Query 022653
Match_columns 294
No_of_seqs 133 out of 255
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 08:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v3ka1 c.116.1.6 (A:25-251) E 100.0 5.4E-82 3.9E-86 571.9 21.9 213 79-293 7-227 (227)
2 d3bbda1 c.116.1.6 (A:2-205) Ri 100.0 8E-70 5.8E-74 485.4 13.2 186 89-288 2-203 (204)
3 d1o6da_ c.116.1.3 (A:) Hypothe 95.4 0.01 7.4E-07 47.7 5.5 82 210-293 56-143 (147)
4 d1to0a_ c.116.1.3 (A:) Hypothe 95.0 0.012 8.8E-07 47.5 4.9 80 211-293 64-151 (157)
5 d1vh0a_ c.116.1.3 (A:) Hypothe 94.5 0.013 9.8E-07 47.2 4.0 81 210-293 63-151 (157)
6 d2qwva1 c.116.1.7 (A:5-205) Un 92.9 0.55 4E-05 39.6 11.7 151 127-288 24-195 (201)
7 d2qmma1 c.116.1.7 (A:95-288) U 88.8 2.7 0.0002 34.9 12.0 150 126-288 22-190 (194)
8 d1ns5a_ c.116.1.3 (A:) Hypothe 86.5 0.2 1.4E-05 39.9 3.1 77 213-293 63-146 (153)
9 d1uala_ c.116.1.4 (A:) tRNA(m1 73.1 0.79 5.8E-05 40.0 2.5 62 217-280 83-146 (252)
10 d1oy5a_ c.116.1.4 (A:) tRNA(m1 48.6 6.5 0.00047 33.5 3.8 57 218-277 81-139 (232)
11 d1p97a_ d.110.3.7 (A:) Hypoxia 45.4 2.1 0.00016 30.0 0.1 24 141-171 2-25 (114)
12 d1v6za2 c.116.1.5 (A:67-228) H 37.8 36 0.0027 26.2 6.6 101 177-292 52-161 (162)
13 d1nxza2 c.116.1.5 (A:74-247) H 29.6 34 0.0025 26.6 5.1 104 176-292 54-168 (174)
14 d2o3aa1 c.116.1.8 (A:1-167) Un 22.2 30 0.0022 27.9 3.3 68 217-287 73-140 (167)
15 d1qaua_ b.36.1.1 (A:) Neuronal 21.0 43 0.0032 23.6 3.8 36 143-184 36-71 (112)
No 1
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=100.00 E-value=5.4e-82 Score=571.86 Aligned_cols=213 Identities=45% Similarity=0.848 Sum_probs=200.1
Q ss_pred CCCCCCCCCeEEEEEcCCccceeee------cCeeeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCc
Q 022653 79 PSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRL 152 (294)
Q Consensus 79 ~~~~~~~~~~liiVL~~A~LEl~k~------gK~~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L 152 (294)
....+++++||+|||++|+||++|. |++|+|||+|+|+++|++++++++||||||||||||+|||||||++|+|
T Consensus 7 ~~~~~~~~~~l~~vL~~a~Le~~k~~~~~~~~~~~~LL~~~~H~~~m~~~~~~~~~~RPDIvH~~LL~l~dSpLnk~g~L 86 (227)
T d2v3ka1 7 LTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKL 86 (227)
T ss_dssp CCTTCSSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCE
T ss_pred CCccCCCCceEEEEECCCcceeeeeccccCCCCccEecccHHHHHHHHHcCCcccccCcCHHHHHHHHHhcChhhhcCce
Confidence 3455577899999999999999886 4559999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCCeEEEEeccCccccc
Q 022653 153 QAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVK 232 (294)
Q Consensus 153 ~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~ 232 (294)
| |||||.+|+||+|||++||||||+||+|||+|||++++|++++++++||++++||+++++|.|+++|+||+ .|+.++
T Consensus 87 ~-VyihT~~~~lI~V~p~~RvPrty~rF~gLm~qLl~~~~i~~~~~~~~Ll~vikn~Itd~lp~~~k~I~LS~-~G~~~~ 164 (227)
T d2v3ka1 87 Q-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF-DAPVIR 164 (227)
T ss_dssp E-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEECTTTCSEEEEEECSCGGGTSCSSEEEEEECT-TSCBCC
T ss_pred E-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccccCCCccceeeeeccccccccCCCCeEEEECC-CCCccC
Confidence 9 99999999999999999999999999999999999999999888999999999999999999999999995 467799
Q ss_pred hhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHHHHHHHHHHHHHhhhcC
Q 022653 233 MRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAARCIARICEALEDKWNL 293 (294)
Q Consensus 233 ~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI 293 (294)
+.++++.++++.++||+|||||||| +..+|+++.||||+||||||+||||||++||++|||
T Consensus 165 ~~~l~~~l~~~~~v~~viG~f~~GD~~~~~~yide~ISIsdypLSa~~v~sri~~~~E~~~~i 227 (227)
T d2v3ka1 165 VQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 227 (227)
T ss_dssp HHHHHHTSCTTCEEEEEEECSSSSCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCEEEEEeeecCCCccccccccceEEEEeCcchhHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999 445799999999999999999999999999999997
No 2
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=8e-70 Score=485.45 Aligned_cols=186 Identities=28% Similarity=0.494 Sum_probs=168.2
Q ss_pred EEEEEcCCcccee--------eecCe--eeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEE
Q 022653 89 VIFVLEKASLEVA--------KVGKS--YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVR 158 (294)
Q Consensus 89 liiVL~~A~LEl~--------k~gK~--~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIh 158 (294)
+.|||++|+||++ |+||+ |+|||+|+|+++|++++++++||||||||||||+||||||||+|+|| ||||
T Consensus 2 ~~~VL~~a~LElvp~~~~~~~~~~k~~~~~LLd~~~H~~~mkk~~~~~~~gRPDIvHq~LL~lldSpLNk~g~L~-VYIh 80 (204)
T d3bbda1 2 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLN-IYIH 80 (204)
T ss_dssp EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEE-EEEE
T ss_pred eEEEEeCCcccccchhhhcCcccCCCccccccchHHHHHHHHhCcCcccccCCCHHHHHHHHHhcChhhhcCCeE-EEEE
Confidence 6799999999996 55665 99999999999999999999999999999999999999999999999 9999
Q ss_pred ecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccc-cCCCeEEEEeccCccccchhHHh
Q 022653 159 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL-PVNSRKIGFSYSSEKLVKMRNYV 237 (294)
Q Consensus 159 T~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~L-p~~~~~I~LS~~~gk~v~~~~~~ 237 (294)
|.+|+||+|||++||||||+||+|||+|||+++++ +||++.+++|++++ |.|+++|++++++|+.+.+ +++
T Consensus 81 T~~~~lI~V~P~~RvPRty~rF~gLM~qLL~~~~~-------~ll~~~~~~l~~l~~~~~~~~i~ls~~~~~~~~~-~~~ 152 (204)
T d3bbda1 81 TYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERN-------HLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP-KLL 152 (204)
T ss_dssp ETTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCCC-------SSEEEEECCHHHHHHHTTCCEEEEEEEEEEECCG-GGG
T ss_pred ccCCEEEEECCCCcCCCCHHHHHHHHHHHhhcCCc-------ceEeccCCcHHHHhCccCCeEEEEEccCCcccCH-hHc
Confidence 99999999999999999999999999999987554 58999999999999 5689999999888876554 333
Q ss_pred hhcCCCCCeEEEEccccCCCCCCCCc---c--ceEEecCCCccHHHHHHHHHHHHH
Q 022653 238 ASISDDDNLVFVVGAMAHGKIDCDYT---D--DLIAISGYPLSAARCIARICEALE 288 (294)
Q Consensus 238 ~~l~~~~~~vfvIGaf~hGd~~~~~~---~--e~iSIS~ypLsAa~vcsrI~~a~E 288 (294)
. .+.||+|||||||+|+.++. + +.||||+||||||+||||||+||+
T Consensus 153 ~-----~~~~~vIGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v~sri~~a~~ 203 (204)
T d3bbda1 153 K-----EYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLS 203 (204)
T ss_dssp G-----GCSEEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHHHHHHHHHHH
T ss_pred C-----CCCeEEEEEecCCCccccchhhhccceEEEeeCCChHHHHHHHHHHhhhh
Confidence 2 34699999999999987762 2 469999999999999999999997
No 3
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=95.37 E-value=0.01 Score=47.70 Aligned_cols=82 Identities=9% Similarity=0.183 Sum_probs=60.6
Q ss_pred ccccccCCCeEEEEeccCccccchhHHhhhcC----CCCCeEEEEccccCCCCC--CCCccceEEecCCCccHHHHHHHH
Q 022653 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASIS----DDDNLVFVVGAMAHGKID--CDYTDDLIAISGYPLSAARCIARI 283 (294)
Q Consensus 210 l~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~----~~~~~vfvIGaf~hGd~~--~~~~~e~iSIS~ypLsAa~vcsrI 283 (294)
|.+.+++++.+|+|+ +.|+.++-.+|...+. .+.+++|+||| |+|--. -+-++..+|+|+--++-..+---+
T Consensus 56 il~~i~~~~~~I~LD-e~Gk~~sS~~fA~~l~~~~~~g~~i~FiIGG-a~Gl~~~~~~~a~~~lSls~mT~pH~l~rv~l 133 (147)
T d1o6da_ 56 LTNRILPGSFVMVMD-KRGEEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIV 133 (147)
T ss_dssp HHTTCCTTCEEEEEE-EEEEECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCSSCCCHHHHHHHH
T ss_pred HhccCCCCCEEEEEe-cccCCcCCHHHHHHHHHHHhcCCCCEEEEEC-CCCCCHHHHHhcCcEEeCCcCcchHHHHHHHH
Confidence 456677788899999 7788888777775542 24679999995 566311 123889999999999888887777
Q ss_pred HHHHHhhhcC
Q 022653 284 CEALEDKWNL 293 (294)
Q Consensus 284 ~~a~E~~wgI 293 (294)
+.-+...|-|
T Consensus 134 ~EQlYRa~~I 143 (147)
T d1o6da_ 134 LEQIFRAFKI 143 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 4
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=94.98 E-value=0.012 Score=47.52 Aligned_cols=80 Identities=13% Similarity=0.224 Sum_probs=57.7
Q ss_pred cccccCCCeEEEEeccCccccchhHHhhhcC----C-CCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHH
Q 022653 211 TQYLPVNSRKIGFSYSSEKLVKMRNYVASIS----D-DDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIAR 282 (294)
Q Consensus 211 ~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~----~-~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsr 282 (294)
...+++++.+|+|+ +.|+.++-.+|...+. . ...++|+||+ |+|- +.+. ++..+|+|.--++-..+---
T Consensus 64 l~~i~~~~~~I~LD-e~Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGG-a~G~-~~~~~~~a~~~~Sls~mT~pH~l~r~~ 140 (157)
T d1to0a_ 64 LSKISPDAHVIALA-IEGKMKTSEELADTIDKLATYGKSKVTFVIGG-SLGL-SDTVMKRADEKLSFSKMTFPHQLMRLI 140 (157)
T ss_dssp HTTSCTTSEEEEEE-EEEEECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCC-CHHHHHHCSEEEESCSSCCCHHHHHHH
T ss_pred HhhcCCCCeEEEec-cchhhhhHHHHHHHHHHHHhcCCcceEEEECC-CCCC-CHHHHhhcCcEEecccCCchHHHHHHH
Confidence 34556678899999 7788888777776552 2 3558999997 6774 2222 78899999988888777776
Q ss_pred HHHHHHhhhcC
Q 022653 283 ICEALEDKWNL 293 (294)
Q Consensus 283 I~~a~E~~wgI 293 (294)
++.-+.+.|-|
T Consensus 141 l~EQiYRa~tI 151 (157)
T d1to0a_ 141 LVEQIYRAFRI 151 (157)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666666644
No 5
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=94.53 E-value=0.013 Score=47.24 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=56.3
Q ss_pred ccccccCCCeEEEEeccCccccchhHHhhhcC-----CCCCeEEEEccccCCCCCCC---CccceEEecCCCccHHHHHH
Q 022653 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASIS-----DDDNLVFVVGAMAHGKIDCD---YTDDLIAISGYPLSAARCIA 281 (294)
Q Consensus 210 l~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~-----~~~~~vfvIGaf~hGd~~~~---~~~e~iSIS~ypLsAa~vcs 281 (294)
+...+++++..|+|+ +.|+.++-.+|...+. ....++|+||+ |.|- +.+ -++..+|+|+--++-..|--
T Consensus 63 il~~i~~~~~~I~LD-e~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGG-a~G~-~~~~~~~a~~~lSls~mT~pH~larv 139 (157)
T d1vh0a_ 63 ILAKIKPQSTVITLE-IQGKMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGL-HKDVLQRSNYALSFSKMTFPHQMMRV 139 (157)
T ss_dssp HHHTSCTTSEEEEEE-EEEECCCHHHHHHHHHHHHHTTCCEEEEEECB-TTBC-CHHHHHHCSEEECSCSSCCCHHHHHH
T ss_pred HHHhcCCCCeEEEEe-cccccCCCHHHHHHHHHHHhhcCCceEEEEcC-CCcc-CHHHHhhcCCEEECccCCchhHHHHH
Confidence 344667778899999 6788888887776552 24578999997 5553 122 27889999998888766666
Q ss_pred HHHHHHHhhhcC
Q 022653 282 RICEALEDKWNL 293 (294)
Q Consensus 282 rI~~a~E~~wgI 293 (294)
-++.-+.+.|-|
T Consensus 140 ~l~EQlYRa~~I 151 (157)
T d1vh0a_ 140 VLIEQVYRAFKI 151 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555555543
No 6
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=92.94 E-value=0.55 Score=39.61 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=93.3
Q ss_pred CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEEEcCCCCCCCC-h--hHHHHHHHHHHHcCccccCCC-
Q 022653 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFEVKPHVRLPRT-Y--KRFAGIMLQLLQKLSITAVGK- 198 (294)
Q Consensus 127 k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~----~lIeVsP~~RIPRt-y--~RF~GLM~qLL~k~~I~~~~~- 198 (294)
..||-||+=.|+.+.|=--=.-.--.+ ||+|-.++ +.|.++...--+-+ + .-.++++...|... +++.+.
T Consensus 24 gsGRmDvL~R~v~salflShgiR~Dv~-v~L~L~g~p~p~r~I~f~g~~l~~l~p~dErs~a~~I~kaL~~~-~~~~~~~ 101 (201)
T d2qwva1 24 GKCHTEILAHCMMNSLFTAQSHREDVV-IHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDAS-VGMGKEQ 101 (201)
T ss_dssp SSSCTHHHHHHHHHHHBCSSSBCSSEE-EEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHT-TTCCTTC
T ss_pred CCcchhHHHHHHHHHHHHhcCCccCeE-EEEEECCCCCCCeEEEEecccccCCCchhHHHHHHHHHHHhhcc-CCCCCcc
Confidence 359999999999988733222233466 88887765 77777655443333 2 33667777766542 111100
Q ss_pred ---CcceEEEEecccccccc---CCCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCC-------CCccc
Q 022653 199 ---REKLLRVIKNPVTQYLP---VNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDC-------DYTDD 265 (294)
Q Consensus 199 ---~~~LLkviknpl~~~Lp---~~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~-------~~~~e 265 (294)
-.+=+.+-+.+++++|. .++.++.|+ +.|+.+ .+ .....+++|+.| -|-.|.. +...+
T Consensus 102 ~~e~~pGi~~~~~~~e~~l~e~~e~~~~~~Ld-e~G~~i--~~----~~~~~~~~FILs--Dh~~~~~~e~~~L~~~g~~ 172 (201)
T d2qwva1 102 TRVVQPGLTVRTISFEALLGELAEHHSLYMMD-KKGDSI--RD----IKIGPNPCFILT--DHIPMPKKSGNSMKRLGVE 172 (201)
T ss_dssp EEEEETTEEEECCCHHHHHHHHHTTSEEEEEE-EEEEET--TT----SCCCSSEEEEEC--C----------CTTTTTCE
T ss_pred eeEeCCCEEEeCCCHHHHHHHHhcCCcEEEEC-CCCCch--hh----ccCCCCCEEEEe--CCCCCCHHHHHHHHhcCCe
Confidence 01237778888988885 357789999 556533 22 222356799998 3333432 23567
Q ss_pred eEEecCCCccHHHHHHHHHHHHH
Q 022653 266 LIAISGYPLSAARCIARICEALE 288 (294)
Q Consensus 266 ~iSIS~ypLsAa~vcsrI~~a~E 288 (294)
.||++..+|=|++|+.=+=+.+-
T Consensus 173 ~iSLGp~~L~ashcI~ivH~~LD 195 (201)
T d2qwva1 173 KISLGPKMLFASQCVTLIHNEID 195 (201)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHH
T ss_pred eEeeccHHHHHhHHHHHHHHHhh
Confidence 89999999999999987776663
No 7
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=88.82 E-value=2.7 Score=34.90 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=96.2
Q ss_pred CCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEEEcCCC--CCCCChhHHHHHHHHHHHcCccccCCC-
Q 022653 126 PADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFEVKPHV--RLPRTYKRFAGIMLQLLQKLSITAVGK- 198 (294)
Q Consensus 126 ~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~----~lIeVsP~~--RIPRty~RF~GLM~qLL~k~~I~~~~~- 198 (294)
+.-||-||+=.|+.++|=--=.-..-.+ ||+|-..+ +-|.++..- ++.-.=.-++|++..-|.. ++.+.
T Consensus 22 ~gsGRmDVl~R~v~aAlflShgiR~Dv~-v~l~L~g~p~p~r~I~f~G~~lk~l~pdErSia~~I~kaL~~---~~~~~~ 97 (194)
T d2qmma1 22 PGAGRMDVLCRCTSQALFISHGIRRDVE-VYLLLLGPPSPPKSILIKGDEVRRMSPDERNVAGHIKKALAV---ECGKSW 97 (194)
T ss_dssp TTTTSHHHHHHHHHHHHEETTEECTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHS---CCCSSC
T ss_pred CCCCceehhhHHHHHHHHHhcCccCCcE-EEEEEcCCCCCCeeEEEeccccccCCccHHHHHHHHHHHhcC---CCCCCc
Confidence 3469999999999988732222223456 88887543 556655542 5655667788999888853 22111
Q ss_pred C--cceEEEEeccccccccC---CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCC-------Cccce
Q 022653 199 R--EKLLRVIKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCD-------YTDDL 266 (294)
Q Consensus 199 ~--~~LLkviknpl~~~Lp~---~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~-------~~~e~ 266 (294)
. .+=+.+-+.++++++.. +..++.|+ +.|..+ .+. .-..+++|++| -|-.|..+ +....
T Consensus 98 ~e~~pGI~vs~~~~e~~l~e~~~~~~~~~Ld-~~G~~i--~~~----~~~~~~~FILs--Dh~~l~~~e~~~L~~~~~~~ 168 (194)
T d2qmma1 98 KKVHSGVYVSRKGLEELIEELSEKYSIIYLK-EDGVDI--SNA----QLPPNPLFVIG--DHEGLTEEQEKVVERYAALK 168 (194)
T ss_dssp EEEETTEEEECCCHHHHHHHHHHHSEEEEEE-EEEEEG--GGS----CCCSSEEEEEE--CTTCCCHHHHHHHHTTCSEE
T ss_pred eeecCCEEEeCCCHHHHHHHHhccCcEEEEC-CCCCcc--ccc----ccCCCCeEEEe--CCCCCChHHHHHHhhcCCee
Confidence 0 11257777888888853 35677788 556533 221 22345689988 44445432 35678
Q ss_pred EEecCCCccHHHHHHHHHHHHH
Q 022653 267 IAISGYPLSAARCIARICEALE 288 (294)
Q Consensus 267 iSIS~ypLsAa~vcsrI~~a~E 288 (294)
||++..+|-|++|+.=|=+.+-
T Consensus 169 iSLGp~~L~a~hcI~ivh~~LD 190 (194)
T d2qmma1 169 LSLSPLSLLAEQCVVIAHHHLD 190 (194)
T ss_dssp EECCSSCCCHHHHHHHHHHHHH
T ss_pred EeccccccchhhhHhHHHHHHh
Confidence 9999999999999987766553
No 8
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=86.48 E-value=0.2 Score=39.86 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=53.1
Q ss_pred cccCCCeEEEEeccCccccchhHHhhhcC----CCCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHHHHH
Q 022653 213 YLPVNSRKIGFSYSSEKLVKMRNYVASIS----DDDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARICE 285 (294)
Q Consensus 213 ~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~----~~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsrI~~ 285 (294)
.++ +..+|+|+ +.|+.++-.+|...+. ++.+++|+||| |.|- +.+. ++..+|+|.--++-..+---++.
T Consensus 63 ~~~-~~~~I~LD-e~Gk~~sS~~fA~~l~~~~~~g~~i~fiIGG-a~G~-~~~~~~~a~~~lsls~mT~pH~lar~~l~E 138 (153)
T d1ns5a_ 63 AAG-KNRIVTLD-IPGKPWDTPQLAAELERWKLDGRDVSLLIGG-PEGL-SPACKAAAEQSWSLSALTLPHPLVRVLVAE 138 (153)
T ss_dssp HHT-TSEEEEEE-EEEECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBC-CHHHHHHCSEEECCCSSCCCHHHHHHHHHH
T ss_pred hcc-CCeEEEee-ccccccChHHHHHHHHHHhhccCcEEEEEEc-CCCC-CHHHHHhhCcEEecccCCchHHHHHHHHHH
Confidence 344 35689999 7788888777766552 25679999997 4553 2222 78899999988887776666665
Q ss_pred HHHhhhcC
Q 022653 286 ALEDKWNL 293 (294)
Q Consensus 286 a~E~~wgI 293 (294)
-+...|.|
T Consensus 139 QlYRa~~I 146 (153)
T d1ns5a_ 139 SLYRAWSI 146 (153)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 9
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=73.10 E-value=0.79 Score=39.97 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHHHHH
Q 022653 217 NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAARCI 280 (294)
Q Consensus 217 ~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa~vc 280 (294)
++++|.|| ..|+..+ .+.+..+.....++|+-|-+--=| |...|+++.|||.+|-||.--+.
T Consensus 83 ~~~vI~lS-P~Gk~f~-Q~~a~~ls~~~~liliCGrYEGiDeRv~~~~~d~eiSiGDyVLsGGEl~ 146 (252)
T d1uala_ 83 GAKVIYLS-PQGRKLD-QGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELP 146 (252)
T ss_dssp TCEEEEEE-EEEEECC-HHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHH
T ss_pred CCcEEEEC-CCCCchh-hHHHHHhhccccEEEEeccchhHhHHHHHhhcceeeecccEEEeccchH
Confidence 57899999 5577655 345666777777777655443223 33446999999999999954333
No 10
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=48.55 E-value=6.5 Score=33.52 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=38.4
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHH
Q 022653 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAA 277 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa 277 (294)
..+|.|| ..|+..+- ..+..+.....++|+-|-+--=| +. ++.++.|||.+|-||.-
T Consensus 81 ~~vI~lS-P~G~~~~Q-~~a~~ls~~~~liliCGRYEGiDeRv~-~~~d~EiSiGDyVLsGG 139 (232)
T d1oy5a_ 81 PFVLITE-PWGEKLNQ-KLVNELSKKERIMIICGRYEGVDERVK-KIVDMEISLGDFILSGG 139 (232)
T ss_dssp CEEEEEC-TTBCCCCH-HHHHHHHTCSEEEEEECBTTCBCGGGG-GGCCEECCBCSSCCSBS
T ss_pred CceEeec-hhhcccch-hhhhhhhcCCcEEEEecccccHhhHhh-cCCceEEEeccEEEeCC
Confidence 5678899 56776553 45666666777777766543223 42 35677799999999853
No 11
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.37 E-value=2.1 Score=29.99 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=18.9
Q ss_pred hhcchhhhcCCccEEEEEecCCeEEEEcCCC
Q 022653 141 ILDSRLTKAGRLQAVYVRTDKGVLFEVKPHV 171 (294)
Q Consensus 141 LLDSPLNKaG~L~~VYIhT~~~~lIeVsP~~ 171 (294)
+|||+.. |+-|+.+|.+++|||.+
T Consensus 2 a~d~~~f-------i~r~~~dG~i~~~N~~~ 25 (114)
T d1p97a_ 2 AMDSKTF-------LSRHSMDMKFTYCDDRI 25 (114)
T ss_dssp CCCCEEE-------EEEECTTTSCSEECTTH
T ss_pred CcCcCEE-------EEEECCCCcEEEECHHH
Confidence 5677644 55599999999999874
No 12
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=37.76 E-value=36 Score=26.19 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=61.3
Q ss_pred hhHHHHHHHH-HHHcCccccCCCCcceEEEEe-ccccccccCCCeEEEEeccCccccchhHHhhhcCCCCCeEEEEcccc
Q 022653 177 YKRFAGIMLQ-LLQKLSITAVGKREKLLRVIK-NPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMA 254 (294)
Q Consensus 177 y~RF~GLM~q-LL~k~~I~~~~~~~~LLkvik-npl~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~ 254 (294)
+.||...+.. +-+.++ ..|.++.. .++.+++.. ...+.+..... ..+.+. +....+++++|| |
T Consensus 52 ~~r~~~i~~~A~~Qs~r-------~~lP~i~~~~~l~~~~~~-~~~~~~~~~~~--~~~~~~---~~~~~~i~i~IG--P 116 (162)
T d1v6za2 52 LRRLRAVALEAAKQSGR-------VVVPEVLPPIPLKAVPQV-AQGLVAHVGAT--ARVREV---LDPEKPLALAVG--P 116 (162)
T ss_dssp HHHHHHHHHHHHHHTTC-------SSCCEECCCEEGGGCCCC-SSEEEECTTCC--CCHHHH---CCTTSCEEEEEC--C
T ss_pred hhHHHHHHHHHHHhccc-------cCCCccccccCHHHHhhh-cchhhcccccc--ccchhh---hcccCcceEEEe--c
Confidence 4566665554 333333 23444432 457777764 33444453322 223333 344667889998 8
Q ss_pred CCCCCCCC-------ccceEEecCCCccHHHHHHHHHHHHHhhhc
Q 022653 255 HGKIDCDY-------TDDLIAISGYPLSAARCIARICEALEDKWN 292 (294)
Q Consensus 255 hGd~~~~~-------~~e~iSIS~ypLsAa~vcsrI~~a~E~~wg 292 (294)
-|.|+.+= --..++++..-|-|-+++--.++.+-..||
T Consensus 117 EGGfs~~Ei~~l~~~g~~~v~LG~~ILR~ETA~i~als~~~~~~G 161 (162)
T d1v6za2 117 EGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEG 161 (162)
T ss_dssp TTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHHHTGGGT
T ss_pred cCCCCHHHHHHHHHCCCEEEECCCCccHHHhHHHHHHHHHHHHhC
Confidence 89887541 124688999999999988878887777776
No 13
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=29.62 E-value=34 Score=26.59 Aligned_cols=104 Identities=9% Similarity=0.096 Sum_probs=60.3
Q ss_pred ChhHHHHHHHH-HHHcCccccCCCCcceEEEEe-ccccccccC--CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEc
Q 022653 176 TYKRFAGIMLQ-LLQKLSITAVGKREKLLRVIK-NPVTQYLPV--NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVG 251 (294)
Q Consensus 176 ty~RF~GLM~q-LL~k~~I~~~~~~~~LLkvik-npl~~~Lp~--~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIG 251 (294)
++.||...+.. +-+-|+ ..|.+|.. .++.+++.. +...+.+...+.. .+..+- . ....+++|+||
T Consensus 54 k~~r~~~i~~~A~eQsgr-------~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~i~iiIG 122 (174)
T d1nxza2 54 KIQQWQKIAIAACEQCGR-------NIVPEIRPLMKLQDWCAENDGALKLNLHPRAHY--SIKTLP-T-IPAGGVRLLIG 122 (174)
T ss_dssp HHHHHHHHHHHHHHHHCC-------SSCCEECCCEEHHHHHHCCSSCEEEEECTTCSC--BGGGCC-C-CCTTCEEEEEC
T ss_pred hHHHHHHHHHHHHHhcCc-------cccccccchhhHHHHHhhhcchhhhhhhhhhhh--hhhhhc-c-CCCCcEEEEEc
Confidence 44566665544 333333 23444432 456676653 2334444433222 122221 1 12456888997
Q ss_pred cccCCCCCCC-------CccceEEecCCCccHHHHHHHHHHHHHhhhc
Q 022653 252 AMAHGKIDCD-------YTDDLIAISGYPLSAARCIARICEALEDKWN 292 (294)
Q Consensus 252 af~hGd~~~~-------~~~e~iSIS~ypLsAa~vcsrI~~a~E~~wg 292 (294)
|-|.|+.+ .--..++++..-|-+-+++--.++.+-..||
T Consensus 123 --PEGGfs~~E~~~~~~~g~~~v~LG~~ILR~ETA~i~als~l~~~~g 168 (174)
T d1nxza2 123 --SEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFG 168 (174)
T ss_dssp --CTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHHHHHHHS
T ss_pred --CCcCcCHHHHHHHHHCCCeEeeCCCCcchHHhHHHHHHHHHHHHhc
Confidence 89988743 1225689999999999998888888877766
No 14
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.25 E-value=30 Score=27.88 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=43.7
Q ss_pred CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCCCccceEEecCCCccHHHHHHHHHHHH
Q 022653 217 NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEAL 287 (294)
Q Consensus 217 ~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~~~~e~iSIS~ypLsAa~vcsrI~~a~ 287 (294)
+..+|=|+ .=|. +..+.+..++.+.++.+||||--=--.--+.+|-.+||.|-|=|=-++.+=++..+
T Consensus 73 ~G~vVHLT-MYG~--~~~~~~~~Ir~~~~ilvVVGaeKVP~evyelADyNVaVgNQPHSEVAALAiFLDrl 140 (167)
T d2o3aa1 73 DGLKVHLT-MYGI--PLPQKLEEIKRADKVLVVVGAEKVPPEVYELCDLNISIGTQPHSEVAALAVFLDRV 140 (167)
T ss_dssp CSEEEEEE-EEEE--EHHHHHHHHHTCSEEEEEEC----CTTHHHHSSEEEESSSSCCCHHHHHHHHHHHH
T ss_pred CCEEEEee-cCCC--chHHHhhhcccCCCEEEEECCccCCHHHHhhcccceecCCCCcHHHHHHHHHHHHh
Confidence 45566555 3353 46677778888889999999842211111137889999999999877766655543
No 15
>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.03 E-value=43 Score=23.57 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=28.7
Q ss_pred cchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhHHHHHH
Q 022653 143 DSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIM 184 (294)
Q Consensus 143 DSPLNKaG~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM 184 (294)
+||..++|+|+ ..++|++||-.-=.=-++.....+|
T Consensus 36 ggpA~~~G~L~------~GD~Il~INg~~v~~~s~~e~~~~l 71 (112)
T d1qaua_ 36 GGAAEQSGLIQ------AGDIILAVNDRPLVDLSYDSALEVL 71 (112)
T ss_dssp TSHHHHHTCCC------TTCEEEEETTEECTTSCHHHHHHHH
T ss_pred CCHHHHhhhcc------cccEeEEECCcCccCCCHHHHHHHH
Confidence 69999999999 9999999997666556666665444
Done!