Query 022653
Match_columns 294
No_of_seqs 133 out of 255
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oii_A Essential for mitotic g 100.0 1.4E-83 4.7E-88 590.8 20.9 212 81-294 34-253 (253)
2 3bbd_A Ribosome biogenesis pro 100.0 1.3E-75 4.5E-80 525.3 13.7 186 89-289 3-205 (205)
3 3o7b_A Ribosome biogenesis NEP 100.0 1.2E-74 4E-79 529.3 10.5 197 81-290 20-238 (244)
4 2qmm_A UPF0217 protein AF_1056 99.9 1.5E-27 5.2E-32 212.8 5.7 143 128-288 27-193 (197)
5 3aia_A UPF0217 protein MJ1640; 99.9 3.7E-25 1.3E-29 199.2 8.5 145 127-288 31-204 (211)
6 4fak_A Ribosomal RNA large sub 95.8 0.0047 1.6E-07 53.4 3.2 79 212-293 69-155 (163)
7 1o6d_A Hypothetical UPF0247 pr 95.0 0.025 8.6E-07 48.8 4.8 80 211-293 59-145 (163)
8 2qwv_A UPF0217 protein VC_A105 94.8 0.35 1.2E-05 43.4 11.8 154 126-287 30-201 (208)
9 1to0_A Hypothetical UPF0247 pr 94.2 0.051 1.7E-06 47.0 4.9 78 213-293 66-151 (167)
10 1ns5_A Hypothetical protein YB 93.0 0.034 1.2E-06 47.6 1.8 77 213-293 63-146 (155)
11 3ief_A TRNA (guanine-N(1)-)-me 59.0 6.9 0.00024 35.5 3.6 73 206-280 66-143 (233)
12 4h3z_A TRNA (guanine-N(1)-)-me 57.4 2.9 9.8E-05 38.9 0.8 59 217-277 106-166 (276)
13 1oy5_A TRNA (guanine-N(1)-)-me 55.9 8.6 0.00029 35.4 3.7 56 218-276 84-141 (257)
14 3ky7_A TRNA (guanine-N(1)-)-me 54.2 7 0.00024 36.2 2.8 57 218-276 104-162 (269)
15 3knu_A TRNA (guanine-N(1)-)-me 53.4 6.1 0.00021 36.3 2.2 57 218-276 102-160 (253)
16 1ual_A TRNA (guanine-N(1)-)-me 52.7 6.5 0.00022 36.5 2.3 58 218-277 102-161 (274)
17 2kw3_C Regulatory factor X-ass 47.5 12 0.00042 27.2 2.6 21 126-146 9-33 (62)
18 3quv_A TRNA (guanine-N(1)-)-me 45.6 12 0.00041 34.3 2.9 58 217-276 81-144 (246)
19 2vlg_A Sporulation kinase A; h 22.3 47 0.0016 24.9 2.4 17 155-171 12-28 (111)
20 2ejy_A 55 kDa erythrocyte memb 20.4 1.2E+02 0.0041 22.8 4.3 38 143-186 46-83 (97)
No 1
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=100.00 E-value=1.4e-83 Score=590.78 Aligned_cols=212 Identities=45% Similarity=0.855 Sum_probs=200.2
Q ss_pred CCCCCCCeEEEEEcCCccceeee------cCeeeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccE
Q 022653 81 DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQA 154 (294)
Q Consensus 81 ~~~~~~~~liiVL~~A~LEl~k~------gK~~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~ 154 (294)
..+++++||||||++|+||+++. |++|+|||+++|+++|++++++++||||||||||||+||||||||+|+||
T Consensus 34 ~~~~~~~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~- 112 (253)
T 3oii_A 34 SKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ- 112 (253)
T ss_dssp TTCCSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEE-
T ss_pred ccccCCceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceE-
Confidence 44467999999999999999884 56799999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCCeEEEEeccCccccchh
Q 022653 155 VYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMR 234 (294)
Q Consensus 155 VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~~~ 234 (294)
|||||.+|+||+|||++||||||+||+|||+|||++++|++.+++++||++++|||++|||+|+++|+||++ |+.+++.
T Consensus 113 VYIhT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~-g~~v~~~ 191 (253)
T 3oii_A 113 VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFD-APVIRVQ 191 (253)
T ss_dssp EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTT-SCBCCHH
T ss_pred EEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccC-CCccCHH
Confidence 999999999999999999999999999999999999999988788999999999999999999999999966 5689999
Q ss_pred HHhhhcCCCCCeEEEEccccCC--CCCCCCccceEEecCCCccHHHHHHHHHHHHHhhhcCC
Q 022653 235 NYVASISDDDNLVFVVGAMAHG--KIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL 294 (294)
Q Consensus 235 ~~~~~l~~~~~~vfvIGaf~hG--d~~~~~~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI~ 294 (294)
+|++.+.++.++|||||||||| +|+.+|+++.||||+||||||+||++||+|||++|||+
T Consensus 192 ~~~~~l~~~~~i~vvVGafahG~~~f~~~~~~e~iSIs~ypLsa~~~c~kic~a~E~~w~i~ 253 (253)
T 3oii_A 192 DYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 253 (253)
T ss_dssp HHHHTSCTTCEEEEEEECSSSCCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcccCCCeEEEEeeeCCCCCcccchhcceeEEEeCCChhHHHHHHHHHHHHHHHhCcC
Confidence 9999998888999999999999 68899999999999999999999999999999999996
No 2
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=100.00 E-value=1.3e-75 Score=525.25 Aligned_cols=186 Identities=27% Similarity=0.466 Sum_probs=177.0
Q ss_pred EEEEEcCCcccee--------eecC--eeeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEE
Q 022653 89 VIFVLEKASLEVA--------KVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVR 158 (294)
Q Consensus 89 liiVL~~A~LEl~--------k~gK--~~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIh 158 (294)
++|||++|+||++ |+|| +|+|||+|+|+++|++++++++||||||||||||+||||||||+|+|| ||||
T Consensus 3 l~vvL~~a~LE~vP~ei~~a~k~gk~p~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~llDSpLNk~G~L~-VYIh 81 (205)
T 3bbd_A 3 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLN-IYIH 81 (205)
T ss_dssp EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEE-EEEE
T ss_pred EEEEECCCccccChhhhhhhHhcCCCCcceecchHHHHHHHHhcccchhccCCcHHHHHHHHHhcChHHHCCCeE-EEEE
Confidence 7899999999999 9999 599999999999999999999999999999999999999999999999 9999
Q ss_pred ecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCC--CeEEEEeccCccccchhHH
Q 022653 159 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--SRKIGFSYSSEKLVKMRNY 236 (294)
Q Consensus 159 T~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~--~~~I~LS~~~gk~v~~~~~ 236 (294)
|.+|+||+|||++||||||+||+|||+|||++++ ++||+|++|||++|||.| +++|+||+. |+.+++.+|
T Consensus 82 T~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~-------~~Llkvik~~l~~~lp~~~~~~~i~ls~~-g~~v~~~~~ 153 (205)
T 3bbd_A 82 TYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER-------NHLIKMEEKTLEDLLNEINAKKIAIMTKT-GKLTHPKLL 153 (205)
T ss_dssp ETTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCC-------CSSEEEEECCHHHHHHHTTCCEEEEEEEE-EEECCGGGG
T ss_pred ecCCEEEEECCCCCCCCCHHHHHHHHHHHHHhCc-------hhheEEEcCCHHHhcCCCCCceEEEEcCC-CcccCHHHH
Confidence 9999999999999999999999999999999997 589999999999999987 999999954 678999999
Q ss_pred hhhcCCCCCeEEEEccccCCCCCCC---Cccce--EEecCCCccHHHHHHHHHHHHHh
Q 022653 237 VASISDDDNLVFVVGAMAHGKIDCD---YTDDL--IAISGYPLSAARCIARICEALED 289 (294)
Q Consensus 237 ~~~l~~~~~~vfvIGaf~hGd~~~~---~~~e~--iSIS~ypLsAa~vcsrI~~a~E~ 289 (294)
+ . +. ||+|||||||+|+.+ |+++. ||||+||||||+||||||++||.
T Consensus 154 ~-~---~~--~~~IGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v~~ri~~~~~~ 205 (205)
T 3bbd_A 154 K-E---YD--TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF 205 (205)
T ss_dssp G-G---CS--EEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHHHHHHHHHHHC
T ss_pred h-C---CC--EEEEccccCCCcchhhhhhhccccEEEEeCCChhHHHHHHHHHHHhhC
Confidence 8 2 22 999999999999988 89999 99999999999999999999983
No 3
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-74 Score=529.28 Aligned_cols=197 Identities=26% Similarity=0.360 Sum_probs=180.0
Q ss_pred CCCCCCCeEEEEEcCCcccee---------------eecCe--eeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhc
Q 022653 81 DQNTKRPGVIFVLEKASLEVA---------------KVGKS--YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILD 143 (294)
Q Consensus 81 ~~~~~~~~liiVL~~A~LEl~---------------k~gK~--~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLD 143 (294)
..+-+++||+|||++|+||++ |+||+ |+|||+++||++|++++++++||||||||||||+|||
T Consensus 20 ~~~~~~~~l~vVL~ea~LElvp~ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~~amkkl~~~~krgRPDIvHq~LL~llD 99 (244)
T 3o7b_A 20 NLYFQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLD 99 (244)
T ss_dssp ------CCEEEEEEEESCCBCCGGGTTSHHHHHHHHHHTSCGGGSBCCHHHHGGGCTTCTTGGGCSCHHHHHHHHHHHHT
T ss_pred cceecCcEEEEEECCCcccccchhhccCcchhhhhhhcCCCccccccchHHHHHHHHHCCChhhccCccHHHHHHHHHhh
Confidence 344578999999999999995 46777 9999999999999999999999999999999999999
Q ss_pred chhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCCeEEEE
Q 022653 144 SRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGF 223 (294)
Q Consensus 144 SPLNKaG~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~~~I~L 223 (294)
||||| || |||||.+|+||+|||++||||||+||+|||+|||++++|++ ++++||+|++|||++|||.+ ++|+|
T Consensus 100 SpLNk---L~-VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~--~~~~LLkvik~~l~~~lp~~-~~I~l 172 (244)
T 3o7b_A 100 SPLRD---FE-VYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITA--GDTTLIEFKDVGLRDIVRGR-DVLLF 172 (244)
T ss_dssp CSCCS---EE-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEE--TTEEEEEEESSCHHHHTTTS-EEEEE
T ss_pred Chhhh---eE-EEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCC--CCCeeEEEEcCCHHHhcCCC-cEEEE
Confidence 99998 99 99999999999999999999999999999999999999999 45899999999999999998 99999
Q ss_pred eccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCCCc-----cceEEecCCCccHHHHHHHHHHHHHhh
Q 022653 224 SYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYT-----DDLIAISGYPLSAARCIARICEALEDK 290 (294)
Q Consensus 224 S~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~~~-----~e~iSIS~ypLsAa~vcsrI~~a~E~~ 290 (294)
|+ .|+.+++.+|++.+. ||+|||||||||+.+|. ++.||||+||||||+||||||++||+.
T Consensus 173 S~-~G~~v~~~~~~~~~~-----~~vIGafphGdf~~~~~~~~~~~~~iSIs~~pLsa~~v~~ri~~a~E~~ 238 (244)
T 3o7b_A 173 RE-KGGRFEFSELLDGDV-----AVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERV 238 (244)
T ss_dssp EE-EEECCCHHHHTSSSE-----EEEEECSSSSCCCHHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred cc-CCCcCCHHHHhhcCC-----EEEECcccCCCccHhhhhhccCccEEEEeCCChHHHHHHHHHHHHHHHh
Confidence 94 577899999986653 89999999999998874 678999999999999999999999986
No 4
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=99.94 E-value=1.5e-27 Score=212.77 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=128.0
Q ss_pred CCCCcHHHHHHHHhhcchhhhcCCccEEEEEecC------------CeEEEEcCCCCCCCChhHHHHHHHHHHHc--Ccc
Q 022653 128 DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDK------------GVLFEVKPHVRLPRTYKRFAGIMLQLLQK--LSI 193 (294)
Q Consensus 128 ~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~------------~~lIeVsP~~RIPRty~RF~GLM~qLL~k--~~I 193 (294)
+|||||+|+||+++|.|++|..|.++ |||||.+ +.|++|+|+.| ||.|||+|+|.+ +++
T Consensus 27 ~GR~DIl~r~l~~al~~s~~~R~dv~-vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR------~~~gli~kaL~~~~~~~ 99 (197)
T 2qmm_A 27 AGRMDVLCRCTSQALFISHGIRRDVE-VYLLLLGPPSPPKSILIKGDEVRRMSPDER------NVAGHIKKALAVECGKS 99 (197)
T ss_dssp TTSHHHHHHHHHHHHEETTEECTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHSCCCSS
T ss_pred CCCceeHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCCeeEEecCCeEEEcChhHH------HHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999 9999999 99999999999 999999999999 888
Q ss_pred ccCCCCcceEEEEeccccccccC-C--CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCC-------Cc
Q 022653 194 TAVGKREKLLRVIKNPVTQYLPV-N--SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCD-------YT 263 (294)
Q Consensus 194 ~~~~~~~~LLkviknpl~~~Lp~-~--~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~-------~~ 263 (294)
++. .+++++|.+.++++++.. + .++|.|+ +.|+.+...++ ..++||++|+ ||+|..+ .+
T Consensus 100 ~~~--~~pgi~v~~~sle~ll~e~~~~~~v~~L~-E~G~~i~~~~~------~~~~~fvlGd--H~~f~~e~~~~l~~~~ 168 (197)
T 2qmm_A 100 WKK--VHSGVYVSRKGLEELIEELSEKYSIIYLK-EDGVDISNAQL------PPNPLFVIGD--HEGLTEEQEKVVERYA 168 (197)
T ss_dssp CEE--EETTEEEECCCHHHHHHHHHHHSEEEEEE-EEEEEGGGSCC------CSSEEEEEEC--TTCCCHHHHHHHHTTC
T ss_pred cCC--CCCCEEEECCCHHHHHHHhhcCCcEEEEc-CCCCCCchhhc------CCCCEEEEeC--CCCCCHHHHHHHHHhc
Confidence 764 479999999999999985 2 5689999 77877665554 2467999999 9999876 47
Q ss_pred cceEEecCCCccHHHHHHHHHHHHH
Q 022653 264 DDLIAISGYPLSAARCIARICEALE 288 (294)
Q Consensus 264 ~e~iSIS~ypLsAa~vcsrI~~a~E 288 (294)
++.|||+..+|.||+|+++|-+.+-
T Consensus 169 ~~~iSigp~~L~A~~vi~~vh~~ld 193 (197)
T 2qmm_A 169 ALKLSLSPLSLLAEQCVVIAHHHLD 193 (197)
T ss_dssp SEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred CeEEEECCchhHHHHHHHHHHHHHh
Confidence 7999999999999999999988773
No 5
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=99.91 E-value=3.7e-25 Score=199.20 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=126.8
Q ss_pred CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEE--------EcCCCCCCCChhHHHHHHHHHHHcCc--
Q 022653 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFE--------VKPHVRLPRTYKRFAGIMLQLLQKLS-- 192 (294)
Q Consensus 127 k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~----~lIe--------VsP~~RIPRty~RF~GLM~qLL~k~~-- 192 (294)
.+|||||+|+||+++|.|++|..|.++ ||+||.++ ++|+ |||+.| ||.|||+|+|++++
T Consensus 31 ~~GR~DIl~r~l~~Al~~s~~~R~dv~-vyl~l~~~p~p~~~I~f~g~~lr~v~PdeR------s~~~li~kaL~~~~~~ 103 (211)
T 3aia_A 31 SCGRLDLLCRCVSDAFFLSHDIRRDVV-FYAVLYGQPNPPVCIKFVGSELKKVSPDER------NIAIFIKKALKKFEEL 103 (211)
T ss_dssp TTTSHHHHHHHHHHHHBCSSSBCTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHHHHHS
T ss_pred CCCCeehHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCceEEEEcCccccccChhHH------HHHHHHHHHHHhcccc
Confidence 699999999999999999999999999 99999999 9999 999999 99999999999976
Q ss_pred ---cccCC-CCcceEEEEeccccccccC---CC-eEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCC---
Q 022653 193 ---ITAVG-KREKLLRVIKNPVTQYLPV---NS-RKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCD--- 261 (294)
Q Consensus 193 ---I~~~~-~~~~LLkviknpl~~~Lp~---~~-~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~--- 261 (294)
+++.. +.+++++|.+.+++++|.. .. ++|.|+ +.|+.+...++ .++||++|+ ||+|..+
T Consensus 104 ~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~~v~~L~-E~G~~i~~~~~-------~~~~fvlGd--H~~f~~e~~~ 173 (211)
T 3aia_A 104 DEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLH-MNGEDVENVDI-------ENPVFIIGD--HIGIGEEDER 173 (211)
T ss_dssp CTTGGGSCEEEETTEEEECCCHHHHHHHHHHTTCEEEEEE-EEEEEGGGCCC-------CSEEEEEEC--SSCSCHHHHH
T ss_pred cccCCcccccCCCCeEEEcCCHHHHHHHHhhcCCcEEEEc-CCCCCCccccc-------CCcEEEEEC--CCCCCHHHHH
Confidence 76511 2369999999999999974 24 689999 77876665544 467999999 9999876
Q ss_pred ----CccceEEecCCCccHHHHHHHHHHHHH
Q 022653 262 ----YTDDLIAISGYPLSAARCIARICEALE 288 (294)
Q Consensus 262 ----~~~e~iSIS~ypLsAa~vcsrI~~a~E 288 (294)
.+.+.|||+..+|.||+|+++|-+.+-
T Consensus 174 ~L~~~~~~~iSigp~~L~A~hvi~~vh~~LD 204 (211)
T 3aia_A 174 FLDEIKAKRISLSPLELHANHCITIIHNVLD 204 (211)
T ss_dssp HHHHTTCEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHhhCCeEEEECCcchHHHHHHHHHHHHhc
Confidence 367899999999999999999988773
No 6
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=95.83 E-value=0.0047 Score=53.40 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=58.1
Q ss_pred ccccCCCeEEEEeccCccccchhHHhhhcCC-----CCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHHH
Q 022653 212 QYLPVNSRKIGFSYSSEKLVKMRNYVASISD-----DDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARI 283 (294)
Q Consensus 212 ~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~-----~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsrI 283 (294)
..+++++.+|+|+ ..|+..+-.+|...+.. ...++|+||| |.|- +.+. ++..+|+|.-.++-..+---+
T Consensus 69 ~~i~~~~~vI~LD-~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl-~~~v~~rA~~~lSlS~mTfpHqL~RliL 145 (163)
T 4fak_A 69 AKIKPQSTVITLE-IQGKMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGL-HKDVLQRSNYALSFSKMTFPHQMMRVVL 145 (163)
T ss_dssp HTCCTTSEEEEEE-EEEEECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBC-CHHHHHHCSEEEESCSSCCCHHHHHHHH
T ss_pred HhCCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCcceEEEEEC-CCcc-CHHHHHhcCceEEEecCCCCHHHHHHHH
Confidence 4566678999999 66888887777765532 3579999999 8884 3332 788999999988887776666
Q ss_pred HHHHHhhhcC
Q 022653 284 CEALEDKWNL 293 (294)
Q Consensus 284 ~~a~E~~wgI 293 (294)
+.-+...|.|
T Consensus 146 ~EQlYRA~tI 155 (163)
T 4fak_A 146 IEQVYRAFKI 155 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 7
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=94.96 E-value=0.025 Score=48.82 Aligned_cols=80 Identities=10% Similarity=0.210 Sum_probs=57.0
Q ss_pred cccccCCCeEEEEeccCccccchhHHhhhcCC----CCCeEEEEccccCCCCCCC---CccceEEecCCCccHHHHHHHH
Q 022653 211 TQYLPVNSRKIGFSYSSEKLVKMRNYVASISD----DDNLVFVVGAMAHGKIDCD---YTDDLIAISGYPLSAARCIARI 283 (294)
Q Consensus 211 ~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~----~~~~vfvIGaf~hGd~~~~---~~~e~iSIS~ypLsAa~vcsrI 283 (294)
...+|++..+|+|+ +.|+..+-.+|.+.+.+ ...++|+||+ |.|- +.+ -++..+|+|.-.++-..+=--+
T Consensus 59 l~~i~~~~~vI~LD-~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl-~~~v~~rAd~~lSlS~mTfpHqL~RliL 135 (163)
T 1o6d_A 59 TNRILPGSFVMVMD-KRGEEVSSEEFADFLKDLEMKGKDITILIGG-PYGL-NEEIFAKAHRVFSLSKMTFTHGMTVLIV 135 (163)
T ss_dssp HTTCCTTCEEEEEE-EEEEECCHHHHHHHHHHHHHHTCCEEEEECC-TTCC-CGGGGGGCSEEEECCSSCCCHHHHHHHH
T ss_pred HHhcCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC-CHHHHHhhCceEEccCCCCcHHHHHHHH
Confidence 34455555689999 67888888888765532 2579999998 7774 333 2788999999888887776666
Q ss_pred HHHHHhhhcC
Q 022653 284 CEALEDKWNL 293 (294)
Q Consensus 284 ~~a~E~~wgI 293 (294)
+.-+...|-|
T Consensus 136 ~EQiYRA~tI 145 (163)
T 1o6d_A 136 LEQIFRAFKI 145 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 8
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=94.76 E-value=0.35 Score=43.39 Aligned_cols=154 Identities=10% Similarity=0.092 Sum_probs=94.6
Q ss_pred CCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEEEc-CCCCCC--CChhHHHHHHHHHHHcCccccCCC
Q 022653 126 PADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFEVK-PHVRLP--RTYKRFAGIMLQLLQKLSITAVGK 198 (294)
Q Consensus 126 ~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~----~lIeVs-P~~RIP--Rty~RF~GLM~qLL~k~~I~~~~~ 198 (294)
-..||.||+=.|+.++|=--=.-..-.. ||+.-.++ +.|.+. ..+|-= -.-..+.+++..-|.++.....+.
T Consensus 30 G~~GR~DvLcR~v~sAlflSh~iR~Dv~-v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~ 108 (208)
T 2qwv_A 30 GGKCHTEILAHCMMNSLFTAQSHREDVV-IHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQ 108 (208)
T ss_dssp TSSSCTHHHHHHHHHHHBCSSSBCSSEE-EEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTC
T ss_pred CccCceehHHHHHHHHHHHhccccCCeE-EEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhcccccccc
Confidence 4579999999999977621111122346 78776554 445433 344431 134568888888888854322111
Q ss_pred ---CcceEEEEeccccccccC---CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEc---cccCCC--CCCCCccceE
Q 022653 199 ---REKLLRVIKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVG---AMAHGK--IDCDYTDDLI 267 (294)
Q Consensus 199 ---~~~LLkviknpl~~~Lp~---~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIG---af~hGd--~~~~~~~e~i 267 (294)
..+=+.|-+.++++++.. ....+-|+ +.|+.+ .++ .-..+.||+.| +|+..+ +-.....+.|
T Consensus 109 ~~~~~pGi~v~~~~fe~ll~e~~~~~~ly~L~-e~G~di--~~~----~~~~~~~FvLgDH~g~~~eee~~L~~~~~~~i 181 (208)
T 2qwv_A 109 TRVVQPGLTVRTISFEALLGELAEHHSLYMMD-KKGDSI--RDI----KIGPNPCFILTDHIPMPKKSGNSMKRLGVEKI 181 (208)
T ss_dssp EEEEETTEEEECCCHHHHHHHHHTTSEEEEEE-EEEEET--TTS----CCCSSEEEEECC----------CTTTTTCEEE
T ss_pred ccccCCCEEEecCCHHHHHHHHHhcCcEEEEe-CCCcCH--hhc----cCCCCCEEEEcCCCCCCHHHHHHHHhcCCeEE
Confidence 122367788899998874 24688899 667643 332 11256799998 233332 1122466899
Q ss_pred EecCCCccHHHHHHHHHHHH
Q 022653 268 AISGYPLSAARCIARICEAL 287 (294)
Q Consensus 268 SIS~ypLsAa~vcsrI~~a~ 287 (294)
||+..+|-|++|+.=|-+.+
T Consensus 182 SlGP~~l~A~hcI~~vhn~L 201 (208)
T 2qwv_A 182 SLGPKMLFASQCVTLIHNEI 201 (208)
T ss_dssp ECCSSCCCHHHHHHHHHHHH
T ss_pred EeCchHHHHHHHHHHHHHHH
Confidence 99999999999998887766
No 9
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=94.15 E-value=0.051 Score=47.01 Aligned_cols=78 Identities=13% Similarity=0.247 Sum_probs=55.3
Q ss_pred cccCCCeEEEEeccCccccchhHHhhhcCC----C-CCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHHHH
Q 022653 213 YLPVNSRKIGFSYSSEKLVKMRNYVASISD----D-DNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARIC 284 (294)
Q Consensus 213 ~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~----~-~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsrI~ 284 (294)
.++++..+|+|+ ..|+..+-.+|...+.+ . ..++|+||| |.|- +.+. ++..+|+|.-.++-..+=--++
T Consensus 66 ~i~~~~~vI~LD-~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl-~~~v~~rA~~~lSlS~mTfpHqL~RliL~ 142 (167)
T 1to0_A 66 KISPDAHVIALA-IEGKMKTSEELADTIDKLATYGKSKVTFVIGG-SLGL-SDTVMKRADEKLSFSKMTFPHQLMRLILV 142 (167)
T ss_dssp TSCTTSEEEEEE-EEEEECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCC-CHHHHHHCSEEEESCSSCCCHHHHHHHHH
T ss_pred hcCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCC-CHHHHHhhCcEEEccCCCCcHHHHHHHHH
Confidence 455556689999 67888887777755432 2 569999998 7774 3332 7889999998888877766666
Q ss_pred HHHHhhhcC
Q 022653 285 EALEDKWNL 293 (294)
Q Consensus 285 ~a~E~~wgI 293 (294)
.-+...|-|
T Consensus 143 EQiYRA~tI 151 (167)
T 1to0_A 143 EQIYRAFRI 151 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
No 10
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=93.03 E-value=0.034 Score=47.56 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=54.5
Q ss_pred cccCCCeEEEEeccCccccchhHHhhhcCC----CCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHHHHH
Q 022653 213 YLPVNSRKIGFSYSSEKLVKMRNYVASISD----DDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARICE 285 (294)
Q Consensus 213 ~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~----~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsrI~~ 285 (294)
.++.+ .+|+|+ ..|+..+-.+|...+.+ ...++|+||| |.|- +.+. ++..+|+|.-.++-..+=--++.
T Consensus 63 ~i~~~-~vi~Ld-~~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl-~~~v~~rA~~~lSlS~mT~pHql~RliL~E 138 (155)
T 1ns5_A 63 AAGKN-RIVTLD-IPGKPWDTPQLAAELERWKLDGRDVSLLIGG-PEGL-SPACKAAAEQSWSLSALTLPHPLVRVLVAE 138 (155)
T ss_dssp HHTTS-EEEEEE-EEEECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBC-CHHHHHHCSEEECCCSSCCCHHHHHHHHHH
T ss_pred hcCCC-cEEEEc-CCCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC-CHHHHHhhCceEEccCCCCcHHHHHHHHHH
Confidence 44544 689999 67888888887765532 2579999998 7774 2222 78899999988888777666666
Q ss_pred HHHhhhcC
Q 022653 286 ALEDKWNL 293 (294)
Q Consensus 286 a~E~~wgI 293 (294)
-+...|-|
T Consensus 139 QiYRA~~I 146 (155)
T 1ns5_A 139 SLYRAWSI 146 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 11
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=59.05 E-value=6.9 Score=35.55 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=46.4
Q ss_pred EeccccccccC---CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHHHHH
Q 022653 206 IKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAARCI 280 (294)
Q Consensus 206 iknpl~~~Lp~---~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa~vc 280 (294)
...||.+-+.. ..++|.|| ..|+..+ ...+..+.....++|+-|-+--=| +-+.++++.|||.+|-||.--..
T Consensus 66 ~~ePl~~al~~~~~~~~vI~ls-P~G~~f~-Q~~a~eLa~~~~lillCGrYEGiDeRv~~~~vdeEiSIGDyVLtGGEla 143 (233)
T 3ief_A 66 RADVLAAALDSCPNDSPRLLMS-PRGRLLN-QAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETA 143 (233)
T ss_dssp CHHHHHHHHTTSCCCSCEEEEE-EEEEECC-HHHHHHHTTSSEEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHHH
T ss_pred eHHHHHHHHHHhhcCCCEEEEC-CCCCccC-HHHHHHHHCCCCEEEEecccccHHHHHHHhhCceEeeeccEEeeCchHH
Confidence 34555555442 25689999 5576554 455667777777777766443222 22336899999999999964443
No 12
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=57.44 E-value=2.9 Score=38.95 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=38.7
Q ss_pred CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHH
Q 022653 217 NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAA 277 (294)
Q Consensus 217 ~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa 277 (294)
++++|.|| ..|+..+ ...+..+.....++|+-|-+--=| +-+.++++.|||.+|-||.-
T Consensus 106 ~~~vI~ls-P~G~~f~-Q~~a~~La~~~~liliCGrYEGiDeRvie~~vdeEiSIGDyVLsGG 166 (276)
T 4h3z_A 106 GARVVMMS-PQGATLN-HDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGG 166 (276)
T ss_dssp SCEEEEEE-EEEEECC-HHHHHHHHTSSEEEEECCCSSEECHHHHHHHCCEEEESSSSCCSCS
T ss_pred CceEEEEC-CCCCeee-hHHHHHhhccCCEEEEeccccchhHHHHhccCCeEEEecCEEeeCc
Confidence 36889999 5577654 345566666667777654332212 22346899999999999853
No 13
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Probab=55.95 E-value=8.6 Score=35.42 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=39.0
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccH
Q 022653 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSA 276 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsA 276 (294)
.++|.|| ..|+..+ ...+..+.....++|+-|-+--=| +-+ ++++.|||.+|-||.
T Consensus 84 ~~vI~ls-P~G~~f~-Q~~a~eLa~~~~lillCGrYEGiDeRv~e-~vdeEiSIGDyVLtG 141 (257)
T 1oy5_A 84 PFVLITE-PWGEKLN-QKLVNELSKKERIMIICGRYEGVDERVKK-IVDMEISLGDFILSG 141 (257)
T ss_dssp CEEEEEC-TTBCCCC-HHHHHHHHTCSEEEEEECBTTCBCGGGGG-GCCEECCBCSSCCSB
T ss_pred CeEEEEC-CCCCcCC-HHHHHHHhCCCCEEEEeccccchhHHHHh-hcceEeecccEEecC
Confidence 4689999 5677554 345566666677777766553333 333 889999999999984
No 14
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=54.19 E-value=7 Score=36.22 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=38.4
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccH
Q 022653 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSA 276 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsA 276 (294)
.++|.|| ..|+..+ ...+..+.....++|+-|-+--=| +-+.++++.|||.+|-||.
T Consensus 104 ~~vI~ls-P~G~~f~-Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtG 162 (269)
T 3ky7_A 104 ARVILMC-PQGEPFS-HQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTG 162 (269)
T ss_dssp SEEEEEE-EEEEECC-HHHHHHHTTCSEEEEECCCCSCBCHHHHHHTCCEEEESSSSCCSC
T ss_pred CcEEEEC-CCCCccC-HHHHHHHHCCCCEEEEecccccHHHHHHHhhCcEEeeeccEEeeC
Confidence 5789999 5576554 455667776677777655432112 2233689999999999995
No 15
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} PDB: 4ig6_A*
Probab=53.36 E-value=6.1 Score=36.32 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=38.6
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccH
Q 022653 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSA 276 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsA 276 (294)
.++|.|| ..|+..+ ...+..|.....++|+-|-+--=| +-+.++++.|||.+|-||.
T Consensus 102 ~~vI~ls-P~G~~f~-Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtG 160 (253)
T 3knu_A 102 TKLMFTS-PRGVSFT-QDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSG 160 (253)
T ss_dssp CEEEEEE-EEEEECC-HHHHHHHHTCSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSS
T ss_pred CcEEEEC-CCCCccC-HHHHHHHhCCCCEEEEecccccHHHHHHHhhCceEeeeccEEeeC
Confidence 5789999 5576554 345666666677777766443222 2233689999999999995
No 16
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A*
Probab=52.74 E-value=6.5 Score=36.54 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=38.4
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHH
Q 022653 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAA 277 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa 277 (294)
.++|.|| ..|+..+ ...+..|.....++|+-|-+--=| +-+.++++.|||.+|-||.-
T Consensus 102 ~~vI~ls-P~G~~f~-Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGG 161 (274)
T 1ual_A 102 AKVIYLS-PQGRKLD-QGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGG 161 (274)
T ss_dssp CEEEEEE-EEEEECC-HHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCS
T ss_pred CeEEEEC-CCCCcCC-HHHHHHHHCCCCEEEEeccccchHHHHHhhcCcEEEecccEEecCc
Confidence 3789999 5577554 345667766667777655432222 22336899999999999853
No 17
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=47.54 E-value=12 Score=27.25 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHH----HHhhcchh
Q 022653 126 PADYRPDIVHQAL----LSILDSRL 146 (294)
Q Consensus 126 ~k~gRPDIvHq~L----L~LLDSPL 146 (294)
.+-.||||+|+.| ++||-||-
T Consensus 9 d~~~rp~l~eqVLNqKk~SLLRsPE 33 (62)
T 2kw3_C 9 DRPARPTLLEQVLNQKRLSLLRSPE 33 (62)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCCCccHHHHHHHHHHHHHhcCHH
Confidence 3578999999998 77888873
No 18
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus}
Probab=45.62 E-value=12 Score=34.27 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=39.6
Q ss_pred CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCC----CCccceEEecCCCccH
Q 022653 217 NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDC----DYTDDLIAISGYPLSA 276 (294)
Q Consensus 217 ~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~----~~~~e~iSIS~ypLsA 276 (294)
..++|.|| ..|+..+ ...+..|.....++|+-|-+--=| +-+ .++++.|||.+|-||.
T Consensus 81 ~~~vI~ls-P~G~~f~-Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~~~~~vdeEiSIGDyVLtG 144 (246)
T 3quv_A 81 ETLLVVPT-PAGYPFT-QETAWQWSTEDHLVIACGRYEGIDQRVADDAATRMRVREVSIGDYVLNG 144 (246)
T ss_dssp TCEEEEEE-EEEEECC-HHHHHHHTTCSEEEEECCBTTCBCHHHHHHHTTTSEEEEEESSSSCCSB
T ss_pred CCcEEEEC-CCCCccC-HHHHHHHhCCCCEEEEeccccchhHHHHhccccccceEEEeeccEEeeC
Confidence 35789999 5576554 455667776677777755443223 223 4789999999999995
No 19
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=22.33 E-value=47 Score=24.92 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=15.3
Q ss_pred EEEEecCCeEEEEcCCC
Q 022653 155 VYVRTDKGVLFEVKPHV 171 (294)
Q Consensus 155 VYIhT~~~~lIeVsP~~ 171 (294)
|++.+.+|.+++|||.+
T Consensus 12 i~v~d~~G~i~yvn~~~ 28 (111)
T 2vlg_A 12 HAVLASNGRIIYISANS 28 (111)
T ss_dssp EEEECTTSBEEEECTTH
T ss_pred EEEEcCCCeEEEEChHH
Confidence 89999999999999863
No 20
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=20.42 E-value=1.2e+02 Score=22.78 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=29.1
Q ss_pred cchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHH
Q 022653 143 DSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186 (294)
Q Consensus 143 DSPLNKaG~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~q 186 (294)
+||.-++|+|+ ..+++++||-.----.|+..|..++..
T Consensus 46 gspA~~aG~L~------~GD~Il~ING~~v~~~~~~~~~~~l~~ 83 (97)
T 2ejy_A 46 GGMIHRQGSLH------VGDEILEINGTNVTNHSVDQLQKAMKE 83 (97)
T ss_dssp SSHHHHHTCCC------TTCEEEEETTBCCCSSCSHHHHHHHHH
T ss_pred CCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 69999999999 899999999653322368888776653
Done!