BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022653
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus
GN=Emg1 PE=1 SV=1
Length = 244
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 142/206 (68%), Gaps = 4/206 (1%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE ASLE KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43 LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ VY+ T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161
Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIA 268
PV+ + PV KIG S+S E + +R V S D +VFVVGA AHGK+ +YT+ +++
Sbjct: 162 PVSDHFPVGCMKIGTSFSVEDISDIRELVPS---SDPVVFVVGAFAHGKVSVEYTEKMVS 218
Query: 269 ISGYPLSAARCIARICEALEDKWNLL 294
IS YPLSAA A++ A E+ W ++
Sbjct: 219 ISNYPLSAALTCAKVTTAFEEVWGVI 244
>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens
GN=EMG1 PE=1 SV=4
Length = 244
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE ASLE KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43 LIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ VY+ T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161
Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIA 268
PV+ + PV K+G S+S + +R V S D +VFVVGA AHGK+ +YT+ +++
Sbjct: 162 PVSDHFPVGCMKVGTSFSIPVVSDVRELVPS---SDPIVFVVGAFAHGKVSVEYTEKMVS 218
Query: 269 ISGYPLSAARCIARICEALEDKWNLL 294
IS YPLSAA A++ A E+ W ++
Sbjct: 219 ISNYPLSAALTCAKLTTAFEEVWGVI 244
>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1
OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1
Length = 231
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 140/203 (68%), Gaps = 2/203 (0%)
Query: 92 VLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGR 151
VLE SLE AKVG Y IL+SD H+NFLR+ K+PADYRPDI+HQ LL++LDS L +AG+
Sbjct: 31 VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90
Query: 152 LQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVT 211
L+ V+ RT K VL +V P R+PRT+ RF G+M+QLL KLSI A +KL+ V+KNPV+
Sbjct: 91 LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 149
Query: 212 QYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISG 271
+LPV SRK+ S++ +L M N + + D+ LV ++G +A GKI DY D IS
Sbjct: 150 NHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 208
Query: 272 YPLSAARCIARICEALEDKWNLL 294
YPLSAA A++ LE+ W ++
Sbjct: 209 YPLSAALTCAKVTSGLEEIWGII 231
>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mra1 PE=1 SV=2
Length = 359
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 150/231 (64%), Gaps = 13/231 (5%)
Query: 68 VVHEMEGIP---IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLR 120
V M IP I D T+R +I VL++A LE+ KVGK+ YQ+LN DDH L+
Sbjct: 128 VTTHMAPIPARSIGSHDTTTQR--LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILK 185
Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
+ N+N A RPDI HQ LL++LDS L KAGRLQ VY+ T K VL EV P VR+PRT+KRF
Sbjct: 186 KLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQ-VYIHTAKKVLIEVNPSVRIPRTFKRF 244
Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASI 240
+G+M+QLL KLSI +V EKLL+VIKNPVT YLP N RK S+ + V R Y+ ++
Sbjct: 245 SGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDAPT-VPPRKYLETL 303
Query: 241 SDDDNLVFVVGAMAHGKIDCD--YTDDLIAISGYPLSAARCIARICEALED 289
+ ++ +GAMAHG D + D+ I+IS YPLSA+ ++ ++ED
Sbjct: 304 QPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYPLSASIACSKFLHSMED 354
>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila
melanogaster GN=CG3527 PE=3 SV=2
Length = 252
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 138/211 (65%), Gaps = 6/211 (2%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE A LE KV ++++LN DDH+ +R+N ++P RPDI HQ LL + DS L +
Sbjct: 43 LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ V+VRT+ VL E+ P R+PRT+KRFAG+M+QLL K I A +L+ VIKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 161
Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYV-----ASISDDDNLVFVVGAMAHGKIDCDYT 263
P+T ++PV +K S+S + L R+ V S S D+ +V V+GA AHG + DYT
Sbjct: 162 PITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYT 221
Query: 264 DDLIAISGYPLSAARCIARICEALEDKWNLL 294
++L +IS YPLSAA ++IC A E+ W ++
Sbjct: 222 EELFSISNYPLSAAIACSKICSAFEEVWGVV 252
>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1
SV=1
Length = 252
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 155/233 (66%), Gaps = 17/233 (7%)
Query: 75 IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
+P AP D+ TKR +I VL ASLE K+ G Y +LN DDH L++
Sbjct: 24 VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 81
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 82 RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 140
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDD 243
M+QLL KLSI +V EKLL+VIKNP+T +LP RK+ S+ + ++++++Y+ + DD
Sbjct: 141 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLDDD 199
Query: 244 DNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAARCIARICEALEDKWNLL 294
+++ VGAMA GK + +Y D+ + +S YPLSA+ ++ C ED WN+L
Sbjct: 200 ESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
albicans GN=NEP1 PE=3 SV=1
Length = 267
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 154/232 (66%), Gaps = 17/232 (7%)
Query: 75 IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
+P+ P+ D+ T+R +I VL +A LE K+ G + +LN DDH LR+
Sbjct: 39 VPVQPTALTSRDKTTQR--LIVVLSQACLETYKMNSGGPGGDRFALLNCDDHQGLLRKMG 96
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
++ A+ RPDI HQ LL++LDS + KAGRLQ VY++T +GVL EV P VR+PRT+KRF+G+
Sbjct: 97 RDIAEARPDITHQCLLTLLDSPINKAGRLQ-VYIQTARGVLIEVNPSVRIPRTFKRFSGL 155
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDD 243
M+QLL KLSI + +E LL+VIKNP+T +LP RK+ S+ +E L ++++YV ++ ++
Sbjct: 156 MVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSFDAE-LKRVQDYVTTLDEN 214
Query: 244 DNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAARCIARICEALEDKWNL 293
+++ VGAMA GK + ++ D+ I +S YPLSA+ ++ C ED W +
Sbjct: 215 ESICVFVGAMARGKDNFADEFVDEKIGLSDYPLSASVACSKFCHGCEDVWGI 266
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1
Length = 229
Score = 178 bits (451), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 138/225 (61%), Gaps = 9/225 (4%)
Query: 74 GIPIAPSDQNTKRPGVIFVLEKASLEVAKVG-KSYQILNSDDHSNFLRRNNKNPADYRPD 132
G P S + P + VL +ASLE +LN DDH LR+ ++ A+ RPD
Sbjct: 10 GGPNNSSVTKKQEPRLYVVLCEASLETYTSNDHRTSLLNCDDHQGILRKMGRDIAEARPD 69
Query: 133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
I HQ LL++LDS + KAG LQ VY+ T K VL EV P VR+PRT+KRF+G+M+QLL KLS
Sbjct: 70 ITHQCLLTLLDSPINKAGLLQ-VYILTKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 128
Query: 193 ITAV-GKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVG 251
I ++ LLRV+KNPVT+YLP + RK+ S+ +E +++ + Y + D ++ VG
Sbjct: 129 IRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSFDAE-VMRPQEY---LGDKQSVCVFVG 184
Query: 252 AMA--HGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL 294
AMA H +Y DD IAIS YPLSA+ ++ C ED W ++
Sbjct: 185 AMARGHDSFADEYVDDKIAISNYPLSASVACSKFCHGAEDAWAII 229
>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=nep1 PE=3 SV=1
Length = 220
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 5/186 (2%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H L++ RPDIVH LL+ L+S K G L+ VYV T + +K
Sbjct: 39 ILDSTYHHAALKKLPDGDRRGRPDIVHICLLNALESIANKEGFLR-VYVHTRNDEVIHIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLP-VNSRKIGFSYSS 227
P RLPR Y RF G+M L +K AV + +LLR+ K P+ + +N + +
Sbjct: 98 PETRLPRNYNRFLGLMESLFKK---GAVPEGLELLRIEKKPLESLIEDINPDTVFIMHEE 154
Query: 228 EKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEAL 287
+L++ R++ ++ N V VVG HG +++ PL A ++ +
Sbjct: 155 GELIRPRSFGEILASHQNPVVVVGGFPHGDFMRPIEGTKVSLYREPLMAWTVVSEVIVNF 214
Query: 288 EDKWNL 293
E L
Sbjct: 215 EAALGL 220
>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1
Length = 229
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H LR+ RPDIVH LL+ LDS L K RL+ VYV T + +K
Sbjct: 44 ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL-PVNSRKIGFSYSS 227
P RLPR Y RF G+M L +K AV + +LLR+ K + + + +N + +
Sbjct: 103 PETRLPRNYNRFIGLMENLFEK---GAVPEDLELLRMEKKTLNELIEEINPDVVFIMHEE 159
Query: 228 EKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGY--PLSAARCIARICE 285
+L+ +N+ + +VG HG D D + IS Y PL A + +
Sbjct: 160 GELMIPKNFGKLLDKFKKPTVIVGGFPHG--DFKSKVDGVKISLYREPLMAWTIVNEVIV 217
Query: 286 ALEDKWNLL 294
+ E W ++
Sbjct: 218 SYE--WEVI 224
>sp|A3DNG9|NEP1_STAMF Ribosomal RNA small subunit methyltransferase Nep1
OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1) GN=nep1 PE=3 SV=1
Length = 230
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 35/183 (19%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVH +LL+ L+S L K G L+ +Y+ T G + VKP R+PR Y RF G+M QLL
Sbjct: 65 RPDIVHISLLNALESPLNKEGYLR-IYIHTYPGHIIFVKPETRIPRNYNRFVGLMEQLLI 123
Query: 190 K-----------LSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVA 238
L + + + L ++ KN + + R+ G E +VK
Sbjct: 124 HGKVPPDSDDPLLYVKTMTISDLLEKINKNGI-----ILLREHGEKEKPENIVKY----- 173
Query: 239 SISDDDNLVFVVGAMAHGKIDCDYTDDLIAIS-------GYPLSAARCIARICEALEDKW 291
+ ++N +G HG DY+ ++I+IS PL+ I+R+ E +
Sbjct: 174 --AVENNYAIGIGGFPHG----DYSQEIISISKAEFSIYNKPLTTWITISRVIVGAEHLY 227
Query: 292 NLL 294
N++
Sbjct: 228 NII 230
>sp|Q9V0M0|NEP1_PYRAB Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=nep1 PE=3 SV=1
Length = 232
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H L++ RPDIVH LL+ LDS L K RL+ VYV T + +K
Sbjct: 44 ILDSTYHHAALKQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL-PVNSRKIGFSYSS 227
P RLPR Y RF G+M L +K AV + +LLR+ + + + + +N + +
Sbjct: 103 PETRLPRNYNRFIGLMESLFEK---GAVPEDLELLRLERKTLQELINEINPDAVFVMHEE 159
Query: 228 EKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEAL 287
+L+ +N+ + ++G HG I++ PL A + + +
Sbjct: 160 GELMIPKNFGKLLDKFKKPAVIIGGFPHGDFRSRVEGVKISLYKEPLMAWTIVNEVIVSY 219
Query: 288 EDKWNLL 294
E W ++
Sbjct: 220 E--WEVI 224
>sp|Q57977|NEP1_METJA Ribosomal RNA small subunit methyltransferase Nep1
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nep1 PE=1
SV=1
Length = 205
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 92 VLEKASLEVA------KVGKS----YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSI 141
+L K++LE+ K+ KS Y IL+S+ H + + RPDI+H +LL+I
Sbjct: 6 ILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNI 65
Query: 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREK 201
LDS + +L +Y+ T + ++ P RLPR Y RF G+M ++L+ G+R
Sbjct: 66 LDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLK-------GERNH 117
Query: 202 LLRVIKNPVTQYL-PVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDC 260
L+++ + + L +N++KI + KL + + + D F++G +GK+
Sbjct: 118 LIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPK----LLKEYD--TFIIGGFPYGKLKI 171
Query: 261 D---YTDDLIAISGY--PLSAARCIARICEAL 287
+ D+ IS Y L A IC +L
Sbjct: 172 NKEKVFGDIKEISIYNKGLMAWTVCGIICYSL 203
>sp|Q97WJ0|NEP1_SULSO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=nep1 PE=3 SV=2
Length = 218
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 29/168 (17%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI+HQALL IL + K +++ T + + +V P++R P+ Y RF G+M QLL+
Sbjct: 61 RPDILHQALLVILTDPVIKGD----IFIHTIQSKIIKVNPNMRPPKNYLRFIGLMEQLLK 116
Query: 190 KLSITAVGKREKLLRV----IKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDN 245
I G E L+ V + N V +Y + + G + E++ K+ D+
Sbjct: 117 YGKIPINGD-ETLMEVTNLTLDNIVNRYDLILLSEKGEKINPEEICKL---------DEK 166
Query: 246 LVFVVGAMAHGKIDCDYTDDLI-------AISGYPLSAARCIARICEA 286
+ +GA HG D++D ++ +ISG+PL + + RI A
Sbjct: 167 WLLGIGAFPHG----DFSDKILNLAKKIYSISGFPLETQQVLCRIFSA 210
>sp|Q8U1E6|NEP1_PYRFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=nep1 PE=3 SV=2
Length = 223
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H LR+ RPDIVH LL+ LDS L K RL+ VYV T + V
Sbjct: 42 ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDEVIYVD 100
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL-PVNSRKIGFSYSS 227
P RLPR Y RF G+M L +K V + +LLR+ K + + + ++ + + +
Sbjct: 101 PSTRLPRNYNRFIGLMESLFEK---KVVPEDLQLLRLEKKTLAELINEISPDAVFIMHEN 157
Query: 228 EKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEAL 287
+ + +++ ++ V +VG HG I++ PL A + + +
Sbjct: 158 GEFMIPKHFGKLLASFKKPVVIVGGFPHGDFRSKVEGVKISLYREPLMAWTIVNEVIVSY 217
Query: 288 EDKWNLL 294
E W ++
Sbjct: 218 E--WEVI 222
>sp|Q9YES9|NEP1_AERPE Ribosomal RNA small subunit methyltransferase Nep1 OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=nep1 PE=3 SV=1
Length = 224
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 14/200 (7%)
Query: 99 EVAKVGKSYQILNSD---DHSNFLRRNNKNPADY---RPDIVHQALLSILDSRLTKAGRL 152
+V K + Y I D D S + PA + RPDI+H ALL+ DS L G L
Sbjct: 22 QVLKSARRYGIEPGDLLLDKSLHYNAMAELPAKWKRGRPDILHVALLTTTDSPLYNEGLL 81
Query: 153 QAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQ 212
+ +Y + G LFEV VR+P+ Y+RF G++ QLL+ + G+ E L+R+ + +
Sbjct: 82 R-IYFQVYDGRLFEVGTGVRVPKNYERFRGLVAQLLKTERVPP-GEGEALIRLHSRSLAE 139
Query: 213 YLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDY----TDDLIA 268
++ R I YVA+ + L VG G+ ++
Sbjct: 140 FVEREGRFILMWEKGSPTTT--TYVAARALSTGLPIGVGCFPRGEFKRSTLRKASEAYSI 197
Query: 269 ISGYPLSAARCIARICEALE 288
+ G PL +RI ALE
Sbjct: 198 MGGAPLKTWGVASRIVYALE 217
>sp|B6YTM6|NEP1_THEON Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
onnurineus (strain NA1) GN=nep1 PE=3 SV=1
Length = 219
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 6/186 (3%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+S H + L++ RPDIVH LL+ L+S K G+L+ VYV T + +K
Sbjct: 39 LLDSTYHHSALKKLEDGERRGRPDIVHVCLLNALESIANKEGKLR-VYVHTRNDEVIYIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL-PVNSRKIGFSYSS 227
P R+PR Y RF G+M L + V + +LLR+ + + + + + + + +
Sbjct: 98 PETRIPRNYNRFVGLMESLFKN---GVVPEGLELLRMEEKSLAELIDEIKPDGVFVMHEN 154
Query: 228 EKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEAL 287
+ +K + + ++ + + VVG HG + I++ PL A + I
Sbjct: 155 GESMKPQEFGKVLAGLQSPLVVVGGFPHGDFRSEIPGKKISLYKAPLMAWTVVNEIIINF 214
Query: 288 EDKWNL 293
E W L
Sbjct: 215 E-HWVL 219
>sp|A0B5L3|NEP1_METTP Ribosomal RNA small subunit methyltransferase Nep1 OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=nep1 PE=3 SV=1
Length = 226
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 18/170 (10%)
Query: 108 QILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEV 167
IL++ H + +R RPDIVH LL L+S L + G+L+ VY+ T + +
Sbjct: 38 SILDASLHHSAMRALPMGDRRGRPDIVHVFLLVALESVLNRVGQLR-VYIHTRNNEMITI 96
Query: 168 KPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLL-----RVIKNPVTQYLPVNSRKIG 222
P R+P+ Y RF G+M L +K S V +RE L+ R I + + + K+
Sbjct: 97 DPTTRIPKNYPRFVGLMESLFEKGS---VPEREPLIVMQRDRDIGACIGE---IPHEKVI 150
Query: 223 FSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDY---TDDLIAI 269
+ V++ +YV + DN +F++G G+ D DD I+I
Sbjct: 151 LLSPKGRRVRLSDYV---KECDNALFILGGFPKGEFISDVLSEADDTISI 197
>sp|C6A116|NEP1_THESM Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=nep1 PE=3 SV=1
Length = 220
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+S H L+ RPDIVH L++ L+S L K G+L+ VYV T + +K
Sbjct: 39 LLDSTYHHTALKSLKDGERRGRPDIVHLCLINALESILNKEGKLR-VYVHTRNNEVIYIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLP-VNSRKIGFSYSS 227
P RLPR Y RF G+M L + + K LLR+ +++ + + + + +
Sbjct: 98 PETRLPRNYNRFVGLMESLFKN---RVIPKDLALLRIENKTLSEIIGDIGPDAVFIMHEN 154
Query: 228 EKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARIC 284
L+ +++ +++ + +VG HG + I+I PL A + +
Sbjct: 155 GVLMSPQSFGRKLNEYISPAVIVGGFPHGDFLSVLEGEKISIYKEPLMAWSVVNEVL 211
>sp|Q96YP4|NEP1_SULTO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=nep1 PE=3 SV=1
Length = 219
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVH ALL L ++ G VY+ T G + V +R P+ Y RF G+ QLL
Sbjct: 61 RPDIVHLALLMFLTEKVPIKGE---VYIHTIDGKIIYVNSDMRPPKNYNRFIGLAEQLLL 117
Query: 190 KLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFV 249
+ + L++++ +T + KIG K VK + +N +
Sbjct: 118 HGQV-PINDANPLMKILNIKLTDL--KSKYKIGVLSEDGKKVKPEELC---NLGENWLLG 171
Query: 250 VGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARICEA 286
VGA HG + D+ +IS Y L + I RI A
Sbjct: 172 VGAFPHGDFSEEIKGVADEYFSISNYKLETHQVICRIISA 211
>sp|A3MWJ1|NEP1_PYRCJ Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=nep1 PE=3 SV=1
Length = 221
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL+ S L +AGR +A +V T + VKP R+P+ Y F +M QL +
Sbjct: 59 RPDIVHQVLLAFQYSLLNRAGRGRA-FVHTVGDYIISVKPETRVPKNYNNFVSLMEQLFK 117
>sp|O29524|NEP1_ARCFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=nep1 PE=1 SV=1
Length = 219
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL +LDS L R VYV T G + V RLPR Y RF G+M +L +
Sbjct: 61 RPDIVHQCLLLLLDSPL----RDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFE 116
Query: 190 KLSITA 195
+ ITA
Sbjct: 117 ERRITA 122
>sp|B1YD95|NEP1_PYRNV Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=nep1 PE=3 SV=1
Length = 221
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL S L + G L VY+ T + +VKP R+P+ Y F +M QL
Sbjct: 59 RPDIVHQVLLVFQYSLLNRRG-LGRVYIHTRGDYIIQVKPQTRIPKNYNNFVSLMEQL-- 115
Query: 190 KLSITAVGKR----EKLLRVIKNPVTQYL-PVNSRKIGFSYSSEKLVKMRNYVASISDDD 244
A+G+ + L+ + + + L + R + + R + +
Sbjct: 116 ----YALGRAPPHGDSLMELHRGSLAGLLEQLGGRWVVLHERGAR----RRFAELGAALL 167
Query: 245 NLVFVVGAMAHGKIDCDYT----DDLIAISGYPLSAARCIAR 282
N V VVG HG + + + ++ PL AA+ + R
Sbjct: 168 NSVVVVGGFPHGDFSNRWVLEKAEAVYSVGDEPLDAAQAVCR 209
>sp|A1RVH0|NEP1_PYRIL Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=nep1 PE=3
SV=1
Length = 221
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL S L K G L +Y+ T V+ R+P+ Y F +M QL
Sbjct: 59 RPDIVHQVLLVFQYSLLNKRG-LGRIYIHTQGDYTIYVRWETRIPKNYNNFVSLMEQLYA 117
Query: 190 KLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYS--SEKLVKMRNYVASISDDDNLV 247
+ G E L+ + K ++ L R++G + E VK + ++ + N V
Sbjct: 118 TGRVPPKG--EPLIELYKKDLSTLL----RELGGRWVVLHESGVK-KPFIELGAALLNSV 170
Query: 248 FVVGAMAHGKIDCDYT----DDLIAISGYPLSAARCIARICEALEDKWNLL 294
V+G HG + D + I + AA+ + R A E LL
Sbjct: 171 VVIGGFPHGDFTNKWVLEKADAIYKIGDETMDAAQVVYRAITAAEVAAGLL 221
>sp|Q8ZW45|NEP1_PYRAE Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=nep1 PE=3 SV=1
Length = 221
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL+ S L K G L Y+ T + V P R+P+ Y F ++ QL
Sbjct: 59 RPDIVHQVLLAFQYSLLAKRG-LGKAYIHTRDDYVIAVSPEARVPKNYNNFVALIEQLFA 117
Query: 190 KLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASI-SDDDNLVF 248
+ G E L+ + + + L +++G ++ R ++ + S+ V
Sbjct: 118 LGKVPPKG--EPLMELYRKDLATLL----QELGGVWAVFHESGARKPLSQMGSELLKSVV 171
Query: 249 VVGAMAHGKIDCDYTDDLIAISGYPLS-----AARCIARICEALEDKWNLL 294
VVG HG + + A+ Y L AA+ I + A E LL
Sbjct: 172 VVGGFPHGDFQNKWVVEKAAVV-YSLGEESLDAAQVICKAVTAAEVAAGLL 221
>sp|Q9HJ48|NEP1_THEAC Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=nep1 PE=3 SV=2
Length = 222
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI++ L +S L +L+ YV T + + P R+P++Y RF G+ L +
Sbjct: 62 RPDIIYLLLEMTQESILNHKNQLRT-YVHTRNNQVIRISPITRMPKSYNRFIGLFEDLFE 120
Query: 190 KLSITAVGK 198
K IT GK
Sbjct: 121 KRIITNNGK 129
>sp|Q979E4|NEP1_THEVO Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=nep1 PE=3 SV=1
Length = 222
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI++ L +S L + L+ Y+ T + ++ P R+P++Y RF G+ L +
Sbjct: 62 RPDIIYILLEMAQESILNRKNLLRT-YIHTRNDFVIKISPITRMPKSYNRFIGLFEDLFE 120
Query: 190 KLSITAVGK 198
K IT GK
Sbjct: 121 KEIITNNGK 129
>sp|A4WMI3|NEP1_PYRAR Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=nep1 PE=3
SV=1
Length = 221
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVHQALL S L G L +Y+ T + V P R+P+ Y F ++ QL
Sbjct: 59 RPDIVHQALLVFQYSLLAARG-LGRMYIHTLGDYVISVDPSTRVPKNYNNFVSLVEQLF 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,668,739
Number of Sequences: 539616
Number of extensions: 4917293
Number of successful extensions: 88173
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 848
Number of HSP's that attempted gapping in prelim test: 50332
Number of HSP's gapped (non-prelim): 22309
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)