~aVVlTTGTFL~ 159 (621)
T COG0445 146 HAKAVVLTTGTFLR 159 (621)
T ss_pred ecCEEEEeeccccc
Confidence 99999999998743
No 176
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.03 E-value=2.1e-09 Score=106.32 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+..+||||||+|.||++||+.+++.|.+|+|+||.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 34689999999999999999999999999999998765
No 177
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.02 E-value=2.1e-09 Score=96.29 Aligned_cols=35 Identities=40% Similarity=0.534 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..|||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 36899999999999999999999999999999975
No 178
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=6.1e-09 Score=96.17 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=44.4
Q ss_pred HHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecC-CC--EEEc-CEEEecCCCCcHhhhhc
Q 022652 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN-GT--RIYA-NIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 160 ~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~a-d~vV~A~G~~S~~~~~~ 220 (294)
.+...|.+.+ .++++++++.++++..+++.+.+|...+ ++ .+.+ +.||+|+|.++...+++
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 4556666655 4899999999999987666666666543 32 4676 78999999999865444
No 179
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.02 E-value=5.2e-09 Score=96.45 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCceEEEecCCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQ----RLGIGSLVIEQADSL 93 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~----~~G~~V~vlE~~~~~ 93 (294)
||+|||||.|||+||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999998743
No 180
>PLN02576 protoporphyrinogen oxidase
Probab=99.01 E-value=1.2e-08 Score=92.94 Aligned_cols=38 Identities=39% Similarity=0.674 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~-G~~V~vlE~~~~~~ 94 (294)
..+||+|||||++||++|++|+++ |++|+|+|+.+.++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 467999999999999999999999 99999999998773
No 181
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.01 E-value=4.8e-09 Score=94.62 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..|||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 47999999999999999999999999999999876
No 182
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.01 E-value=3.9e-09 Score=94.68 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 689999999999999999999999999999985
No 183
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.01 E-value=2.3e-09 Score=96.72 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.+|||+|||||++|+.+|..|+++|++|+|+|+.+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4699999999999999999999999999999997644
No 184
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.99 E-value=4.1e-10 Score=103.76 Aligned_cols=37 Identities=30% Similarity=0.646 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.++||||||+|.+|+++|+.+++.|.+|+||||.+..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 4789999999999999999999999999999999865
No 185
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.99 E-value=3.2e-09 Score=95.08 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 368999999999999999999999999999999864
No 186
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.99 E-value=7.8e-09 Score=93.46 Aligned_cols=34 Identities=29% Similarity=0.645 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
..|||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4799999999999999999999999999999986
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99 E-value=4.7e-09 Score=94.62 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+|||+||||||+|+++|..++++|++|+|+|+...+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~ 38 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence 589999999999999999999999999999986544
No 188
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.98 E-value=6.4e-10 Score=88.79 Aligned_cols=33 Identities=45% Similarity=0.762 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
||+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988763
No 189
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=1.4e-08 Score=98.29 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999874
No 190
>PRK14694 putative mercuric reductase; Provisional
Probab=98.98 E-value=1.2e-08 Score=92.10 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=34.2
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...+|||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3468999999999999999999999999999999864
No 191
>PLN02676 polyamine oxidase
Probab=98.97 E-value=4.6e-08 Score=88.45 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCC--------CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 158 RRILLETLANQLP--------PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 158 ~~~l~~~L~~~~~--------~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
...+.+.|.+.+. +.+|++|++|++|..++++ +.|.+.+|+++.||.||+|......
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-VTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc-EEEEECCCCEEEeCEEEEccChHHh
Confidence 4567777777651 3579999999999998887 4589999989999999999975433
No 192
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.96 E-value=9.5e-09 Score=88.66 Aligned_cols=38 Identities=37% Similarity=0.686 Sum_probs=35.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
....||+|||||.+||++|++|.+.|++|+|+|.++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 35679999999999999999999999999999999876
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.96 E-value=9.3e-09 Score=90.88 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=69.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
..+|+|||||+||+++|..|+++|. +|+|+++.+.... .+ ..+...+...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y-~r--------------~~l~~~~~~~------------- 54 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY-ER--------------PPLSKSMLLE------------- 54 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC-CC--------------CCCCHHHHCC-------------
Confidence 4579999999999999999999987 7999998865410 00 0000000000
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.. .... .....+ .+.+ .+++++.++.|+.+..+... |.+.+|+++.+|.||+|+|....
T Consensus 55 -~~-----------~~~~-~~~~~~---~~~~--~~i~~~~g~~V~~id~~~~~---v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 55 -DS-----------PQLQ-QVLPAN---WWQE--NNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred -CC-----------cccc-ccCCHH---HHHH--CCCEEEcCCEEEEEECCCCE---EEECCCCEEEcCEEEEccCCCCC
Confidence 00 0000 000111 1111 27899999999999765432 67778888999999999998763
No 194
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.95 E-value=1e-08 Score=90.03 Aligned_cols=107 Identities=24% Similarity=0.378 Sum_probs=77.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+...- +
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~---------------------- 181 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL-----------------M---------------------- 181 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh-----------------C----------------------
Confidence 4579999999999999999999999999999987541000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc--H
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS--P 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S--~ 215 (294)
+. .....+.+.|.+ .+++++++++|+++..++++ +.+.+.+|+++.+|.||.|+|..+ .
T Consensus 182 ------------~~----~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~~ 242 (377)
T PRK04965 182 ------------PP----EVSSRLQHRLTE--MGVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLRPNTA 242 (377)
T ss_pred ------------CH----HHHHHHHHHHHh--CCCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCCcchH
Confidence 00 001223333332 28999999999999876554 558888998999999999999865 3
Q ss_pred hhhhcCC
Q 022652 216 IAKWIGF 222 (294)
Q Consensus 216 ~~~~~~~ 222 (294)
+.+..|+
T Consensus 243 l~~~~gl 249 (377)
T PRK04965 243 LARRAGL 249 (377)
T ss_pred HHHHCCC
Confidence 4444444
No 195
>PRK06370 mercuric reductase; Validated
Probab=98.95 E-value=7.4e-09 Score=93.39 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
.+|||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999999999999864
No 196
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.94 E-value=2.8e-09 Score=102.70 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||||||++|+.|+++|++|+|+|+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 4689999999999999999999999999999998865
No 197
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.94 E-value=6.3e-09 Score=91.12 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.||+|||||++|+.+|+.|+++|++|+|+|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987754
No 198
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.93 E-value=1.8e-08 Score=90.86 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.|||+|||||++|+.+|..|+++|++|+|+|+ +.+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~ 35 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL 35 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence 38999999999999999999999999999999 544
No 199
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.93 E-value=8e-09 Score=92.68 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|||+|||||++|+.+|..|+++|++|+|+|+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 6899999999999999999999999999999963
No 200
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.93 E-value=1.6e-08 Score=91.12 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~----G~~V~vlE~~~~~~ 94 (294)
.+.+|+|||||++||++|++|++. |.+|+|+|+.+.++
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 357899999999999999999995 68999999998764
No 201
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.93 E-value=1.3e-08 Score=89.94 Aligned_cols=99 Identities=26% Similarity=0.337 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.....
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------------------------------- 184 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNA--------------------------------------- 184 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhc---------------------------------------
Confidence 45799999999999999999999999999999875411000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
+. .....+.+.+.+ .|++++++++|+++.. ++. +.+.+.+|+++.+|.||.|.|....
T Consensus 185 ------------~~----~~~~~l~~~l~~--~GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 185 ------------PP----PVQRYLLQRHQQ--AGVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred ------------CH----HHHHHHHHHHHH--CCCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCChh
Confidence 00 001122222222 3899999999999976 333 4578888989999999999998653
No 202
>PRK06116 glutathione reductase; Validated
Probab=98.93 E-value=7.3e-09 Score=93.11 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
.+|||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999986
No 203
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=3.6e-09 Score=94.92 Aligned_cols=39 Identities=38% Similarity=0.716 Sum_probs=35.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
....+|+|||||++||+||..|.+.|++|+|+|.++.++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 356799999999999999999999999999999998763
No 204
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.3e-09 Score=91.32 Aligned_cols=141 Identities=22% Similarity=0.354 Sum_probs=87.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC-CC-------CcCceEEEcccHHHHHHHcCCchhHHhcccccc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LR-------TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK 127 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~-~~-------~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~ 127 (294)
...|||+|||||.||+.+|.+.+|.|.+.+++-.+-. ++ -+|.+-+. ++++.+..+.+....++..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~------LmrEVDALdGl~~rvcD~s 99 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGH------LMREVDALDGLCSRVCDQS 99 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccce------eeeeehhhcchHhhhhhhh
Confidence 4689999999999999999999999999999987532 11 12222111 1112222222222222222
Q ss_pred ceEEEc---CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC---CCCceEeCCceeEEEE-cCCc----eEEEEec
Q 022652 128 GMAVKS---EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIET-SGNG----VTILELV 196 (294)
Q Consensus 128 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~-~~~~----~~~v~~~ 196 (294)
++.+.- ..|..+ .....+++|..+.+.|.+.. ++..|+.+ .|.++.. +++. +.+|.+.
T Consensus 100 ~vq~k~LNrs~GPAV----------wg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~ 168 (679)
T KOG2311|consen 100 GVQYKVLNRSKGPAV----------WGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLV 168 (679)
T ss_pred hhhHHHhhccCCCcc----------cChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEe
Confidence 222211 111111 22234688888888888877 46677755 4555543 3331 5688999
Q ss_pred CCCEEEcCEEEecCCCC
Q 022652 197 NGTRIYANIVIGCDGIR 213 (294)
Q Consensus 197 ~g~~~~ad~vV~A~G~~ 213 (294)
||..+.|+.||+.+|.+
T Consensus 169 dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 169 DGTVVYAESVILTTGTF 185 (679)
T ss_pred cCcEeccceEEEeeccc
Confidence 99999999999999976
No 205
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.92 E-value=3.1e-09 Score=68.81 Aligned_cols=32 Identities=47% Similarity=0.681 Sum_probs=29.7
Q ss_pred EECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 63 IVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 63 IIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999999874
No 206
>PLN02507 glutathione reductase
Probab=98.91 E-value=2.8e-08 Score=90.21 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEec
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~ 89 (294)
..+|||+|||||++|+.+|..++++|++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999997
No 207
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.89 E-value=1.6e-08 Score=91.49 Aligned_cols=33 Identities=33% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEec
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~ 89 (294)
..||++|||||++|+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 208
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.89 E-value=1e-08 Score=98.11 Aligned_cols=38 Identities=34% Similarity=0.505 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
....+|+|||||+||+++|+.|+++|++|+|+|+.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 34679999999999999999999999999999998865
No 209
>PRK14727 putative mercuric reductase; Provisional
Probab=98.88 E-value=2.8e-08 Score=89.95 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+.++||+|||||++|+.+|..|++.|.+|+|+|+.+.+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 45799999999999999999999999999999998655
No 210
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.88 E-value=2.3e-08 Score=97.68 Aligned_cols=36 Identities=33% Similarity=0.594 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.+||+|||||+||+++|+.|++.|++|+|+|+.+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 579999999999999999999999999999999865
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.88 E-value=8.7e-09 Score=91.29 Aligned_cols=44 Identities=36% Similarity=0.727 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEE
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~ 102 (294)
.+||++|||||++|..+|..+++.|.+|.++|+.... +|.+...
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l--GGtCln~ 46 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL--GGTCLNV 46 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc--CceEEee
Confidence 5799999999999999999999999999999999744 5665544
No 212
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.6e-09 Score=86.19 Aligned_cols=153 Identities=26% Similarity=0.333 Sum_probs=97.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
...|||+||||||||.++|.+.+|+|++.-|+-.+= +|. .|+.+++..-+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf----GGQ----------vldT~~IENfI---------------- 258 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF----GGQ----------VLDTMGIENFI---------------- 258 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh----CCe----------eccccchhhee----------------
Confidence 356999999999999999999999999876652211 221 22222221100
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEc--CCceEEEEecCCCEEEcCEEEecCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
.....+-.+|...|.+.. ..+++.--.+.++++.. +++-..|++++|-.+.++.||+++|
T Consensus 259 ----------------sv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstG 322 (520)
T COG3634 259 ----------------SVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATG 322 (520)
T ss_pred ----------------ccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecC
Confidence 000123346666666665 36777766777777763 2345679999999999999999999
Q ss_pred CCcHhhhhcCCCC-CccccceEEEEEEeCCCCCCCCCceEEEEeCCeEE
Q 022652 212 IRSPIAKWIGFSE-PKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRA 259 (294)
Q Consensus 212 ~~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (294)
+.= +.++.+- .+|. ... ..+|++.+..-|++.-..++|.|.+.
T Consensus 323 ArW---Rn~nvPGE~e~r-nKG-VayCPHCDGPLF~gK~VAVIGGGNSG 366 (520)
T COG3634 323 ARW---RNMNVPGEDEYR-NKG-VAYCPHCDGPLFKGKRVAVIGGGNSG 366 (520)
T ss_pred cch---hcCCCCchHHHh-hCC-eeeCCCCCCcccCCceEEEECCCcch
Confidence 742 2333321 1121 111 23577777767888888888877554
No 213
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.87 E-value=6.2e-08 Score=80.56 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=47.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceE---------------E-----EcccHHHHHHHcCCc
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL---------------T-----LFKNGWSVLDALGVG 116 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~---------------~-----~~~~~~~~l~~lg~~ 116 (294)
...+|+|||+|++||++|+.|+++ ++|+|+|.+...+...... . -+++..++++.+|+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 457899999999999999999987 7999999998764322221 1 156778999999875
Q ss_pred hh
Q 022652 117 SD 118 (294)
Q Consensus 117 ~~ 118 (294)
..
T Consensus 86 t~ 87 (447)
T COG2907 86 TK 87 (447)
T ss_pred Cc
Confidence 43
No 214
>PRK12831 putative oxidoreductase; Provisional
Probab=98.87 E-value=5.8e-09 Score=93.78 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 45689999999999999999999999999999998765
No 215
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.86 E-value=2.9e-08 Score=89.53 Aligned_cols=100 Identities=23% Similarity=0.364 Sum_probs=75.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+... +..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~-------------------- 216 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------LDD-------------------- 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------CCH--------------------
Confidence 468999999999999999999999999999998754110 000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
-....+.+.|.+ .|++++.+++|+++..++++ +.+.+.+|+++.+|.||.|+|.....
T Consensus 217 ------------------~~~~~l~~~l~~--~gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 217 ------------------EISDALSYHLRD--SGVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred ------------------HHHHHHHHHHHH--cCCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCCccc
Confidence 011223333332 38999999999999876655 44777788889999999999987654
No 216
>PRK13748 putative mercuric reductase; Provisional
Probab=98.86 E-value=3.6e-08 Score=91.14 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
..|||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999987
No 217
>PRK06116 glutathione reductase; Validated
Probab=98.85 E-value=3.2e-08 Score=88.97 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||.+|+.+|..|++.|.+|+++++.+.+....
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 206 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF---------------------------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc----------------------------------------
Confidence 4589999999999999999999999999999887541000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. -....+.+.|.+ .|++++++++|+++..++++.+.+.+.+|+++.+|.||.|+|.....
T Consensus 207 ------------~~----~~~~~l~~~L~~--~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 ------------DP----DIRETLVEEMEK--KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred ------------CH----HHHHHHHHHHHH--CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 00 001123333332 38999999999999876655345778888889999999999986553
No 218
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.84 E-value=1.9e-08 Score=91.61 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
..++||+|||||.|||.+|+.++..|++|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 357899999999999999999999999999999987654
No 219
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.84 E-value=3.6e-08 Score=88.50 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+... +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~---------------------- 205 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------F---------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------c----------------------
Confidence 358999999999999999999999999999998754110 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC-CEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~S~~ 216 (294)
.. -.+..+.+.|.+ .|++++.++.|+++..+.++...+.+.++ +.+.+|.||.|.|.....
T Consensus 206 ------------d~----~~~~~~~~~l~~--~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 206 ------------DS----MISETITEEYEK--EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ------------CH----HHHHHHHHHHHH--cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 00 011223333332 38999999999999876544344777777 579999999999987654
No 220
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.83 E-value=3e-08 Score=86.32 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=87.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC------CcCceEEEcccH-HH--HHHHc----CCchhHH-----h
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR------TGGTSLTLFKNG-WS--VLDAL----GVGSDLR-----S 121 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~------~~g~~~~~~~~~-~~--~l~~l----g~~~~~~-----~ 121 (294)
||+|||+|+|||++|+.|++. ++|+|+-|.+... .+|.+..+.+.. .+ .-+.+ |+-++-. .
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 9999999987441 344444554321 10 01111 1111100 0
Q ss_pred c------cccccceEEEcCC-CcEEEEecCCCCCCCccee---eeeHHHHHHHHHhcC---CCCceEeCCceeEEEEcCC
Q 022652 122 Q------FLEIKGMAVKSED-GRELRSFGFKDEDASQEVR---AVERRILLETLANQL---PPESVQFSSELAKIETSGN 188 (294)
Q Consensus 122 ~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~---~~v~i~~~~~v~~i~~~~~ 188 (294)
. .....++.|-... |......+-.. ...... .-.-..+++.|.+.+ ++++++.++.+.++..+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggH--S~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~ 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGH--SRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeeccc--CCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC
Confidence 0 0001122222211 11111000000 000000 022346777777766 5899999999999988887
Q ss_pred -ceEEEEecCC----CEEEcCEEEecCCCCcHh
Q 022652 189 -GVTILELVNG----TRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 189 -~~~~v~~~~g----~~~~ad~vV~A~G~~S~~ 216 (294)
.+.+|.+.+. ..+.++.||+|+|..+.+
T Consensus 166 ~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 166 IGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred ceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 3335555432 468899999999998765
No 221
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.83 E-value=4e-08 Score=87.14 Aligned_cols=101 Identities=24% Similarity=0.375 Sum_probs=77.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+.+++|||||+.|+..|..+++.|.+|+|+|+.+.+-+.- .+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~------------------D~------------------- 214 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE------------------DP------------------- 214 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC------------------CH-------------------
Confidence 45679999999999999999999999999999999762110 00
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCC--EEEcCEEEecCCCCc
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIRS 214 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~S 214 (294)
--...+.+.|.+ .+++++.+++++.++..+++ +.+.+++|+ ++++|.|++|.|...
T Consensus 215 -------------------ei~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 215 -------------------EISKELTKQLEK--GGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred -------------------HHHHHHHHHHHh--CCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 111233333333 47899999999999988777 558888775 689999999999765
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
..
T Consensus 273 n~ 274 (454)
T COG1249 273 NT 274 (454)
T ss_pred CC
Confidence 43
No 222
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.83 E-value=2.6e-08 Score=89.50 Aligned_cols=110 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 60 DIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
+|+|||||++|+++|..|++.| .+|+|+|+.+....... ++. .+.. +
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~---------------~~~-------------~~~~--~- 50 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC---------------GLP-------------YFVG--G- 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC---------------CCc-------------eEec--c-
Confidence 6999999999999999999975 58999999885411000 000 0000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEe-cCCCEEE--cCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGTRIY--ANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~-~~g~~~~--ad~vV~A~G~~S 214 (294)
............ .+.+.+ .+++++++++|+++..+++. +.+.. .++..+. +|.+|+|+|...
T Consensus 51 --------~~~~~~~~~~~~----~~~~~~--~gv~~~~~~~V~~id~~~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 51 --------FFDDPNTMIART----PEEFIK--SGIDVKTEHEVVKVDAKNKT-ITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred --------ccCCHHHhhcCC----HHHHHH--CCCeEEecCEEEEEECCCCE-EEEEECCCCCEEEecCCEEEECCCCCC
Confidence 000000000001 111211 27899999999999876654 33433 2355666 999999999865
Q ss_pred H
Q 022652 215 P 215 (294)
Q Consensus 215 ~ 215 (294)
.
T Consensus 116 ~ 116 (444)
T PRK09564 116 I 116 (444)
T ss_pred C
Confidence 4
No 223
>PTZ00058 glutathione reductase; Provisional
Probab=98.83 E-value=2.1e-08 Score=91.78 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
..+|||+|||||++|..+|..+++.|.+|+|+|+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 35799999999999999999999999999999986
No 224
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.82 E-value=1.7e-08 Score=96.95 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||||+||+++|+.|+++|++|+|+|+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4579999999999999999999999999999998765
No 225
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.81 E-value=4.7e-08 Score=88.23 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=73.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||.+|+.+|..|++.|.+|+++|+.+.+.+.. ..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~-------------------- 211 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGE------------------DA-------------------- 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCC------------------CH--------------------
Confidence 3589999999999999999999999999999987541100 00
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC--CEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~S~ 215 (294)
-....+.+.|.+ .+++++++++|+++..++++ +.+.+.+| +++.+|.||.|+|....
T Consensus 212 ------------------~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 212 ------------------EVSKVVAKALKK--KGVKILTNTKVTAVEKNDDQ-VVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred ------------------HHHHHHHHHHHH--cCCEEEeCCEEEEEEEeCCE-EEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 001122333332 28999999999999876665 33666666 47999999999998765
Q ss_pred hh
Q 022652 216 IA 217 (294)
Q Consensus 216 ~~ 217 (294)
..
T Consensus 271 ~~ 272 (461)
T TIGR01350 271 TE 272 (461)
T ss_pred CC
Confidence 43
No 226
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=4.3e-08 Score=88.50 Aligned_cols=100 Identities=19% Similarity=0.340 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+.-
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 211 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE---------------------------------------- 211 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC----------------------------------------
Confidence 3589999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC---CEEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~S 214 (294)
.. -....+.+.|.+ .+++++++++|+++..++++ +.+.+.++ +++.+|.||.|+|...
T Consensus 212 ------------~~----~~~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 212 ------------DK----EISKLAERALKK--RGIKIKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred ------------CH----HHHHHHHHHHHH--cCCEEEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 00 001122233322 28999999999999876665 44666655 5799999999999876
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
..
T Consensus 273 ~~ 274 (462)
T PRK06416 273 NT 274 (462)
T ss_pred CC
Confidence 43
No 227
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.81 E-value=7.5e-08 Score=86.87 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
.+|||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4699999999999999999999999999999993
No 228
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.81 E-value=1.2e-07 Score=82.83 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=48.4
Q ss_pred HHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCC--CEEEcCEEEecCCCC-cH-hhhhc-CCCCC
Q 022652 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIR-SP-IAKWI-GFSEP 225 (294)
Q Consensus 160 ~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~-S~-~~~~~-~~~~~ 225 (294)
.|.+.|.+.+ .|++++.+++|+++..+++++..|.+.++ ..+.||.+|+|+|+| |. +.+.+ ++.+|
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep 336 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP 336 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence 4455566555 47899999999999988877666776665 479999999999999 75 43444 34343
No 229
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=3.2e-08 Score=89.37 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5899999999999999999999999999999863
No 230
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.79 E-value=4.7e-08 Score=87.52 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=67.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+|+|||||++|+.+|..|++. +.+|+|+|+.+...-...++. ..+. +
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp---------------~~~~---------------~ 51 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALP---------------YYIG---------------E 51 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcc---------------hhhc---------------C
Confidence 3799999999999999999987 679999999985421100000 0000 0
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC-CC--EEEcCEEEecCCCC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN-GT--RIYANIVIGCDGIR 213 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~ad~vV~A~G~~ 213 (294)
. . . .......+.... +.+. .+++++.+++|++|..++.. +.+...+ ++ ++.+|.+|+|+|..
T Consensus 52 ~----~---~--~~~~~~~~~~~~----~~~~-~~i~v~~~~~V~~Id~~~~~-v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 52 V----V---E--DRKYALAYTPEK----FYDR-KQITVKTYHEVIAINDERQT-VTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred c----c---C--CHHHcccCCHHH----HHHh-CCCEEEeCCEEEEEECCCCE-EEEEECCCCcEEeeecCEEEECCCCC
Confidence 0 0 0 000000011112 2222 27899999999999876654 3344332 22 46899999999987
Q ss_pred cH
Q 022652 214 SP 215 (294)
Q Consensus 214 S~ 215 (294)
..
T Consensus 117 ~~ 118 (438)
T PRK13512 117 AN 118 (438)
T ss_pred CC
Confidence 64
No 231
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.79 E-value=2.2e-08 Score=90.87 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
.|||+|||||++|+.+|..|+++|++|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 689999999999999999999999999999973
No 232
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.78 E-value=4.5e-08 Score=80.33 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=98.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCC---------cCceEEEcccHHHH---------H----H
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT---------GGTSLTLFKNGWSV---------L----D 111 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~---------~g~~~~~~~~~~~~---------l----~ 111 (294)
...+|.||||||++|++.|.+|.-+ +++|.|+|+...... ...++.+.|.++++ + +
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 4689999999999999999999877 999999999876531 12234445554322 1 1
Q ss_pred HcCCc-------------------hhHHhcc--ccccceEEEcCCCcEEEEecCC----CCCCCcceeeeeHHHHHHHHH
Q 022652 112 ALGVG-------------------SDLRSQF--LEIKGMAVKSEDGRELRSFGFK----DEDASQEVRAVERRILLETLA 166 (294)
Q Consensus 112 ~lg~~-------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~ 166 (294)
+-++. +.+...+ ..+.++++... ..+..++.. .....+....++...+...+.
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg--~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ 203 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEG--SEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG 203 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeecc--chhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence 11111 1111111 11222222221 111111110 001122334567777777777
Q ss_pred hcC--CCCceEeCCceeEEEEcCCc----eEEEEecCCCEEEcCEEEecCCCCcHhhhhc-CCC
Q 022652 167 NQL--PPESVQFSSELAKIETSGNG----VTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS 223 (294)
Q Consensus 167 ~~~--~~v~i~~~~~v~~i~~~~~~----~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~-~~~ 223 (294)
+.+ .+.+++.|-+++.+.++.+. -+.|....+++++++.+|-|+|..|.....+ |..
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~ 267 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE 267 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence 766 37789999999999877653 1234444567899999999999988755555 554
No 233
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.78 E-value=1.1e-07 Score=90.99 Aligned_cols=108 Identities=24% Similarity=0.370 Sum_probs=76.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.... +
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~-----------------l---------------------- 185 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQ-----------------L---------------------- 185 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhh-----------------c----------------------
Confidence 3579999999999999999999999999999987531000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcC-CceEEEEecCCCEEEcCEEEecCCCCcH-
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSG-NGVTILELVNGTRIYANIVIGCDGIRSP- 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~~ad~vV~A~G~~S~- 215 (294)
.. -....+.+.|.+ .|+++++++.++++..++ +....+.+.+|+++.+|.||.|.|....
T Consensus 186 ------------d~----~~~~~l~~~L~~--~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 186 ------------DQ----MGGEQLRRKIES--MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred ------------CH----HHHHHHHHHHHH--CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 00 001122333322 289999999999997653 2334578889999999999999997654
Q ss_pred -hhhhcCC
Q 022652 216 -IAKWIGF 222 (294)
Q Consensus 216 -~~~~~~~ 222 (294)
+.+..|+
T Consensus 248 ~L~~~~Gl 255 (847)
T PRK14989 248 KLATQCGL 255 (847)
T ss_pred hHHhhcCc
Confidence 3344443
No 234
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.77 E-value=1e-07 Score=91.04 Aligned_cols=99 Identities=24% Similarity=0.411 Sum_probs=72.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.... +
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~-----------------l---------------------- 180 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQ-----------------L---------------------- 180 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhh-----------------c----------------------
Confidence 4579999999999999999999999999999877441000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.. .....+.+.|.+ .|+++++++.++++..++ ....|.+.+|+++.+|.||.|.|...
T Consensus 181 ------------d~----~~~~~l~~~l~~--~GV~v~~~~~v~~i~~~~-~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 181 ------------DQ----TAGRLLQRELEQ--KGLTFLLEKDTVEIVGAT-KADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred ------------CH----HHHHHHHHHHHH--cCCEEEeCCceEEEEcCC-ceEEEEECCCCEEEcCEEEECCCCCc
Confidence 00 001122333322 289999999999997543 33568889999999999999999764
No 235
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.77 E-value=6e-08 Score=81.57 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=35.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.+|||+|||+||.|-.+|+..++.|++.+++|++...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 5899999999999999999999999999999998866
No 236
>PLN02507 glutathione reductase
Probab=98.76 E-value=9.5e-08 Score=86.78 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+++.+.+... +. .
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-----~d-------------~-------------------- 244 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-----FD-------------D-------------------- 244 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-----cC-------------H--------------------
Confidence 458999999999999999999999999999988754110 00 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
-.+..+.+.|.+ .|++++++++|++++.++++ +.+.+.+|+++.+|.||.|.|.....
T Consensus 245 ------------------~~~~~l~~~l~~--~GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 245 ------------------EMRAVVARNLEG--RGINLHPRTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred ------------------HHHHHHHHHHHh--CCCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecCCCCC
Confidence 011223333332 38999999999999876555 44777788889999999999986653
No 237
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.75 E-value=8.9e-08 Score=86.64 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~---------------------------------------- 219 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE---------------------------------------- 219 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC----------------------------------------
Confidence 3589999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEc-CCceEEEEecCCC--EEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETS-GNGVTILELVNGT--RIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~-~~~~~~v~~~~g~--~~~ad~vV~A~G~~S 214 (294)
.. -....+.+.|.+ .|++++.+++|+++..+ ++++..+.+.+|+ ++.+|.||.|+|...
T Consensus 220 ------------~~----~~~~~l~~~l~~--~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 220 ------------DA----ELSKEVARLLKK--LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred ------------CH----HHHHHHHHHHHh--cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 00 001122233322 28999999999999752 3443434455663 699999999999876
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
..
T Consensus 282 ~~ 283 (472)
T PRK05976 282 NT 283 (472)
T ss_pred CC
Confidence 53
No 238
>PRK07846 mycothione reductase; Reviewed
Probab=98.75 E-value=1e-07 Score=85.57 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+... .
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~---------------------- 205 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------L---------------------- 205 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------c----------------------
Confidence 458999999999999999999999999999998754100 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. +-.+....+.+ .+++++++++|++++.++++ +.+.+.+|+++.+|.||.|+|.....
T Consensus 206 ------------d~-----~~~~~l~~l~~--~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 206 ------------DD-----DISERFTELAS--KRWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred ------------CH-----HHHHHHHHHHh--cCeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCccCc
Confidence 00 00011122222 26899999999999876555 44777788889999999999987653
No 239
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.75 E-value=9.5e-08 Score=82.72 Aligned_cols=37 Identities=46% Similarity=0.728 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLR 94 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~~~ 94 (294)
..+|||||||+|||+||..|.+.|. +|+|+|..+.++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 4589999999999999999997765 899999998773
No 240
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.75 E-value=1e-07 Score=86.02 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.+++|||+|..|+.+|..|++.|.+|+++++.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE----------------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence 579999999999999999999999999999887542100
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. -....+.+.|.+ .|++++++++|++++.++++ +.+.+.+|+++.+|.||.|.|.....
T Consensus 217 -----------d~----~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 217 -----------DA----DAAEVLEEVFAR--RGMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -----------CH----HHHHHHHHHHHH--CCcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecCCcCC
Confidence 00 011223333332 28999999999999876665 44777788889999999999987654
No 241
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=78.14 Aligned_cols=43 Identities=35% Similarity=0.638 Sum_probs=37.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCce
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~ 99 (294)
..+||+|||+|+|||.+|.+|+.+|.+|+|+|+..+..-+|++
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 4689999999999999999999999999999998876545544
No 242
>PLN02546 glutathione reductase
Probab=98.74 E-value=2.9e-07 Score=84.33 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEec
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~ 89 (294)
.+|||+|||||++|..+|..++++|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 243
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.74 E-value=3.8e-08 Score=88.92 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEecC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQA 90 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~-G~~V~vlE~~ 90 (294)
.+|||+|||||++|..+|..++++ |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 479999999999999999999997 9999999984
No 244
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.74 E-value=1.2e-07 Score=85.24 Aligned_cols=100 Identities=20% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||.+|+.+|..|++.|.+|+++|+.+.+... ..+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~-------------------- 207 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDD-------------------- 207 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCH--------------------
Confidence 457999999999999999999999999999987754100 000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
-.+..+.+.|.+ .|++++.+++|+++..++++ ..+.+.+++++.+|.||.|+|.....
T Consensus 208 ------------------~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 208 ------------------DMRALLARNMEG--RGIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred ------------------HHHHHHHHHHHH--CCCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 001122333332 38999999999999876655 44777788889999999999986543
No 245
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=1.1e-07 Score=85.25 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+....
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE---------------------------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC----------------------------------------
Confidence 4589999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.. -.+..+.+.|.+ .|++++++++|+++..+++. +.+. .+++++.+|.||.|+|....
T Consensus 197 ------------~~----~~~~~~~~~l~~--~GI~i~~~~~V~~i~~~~~~-v~v~-~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 197 ------------EP----SVAALAKQYMEE--DGITFLLNAHTTEVKNDGDQ-VLVV-TEDETYRFDALLYATGRKPN 254 (438)
T ss_pred ------------CH----HHHHHHHHHHHH--cCCEEEcCCEEEEEEecCCE-EEEE-ECCeEEEcCEEEEeeCCCCC
Confidence 00 001112222222 28999999999999876544 3244 35668999999999998765
No 246
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.74 E-value=6.4e-08 Score=87.35 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
|||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999875
No 247
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.73 E-value=4.2e-07 Score=78.43 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=46.7
Q ss_pred HHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 160 ~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
+..+.+.+.+ .|++++++++|.++...++.+..|.+.+|+.+.+|.||+|.|..+.
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 4455555555 3799999999999999888767799999999999999999998764
No 248
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.72 E-value=1.4e-07 Score=85.27 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~---G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
..+++|||||..|+.+|..++.. |.+|+|+|+.+.+.+. .
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~------------------~------------------- 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG------------------F------------------- 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc------------------c-------------------
Confidence 46899999999999999877654 9999999988754110 0
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.. --+..+.+.|.+ .|+++++++.|+++..++++...+.+.+++++.+|.||.|+|...
T Consensus 230 ---------------d~----~~~~~l~~~L~~--~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 230 ---------------DS----TLRKELTKQLRA--NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred ---------------CH----HHHHHHHHHHHH--cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 00 011233333332 389999999999998765553456777788899999999999766
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
..
T Consensus 289 n~ 290 (486)
T TIGR01423 289 RT 290 (486)
T ss_pred Cc
Confidence 53
No 249
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.72 E-value=3.7e-08 Score=88.27 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~--~G~~V~vlE~~~~~ 93 (294)
...+|+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 46789999999999999999997 79999999999866
No 250
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.71 E-value=3.3e-08 Score=94.26 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||||+||+++|..|+++|++|+|+|+.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4679999999999999999999999999999997654
No 251
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.71 E-value=4.4e-08 Score=85.65 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~---G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
+|||||||++|+.+|..|.++ +.+|+|+|+.+...-... .+ ..+. |
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~----~~---~~~~--g---------------------- 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM----LP---GMIA--G---------------------- 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch----hh---HHHh--e----------------------
Confidence 489999999999999999744 689999998875311100 00 0000 0
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHH---HHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLE---TLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.....++.. .+.+. .+++++.+ +|+++..+++. |.+.+|+++.+|.+|+|+|+.
T Consensus 50 ------------------~~~~~~~~~~~~~~~~~-~gv~~~~~-~v~~id~~~~~---V~~~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 50 ------------------HYSLDEIRIDLRRLARQ-AGARFVIA-EATGIDPDRRK---VLLANRPPLSYDVLSLDVGST 106 (364)
T ss_pred ------------------eCCHHHhcccHHHHHHh-cCCEEEEE-EEEEEecccCE---EEECCCCcccccEEEEccCCC
Confidence 001111111 11111 27888765 78888776543 778888889999999999986
Q ss_pred cH
Q 022652 214 SP 215 (294)
Q Consensus 214 S~ 215 (294)
..
T Consensus 107 ~~ 108 (364)
T TIGR03169 107 TP 108 (364)
T ss_pred CC
Confidence 64
No 252
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.71 E-value=1.5e-07 Score=85.07 Aligned_cols=100 Identities=18% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.+..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~---------------------------------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE---------------------------------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc----------------------------------------
Confidence 3589999999999999999999999999999877541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEec--CC--CEEEcCEEEecCCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIVIGCDGIR 213 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G~~ 213 (294)
.. -....+.+.|.+ .|++++++++|+++..+++. +.+.+. +| +++.+|.||.|.|..
T Consensus 212 ------------d~----~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 212 ------------DA----EVSKEIAKQYKK--LGVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred ------------CH----HHHHHHHHHHHH--CCCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCcc
Confidence 00 011223333333 28999999999999866544 334443 55 369999999999987
Q ss_pred cHh
Q 022652 214 SPI 216 (294)
Q Consensus 214 S~~ 216 (294)
...
T Consensus 273 pn~ 275 (466)
T PRK07818 273 PRV 275 (466)
T ss_pred cCC
Confidence 654
No 253
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.71 E-value=7.5e-08 Score=84.59 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=66.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+|+|||||+||+.+|..|.+. ..+|+|+++.+........+ . ..+. +
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l--~----~~~~--~---------------------- 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDL--S----HVFS--Q---------------------- 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcC--c----HHHh--C----------------------
Confidence 5899999999999999999886 45899999987531110000 0 0000 0
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHH----HHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILL----ETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
.....++. +.+.+. .+++++.+++|+++..+... |.+ ++..+.+|.||+|+|.
T Consensus 53 ------------------~~~~~~~~~~~~~~~~~~-~gv~~~~~~~V~~id~~~~~---v~~-~~~~~~yd~LVlATG~ 109 (377)
T PRK04965 53 ------------------GQRADDLTRQSAGEFAEQ-FNLRLFPHTWVTDIDAEAQV---VKS-QGNQWQYDKLVLATGA 109 (377)
T ss_pred ------------------CCCHHHhhcCCHHHHHHh-CCCEEECCCEEEEEECCCCE---EEE-CCeEEeCCEEEECCCC
Confidence 00111111 112222 27899999999999765432 444 4567999999999998
Q ss_pred CcH
Q 022652 213 RSP 215 (294)
Q Consensus 213 ~S~ 215 (294)
...
T Consensus 110 ~~~ 112 (377)
T PRK04965 110 SAF 112 (377)
T ss_pred CCC
Confidence 654
No 254
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.70 E-value=3.1e-08 Score=96.48 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||||+|||++|..|+++|++|+|+|+.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998755
No 255
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.70 E-value=3.8e-08 Score=88.60 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...++|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 34679999999999999999999999999999998865
No 256
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.69 E-value=2.5e-07 Score=86.01 Aligned_cols=43 Identities=30% Similarity=0.609 Sum_probs=35.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC-CCCCcCceEE
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLT 101 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~-~~~~~g~~~~ 101 (294)
.+|||+|||||++|..+|..++++|.+|+|+|++. .+ +|.+..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~l--GGtCvn 158 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSI--GGTCVN 158 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc--ccceeE
Confidence 36899999999999999999999999999999753 23 454443
No 257
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.69 E-value=2e-07 Score=82.24 Aligned_cols=55 Identities=18% Similarity=0.066 Sum_probs=40.9
Q ss_pred HHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCC--EEEcCEEEecCCCCc
Q 022652 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIRS 214 (294)
Q Consensus 160 ~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~S 214 (294)
++.+.|.+.+ .|++++.+++|++++.+++++..+...+++ .+++|.||+|+|.+.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 4556665555 489999999999999877665444444453 589999999999864
No 258
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.68 E-value=1.8e-07 Score=84.44 Aligned_cols=100 Identities=21% Similarity=0.335 Sum_probs=71.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+....
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 205 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE---------------------------------------- 205 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc----------------------------------------
Confidence 3689999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEec---CCCEEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~ad~vV~A~G~~S 214 (294)
.. -....+.+.|.+ .+++++++++|+++..+++. ..+.+. +++++.+|.||.|+|...
T Consensus 206 ------------d~----~~~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 206 ------------EP----EISAAVEEALAE--EGIEVVTSAQVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred ------------CH----HHHHHHHHHHHH--cCCEEEcCcEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 00 001122333322 38999999999999876554 334443 235799999999999765
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
..
T Consensus 267 ~~ 268 (463)
T TIGR02053 267 NT 268 (463)
T ss_pred CC
Confidence 53
No 259
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.68 E-value=9.5e-08 Score=85.20 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.+.+|||||||.+|+.+|..|.+.+++|+|+|+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 4678999999999999999998778999999988754
No 260
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.67 E-value=1e-07 Score=82.12 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=70.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCCCcCceEEEcccH--HHHHHHcCCchhHHhccccccceEEEcC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTSLTLFKNG--WSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~~~~~g~~~~~~~~~--~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
.+|+++||.||++|++|..|...+ +++..+|+.+....... +-+.... ..+|+++-- +.....+++..++...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-mll~~~~~q~~fl~Dlvt---~~~P~s~~sflnYL~~ 77 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-MLLPGARMQVSFLKDLVT---LRDPTSPFSFLNYLHE 77 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-G--SS-B-SS-TTSSSST---TT-TTSTTSHHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-cCCCCCccccccccccCc---CcCCCCcccHHHHHHH
Confidence 579999999999999999999886 89999999886643211 1000000 000000000 0000001111111111
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHH---HhcCCCCceEeCCceeEEEEcCCc---eEEEEec----CCCEEEcC
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETL---ANQLPPESVQFSSELAKIETSGNG---VTILELV----NGTRIYAN 204 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~v~i~~~~~v~~i~~~~~~---~~~v~~~----~g~~~~ad 204 (294)
.+.... +- ........|.++.+.| ++.+ +..++++++|++|...+++ .+.|.+. +++++.|+
T Consensus 78 ~~rl~~---f~----~~~~~~p~R~ef~dYl~Wva~~~-~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 78 HGRLYE---FY----NRGYFFPSRREFNDYLRWVAEQL-DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp TT-HHH---HH----HH--SS-BHHHHHHHHHHHHCCG-TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred cCChhh---hh----hcCCCCCCHHHHHHHHHHHHHhC-CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence 111000 00 0011124566555554 4444 3459999999999987653 4677773 34589999
Q ss_pred EEEecCCCCcHhhhhc
Q 022652 205 IVIGCDGIRSPIAKWI 220 (294)
Q Consensus 205 ~vV~A~G~~S~~~~~~ 220 (294)
.||+|+|....+...+
T Consensus 150 ~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 150 NVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEEE----EE---GGG
T ss_pred eEEECcCCCCCCCcch
Confidence 9999999655554444
No 261
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.67 E-value=2.6e-07 Score=83.41 Aligned_cols=99 Identities=24% Similarity=0.378 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+....
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~---------------------------------------- 213 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGT---------------------------------------- 213 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCC----------------------------------------
Confidence 4689999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEec---C--CCEEEcCEEEecCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---N--GTRIYANIVIGCDGI 212 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~---~--g~~~~ad~vV~A~G~ 212 (294)
.. -.+..+.+.|.+ .+++++++++|++++.+++++ .+.+. + ++++.+|.||.|.|.
T Consensus 214 ------------d~----~~~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 214 ------------DT----ETAKTLQKALTK--QGMKFKLGSKVTGATAGADGV-SLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred ------------CH----HHHHHHHHHHHh--cCCEEEECcEEEEEEEcCCeE-EEEEEEcCCCceeEEEeCEEEEccCC
Confidence 00 011223333333 289999999999998765553 24332 2 347999999999998
Q ss_pred CcH
Q 022652 213 RSP 215 (294)
Q Consensus 213 ~S~ 215 (294)
...
T Consensus 275 ~pn 277 (466)
T PRK06115 275 RPY 277 (466)
T ss_pred ccc
Confidence 754
No 262
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.67 E-value=6.3e-08 Score=86.87 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...++|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34689999999999999999999999999999998755
No 263
>PRK06370 mercuric reductase; Validated
Probab=98.67 E-value=2.5e-07 Score=83.49 Aligned_cols=100 Identities=24% Similarity=0.346 Sum_probs=70.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+...-
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~---------------------------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE---------------------------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc----------------------------------------
Confidence 4689999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEe--cC-CCEEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL--VN-GTRIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~--~~-g~~~~ad~vV~A~G~~S 214 (294)
.. -.+..+.+.|.+ .|++++++++|+++..++++. .+.+ .+ +.++.+|.||.|+|...
T Consensus 211 ------------~~----~~~~~l~~~l~~--~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 211 ------------DE----DVAAAVREILER--EGIDVRLNAECIRVERDGDGI-AVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred ------------CH----HHHHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEECcCCCc
Confidence 00 001122233322 389999999999998766553 2333 23 45799999999999765
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
..
T Consensus 272 n~ 273 (463)
T PRK06370 272 NT 273 (463)
T ss_pred CC
Confidence 53
No 264
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.66 E-value=3e-07 Score=82.67 Aligned_cols=98 Identities=22% Similarity=0.386 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||+.|+.+|..|++.|.+|+++|+.+.+... +. .+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----~d-------------~~------------------- 211 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----LD-------------ED------------------- 211 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----cC-------------HH-------------------
Confidence 458999999999999999999999999999987744100 00 00
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
+ ...+.+ +.+ .+++++++++|+++..++++ +.+.+.+|+++.+|.||.|+|....
T Consensus 212 ------------------~-~~~l~~-~~~--~gI~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 212 ------------------I-SDRFTE-IAK--KKWDIRLGRNVTAVEQDGDG-VTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred ------------------H-HHHHHH-HHh--cCCEEEeCCEEEEEEEcCCe-EEEEEcCCCEEEcCEEEEeeccCcC
Confidence 0 111222 222 27899999999999876655 4477777888999999999997654
No 265
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.66 E-value=2.2e-07 Score=81.50 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=42.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-CcCceEEEcccHHHHH
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVL 110 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-~~g~~~~~~~~~~~~l 110 (294)
...+||+|||||..|.-+|+-.+-+|++|.++|+++... ..+.+..+-..+.+.|
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYL 120 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYL 120 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHH
Confidence 356999999999999999999999999999999998653 2334444444444444
No 266
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=2.7e-07 Score=83.19 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||++|+.+|..|++.|.+|+|+|+.+.+....
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~---------------------------------------- 209 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE---------------------------------------- 209 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc----------------------------------------
Confidence 3589999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC-CEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~S~~ 216 (294)
.. --+..+.+.|.+ .|++++++++|+++..++.. +.+...++ +++.+|.||.|+|.....
T Consensus 210 ------------d~----e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~~~~-v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 210 ------------DE----DIAHILREKLEN--DGVKIFTGAALKGLNSYKKQ-ALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred ------------cH----HHHHHHHHHHHH--CCCEEEECCEEEEEEEcCCE-EEEEECCceEEEEeCEEEEecCCccCC
Confidence 00 001122333332 38999999999999866544 32443322 368999999999987654
No 267
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.65 E-value=1.2e-06 Score=77.18 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=52.8
Q ss_pred eeeeHHHHHHHHHhcCC-CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 154 RAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~~-~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
..++...+...|.+.+. |++++++++|++++.++++ +.|++.+|..+.||.||+|+|.|+.
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 35788999999998874 7899999999999887665 6688888877999999999999985
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.65 E-value=8.4e-08 Score=91.60 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=67.6
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 61 IVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~---G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
|||||||+||+.+|..|.+. +++|+|+|+.+.+..... .++ ..+. |.. .
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~--~L~----~~l~--g~~--------~------------ 52 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI--LLS----SVLQ--GEA--------D------------ 52 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc--ccc----HHHC--CCC--------C------------
Confidence 68999999999999999875 469999999886521100 000 0000 000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.... ..... +.+ +. .+++++++++|+++..+.. .|.+.+|+++.+|.||+|+|....
T Consensus 53 ------------~~~l-~~~~~---~~~-~~-~gv~~~~g~~V~~Id~~~k---~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 53 ------------LDDI-TLNSK---DWY-EK-HGITLYTGETVIQIDTDQK---QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred ------------HHHc-cCCCH---HHH-HH-CCCEEEcCCeEEEEECCCC---EEEECCCcEeeCCEEEECCCCCcC
Confidence 0000 01111 111 11 2889999999999976543 277788888999999999998654
No 269
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.64 E-value=2e-07 Score=84.06 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|+|||||++|+++|..|++.|.+|+|+|+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999975
No 270
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.64 E-value=3.8e-07 Score=82.37 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
.||+|||||++|+.+|..|+++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 489999999999999999999999999999875
No 271
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.64 E-value=3e-07 Score=83.25 Aligned_cols=100 Identities=16% Similarity=0.319 Sum_probs=71.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.... ..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------d~-------------------- 224 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA------------------DE-------------------- 224 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC------------------CH--------------------
Confidence 3589999999999999999999999999999987541100 00
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC--C--CEEEcCEEEecCCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR 213 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~ 213 (294)
-....+.+.|.+ .|++++.+++|+++..++++ +.+.+.+ | +++.+|.||+|+|..
T Consensus 225 ------------------~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 225 ------------------QVAKEAAKAFTK--QGLDIHLGVKIGEIKTGGKG-VSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred ------------------HHHHHHHHHHHH--cCcEEEeCcEEEEEEEcCCE-EEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 001122233322 38999999999999877655 3355543 3 469999999999987
Q ss_pred cHh
Q 022652 214 SPI 216 (294)
Q Consensus 214 S~~ 216 (294)
...
T Consensus 284 p~~ 286 (475)
T PRK06327 284 PNT 286 (475)
T ss_pred cCC
Confidence 653
No 272
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.64 E-value=2.6e-07 Score=82.80 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+++.+.+... .
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~---------------------- 187 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------M---------------------- 187 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------c----------------------
Confidence 358999999999999999999999999999998754100 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.. --...+.+.|.+ .|++++++++|+++.. . .+.+.+|+++.+|.||.|+|...
T Consensus 188 ------------d~----~~~~~l~~~l~~--~gI~i~~~~~v~~i~~--~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 188 ------------DA----DMNQPILDELDK--REIPYRLNEEIDAING--N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred ------------CH----HHHHHHHHHHHh--cCCEEEECCeEEEEeC--C---EEEECCCCEEEeCEEEECcCCCc
Confidence 00 001123333332 2899999999999963 2 26677788899999999999765
No 273
>PTZ00058 glutathione reductase; Provisional
Probab=98.64 E-value=3.8e-07 Score=83.56 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+... +.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~-------------------- 278 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDE-------------------- 278 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCH--------------------
Confidence 468999999999999999999999999999998754100 000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC-CEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~S~ 215 (294)
-....+.+.|.+ .|+++++++.|.++..++++.+.+...++ +++.+|.|+.|+|....
T Consensus 279 ------------------~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 279 ------------------TIINELENDMKK--NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred ------------------HHHHHHHHHHHH--CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 001223333333 38999999999999876543233444444 47999999999997654
No 274
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=3.5e-07 Score=82.06 Aligned_cols=99 Identities=12% Similarity=0.193 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 197 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE---------------------------------------- 197 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc----------------------------------------
Confidence 3589999999999999999999999999999976441100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. -....+.+.|.+ .|++++++++|+++..++++ +.+.+.++ ++.+|.||.|.|.....
T Consensus 198 ------------~~----~~~~~l~~~l~~--~gV~v~~~~~v~~i~~~~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 198 ------------DR----DIADNIATILRD--QGVDIILNAHVERISHHENQ-VQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred ------------CH----HHHHHHHHHHHh--CCCEEEeCCEEEEEEEcCCE-EEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 001122333332 38999999999999876554 44666555 58999999999987653
No 275
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.63 E-value=4.1e-07 Score=82.32 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
+||++|||||++|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 276
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.62 E-value=1.4e-07 Score=82.08 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++|+++|..|++.|++|+++|+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4568999999999999999999999999999998865
No 277
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.62 E-value=1.9e-07 Score=89.46 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~----G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 133 (294)
+.+|||||+|+||+.+|..|.++ +++|+|+++.+.+..... . +...+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~--~-------------L~~~~~------------- 54 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV--H-------------LSSYFS------------- 54 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC--c-------------chHhHc-------------
Confidence 34899999999999999999864 579999999986521110 0 000000
Q ss_pred CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
+.. .... ..... ..+ +. .+++++.+++|+++..+.. .|.+.+|+.+.+|.+|+|+|..
T Consensus 55 --~~~-----------~~~l-~~~~~---~~~-~~-~gI~~~~g~~V~~Id~~~~---~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 55 --HHT-----------AEEL-SLVRE---GFY-EK-HGIKVLVGERAITINRQEK---VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred --CCC-----------HHHc-cCCCH---HHH-Hh-CCCEEEcCCEEEEEeCCCc---EEEECCCcEEECCEEEECCCCC
Confidence 000 0000 00001 111 11 3889999999999876532 2677888889999999999987
Q ss_pred cHh
Q 022652 214 SPI 216 (294)
Q Consensus 214 S~~ 216 (294)
..+
T Consensus 113 p~~ 115 (847)
T PRK14989 113 PWI 115 (847)
T ss_pred cCC
Confidence 543
No 278
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.60 E-value=5.3e-07 Score=80.61 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=70.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.... +
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~-----------------~---------------------- 177 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL-----------------F---------------------- 177 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc-----------------c----------------------
Confidence 3589999999999999999999999999999887441000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
.. -....+.+.|.+ .|++++++++|+++..++ . + +.+.+|+++.+|.||.|+|....
T Consensus 178 ------------~~----~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~~-~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 178 ------------DE----EMNQIVEEELKK--HEINLRLNEEVDSIEGEE-R-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred ------------CH----HHHHHHHHHHHH--cCCEEEeCCEEEEEecCC-C-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 00 001122223322 289999999999997543 2 3 45677888999999999998643
No 279
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.59 E-value=6.3e-07 Score=81.48 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.+++|||||..|+.+|..|++.|.+|+|+++.. +... +
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~------------------~----------------------- 220 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLRG------------------F----------------------- 220 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cccc------------------C-----------------------
Confidence 479999999999999999999999999998642 2000 0
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. -....+.+.|.+ .|++++.++.+++++..++. ..+.+.+|+++.+|.||.|.|.....
T Consensus 221 -----------d~----~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 221 -----------DR----QCSEKVVEYMKE--QGTLFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred -----------CH----HHHHHHHHHHHH--cCCEEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 00 011223333332 28999999999999876554 44777788889999999999987653
No 280
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=4.8e-07 Score=81.77 Aligned_cols=99 Identities=15% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+.-
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~---------------------------------------- 213 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA---------------------------------------- 213 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcC----------------------------------------
Confidence 3589999999999999999999999999999987541100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC--C--CEEEcCEEEecCCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR 213 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~ 213 (294)
.. -.+..+.+.|.+ .++++++++|++++.++++ +.+.+.+ + +++.+|.||.|.|..
T Consensus 214 ------------d~----~~~~~~~~~l~~---~v~i~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 214 ------------DK----DIVKVFTKRIKK---QFNIMLETKVTAVEAKEDG-IYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred ------------CH----HHHHHHHHHHhh---ceEEEcCCEEEEEEEcCCE-EEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 00 001122333322 2689999999999876665 3355543 2 369999999999987
Q ss_pred cHh
Q 022652 214 SPI 216 (294)
Q Consensus 214 S~~ 216 (294)
...
T Consensus 274 pn~ 276 (471)
T PRK06467 274 PNG 276 (471)
T ss_pred ccC
Confidence 654
No 281
>PLN02546 glutathione reductase
Probab=98.58 E-value=5.4e-07 Score=82.61 Aligned_cols=101 Identities=21% Similarity=0.168 Sum_probs=71.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+... +.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------~d~-------------------- 293 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------FDE-------------------- 293 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------cCH--------------------
Confidence 458999999999999999999999999999988754110 000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
-.+..+.+.|.+ .|++++.+++++++..++++.+.+.+.+++...+|.||.|.|.....
T Consensus 294 ------------------~~~~~l~~~L~~--~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 294 ------------------EVRDFVAEQMSL--RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred ------------------HHHHHHHHHHHH--CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 011122333322 38999999999999875555444666655545589999999987654
No 282
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.58 E-value=2.1e-07 Score=80.79 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=80.0
Q ss_pred ccccceeccchhhhhhhhh----hhc-ccC--CCCcEEEECCCHHHHHHHHHHHHc-------------CCceEEEecCC
Q 022652 32 FCFQTRTRSRSKAIRLSIA----KAE-ADV--RKEDIVIVGAGIAGLATAVSLQRL-------------GIGSLVIEQAD 91 (294)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~----~~~-~~~--~~~dvvIIGaG~aGl~~A~~L~~~-------------G~~V~vlE~~~ 91 (294)
..+.+.+.+++..++.... ... ... ...+++|||||+.|..+|-+|+.+ .++|+|+|+.+
T Consensus 122 ~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p 201 (405)
T COG1252 122 YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201 (405)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence 3455566666655555332 111 111 335799999999999999999853 13899999988
Q ss_pred CCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCC
Q 022652 92 SLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPP 171 (294)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 171 (294)
.+-+... + -.+....+.|. +. |
T Consensus 202 ~ILp~~~------------------~--------------------------------------~l~~~a~~~L~-~~-G 223 (405)
T COG1252 202 RILPMFP------------------P--------------------------------------KLSKYAERALE-KL-G 223 (405)
T ss_pred hhccCCC------------------H--------------------------------------HHHHHHHHHHH-HC-C
Confidence 6521100 0 00112222222 22 9
Q ss_pred CceEeCCceeEEEEcCCceEEEEecCCC-EEEcCEEEecCCCCc-Hhhhh
Q 022652 172 ESVQFSSELAKIETSGNGVTILELVNGT-RIYANIVIGCDGIRS-PIAKW 219 (294)
Q Consensus 172 v~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~~ad~vV~A~G~~S-~~~~~ 219 (294)
+++++++.|++++.+ + |.+++|+ .+.++.+|.|+|... ++-+.
T Consensus 224 V~v~l~~~Vt~v~~~--~---v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 224 VEVLLGTPVTEVTPD--G---VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CEEEcCCceEEECCC--c---EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 999999999999643 4 6777776 499999999999864 34444
No 283
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.58 E-value=1.5e-07 Score=88.47 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4679999999999999999999999999999998765
No 284
>PRK07208 hypothetical protein; Provisional
Probab=98.56 E-value=1.2e-07 Score=86.11 Aligned_cols=38 Identities=37% Similarity=0.534 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
...||+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 56799999999999999999999999999999998764
No 285
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.55 E-value=6.4e-07 Score=79.90 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------cCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccc
Q 022652 59 EDIVIVGAGIAGLATAVSLQR--------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL 124 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~--------------~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~ 124 (294)
.+|+|||||++|+.+|..|+. .|.+|+|+|+.+.+...-
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~--------------------------- 226 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSF--------------------------- 226 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccC---------------------------
Confidence 489999999999999999985 378999999887541100
Q ss_pred cccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcC
Q 022652 125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYAN 204 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad 204 (294)
+. --+..+.+.|.+ .|++++++++|+++.. +. |.+++|+++.+|
T Consensus 227 -------------------------~~----~~~~~~~~~L~~--~gV~v~~~~~v~~v~~--~~---v~~~~g~~i~~d 270 (424)
T PTZ00318 227 -------------------------DQ----ALRKYGQRRLRR--LGVDIRTKTAVKEVLD--KE---VVLKDGEVIPTG 270 (424)
T ss_pred -------------------------CH----HHHHHHHHHHHH--CCCEEEeCCeEEEEeC--CE---EEECCCCEEEcc
Confidence 00 012233344433 3899999999999863 33 667889899999
Q ss_pred EEEecCCCCc
Q 022652 205 IVIGCDGIRS 214 (294)
Q Consensus 205 ~vV~A~G~~S 214 (294)
.+|.|.|...
T Consensus 271 ~vi~~~G~~~ 280 (424)
T PTZ00318 271 LVVWSTGVGP 280 (424)
T ss_pred EEEEccCCCC
Confidence 9999999654
No 286
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.55 E-value=1.2e-07 Score=85.54 Aligned_cols=37 Identities=41% Similarity=0.586 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998865
No 287
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.55 E-value=6.3e-07 Score=79.55 Aligned_cols=98 Identities=30% Similarity=0.380 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||+|++|+.+|..|+++|++|+++|+.+.+......
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence 578999999999999999999999999999999976211100
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEE--EEecCCCEEEcCEEEecCCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTI--LELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~--v~~~~g~~~~ad~vV~A~G~~ 213 (294)
..+.+.+.+.+ .++++++++++.++....+.... +...++..+.+|.++.+.|..
T Consensus 178 ---------------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 178 ---------------------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred ---------------------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 11222222222 26899999999999987665332 567778889999999999987
Q ss_pred c
Q 022652 214 S 214 (294)
Q Consensus 214 S 214 (294)
.
T Consensus 237 p 237 (415)
T COG0446 237 P 237 (415)
T ss_pred c
Confidence 6
No 288
>PRK14694 putative mercuric reductase; Provisional
Probab=98.54 E-value=1.1e-06 Score=79.33 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||+|++|+.+|..|++.|.+|+++++.......
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~----------------------------------------- 216 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE----------------------------------------- 216 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCC-----------------------------------------
Confidence 358999999999999999999999999999874321000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. -....+.+.|.+ .|++++++++|+++..+++. +.+.+.++ ++.+|.||.|+|.....
T Consensus 217 ------------~~----~~~~~l~~~l~~--~GI~v~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 217 ------------DP----AVGEAIEAAFRR--EGIEVLKQTQASEVDYNGRE-FILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred ------------CH----HHHHHHHHHHHh--CCCEEEeCCEEEEEEEcCCE-EEEEECCC-EEEeCEEEEccCCCCCc
Confidence 00 001122333332 38999999999999876554 33565554 69999999999987654
No 289
>PRK14727 putative mercuric reductase; Provisional
Probab=98.53 E-value=1e-06 Score=79.82 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+++.......
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~----------------------------------------- 226 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFRE----------------------------------------- 226 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcc-----------------------------------------
Confidence 358999999999999999999999999999875311000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. .....+.+.|.+ .|++++++++|+++..++++ +.+.+.++ ++.+|.||.|.|.....
T Consensus 227 ------------d~----~~~~~l~~~L~~--~GV~i~~~~~V~~i~~~~~~-~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 227 ------------DP----LLGETLTACFEK--EGIEVLNNTQASLVEHDDNG-FVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred ------------hH----HHHHHHHHHHHh--CCCEEEcCcEEEEEEEeCCE-EEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 00 001122233322 38999999999999876655 44666655 59999999999998754
No 290
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.52 E-value=1e-06 Score=79.13 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.... +
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~----~----------------------------------- 189 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDS----F----------------------------------- 189 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchh----c-----------------------------------
Confidence 4689999999999999999999999999999876431000 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.. --...+.+.|.+ .|++++++++|+++..+ ++...+.+.+ .++.+|.||.|+|...
T Consensus 190 ------------~~----~~~~~l~~~l~~--~gI~v~~~~~v~~i~~~-~~~~~v~~~~-~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 190 ------------DK----EITDVMEEELRE--NGVELHLNEFVKSLIGE-DKVEGVVTDK-GEYEADVVIVATGVKP 246 (444)
T ss_pred ------------CH----HHHHHHHHHHHH--CCCEEEcCCEEEEEecC-CcEEEEEeCC-CEEEcCEEEECcCCCc
Confidence 00 001122222222 38999999999999643 3334455544 4699999999999864
No 291
>PRK10262 thioredoxin reductase; Provisional
Probab=98.52 E-value=1.1e-06 Score=75.41 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||+|..|+.+|..|++.|.+|+++++.+....
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------ 183 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------ 183 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------
Confidence 45899999999999999999999999999998764310
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCC------CEEEcCEEEec
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG------TRIYANIVIGC 209 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g------~~~~ad~vV~A 209 (294)
+ ..+.+.+.+.+ .+++++.++.++++..++.+...|++.++ +++.+|.||.|
T Consensus 184 -------------------~-~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a 243 (321)
T PRK10262 184 -------------------E-KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVA 243 (321)
T ss_pred -------------------C-HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEE
Confidence 0 01112222222 27899999999999866544434555432 36999999999
Q ss_pred CCCCcH
Q 022652 210 DGIRSP 215 (294)
Q Consensus 210 ~G~~S~ 215 (294)
.|....
T Consensus 244 ~G~~p~ 249 (321)
T PRK10262 244 IGHSPN 249 (321)
T ss_pred eCCccC
Confidence 997654
No 292
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.52 E-value=9.2e-07 Score=80.10 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=69.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
.+++|||||..|+.+|..|++.|.+|+|+++.. +.+ . .
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~-~-----------------~----------------------- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLR-G-----------------F----------------------- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-ccc-c-----------------c-----------------------
Confidence 479999999999999999999999999998742 210 0 0
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC---CEEEcCEEEecCCCCcH
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRSP 215 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~S~ 215 (294)
.. -....+.+.|.+ .|+++++++.++++...+++ ..+++.++ +++.+|.||.|.|....
T Consensus 219 -----------d~----~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 219 -----------DQ----DCANKVGEHMEE--HGVKFKRQFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred -----------CH----HHHHHHHHHHHH--cCCEEEeCceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 00 011223333332 28999999999999876554 33666554 37999999999997654
Q ss_pred h
Q 022652 216 I 216 (294)
Q Consensus 216 ~ 216 (294)
.
T Consensus 281 ~ 281 (484)
T TIGR01438 281 T 281 (484)
T ss_pred C
Confidence 3
No 293
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=2.9e-07 Score=80.25 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--C-ceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLG--I-GSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G--~-~V~vlE~~~~~ 93 (294)
+++|+|||+|++|+.+|.+|.+.- - .|.|+|+....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 368999999999999999999861 1 39999999876
No 294
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.52 E-value=9e-07 Score=80.89 Aligned_cols=94 Identities=24% Similarity=0.394 Sum_probs=69.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------ 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------ 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------------------------------------------
Confidence 45899999999999999999999999999997764310
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC---C--CEEEcCEEEecCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGI 212 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~ 212 (294)
...+.+.|. ...|+++++++.++++..+++++..|.+.+ + +++.+|.||.|.|.
T Consensus 390 --------------------~~~l~~~l~-~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 390 --------------------DKVLQDKLK-SLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred --------------------hHHHHHHHh-cCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 011222222 224899999999999986655544465543 2 36899999999997
Q ss_pred Cc
Q 022652 213 RS 214 (294)
Q Consensus 213 ~S 214 (294)
..
T Consensus 449 ~P 450 (515)
T TIGR03140 449 VP 450 (515)
T ss_pred cC
Confidence 54
No 295
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.52 E-value=1.6e-07 Score=87.92 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998866
No 296
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.51 E-value=2.6e-07 Score=83.31 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4579999999999999999999999999999999865
No 297
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=5e-07 Score=78.47 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
.+.+|||||||.+|+.+|..|.++- .+|+++|+++...-.. +| .++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------lL------~eva-------------- 50 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------LL------YEVA-------------- 50 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------hh------hhhh--------------
Confidence 3568999999999999999999974 8999999998531000 00 0000
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHH---HHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILL---ETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
...++..++. +.+.+...++++.. .+|++|..+... |.++++..+.+|.+|+|.|
T Consensus 51 ------------------~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~ID~~~k~---V~~~~~~~i~YD~LVvalG 108 (405)
T COG1252 51 ------------------TGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDIDRDAKK---VTLADLGEISYDYLVVALG 108 (405)
T ss_pred ------------------cCCCChhheeccHHHHhcccCceEEEE-EEEEEEcccCCE---EEeCCCccccccEEEEecC
Confidence 0001111111 11222222355554 588899877655 6777766799999999999
Q ss_pred CCcH
Q 022652 212 IRSP 215 (294)
Q Consensus 212 ~~S~ 215 (294)
+...
T Consensus 109 s~~~ 112 (405)
T COG1252 109 SETN 112 (405)
T ss_pred CcCC
Confidence 8664
No 298
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.7e-07 Score=82.44 Aligned_cols=37 Identities=38% Similarity=0.516 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~ 95 (294)
.+|+|+|||+|||+||++|+++|++|+|+|+++.+++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 3799999999999999999999999999999998753
No 299
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.48 E-value=2e-07 Score=84.90 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
.||+|||||++||++|..|+++|++|+|+|++..++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999998763
No 300
>PRK13748 putative mercuric reductase; Provisional
Probab=98.47 E-value=1.7e-06 Score=80.05 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+++|||||..|+.+|..|++.|.+|+|+++.......
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------------------------------- 308 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE----------------------------------------- 308 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccccc-----------------------------------------
Confidence 358999999999999999999999999999975321000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
.. -....+.+.|.+ .|++++++++|++++.+++. +.+.+.++ ++.+|.||.|.|.....
T Consensus 309 ------------d~----~~~~~l~~~l~~--~gI~i~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 ------------DP----AIGEAVTAAFRA--EGIEVLEHTQASQVAHVDGE-FVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ------------CH----HHHHHHHHHHHH--CCCEEEcCCEEEEEEecCCE-EEEEecCC-eEEeCEEEEccCCCcCC
Confidence 00 001223333322 28999999999999876554 44666555 59999999999986553
No 301
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.47 E-value=1.6e-06 Score=77.90 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+||++|||+|++|..+|. ++.|.+|+|+|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 589999999999988864 45799999999854
No 302
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.47 E-value=2.2e-06 Score=74.44 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=85.6
Q ss_pred ccccceeccchhhhhhhhhhhcccCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHH
Q 022652 32 FCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111 (294)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~ 111 (294)
+.+.++..+++..+..... ....|+++|+|..|+.+|..|...+++|+++++.+.+-..-
T Consensus 193 nv~~ireieda~~l~~~~~------~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~l-------------- 252 (478)
T KOG1336|consen 193 NVFYLREIEDANRLVAAIQ------LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRL-------------- 252 (478)
T ss_pred ceeeeccHHHHHHHHHHhc------cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhh--------------
Confidence 3444455555543332222 35679999999999999999999999999999988652100
Q ss_pred HcCCchhHHhccccccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCc-e
Q 022652 112 ALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-V 190 (294)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~-~ 190 (294)
+..--+..+...+.+ .+++++.++.+.+++.++++ +
T Consensus 253 -----------------------------------------f~~~i~~~~~~y~e~--kgVk~~~~t~~s~l~~~~~Gev 289 (478)
T KOG1336|consen 253 -----------------------------------------FGPSIGQFYEDYYEN--KGVKFYLGTVVSSLEGNSDGEV 289 (478)
T ss_pred -----------------------------------------hhHHHHHHHHHHHHh--cCeEEEEecceeecccCCCCcE
Confidence 000111222233322 38999999999999988754 5
Q ss_pred EEEEecCCCEEEcCEEEecCCCCcH
Q 022652 191 TILELVNGTRIYANIVIGCDGIRSP 215 (294)
Q Consensus 191 ~~v~~~~g~~~~ad~vV~A~G~~S~ 215 (294)
..|.+.++.++.||+||.+.|+...
T Consensus 290 ~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 290 SEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred EEEEeccCCEeccCeEEEeeccccc
Confidence 6899999999999999999998654
No 303
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.46 E-value=2.4e-06 Score=77.19 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=68.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+++|+.+.+... .
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~---------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------E---------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------h----------------------
Confidence 468999999999999999999999999999998754110 0
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCC--CEEEcCEEEecCCCCcH
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRSP 215 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~S~ 215 (294)
.. -....+.+.|.+ . ++++++++|++++.+++..+.++..++ +++.+|.||.|.|....
T Consensus 209 ------------d~----~~~~~~~~~l~~--~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 209 ------------DP----EVSKQAQKILSK--E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred ------------hH----HHHHHHHHHHhh--c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 00 001122222222 2 789999999999876542233433333 46999999999998654
Q ss_pred h
Q 022652 216 I 216 (294)
Q Consensus 216 ~ 216 (294)
.
T Consensus 270 ~ 270 (460)
T PRK06292 270 T 270 (460)
T ss_pred C
Confidence 3
No 304
>PRK07846 mycothione reductase; Reviewed
Probab=98.45 E-value=9.7e-07 Score=79.31 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+||++|||||++|..+|.. +.|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999864
No 305
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.44 E-value=3.3e-07 Score=79.61 Aligned_cols=36 Identities=36% Similarity=0.563 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
++||+|||||++|+++|..|++.|.+|+|+|+++.+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 369999999999999999999999999999998755
No 306
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.44 E-value=1.9e-06 Score=80.29 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+..|..|++.|.+|+|+|+.+.+... +..+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~d~e------------------- 354 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------LDAD------------------- 354 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------CCHH-------------------
Confidence 357999999999999999999999999999998755210 0000
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCc-eEEEEecC-------C--------CEE
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-VTILELVN-------G--------TRI 201 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~-~~~v~~~~-------g--------~~~ 201 (294)
....+.+.+.+. .|++++.++.|++++.++++ .+.+.+.+ + +++
T Consensus 355 -------------------is~~l~~~ll~~-~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i 414 (659)
T PTZ00153 355 -------------------VAKYFERVFLKS-KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKET 414 (659)
T ss_pred -------------------HHHHHHHHHhhc-CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEE
Confidence 011122222221 38999999999999876543 13344321 1 269
Q ss_pred EcCEEEecCCCCcHh
Q 022652 202 YANIVIGCDGIRSPI 216 (294)
Q Consensus 202 ~ad~vV~A~G~~S~~ 216 (294)
.+|.||.|+|.....
T Consensus 415 ~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 415 YVDSCLVATGRKPNT 429 (659)
T ss_pred EcCEEEEEECcccCC
Confidence 999999999987543
No 307
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.43 E-value=4.8e-07 Score=84.70 Aligned_cols=37 Identities=35% Similarity=0.569 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4688999999999999999999999999999999865
No 308
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.42 E-value=5.9e-07 Score=81.37 Aligned_cols=37 Identities=38% Similarity=0.534 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3479999999999999999999999999999998865
No 309
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.41 E-value=5.5e-07 Score=81.34 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=46.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCc--------CceE--------EEcccHHHHHHHcCCchhH
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--------GTSL--------TLFKNGWSVLDALGVGSDL 119 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~--------g~~~--------~~~~~~~~~l~~lg~~~~~ 119 (294)
+|+|||||++|+++|+.|+++|++|+|+|+.+.++.. |..+ ...++..++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 5899999999999999999999999999999876421 1111 1134567788889886554
No 310
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3e-06 Score=66.42 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC--CCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS--LRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~--~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 135 (294)
+.+|+|||.|||+-.+|++++++.++-+|+|-.-. ..++|+-....
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT-------------------------------- 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT-------------------------------- 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee--------------------------------
Confidence 45899999999999999999999999999996542 22233211100
Q ss_pred CcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.+..+ +-+...+.-.+|++.+.+.. -|.+|+.. .|.++.....- ..+.+ +.+.+.||.||.|+|+.
T Consensus 56 --~veNf-------PGFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskp-F~l~t-d~~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 56 --DVENF-------PGFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKP-FKLWT-DARPVTADAVILATGAS 123 (322)
T ss_pred --ccccC-------CCCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCC-eEEEe-cCCceeeeeEEEecccc
Confidence 00000 11112255567777777665 25566543 56666655443 43444 44569999999999975
Q ss_pred cH
Q 022652 214 SP 215 (294)
Q Consensus 214 S~ 215 (294)
..
T Consensus 124 Ak 125 (322)
T KOG0404|consen 124 AK 125 (322)
T ss_pred ee
Confidence 53
No 311
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.39 E-value=7.6e-07 Score=77.30 Aligned_cols=36 Identities=25% Similarity=0.678 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+++|||||+||+++|+.|++.|++|.|+||.+.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 468999999999999999999999999999999988
No 312
>PLN02487 zeta-carotene desaturase
Probab=98.38 E-value=8.3e-07 Score=81.28 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=49.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC--------cCc----eEE----EcccHHHHHHHcCCchhHH
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--------GGT----SLT----LFKNGWSVLDALGVGSDLR 120 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~--------~g~----~~~----~~~~~~~~l~~lg~~~~~~ 120 (294)
+.+|+|||||++|+++|+.|+++|++|+|+|+.+.++. .|. +.+ ..++..++++++|+.+++.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 35999999999999999999999999999999987642 121 111 2356788999999876653
No 313
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.36 E-value=9.4e-07 Score=81.71 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999999865
No 314
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.35 E-value=2e-06 Score=74.17 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=50.2
Q ss_pred HHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhhhhc
Q 022652 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (294)
Q Consensus 160 ~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~ 220 (294)
.+..++++.+ .|.+|.+++.|++|..+++.+.+|.++||+++.++.||--++.|-+.-+.+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 4445555554 388999999999999988777899999999999999998888888776655
No 315
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.35 E-value=5.3e-06 Score=75.92 Aligned_cols=94 Identities=21% Similarity=0.341 Sum_probs=69.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||..|+.+|..|++.|.+|+|+++.+.+..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------ 388 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------ 388 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------
Confidence 45899999999999999999999999999998874410
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEec---CC--CEEEcCEEEecCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGI 212 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~ 212 (294)
...+.+.| +...|+++++++.++++..+++.+..+.+. ++ +++.+|.|+.|.|.
T Consensus 389 --------------------~~~l~~~l-~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 389 --------------------DQVLQDKL-RSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred --------------------cHHHHHHH-hcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 00112222 222489999999999998765554445554 23 25899999999998
Q ss_pred Cc
Q 022652 213 RS 214 (294)
Q Consensus 213 ~S 214 (294)
..
T Consensus 448 ~p 449 (517)
T PRK15317 448 VP 449 (517)
T ss_pred cc
Confidence 65
No 316
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.35 E-value=6.5e-06 Score=69.84 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=67.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||+|..|+.+|..|++.|.+|+++++.+....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------------------------ 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------------------------ 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------------------------------------------
Confidence 45899999999999999999999999999998763310
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEec---CC--CEEEcCEEEecCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGI 212 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~ 212 (294)
...+.+.|.+ ..+++++++++++++..++ ++..+.+. ++ +++.+|.||.|+|.
T Consensus 179 --------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 179 --------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred --------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 0112233322 2378999999999998654 33334432 23 47999999999996
Q ss_pred CcH
Q 022652 213 RSP 215 (294)
Q Consensus 213 ~S~ 215 (294)
...
T Consensus 237 ~~~ 239 (300)
T TIGR01292 237 EPN 239 (300)
T ss_pred CCC
Confidence 543
No 317
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.32 E-value=1.6e-06 Score=79.14 Aligned_cols=122 Identities=26% Similarity=0.308 Sum_probs=86.6
Q ss_pred CCCccccceeccchhhhhhhhhhhcccCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHH
Q 022652 29 SSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWS 108 (294)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~ 108 (294)
...-++..++..+.-++.+... .....+|||||.-|+.+|..|...|++|.|++-.+.+.
T Consensus 122 ~~~~v~~~R~i~D~~am~~~ar------~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------- 181 (793)
T COG1251 122 DLPGVFVYRTIDDVEAMLDCAR------NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------- 181 (793)
T ss_pred CCCCeeEEecHHHHHHHHHHHh------ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH--------------
Confidence 4445566777777766665533 23458999999999999999999999999998777431
Q ss_pred HHHHcCCchhHHhccccccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCC
Q 022652 109 VLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN 188 (294)
Q Consensus 109 ~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~ 188 (294)
-+ ++. -.-..+++..++.. |+++++++..+++.. .+
T Consensus 182 -er------QLD-----------------------------------~~ag~lL~~~le~~-Gi~~~l~~~t~ei~g-~~ 217 (793)
T COG1251 182 -ER------QLD-----------------------------------RTAGRLLRRKLEDL-GIKVLLEKNTEEIVG-ED 217 (793)
T ss_pred -HH------hhh-----------------------------------hHHHHHHHHHHHhh-cceeecccchhhhhc-Cc
Confidence 00 000 01123333333333 889999888888776 44
Q ss_pred ceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 189 GVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 189 ~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.+..++++||..+.+|.||.|+|..-
T Consensus 218 ~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 218 KVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred ceeeEeecCCCcccceeEEEeccccc
Confidence 55679999999999999999999864
No 318
>PRK13984 putative oxidoreductase; Provisional
Probab=98.31 E-value=1e-06 Score=82.28 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
....+|+|||+|++|+++|..|+++|++|+|+|+.+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34678999999999999999999999999999998865
No 319
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=1e-06 Score=72.77 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
++|++|||||++|+.+|..|++.|.+|.|+||++.++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 4799999999999999999999999999999999884
No 320
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.27 E-value=5.4e-07 Score=69.96 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLR 94 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~ 94 (294)
.-||+|||+|-+||++||..+++ .++|.|+|..-.++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 45999999999999999999965 68999999987664
No 321
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.26 E-value=1.2e-05 Score=72.29 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999876
No 322
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.24 E-value=9.2e-07 Score=75.04 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~ 92 (294)
||+||||+|.+|+.+|..|++.| .+|+|||++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999997 69999999865
No 323
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.20 E-value=1.4e-05 Score=69.87 Aligned_cols=93 Identities=27% Similarity=0.403 Sum_probs=63.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----cC--CceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEE
Q 022652 58 KEDIVIVGAGIAGLATAVSLQR----LG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV 131 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~----~G--~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 131 (294)
..+|+|||||++|+.+|..|++ +| .+|+|+ ..+.+... +
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-----~----------------------------- 189 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-----F----------------------------- 189 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-----C-----------------------------
Confidence 3589999999999999999985 35 478888 33221000 0
Q ss_pred EcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCC
Q 022652 132 KSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (294)
.. -.+..+.+.|.+ .+++++.+++|+++.. + .+.+.+|+++.+|.||.|.|
T Consensus 190 ------------------~~----~~~~~~~~~l~~--~gV~v~~~~~v~~i~~--~---~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 190 ------------------PA----KVRRLVLRLLAR--RGIEVHEGAPVTRGPD--G---ALILADGRTLPADAILWATG 240 (364)
T ss_pred ------------------CH----HHHHHHHHHHHH--CCCEEEeCCeeEEEcC--C---eEEeCCCCEEecCEEEEccC
Confidence 00 011223333333 2899999999998853 2 26777888999999999999
Q ss_pred CCc
Q 022652 212 IRS 214 (294)
Q Consensus 212 ~~S 214 (294)
...
T Consensus 241 ~~p 243 (364)
T TIGR03169 241 ARA 243 (364)
T ss_pred CCh
Confidence 765
No 324
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.16 E-value=1.3e-05 Score=72.23 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
..+|+|||||..|+.+|..|++.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999998 899999865
No 325
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.15 E-value=2.5e-06 Score=81.36 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
....+|+||||||||+++|++|+++|++|+|+|+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 356799999999999999999999999999999853
No 326
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=2.8e-05 Score=67.69 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCc-eEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~ 91 (294)
.+|+|||+|..|+.+|..|++.|.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999997 99998765
No 327
>PLN02529 lysine-specific histone demethylase 1
Probab=98.13 E-value=4.7e-06 Score=78.28 Aligned_cols=37 Identities=38% Similarity=0.619 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
...+|+|||||++|+++|..|+++|++|+|+|+++.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 4679999999999999999999999999999998765
No 328
>PRK12831 putative oxidoreductase; Provisional
Probab=98.11 E-value=2.7e-05 Score=70.29 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|||||..|+.+|..|.+.|.+|+++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998765
No 329
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.11 E-value=3.9e-06 Score=69.59 Aligned_cols=36 Identities=31% Similarity=0.601 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+++||+|||||+||++||+.|+++|.++.|+-++..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 368999999999999999999999999999998753
No 330
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.10 E-value=4.7e-06 Score=78.76 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
...+|+|||||++|+++|+.|++.|++|+|+|+...++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 46789999999999999999999999999999987663
No 331
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.10 E-value=8.3e-06 Score=70.34 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCCCCCcCce----EEEcccHHHHHHHcCCchhHHhccccccce
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTS----LTLFKNGWSVLDALGVGSDLRSQFLEIKGM 129 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~~~~~g~~----~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~ 129 (294)
....+|+|||||.++..++..|.+.+- +|+++=|+........+ ..+.|...+.+..+ .++..........
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l--~~~~R~~~l~~~~- 264 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL--PDEERRELLREQR- 264 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHHTG-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC--CHHHHHHHHHHhH-
Confidence 356789999999999999999999875 89999888754321111 01222222222222 1111111000000
Q ss_pred EEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcC--------CCCceEeCCceeEEEEcCCceEEEEecCC---
Q 022652 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--------PPESVQFSSELAKIETSGNGVTILELVNG--- 198 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------~~v~i~~~~~v~~i~~~~~~~~~v~~~~g--- 198 (294)
......++. ++.+.|.+.+ ..++++.+++|++++.++++.+.+.+.+.
T Consensus 265 --------------------~~ny~~i~~-~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~ 323 (341)
T PF13434_consen 265 --------------------HTNYGGIDP-DLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTG 323 (341)
T ss_dssp --------------------GGTSSEB-H-HHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT-
T ss_pred --------------------hhcCCCCCH-HHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCC
Confidence 000111222 2222221111 24788999999999998864466777652
Q ss_pred --CEEEcCEEEecCCC
Q 022652 199 --TRIYANIVIGCDGI 212 (294)
Q Consensus 199 --~~~~ad~vV~A~G~ 212 (294)
.++.+|.||.|||.
T Consensus 324 ~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 324 EEETLEVDAVILATGY 339 (341)
T ss_dssp -EEEEEESEEEE---E
T ss_pred CeEEEecCEEEEcCCc
Confidence 36899999999994
No 332
>PRK02106 choline dehydrogenase; Validated
Probab=98.08 E-value=4.2e-06 Score=77.41 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~-~G~~V~vlE~~~ 91 (294)
..+|+||||+|.+|+.+|..|++ .|++|+|||+++
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 56899999999999999999999 799999999985
No 333
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.08 E-value=7.8e-06 Score=70.15 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=46.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCce--EEEecCCCCCCcCce------E--EE-----------cccHHHHHHHcCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGS--LVIEQADSLRTGGTS------L--TL-----------FKNGWSVLDALGV 115 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V--~vlE~~~~~~~~g~~------~--~~-----------~~~~~~~l~~lg~ 115 (294)
...+|+|||||++||++||+|++++-++ +|+|+.+..+..-++ . .. ..+.+.++.++|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 4578999999999999999999998765 559998866321111 1 01 1235678899999
Q ss_pred chhHHh
Q 022652 116 GSDLRS 121 (294)
Q Consensus 116 ~~~~~~ 121 (294)
.+++..
T Consensus 90 ~~e~~~ 95 (491)
T KOG1276|consen 90 EDELQP 95 (491)
T ss_pred cceeee
Confidence 876653
No 334
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.06 E-value=6.8e-06 Score=73.11 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HcCCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQ-RLGIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~-~~G~~V~vlE~~~~~~ 94 (294)
....|+||||||||+.+|.+|+ +.|++|+|+|+.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4568999999999999999765 6799999999999774
No 335
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.04 E-value=4.7e-05 Score=69.82 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=56.3
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEec---CC--CEEEcCEEEecCCCCcH-hhhhcCCCCC
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGIRSP-IAKWIGFSEP 225 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~~S~-~~~~~~~~~~ 225 (294)
..++...+...+++.+ .|++++.+++|+++..+++++++|++. +| .++.|+.||+|+|.|+. +.+.+|...+
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~ 202 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIR 202 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCCc
Confidence 3578899998888777 589999999999999877766556653 34 26899999999999986 5555566544
Q ss_pred c
Q 022652 226 K 226 (294)
Q Consensus 226 ~ 226 (294)
.
T Consensus 203 i 203 (516)
T TIGR03377 203 M 203 (516)
T ss_pred e
Confidence 3
No 336
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.02 E-value=6.6e-06 Score=74.78 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
+||+|||+|++|+.+|+.|+++|++|+|+|++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998764
No 337
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.02 E-value=0.00025 Score=61.19 Aligned_cols=62 Identities=26% Similarity=0.300 Sum_probs=53.0
Q ss_pred eeeeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 154 ~~~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
..++...+...|++.+ .|++++.+++|+++..++++++.|.+.+| ++.||.||+|+|+++..
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 4578899999998887 48999999999999987776666787777 69999999999999874
No 338
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.00 E-value=2.7e-05 Score=69.33 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.3
Q ss_pred CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHhh
Q 022652 171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 171 ~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~ 217 (294)
+.+|+++++|++|+.++++ +.|.+.+|+++.||.||.|.......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGG-VTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSE-EEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccccc-cccccccceEEecceeeecCchhhhhh
Confidence 4589999999999999877 459999999999999999888655543
No 339
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.98 E-value=8.6e-05 Score=68.61 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..+|+|||||..|+.+|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998764
No 340
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=76.43 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||.||+||++|-.|.+.|+-|+|+||.+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 3578999999999999999999999999999999976
No 341
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00059 Score=57.19 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
..+||.+|||||-+||+||.+.+..|.+|.++|--
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 36899999999999999999999999999999964
No 342
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.93 E-value=5.8e-05 Score=68.42 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=34.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSL 93 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~-G~~V~vlE~~~~~ 93 (294)
...||.+|||||-|||.+|..|++. ..+|+|+|++..+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999987 6799999998654
No 343
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.92 E-value=1e-05 Score=66.94 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=65.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CC-ceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~-G~-~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
.++.|+|||||.+|+..|..+.++ |- +|.|+|....---+ -++.+-..++..|+.-+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~sr-------------------- 96 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSR-------------------- 96 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccC-cceEEeccchhhhhhcc--------------------
Confidence 578999999999999999999876 44 89999987632100 01111111111111100
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
+.+++..+........+|+++..+.+. |.+.+|++|.+|++|+|.|..-
T Consensus 97 ----------------------------r~~a~liP~~a~wi~ekv~~f~P~~N~---v~t~gg~eIsYdylviA~Giql 145 (446)
T KOG3851|consen 97 ----------------------------RKQASLIPKGATWIKEKVKEFNPDKNT---VVTRGGEEISYDYLVIAMGIQL 145 (446)
T ss_pred ----------------------------CcccccccCCcHHHHHHHHhcCCCcCe---EEccCCcEEeeeeEeeeeecee
Confidence 000011111111123577888777765 7889999999999999999875
Q ss_pred H
Q 022652 215 P 215 (294)
Q Consensus 215 ~ 215 (294)
.
T Consensus 146 ~ 146 (446)
T KOG3851|consen 146 D 146 (446)
T ss_pred c
Confidence 4
No 344
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.90 E-value=0.00015 Score=65.66 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
..+|+|||||..|+.+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4589999999999999999999986 788776554
No 345
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.87 E-value=8.8e-05 Score=65.60 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
+..|||+|+|-|+.-+.+|..|++.|.+|+.+|+++.-+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 368999999999999999999999999999999998654
No 346
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.87 E-value=4.1e-05 Score=65.63 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC--CcHhhhhcCCC
Q 022652 159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI--RSPIAKWIGFS 223 (294)
Q Consensus 159 ~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~--~S~~~~~~~~~ 223 (294)
..|.++-.++. .|++++-|..|.++...... +.+.+.||.+++.|+||+|.|- ++-+...-|+.
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence 33444433433 48999999999999887766 4489999999999999999996 45555444444
No 347
>PLN03000 amine oxidase
Probab=97.86 E-value=2.4e-05 Score=74.26 Aligned_cols=38 Identities=42% Similarity=0.618 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
...+|+|||||++|+.+|..|++.|++|+|+|++..++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 45899999999999999999999999999999988663
No 348
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.86 E-value=1.4e-05 Score=73.26 Aligned_cols=36 Identities=39% Similarity=0.520 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..++|+||||+|.+|+.+|..|+..|++|+|||++.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 357999999999999999999999999999999985
No 349
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.86 E-value=0.00011 Score=62.95 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=88.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCCCcCceEEEcccH--HHHHHHcCCchhHHhccccccceEEE
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTSLTLFKNG--WSVLDALGVGSDLRSQFLEIKGMAVK 132 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~~~~~g~~~~~~~~~--~~~l~~lg~~~~~~~~~~~~~~~~~~ 132 (294)
...+|++.||-||+-|++|..|...+ +++..+||.+.+......+ +.... ..++++|= .+..-..+++.+++.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv~FlkDLV---Tl~~PTs~ySFLNYL 78 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQVPFLKDLV---TLVDPTSPYSFLNYL 78 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc-cCCccccccchhhhc---cccCCCCchHHHHHH
Confidence 35789999999999999999999875 7899999999876433211 11000 01111110 000001111111111
Q ss_pred cCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCC-CCceEeCCceeEEEEc-CCceEE--EEecCCCEEEcCEEEe
Q 022652 133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETS-GNGVTI--LELVNGTRIYANIVIG 208 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~v~i~~~~~v~~i~~~-~~~~~~--v~~~~g~~~~ad~vV~ 208 (294)
...++...-+ ......+.|.++.+.+...+. --.++++++|++|..- .+.... +.+.++.+++|+.||+
T Consensus 79 ~~h~RLy~Fl-------~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVl 151 (436)
T COG3486 79 HEHGRLYEFL-------NYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVL 151 (436)
T ss_pred HHcchHhhhh-------hhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEE
Confidence 1111111000 112234667766666655442 2468899999977332 233333 6777888899999999
Q ss_pred cCCCCcHhhhhc
Q 022652 209 CDGIRSPIAKWI 220 (294)
Q Consensus 209 A~G~~S~~~~~~ 220 (294)
..|..-.+...+
T Consensus 152 g~G~~P~IP~~f 163 (436)
T COG3486 152 GVGTQPYIPPCF 163 (436)
T ss_pred ccCCCcCCChHH
Confidence 999877665444
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.84 E-value=0.00012 Score=70.09 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc-eEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~ 91 (294)
..+|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99999875
No 351
>PLN02785 Protein HOTHEAD
Probab=97.83 E-value=2.4e-05 Score=72.34 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...||++|||||.+|+.+|..|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 457999999999999999999999 689999999864
No 352
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.82 E-value=0.00015 Score=63.08 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=52.6
Q ss_pred eeHHHHHHHHHhcC--CCCceEeCCceeEEEEcCCceEEEEecCC-CEEEcCEEEecCCCCc-----------HhhhhcC
Q 022652 156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRS-----------PIAKWIG 221 (294)
Q Consensus 156 ~~~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~S-----------~~~~~~~ 221 (294)
-...++.++|...+ .||+|+++++|++| ++++ +.+.+.++ ..+.||.||+|+|..| .+.+.+|
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lG 159 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRG 159 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCC
Confidence 35567777777776 48999999999999 2333 55776543 4699999999999876 4666676
Q ss_pred CCC-CccccceEE
Q 022652 222 FSE-PKYVGHCAY 233 (294)
Q Consensus 222 ~~~-~~~~~~~~~ 233 (294)
... +.++....+
T Consensus 160 h~i~~~~PaL~pl 172 (376)
T TIGR03862 160 VSVAPFAPANCGF 172 (376)
T ss_pred CcccCCcCeeceE
Confidence 663 334444443
No 353
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=97.82 E-value=0.00032 Score=57.77 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=62.7
Q ss_pred cCEEEecCCCCcHhhhhcCCCCCccccceEEEEEEeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCC
Q 022652 203 ANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPT 279 (294)
Q Consensus 203 ad~vV~A~G~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 279 (294)
|.++|+|||.+|.+|+.+....+. ..+.|.|..-.....+.++.-++++++...+.+++++.++.++.+.++...
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~--v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k 76 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQ--VRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPK 76 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCc--eeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCc
Confidence 789999999999999999744443 356677777766666778889999999999999999999999999988773
No 354
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.75 E-value=2.5e-05 Score=71.86 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~ 92 (294)
|+||||||.+|+.+|..|++.| ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999863
No 355
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.74 E-value=3.2e-05 Score=68.93 Aligned_cols=36 Identities=36% Similarity=0.483 Sum_probs=34.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..+|+||||||+||++|..|++.|++|+++|+.+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 378999999999999999999999999999999876
No 356
>PLN02976 amine oxidase
Probab=97.73 E-value=5.4e-05 Score=74.83 Aligned_cols=37 Identities=41% Similarity=0.655 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..++|+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 3589999999999999999999999999999998765
No 357
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.71 E-value=0.00012 Score=65.81 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|||+|..|+-+|..|++.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4679999999999999999999999999998865
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.67 E-value=0.00042 Score=67.65 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998775
No 359
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.66 E-value=0.00057 Score=64.40 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...+|+|||||..|+.+|..|.+.|. +|+|+++.+
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 34689999999999999999999997 599998775
No 360
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.65 E-value=0.00048 Score=67.91 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=68.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
..+|+|||+|+.|+.+|..|++.|. .|+|+|..+...
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~------------------------------------------ 354 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS------------------------------------------ 354 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh------------------------------------------
Confidence 4689999999999999999999996 588998765320
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEec----CCCEEEcCEEEecCCC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV----NGTRIYANIVIGCDGI 212 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~----~g~~~~ad~vV~A~G~ 212 (294)
..+.+.|.+ .+++++.++.|+++..++. +..|++. +++++.+|.|+++.|.
T Consensus 355 ----------------------~~l~~~L~~--~GV~i~~~~~v~~i~g~~~-v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 355 ----------------------PEARAEARE--LGIEVLTGHVVAATEGGKR-VSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred ----------------------HHHHHHHHH--cCCEEEcCCeEEEEecCCc-EEEEEEEecCCceEEEECCEEEEcCCc
Confidence 011222222 2789999999999975432 2234433 4467999999999997
Q ss_pred CcH--hhhhcC
Q 022652 213 RSP--IAKWIG 221 (294)
Q Consensus 213 ~S~--~~~~~~ 221 (294)
... +.+.++
T Consensus 410 ~Pnt~L~~~lg 420 (985)
T TIGR01372 410 TPVVHLFSQRG 420 (985)
T ss_pred CchhHHHHhcC
Confidence 653 444444
No 361
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.65 E-value=0.00044 Score=62.55 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
..+|+|||+|..|+.+|..+.+.|. +|+|+++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4689999999999999999999996 7999998764
No 362
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.62 E-value=0.00036 Score=61.07 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=35.4
Q ss_pred CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCC
Q 022652 171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (294)
Q Consensus 171 ~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (294)
++++++++.|+.+...... +.+.+|+++.++.+|+|+|.
T Consensus 141 gIe~~~~t~v~~~D~~~K~---l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKT---LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeeccccE---EEeCCCceeecceEEEeecC
Confidence 7899999999999876654 88999999999999999998
No 363
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.57 E-value=0.00069 Score=63.96 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
..+|+|||||..|+-+|..+.+.|. +|+++.+.+.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 3589999999999999999999997 6999987753
No 364
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.00013 Score=61.20 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=34.9
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 55 ~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
....||.+|||||-.|+..|...+..|.+|.|+|..-..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l 55 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL 55 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence 345899999999999999999999999999999987533
No 365
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.50 E-value=0.0011 Score=64.49 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc-C-CceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL-G-IGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~-G-~~V~vlE~~~ 91 (294)
..+|+|||||.+|+-+|..+.+. | .+|+++.+++
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 46899999999999999999887 5 3899999876
No 366
>PRK13984 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.0009 Score=62.67 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------ceEEEe
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI------GSLVIE 88 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~------~V~vlE 88 (294)
..+|+|||||..|+-+|..|++.|. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999998753 566653
No 367
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00011 Score=61.21 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...|-|||||+||..+|+.++++|++|.|+|.++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 34699999999999999999999999999998763
No 368
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.42 E-value=0.0004 Score=59.94 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=64.1
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------cCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccc
Q 022652 59 EDIVIVGAGIAGLATAVSLQR--------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL 124 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~--------------~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~ 124 (294)
..++||||||.|...|.+|+. .-++|+++|..+.+ +.+++.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i-------------L~mFdk------------ 273 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI-------------LNMFDK------------ 273 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-------------HHHHHH------------
Confidence 579999999999999999975 24589999888754 111110
Q ss_pred cccceEEEcCCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCC--EEE
Q 022652 125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT--RIY 202 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ 202 (294)
...++.+.+.+. .++++..++.|..+... . +.+.+.+|+ ++.
T Consensus 274 --------------------------------rl~~yae~~f~~-~~I~~~~~t~Vk~V~~~--~-I~~~~~~g~~~~iP 317 (491)
T KOG2495|consen 274 --------------------------------RLVEYAENQFVR-DGIDLDTGTMVKKVTEK--T-IHAKTKDGEIEEIP 317 (491)
T ss_pred --------------------------------HHHHHHHHHhhh-ccceeecccEEEeecCc--E-EEEEcCCCceeeec
Confidence 011112222222 27899999999988633 2 335666664 688
Q ss_pred cCEEEecCCCCc
Q 022652 203 ANIVIGCDGIRS 214 (294)
Q Consensus 203 ad~vV~A~G~~S 214 (294)
+-.+|.|+|...
T Consensus 318 YG~lVWatG~~~ 329 (491)
T KOG2495|consen 318 YGLLVWATGNGP 329 (491)
T ss_pred ceEEEecCCCCC
Confidence 999999999765
No 369
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00023 Score=60.52 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLR 94 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~~ 94 (294)
...|+|||+||||..+|..|.++ +++|.|+|+.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 44899999999999999999985 68999999998763
No 370
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.38 E-value=0.0018 Score=60.17 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcC--CCCceEeCCceeEEEEcC-CceEEEEe---cCCC--EEEcCEEEecCCCCcHh
Q 022652 158 RRILLETLANQL--PPESVQFSSELAKIETSG-NGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (294)
Q Consensus 158 ~~~l~~~L~~~~--~~v~i~~~~~v~~i~~~~-~~~~~v~~---~~g~--~~~ad~vV~A~G~~S~~ 216 (294)
-..+.+.|.+.+ .+++++.++.++++..++ +.+++|.. .+|+ .+.|+.||+|+|.++.+
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 346777777665 489999999999998754 44555544 3554 57899999999998864
No 371
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.37 E-value=0.0019 Score=57.39 Aligned_cols=36 Identities=42% Similarity=0.500 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~----G~~V~vlE~~~~~ 93 (294)
..++=|||+|+|+|++|.+|-|. |-+|+|+|+.+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 34678999999999999999986 4599999998755
No 372
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.34 E-value=0.00015 Score=58.50 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCceEEEecCCCC
Q 022652 61 IVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL 93 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~--G~~V~vlE~~~~~ 93 (294)
.+|||||+||.+||..|+.. ..+|+|+-..+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 58999999999999999976 4578888776643
No 373
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0032 Score=53.44 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=67.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..+|+|||||-+++.-|++|++.+-+|+++=|++..+.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence 45999999999999999999999999999988886521
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC--C--CEEEcCEEEecCCCC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR 213 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~ 213 (294)
...+.+.|.+. +++.+++++.+.++.-++ +..|.+.+ + ..+.+|.|..+.|..
T Consensus 181 --------------------~~~~~~~l~~~-~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 181 --------------------EEILVERLKKN-VKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGHL 237 (305)
T ss_pred --------------------CHHHHHHHHhc-CCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCCC
Confidence 01222222222 278899999999998665 33355554 3 267889999999965
Q ss_pred cH
Q 022652 214 SP 215 (294)
Q Consensus 214 S~ 215 (294)
..
T Consensus 238 p~ 239 (305)
T COG0492 238 PN 239 (305)
T ss_pred Cc
Confidence 44
No 374
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.23 E-value=0.0032 Score=58.27 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~---G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 134 (294)
+..++|||.|.+|..+...+.+. -++|+++-..+.+.. +-+.+++ +.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY--~Ri~Ls~--------------------------vl-- 52 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNY--NRILLSS--------------------------VL-- 52 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccc--cceeecc--------------------------cc--
Confidence 45799999999999999999883 458888866654411 0000000 00
Q ss_pred CCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCc
Q 022652 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 214 (294)
.......-..+.+.++.+. .+++++.+.+|+.+..+... |.+++|.++.+|.+|+|+|...
T Consensus 53 -----------~~~~~~edi~l~~~dwy~~-----~~i~L~~~~~v~~idr~~k~---V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 53 -----------AGEKTAEDISLNRNDWYEE-----NGITLYTGEKVIQIDRANKV---VTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred -----------CCCccHHHHhccchhhHHH-----cCcEEEcCCeeEEeccCcce---EEccCCcEeecceeEEecCccc
Confidence 0000000001222222221 28999999999999766543 7888999999999999999887
Q ss_pred Hh
Q 022652 215 PI 216 (294)
Q Consensus 215 ~~ 216 (294)
.+
T Consensus 114 fi 115 (793)
T COG1251 114 FI 115 (793)
T ss_pred cc
Confidence 76
No 375
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.22 E-value=0.004 Score=60.86 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~-G~-~V~vlE~~~ 91 (294)
...+|+|||||.+|+-+|..+.+. |. +|++++++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 356899999999999999999886 86 799999876
No 376
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.19 E-value=0.003 Score=62.34 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~ 91 (294)
...+|+|||||..|+-+|..+.+.|.+ |+++.+..
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 346899999999999999999999985 77777654
No 377
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.19 E-value=0.0032 Score=59.34 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
..+|+|||+|..|+-+|..+.+.|. +|+++++.+.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4689999999999999999999995 7999988753
No 378
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0026 Score=53.74 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=57.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
..||+|||||-+|+.+|+-|+--=-.|+++|-.+...
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------------------------------------------- 390 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------------------------------------------- 390 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------------------------------------------
Confidence 4799999999999999999987656899999887541
Q ss_pred EEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC
Q 022652 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN 197 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~ 197 (294)
...+++.-+..+++++|..|..-+++.-+++.+.++++.+
T Consensus 391 --------------------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d 430 (520)
T COG3634 391 --------------------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD 430 (520)
T ss_pred --------------------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence 1122222233446899999999999987777766666654
No 379
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.01 E-value=0.0016 Score=54.93 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=71.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
...+++|||||..++..|--++-.|-++.|+=|.+.+- +.+ ++
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL----------------R~F---D~------------------ 230 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL----------------RGF---DE------------------ 230 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh----------------cch---hH------------------
Confidence 46789999999999999999999999999987776441 000 00
Q ss_pred cEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.-+..+.+.|.. .|++++.++.++++....++-..+....|.....|.++.|.|..
T Consensus 231 -------------------~i~~~v~~~~~~--~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 231 -------------------MISDLVTEHLEG--RGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred -------------------HHHHHHHHHhhh--cceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence 111122222221 27899999999999988777444666677656699999999965
No 380
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.98 E-value=0.001 Score=50.80 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|+|||||..|.++|..|+++|++|.|+.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999876
No 381
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.96 E-value=0.0039 Score=55.24 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.4
Q ss_pred CCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCCcHh
Q 022652 171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (294)
Q Consensus 171 ~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 216 (294)
++.++.+++|+++...... +.+.++ .+.+|.+|+|+|+....
T Consensus 67 ~i~~~~~~~v~~id~~~~~---v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKV---VLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred CCEEeeCCEEEEecCCCCE---EEECCC-cccccEEEEcCCCcccC
Confidence 7789999999999766544 677777 79999999999987664
No 382
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.96 E-value=0.012 Score=53.70 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~~ 93 (294)
..+|+|||||..|+.+|..+.+.|. +|+++|..+..
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 4689999999999999988888875 79999987643
No 383
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.93 E-value=0.00083 Score=52.70 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|.|||.|..|+.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 699999999999999999999999999998874
No 384
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.92 E-value=0.0022 Score=58.79 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...+|+|||+|.+|+-+|..|++...+|.+.-|...
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 357899999999999999999999889999888753
No 385
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.92 E-value=0.0012 Score=51.65 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999764
No 386
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.91 E-value=0.0075 Score=52.40 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=33.8
Q ss_pred ccCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 54 ADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 54 ~~~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
....+..|||+|.|.+|+++...|-..-++|+|+..++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 344578999999999999999999988899999987764
No 387
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.86 E-value=0.01 Score=55.24 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~ 91 (294)
...|+|||+|..|+.+|..+.+.| .+|+|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999999998 5788888765
No 388
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.77 E-value=0.0025 Score=48.21 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=29.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
|+|+|+|..|+..|..|++.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998877
No 389
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0023 Score=51.92 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=44.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC-------CcCceEEEcccHHHHHHHcCCc
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-------TGGTSLTLFKNGWSVLDALGVG 116 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~-------~~g~~~~~~~~~~~~l~~lg~~ 116 (294)
+++|||+|-.|.+.|..|.+.|++|+++|+.+... .............+.|+++|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 68999999999999999999999999999987531 1223344455567788888764
No 390
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.69 E-value=0.0025 Score=57.97 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999765
No 391
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.53 E-value=0.0044 Score=53.04 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|||+|..|...|..|++.|++|+++.+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4579999999999999999999999999998865
No 392
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.0034 Score=56.81 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
+|+|||.|.+|+++|..|+++|++|++.|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 393
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.47 E-value=0.004 Score=53.15 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 394
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.40 E-value=0.013 Score=50.66 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=36.6
Q ss_pred CCCceEeCCceeEEEEcCCceEEEEecC-----CCEEEcCEEEecCCCCcHhh
Q 022652 170 PPESVQFSSELAKIETSGNGVTILELVN-----GTRIYANIVIGCDGIRSPIA 217 (294)
Q Consensus 170 ~~v~i~~~~~v~~i~~~~~~~~~v~~~~-----g~~~~ad~vV~A~G~~S~~~ 217 (294)
+.+.++-+++|++++..+++...+.+.. .+++++|.||.|||-+-.+.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCc
Confidence 4688999999999999887744444432 24789999999999875443
No 395
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.39 E-value=0.0055 Score=52.23 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
.+|+|||+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999964
No 396
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.0045 Score=53.33 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|.|||.|.+||.+|..|++.|++|+.+|....
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 689999999999999999999999999998763
No 397
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.14 Score=44.42 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~ 94 (294)
..|||+|+|-|..=+.++..|+..|.+|+.+||++.-+
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYG 40 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCC
Confidence 34999999999999999999999999999999997543
No 398
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0054 Score=50.69 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-------CceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLG-------IGSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G-------~~V~vlE~~~~~ 93 (294)
..+|+|||+|..||++|..+.+.+ .+|++++-+..+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 568999999999999999988854 578888876544
No 399
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.0065 Score=51.23 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..|.|||+|.-|...|..+++.|++|+++|..+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 37999999999999999999999999999998754
No 400
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.25 E-value=0.093 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRL 80 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~ 80 (294)
..+|+|||+|.+|+-+|..|.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 46899999999999999999886
No 401
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.22 E-value=0.008 Score=51.37 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..|.|||+|..|...|..++..|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 402
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.21 E-value=0.0089 Score=44.28 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4579999999999999999999999 799999886
No 403
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.20 E-value=0.007 Score=51.14 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 404
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.15 E-value=0.0095 Score=47.36 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35689999999999999999999999 699999884
No 405
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.11 E-value=0.0076 Score=50.95 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 599999999999999999999999999998864
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.11 E-value=0.011 Score=44.94 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEe
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIE 88 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE 88 (294)
....|+|||||-+|..-+..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 35689999999999999999999999999995
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.06 E-value=0.011 Score=48.93 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
....|+|||+|-+|..+|..|++.|+ +++|+|.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 35689999999999999999999996 8999998763
No 408
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.05 E-value=0.01 Score=50.31 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 409
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.04 E-value=0.0095 Score=50.72 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEec
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~ 89 (294)
+|+|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 410
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.02 E-value=0.014 Score=46.62 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...|+|||||.+|...+..|.+.|.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998754
No 411
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.01 Score=53.52 Aligned_cols=34 Identities=32% Similarity=0.667 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999975
No 412
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.02 E-value=0.0088 Score=47.49 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...+|+|||+|.++..+|..|++.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35789999999999999999999999999998876
No 413
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.99 E-value=0.013 Score=45.17 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
....|+|+|+|.+|..||..|...|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35789999999999999999999999999999875
No 414
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.98 E-value=0.011 Score=50.41 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|+|||+|..|...|..|++.|++|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999854
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.95 E-value=0.0098 Score=50.36 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 416
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.94 E-value=0.037 Score=48.13 Aligned_cols=139 Identities=19% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH--cCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~--~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 133 (294)
+.+..-+|||+|.+..+++..... .+.+|.++-..++... .+ |...+.|-..+ .-.....+++..
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY-mR-----PPLSKELW~~~-------dpn~~k~lrfkq 242 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY-MR-----PPLSKELWWYG-------DPNSAKKLRFKQ 242 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc-cC-----CCcchhceecC-------CCChhhheeecc
Confidence 345779999999988877766654 4678888866554310 00 00000000000 011122333333
Q ss_pred CCCcEEEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecCCCEEEcCEEEecCCCC
Q 022652 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (294)
.+|.....+- ....+.+++.+|-+.. ..|+.+..+.+|+.|...+.. |.+.||.+|.+|..++|+|..
T Consensus 243 wsGkeRsiff------epd~FfvspeDLp~~~---nGGvAvl~G~kvvkid~~d~~---V~LnDG~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 243 WSGKERSIFF------EPDGFFVSPEDLPKAV---NGGVAVLRGRKVVKIDEEDKK---VILNDGTTIGYDKCLIATGVR 310 (659)
T ss_pred cCCccceeEe------cCCcceeChhHCcccc---cCceEEEeccceEEeecccCe---EEecCCcEeehhheeeecCcC
Confidence 3333322111 2223346666655432 137889999999999876654 789999999999999999987
Q ss_pred cHhhhh
Q 022652 214 SPIAKW 219 (294)
Q Consensus 214 S~~~~~ 219 (294)
..--..
T Consensus 311 Pk~l~~ 316 (659)
T KOG1346|consen 311 PKKLQV 316 (659)
T ss_pred cccchh
Confidence 654333
No 417
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.90 E-value=0.013 Score=50.86 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 469999999999999999999999999999853
No 418
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.89 E-value=0.016 Score=46.18 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~ 90 (294)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3568999999999999999999999999999764
No 419
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.014 Score=49.24 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=65.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEcccHHHHHHHcCCchhHHhccccccceEEEcCCCcE
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
-+-+|||||.++|.||-+|+-.|++|+|.=|.--.+..-
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFD----------------------------------------- 237 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFD----------------------------------------- 237 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccccc-----------------------------------------
Confidence 468999999999999999999999999986654331100
Q ss_pred EEEecCCCCCCCcceeeeeHHHHHHHHHhcCCCCceEeCCceeEEEEcCCceEEEEecC---C--CEEEcCEEEecCCCC
Q 022652 139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIR 213 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~ 213 (294)
-+..++.....+. .|+++...+..+.+++.+++...|...+ + -+-.+|.|+.|.|..
T Consensus 238 -----------------qdmae~v~~~m~~-~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 238 -----------------QDMAELVAEHMEE-RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred -----------------HHHHHHHHHHHHH-hCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccc
Confidence 0111222222222 2788887777888887777644444432 2 245789999999987
Q ss_pred cHhh
Q 022652 214 SPIA 217 (294)
Q Consensus 214 S~~~ 217 (294)
+.++
T Consensus 300 ~~~~ 303 (503)
T KOG4716|consen 300 ALTD 303 (503)
T ss_pred cchh
Confidence 6543
No 420
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.88 E-value=0.088 Score=51.33 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---cCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~---~G~~V~vlE~~~ 91 (294)
..+|||||||.+|+-+|..+.+ .+..+.+.+...
T Consensus 550 Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~ 586 (1028)
T PRK06567 550 RMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE 586 (1028)
T ss_pred CCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh
Confidence 3579999999999999986654 467777777643
No 421
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.011 Score=49.74 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||+|..|...|..|+++|++|+++|..+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999998764
No 422
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.85 E-value=0.013 Score=53.24 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...+|+|+|+|++|+.++..+...|.+|.++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 356899999999999999999999999999998864
No 423
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.83 E-value=0.0082 Score=42.21 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
....|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45689999999999999999999999999998774
No 424
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.76 E-value=0.016 Score=49.48 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~ 92 (294)
+|.|||+|.+|.++|+.|+++|+ .+.++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999995 8999998764
No 425
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.078 Score=42.25 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
.....+|||||=+.+.-|.+|.+.+-+|.|+-|++..
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f 192 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF 192 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh
Confidence 3467999999999999999999999999999988865
No 426
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.74 E-value=0.014 Score=51.95 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 427
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.72 E-value=0.019 Score=48.85 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
.+|.|||+|..|..+|+.|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 369999999999999999999887 8999998554
No 428
>PRK04148 hypothetical protein; Provisional
Probab=95.67 E-value=0.019 Score=42.15 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3579999999 999999999999999999998874
No 429
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.64 E-value=0.03 Score=41.46 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~-V~vlE~~~ 91 (294)
...+++|||+|-+|-+++.+|++.|.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 467899999999999999999999997 99998865
No 430
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.60 E-value=0.021 Score=40.91 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
|+|||.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998889999999874
No 431
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.56 E-value=0.021 Score=49.25 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5679999999999999999999998 899999975
No 432
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.022 Score=48.69 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
.+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999865
No 433
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.54 E-value=0.03 Score=41.85 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=30.1
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--ceEEEecCCC
Q 022652 60 DIVIVGA-GIAGLATAVSLQRLGI--GSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGa-G~aGl~~A~~L~~~G~--~V~vlE~~~~ 92 (294)
+|+|||+ |..|.++|+.|...++ ++.|+|....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 6999999 9999999999999987 7999999863
No 434
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.52 E-value=0.023 Score=49.77 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...+|+|||+|.+|..+|..|.+.|.+|+++|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999865
No 435
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.51 E-value=0.094 Score=46.98 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=32.3
Q ss_pred CCceEeCCceeEEEEcCCceEEEEec-CCCEEE--cCEEEecCCCCcH
Q 022652 171 PESVQFSSELAKIETSGNGVTILELV-NGTRIY--ANIVIGCDGIRSP 215 (294)
Q Consensus 171 ~v~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~--ad~vV~A~G~~S~ 215 (294)
+++++.+++|+++..++.. +.+... +++++. +|.||+|+|....
T Consensus 58 gv~~~~~~~V~~id~~~~~-v~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQT-VVVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred CCeEEecCEEEEEECCCCE-EEEEECCCCCEEecCCCEEEECCCCCCC
Confidence 7888889999999866554 334433 245677 9999999998543
No 436
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.49 E-value=0.029 Score=48.01 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~ 92 (294)
...+|+|||+|-+|.++|+.|+..|+ ++.|+|....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 45689999999999999999999998 7999998653
No 437
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.47 E-value=0.019 Score=42.55 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
++|+|+|..+..++..++..|++|+|+|.+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~ 33 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER 33 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence 589999999999999999999999999988753
No 438
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.44 E-value=0.026 Score=48.72 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35689999999999999999999999 999999975
No 439
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.43 E-value=0.024 Score=48.08 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||+|..|...|..|++.|++|.++|+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 440
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.43 E-value=0.029 Score=43.51 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999876
No 441
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.41 E-value=0.03 Score=44.99 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35689999999999999999999999 599999875
No 442
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.41 E-value=0.045 Score=42.12 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEecCC
Q 022652 56 VRKEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 56 ~~~~dvvIIGaG~-aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
-...+|+|||+|- +|..+|..|.++|.+|+++.+..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3568999999996 79999999999999999999863
No 443
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.41 E-value=0.019 Score=51.16 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|.|||.|..|+.+|..|++.|++|+++|+.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998764
No 444
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.34 E-value=0.025 Score=49.98 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...|+|+|+|+.|+.+|..|...|.+|+++|..+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 46899999999999999999999999999998763
No 445
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.33 E-value=0.031 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5689999999999999999999998 899999876
No 446
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.33 E-value=0.033 Score=44.38 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
....|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45789999999999999999999998 899999875
No 447
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.31 E-value=0.033 Score=41.63 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999886
No 448
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.30 E-value=0.027 Score=48.48 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|.|||+|..|.+.|..|++.|.+|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999864
No 449
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.035 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~ 95 (294)
..|||+|.|-|+.=+.++..|+..|.+|+.+|+++.-+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 479999999999999999999999999999999986543
No 450
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.29 E-value=0.037 Score=47.44 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL 93 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~~ 93 (294)
..+|+|||+|-.|..+|+.|+..|+ ++.|+|..+..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 3589999999999999999999997 99999987753
No 451
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.26 E-value=0.033 Score=45.83 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999998 899999875
No 452
>PRK08328 hypothetical protein; Provisional
Probab=95.19 E-value=0.036 Score=45.18 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999998 799998776
No 453
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.18 E-value=0.028 Score=50.75 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G--~~V~vlE~~~~ 92 (294)
.+|+|||.|.+|+.+|..|+++| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 36999999999999999999985 78999998763
No 454
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.16 E-value=0.037 Score=47.25 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
.+|+|||+|..|..+|+.++..|+ +|.++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999998654
No 455
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.16 E-value=0.03 Score=48.14 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|.|||+|..|...|..|++.|++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999865
No 456
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.11 E-value=0.04 Score=47.03 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..+|.|||+|..|...|..|++.|++|.++++...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34699999999999999999999999999998763
No 457
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.11 E-value=0.042 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.576 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~ 92 (294)
..+|+|||+|-+|.++|+.|+..|+ ++.|+|....
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4589999999999999999999887 6999998653
No 458
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.05 E-value=0.041 Score=44.75 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999998 899998875
No 459
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.00 E-value=0.044 Score=47.23 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999965
No 460
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.98 E-value=0.031 Score=47.02 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|.|||.|..|.+.|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999865
No 461
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.96 E-value=0.03 Score=44.49 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
....|.|||||.-|.-.|.-.+..|++|.|+|+...
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 467899999999999999999999999999999864
No 462
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.039 Score=50.46 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 34699999999999999999999999999998864
No 463
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.93 E-value=0.042 Score=47.97 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~ 91 (294)
.+|+|||||-+|..+|..|++.| .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 47999999999999999999999 8999999985
No 464
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.031 Score=46.70 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
..-+|+|||||.+|..+|..+...|.+|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 45689999999999999999999999999999884
No 465
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.87 E-value=0.05 Score=43.20 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5689999999999999999999999 699999876
No 466
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.87 E-value=0.042 Score=50.19 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 467
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.043 Score=47.54 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=41.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCCcCceEEEc
Q 022652 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLF 103 (294)
Q Consensus 56 ~~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~~~~g~~~~~~ 103 (294)
+..+||||||-|..=..+|.+.++.|.+|+-+|+++.-++...+.++.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 468999999999999999999999999999999999776555555443
No 468
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.86 E-value=0.037 Score=47.16 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|+|+|+|..|...|+.|++.|.+|+++=|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 699999999999999999999988888877663
No 469
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.86 E-value=0.051 Score=44.20 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
...|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5689999999999999999999999 899999876
No 470
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.83 E-value=0.048 Score=43.25 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
....|+|||+|-.|+.+|..|++.|+ +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35689999999999999999999999 699999876
No 471
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.76 E-value=0.049 Score=46.45 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~ 92 (294)
+|+|||+|-+|.++|+.|+..|+ ++.++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 59999999999999999999995 7999998764
No 472
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.76 E-value=0.053 Score=44.35 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-----------CceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLG-----------IGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G-----------~~V~vlE~~~ 91 (294)
...+|+|||+|-.|+.++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 5678999999999999999999974 3889999876
No 473
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.76 E-value=0.057 Score=41.39 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
.+|.+||-|..|...|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4799999999999999999999999999998753
No 474
>PRK08223 hypothetical protein; Validated
Probab=94.73 E-value=0.058 Score=45.14 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35689999999999999999999999 899999876
No 475
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.71 E-value=0.042 Score=50.18 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 34699999999999999999999999999999864
No 476
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.71 E-value=0.044 Score=46.59 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 61 IVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 61 vvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
|.|||+|..|..+|+.|+..|+ +|+++|....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 5899999999999999999887 9999999864
No 477
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.70 E-value=0.056 Score=45.55 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
..+|+|||+|-+|-++|+.|++.|. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4679999999999999999999998 799999875
No 478
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.70 E-value=0.059 Score=43.75 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIG---SLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~---V~vlE~~~ 91 (294)
...+|+|+|+|-+|..+|..|.+.|.+ +.|+++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 346899999999999999999999985 99999985
No 479
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.66 E-value=0.042 Score=48.45 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
+|.|||.|..|+.+|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988885 999999999764
No 480
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.58 E-value=0.061 Score=45.78 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--ceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~~ 92 (294)
+|.|||+|-+|.++|+.|...|+ ++.|+|....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 48999999999999999999987 6999998653
No 481
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.53 E-value=0.067 Score=43.57 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+|+|||+|-.|+.++..|++.|+ +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 899999876
No 482
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.52 E-value=0.043 Score=52.42 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..|.|||||..|...|..+++.|++|+++|....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998864
No 483
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.51 E-value=0.054 Score=46.23 Aligned_cols=33 Identities=21% Similarity=0.548 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC--ceEEEecCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD 91 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~--~V~vlE~~~ 91 (294)
.+|+|||+|..|.+.|..|++.|. +|.++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999995 899999875
No 484
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.49 E-value=0.072 Score=43.79 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...+++|+|||..+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999997765
No 485
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.45 E-value=0.059 Score=47.52 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
....|+|+|.|..|..+|..|...|.+|+++|..+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 356899999999999999999999999999998763
No 486
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.40 E-value=0.081 Score=42.06 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...|+|+|.|-.|..+|..|.+.|.+|+++|+..
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4679999999999999999999999999998764
No 487
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.30 E-value=0.059 Score=51.44 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~~ 93 (294)
..|.|||||..|...|..+++.|++|+++|.....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999998643
No 488
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.30 E-value=0.082 Score=44.83 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...+|+|||.|.+|..++..|.+.|.+|+++++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35789999999999999999999999999999985
No 489
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.29 E-value=0.059 Score=48.88 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..+|+|+|+|.+|+.++..+...|.+|+++|.+..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998763
No 490
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.28 E-value=0.088 Score=45.18 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G-~~V~vlE~~~~ 92 (294)
..+|+|||||-.|.++|+.|+..| .++.|+|....
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 568999999999999999999999 48999998764
No 491
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.15 E-value=0.083 Score=42.66 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.3
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 60 DIVIVG-AGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 60 dvvIIG-aG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
+|.||| +|..|.++|..|++.|++|.++++.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998765
No 492
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.10 E-value=0.087 Score=44.31 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+|+|||+|-.|+.++..|++.|+ +++|+|.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 48999999999999999999998 899999875
No 493
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.09 E-value=0.072 Score=46.40 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~~ 92 (294)
.|+|+|+|+.||.++..+...|. +|+++|..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 69999999999999888888896 6677777663
No 494
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.07 E-value=0.1 Score=47.06 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
...|+|+|.|-+|+++|..|+++|.+|++.|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34799999999999999999999999999997664
No 495
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.07 E-value=0.088 Score=44.25 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 48999999999999999999998 899999875
No 496
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.05 E-value=0.083 Score=44.94 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 60 dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
+|+|||+|-.|+.+|..|+..|+ +++|+|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 48999999999999999999998 899999876
No 497
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.05 E-value=0.14 Score=34.59 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEec
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQ 89 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~-G~~V~vlE~ 89 (294)
...+++|+|+|-+|..++..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356799999999999999999998 678999988
No 498
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.03 E-value=0.091 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 022652 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (294)
Q Consensus 57 ~~~dvvIIGaG~aGl~~A~~L~~~G~-~V~vlE~~~ 91 (294)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35689999999999999999999998 899999875
No 499
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.089 Score=47.45 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 022652 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (294)
Q Consensus 58 ~~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~ 91 (294)
...|+|+|+|-.|.++|..|++.|.+|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3469999999999999999999999999999765
No 500
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.97 E-value=0.065 Score=51.34 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 022652 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (294)
Q Consensus 59 ~dvvIIGaG~aGl~~A~~L~~~G~~V~vlE~~~~ 92 (294)
..|.|||||..|...|..++..|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 5699999999999999999999999999998864
Done!