Query 022654
Match_columns 294
No_of_seqs 153 out of 367
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02478 alternative oxidase 100.0 4E-77 8.7E-82 559.1 18.4 215 53-280 89-313 (328)
2 PF01786 AOX: Alternative oxid 100.0 2.3E-73 5E-78 512.0 13.1 195 70-277 1-207 (207)
3 cd01053 AOX Alternative oxidas 100.0 4.9E-70 1.1E-74 476.9 12.2 163 114-277 1-166 (168)
4 cd01053 AOX Alternative oxidas 91.5 0.026 5.7E-07 50.5 -2.0 20 268-287 136-155 (168)
5 PLN02478 alternative oxidase 90.9 0.038 8.2E-07 53.8 -1.7 20 268-287 280-299 (328)
6 cd01042 DMQH Demethoxyubiquino 89.8 1.6 3.4E-05 39.0 7.6 97 150-267 27-128 (165)
7 PF01786 AOX: Alternative oxid 77.5 0.34 7.3E-06 44.7 -2.2 20 268-287 176-196 (207)
8 PF03232 COQ7: Ubiquinone bios 63.9 59 0.0013 29.1 8.9 77 151-232 31-112 (172)
9 cd07908 Mn_catalase_like Manga 61.5 17 0.00038 30.5 5.0 106 123-231 17-127 (154)
10 COG2941 CAT5 Ubiquinone biosyn 53.1 88 0.0019 29.2 8.2 71 157-232 75-150 (204)
11 cd01044 Ferritin_CCC1_N Ferrit 39.9 55 0.0012 26.8 4.5 71 150-230 25-101 (125)
12 KOG0064 Peroxisomal long-chain 31.5 2.3E+02 0.005 30.8 8.4 108 104-229 191-306 (728)
13 cd01045 Ferritin_like_AB Uncha 29.5 2.7E+02 0.0058 21.6 9.4 82 150-232 25-113 (139)
14 COG3160 Rsd Regulator of sigma 25.4 1.6E+02 0.0034 26.5 5.1 40 208-249 57-96 (162)
15 PRK00046 murB UDP-N-acetylenol 23.3 43 0.00094 32.9 1.4 17 125-141 109-125 (334)
16 PF13030 DUF3891: Protein of u 22.1 5.8E+02 0.013 23.5 8.4 116 30-176 26-142 (221)
17 PLN02975 complex I subunit 21.8 1.1E+02 0.0024 25.4 3.3 40 177-220 51-90 (97)
18 PRK10467 hydrogenase 2 large s 21.4 4.7E+02 0.01 27.8 8.5 67 113-179 44-115 (567)
No 1
>PLN02478 alternative oxidase
Probab=100.00 E-value=4e-77 Score=559.14 Aligned_cols=215 Identities=23% Similarity=0.331 Sum_probs=201.1
Q ss_pred EeecCCceeeeccCCCCCCCCCCC-------CCCCCcchHHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccchhhHHHH
Q 022654 53 ILQDEEEKVVVEESSPLKNFPNDD-------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVL 125 (294)
Q Consensus 53 ~~~~~~~~~~~~~~~ph~~~~~~~-------~~P~~~~d~~a~~~v~~~r~~fd~~~t~~~~~~~d~l~~~r~~~R~ifL 125 (294)
++++|+.+-.-.-.+|||+|+.++ ++|++++||+|+++|+.+|+++|+ +|++||++|++||
T Consensus 89 ~~~~dg~~~~w~~~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~------------~f~~R~~~R~ifL 156 (328)
T PLN02478 89 ITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDL------------FFQRRYGCRAMML 156 (328)
T ss_pred cccCCCCCCCccCcCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHH------------HhhcchhhHHHHH
Confidence 444555443334788999999877 899999999999999999999987 4799999999999
Q ss_pred HHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022654 126 ETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVIS 205 (294)
Q Consensus 126 ETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~~~q~~fy~~f~~~Ylvs 205 (294)
||||||||||+||++||+|+|+|+||+|||++|||||||||||||||+++++|+ |++|++++++|++|||+||++|++|
T Consensus 157 ETVA~VPGmV~gmlrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~-w~eR~lv~~aQgvf~~~ff~~YLiS 235 (328)
T PLN02478 157 ETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK-WYERALVIAVQGVFFNAYFLGYLIS 235 (328)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHhhc-ccccCCCCCHHHHhhccC-CCccchhhhhhccCCCC-CCCCCCCcceeeE
Q 022654 206 PRMAYHFSECVESHAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTG-GDLYLFDEFQTARLPNS-RRPKIGKERVLFL 280 (294)
Q Consensus 206 Pr~ahRfvgyLEEEAV~TYT~~L~ei~-g~~~~~pAP~iAi~YW~l-~D~~l~De~~~~R~de~-rrp~~~~l~Dvf~ 280 (294)
||+|||||||||||||+|||+||+||| |+++|+|||+||++||++ +|++|+|++..+|+||. ||..+.++-|+.+
T Consensus 236 Pr~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdVNH~~sd~~~ 313 (328)
T PLN02478 236 PKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIHY 313 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhccCcchhhhhh
Confidence 999999999999999999999999997 999999999999999999 58999999999999995 8999999988754
No 2
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=100.00 E-value=2.3e-73 Score=511.98 Aligned_cols=195 Identities=32% Similarity=0.447 Sum_probs=186.2
Q ss_pred CCCCCCC--------CCCCCcchHHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccchhhHHHHHHhhcCchhHHHHHHH
Q 022654 70 KNFPNDD--------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH 141 (294)
Q Consensus 70 ~~~~~~~--------~~P~~~~d~~a~~~v~~~r~~fd~~~t~~~~~~~d~l~~~r~~~R~ifLETVA~VPGmv~~~~rH 141 (294)
|+|++++ ++|++++|++|+..|+.+|+.+|+ +|++||++|++||||||||||||+||++|
T Consensus 1 ~~~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~------------~~~~r~~~R~~~LEtVA~VPg~v~~~~~H 68 (207)
T PF01786_consen 1 PIYTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDL------------LFEKRWLHRFIFLETVAGVPGMVGGMVRH 68 (207)
T ss_pred CCCCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHH------------hccccchhheeeeeecccCChHHHHHHHH
Confidence 7888776 899999999999999998888876 88999999999999999999999999999
Q ss_pred HHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHH
Q 022654 142 MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221 (294)
Q Consensus 142 L~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV 221 (294)
|+|+++|+||+|||++|+|||||||||||||++|++|+ |++|++++++|++|||+|+++|++|||+|||||||||||||
T Consensus 69 l~slr~~~rd~g~I~~lleEaeNErmHLli~~~l~~p~-~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv 147 (207)
T PF01786_consen 69 LRSLRRMKRDGGWIKTLLEEAENERMHLLIFEELGKPS-WFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAV 147 (207)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-ccccCCCCCHHHHhhccCC--CccchhhhhhccCCCC-CCCCCCCcce
Q 022654 222 ETYDKFIKAQG-EKLKKMPAPAVAIKYYTGG--DLYLFDEFQTARLPNS-RRPKIGKERV 277 (294)
Q Consensus 222 ~TYT~~L~ei~-g~~~~~pAP~iAi~YW~l~--D~~l~De~~~~R~de~-rrp~~~~l~D 277 (294)
+|||+||+||+ |+++++|||+||++||+++ |++|+|++.++|+||. +|..+.++-|
T Consensus 148 ~tYt~~l~di~~g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~vNH~~a~ 207 (207)
T PF01786_consen 148 HTYTEFLEDIDEGKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDVNHTLAD 207 (207)
T ss_pred HHHHHHHHHcccCCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHhhhhhcC
Confidence 99999999998 8999999999999999995 7999999999999996 7788777655
No 3
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=100.00 E-value=4.9e-70 Score=476.92 Aligned_cols=163 Identities=37% Similarity=0.611 Sum_probs=153.8
Q ss_pred ccccchhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 022654 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVA 193 (294)
Q Consensus 114 ~~~r~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~~~q~~ 193 (294)
|++||++||+||||||||||||++|++||+|+||||||+||||+|||||||||||||||++|+||+ |++|.++...|++
T Consensus 1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~-~~~r~~v~~~q~v 79 (168)
T cd01053 1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPG-WWFRRFVAQHQAV 79 (168)
T ss_pred CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999 6777777888889
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhHHHHHHHHHHhhc-ccccCCCCCHHHHhhccC-CCccchhhhhhccCCCC-CCC
Q 022654 194 YYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTG-GDLYLFDEFQTARLPNS-RRP 270 (294)
Q Consensus 194 fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TYT~~L~ei~-g~~~~~pAP~iAi~YW~l-~D~~l~De~~~~R~de~-rrp 270 (294)
|||+|+++|++|||+|||||||||||||+|||+||+|+| |+++++|||+||++||++ +|++|+|++.++|+||. ||.
T Consensus 80 fy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~ 159 (168)
T cd01053 80 FYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRK 159 (168)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHH
Confidence 999999999999999999999999999999999999998 788899999999999999 48999999999999995 777
Q ss_pred CCCCcce
Q 022654 271 KIGKERV 277 (294)
Q Consensus 271 ~~~~l~D 277 (294)
.+.++.|
T Consensus 160 vnh~~~~ 166 (168)
T cd01053 160 VNHACAD 166 (168)
T ss_pred HHHHhhc
Confidence 7777655
No 4
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=91.50 E-value=0.026 Score=50.53 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=18.3
Q ss_pred CCCCCCCcceeeEEeecccc
Q 022654 268 RRPKIGKERVLFLALPIRSY 287 (294)
Q Consensus 268 rrp~~~~l~Dvf~~ir~~~~ 287 (294)
+.|+++||||||++||+||-
T Consensus 136 ~l~~~atl~Dvi~~IR~DEa 155 (168)
T cd01053 136 RLGEDATLYDVFVAIRADEA 155 (168)
T ss_pred CCCCCCcHHHHHHHHHhhHH
Confidence 57899999999999999984
No 5
>PLN02478 alternative oxidase
Probab=90.93 E-value=0.038 Score=53.81 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=18.8
Q ss_pred CCCCCCCcceeeEEeecccc
Q 022654 268 RRPKIGKERVLFLALPIRSY 287 (294)
Q Consensus 268 rrp~~~~l~Dvf~~ir~~~~ 287 (294)
++|+++||+|||++||+||-
T Consensus 280 ~LP~~atLrDVi~~IRaDEa 299 (328)
T PLN02478 280 RLPADATLRDVVTVVRADEA 299 (328)
T ss_pred CCCCCCcHHHHHHHHHhhhh
Confidence 79999999999999999984
No 6
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=89.79 E-value=1.6 Score=38.97 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHHHH
Q 022654 150 RRADYLKVHFAESWNEMHHLLIMEEL-----GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224 (294)
Q Consensus 150 Rd~~~I~tlleEAeNErmHLltf~~l-----~~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TY 224 (294)
++...-+.+-+=++.|.-||-+|.++ ..|+ + +....-.+.|... ++.=++.++.++-|+.-+|+-...-|
T Consensus 27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps-~---l~PlW~~~gf~lG-~~tal~G~~~a~~~~~avE~~V~~Hy 101 (165)
T cd01042 27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPS-L---LLPLWYVAGFALG-ALTALLGKKAAMACTAAVETVVEEHY 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-h---HHHHHHHHHHHHH-HHHHhhChHHHHHHHHHHHHHHHHHH
Confidence 44444455556678899999988876 2566 2 2222222344433 45667799999999999999999999
Q ss_pred HHHHHhhcccccCCCCCHHHHhhccCCCccchhhhhhccCCCC
Q 022654 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267 (294)
Q Consensus 225 T~~L~ei~g~~~~~pAP~iAi~YW~l~D~~l~De~~~~R~de~ 267 (294)
..-|++++.. +|.-+.+.++..|.||.
T Consensus 102 ~~ql~~L~~~----------------~d~~l~~~l~~~r~DE~ 128 (165)
T cd01042 102 NDQLRELPAQ----------------PDKELRAIIEQFRDDEL 128 (165)
T ss_pred HHHHHHhhcc----------------CCHHHHHHHHHHHHHHH
Confidence 9999998632 35666777777777774
No 7
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=77.55 E-value=0.34 Score=44.67 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.9
Q ss_pred CCCC-CCCcceeeEEeecccc
Q 022654 268 RRPK-IGKERVLFLALPIRSY 287 (294)
Q Consensus 268 rrp~-~~~l~Dvf~~ir~~~~ 287 (294)
+.|. .+||+|||++||+||-
T Consensus 176 ~l~~~~atlrDvi~~IRaDEa 196 (207)
T PF01786_consen 176 GLPELDATLRDVILAIRADEA 196 (207)
T ss_pred CCCccCchHHHHHHHHHhhHH
Confidence 6777 8999999999999984
No 8
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=63.86 E-value=59 Score=29.14 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHHhHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHHHHH
Q 022654 151 RADYLKVHFAESWNEMHHLLIMEELG-----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225 (294)
Q Consensus 151 d~~~I~tlleEAeNErmHLltf~~l~-----~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TYT 225 (294)
+.+.-..+-+=+++|.-||..|.++- .|+. +....-.+.|... ++.=++.++.+.-++.-+|+....-|.
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~----l~Plw~~~g~~LG-~~tal~G~~~~~a~t~avE~~V~~Hy~ 105 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSL----LNPLWYVAGFALG-ALTALLGDKAAMACTAAVETVVEEHYN 105 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcH----HHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 44434444455568999999998873 4662 3333333444444 456789999999999999999999999
Q ss_pred HHHHhhc
Q 022654 226 KFIKAQG 232 (294)
Q Consensus 226 ~~L~ei~ 232 (294)
.-|++++
T Consensus 106 ~Ql~~L~ 112 (172)
T PF03232_consen 106 DQLRELP 112 (172)
T ss_pred HHHHHHH
Confidence 9999986
No 9
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=61.52 E-value=17 Score=30.55 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=68.5
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCccc-ccchHHHHHHHHHhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHH
Q 022654 123 FVLETIARVPYFAFISVLHMYESFGWWR-RADYLKVHFAESWNEMHHLLIMEEL----GGNAWWFDRFLAQHIAVAYYFV 197 (294)
Q Consensus 123 ifLETVA~VPGmv~~~~rHL~s~~~~~R-d~~~I~tlleEAeNErmHLltf~~l----~~p~~~~~R~l~~~~q~~fy~~ 197 (294)
+++|-++|.-|=-.++...++..+...- +...-+.+...|.-|+-|..++.++ ++...+...+.. .+.++..
T Consensus 17 ~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~ 93 (154)
T cd07908 17 LLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTG 93 (154)
T ss_pred HHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCc
Confidence 5678888888877777788887665432 3456678888999999999877665 332212211110 0111111
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHHHHHHHHhh
Q 022654 198 TVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231 (294)
Q Consensus 198 f~~~YlvsPr~ahRfvgyLEEEAV~TYT~~L~ei 231 (294)
-.+...-++.-+-++.--+|+.|+..|.++++..
T Consensus 94 ~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~ 127 (154)
T cd07908 94 KYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI 127 (154)
T ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0111233555688999999999999999998865
No 10
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=53.05 E-value=88 Score=29.22 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=50.5
Q ss_pred HHHHHHHhHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHHHHHHHHHhh
Q 022654 157 VHFAESWNEMHHLLIMEELG-----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231 (294)
Q Consensus 157 tlleEAeNErmHLltf~~l~-----~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TYT~~L~ei 231 (294)
.+.+-++.|-.||-+|.+.- .|+ +..-+-.+.. |- +=.+.=|+++|+++-|++-+|+--.+-|.+-|+++
T Consensus 75 ~l~em~d~E~~HL~~f~~~l~e~~vRPs--ll~P~W~~~~--Fa-lGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L 149 (204)
T COG2941 75 QLKEMADEEIDHLAWFEQRLLELGVRPS--LLNPLWYAAA--FA-LGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLREL 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc--HHHHHHHHHH--HH-HHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667889998887752 566 3333333222 22 22457789999999999999999999999999887
Q ss_pred c
Q 022654 232 G 232 (294)
Q Consensus 232 ~ 232 (294)
+
T Consensus 150 ~ 150 (204)
T COG2941 150 P 150 (204)
T ss_pred h
Confidence 5
No 11
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=39.94 E-value=55 Score=26.81 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHhc----CCc--hHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHHH
Q 022654 150 RRADYLKVHFAESWNEMHHLLIMEELG----GNA--WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223 (294)
Q Consensus 150 Rd~~~I~tlleEAeNErmHLltf~~l~----~p~--~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~T 223 (294)
.|...-+.+..-|+.|+-|..+|.++. +|. .++. ..|+- .+.=++.|..+.++..-.|+.|+..
T Consensus 25 ~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~l~~~~g~~~~l~~~~~~E~~ai~~ 94 (125)
T cd01044 25 KDPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLK--------IFFYK--LLARIFGPTFVLKLLERGEERAIEK 94 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHH--------HHHHH--HHHHHHhHHHHHHHHHHhHHhhHhh
Confidence 444555677788999999999988874 231 0111 11111 1233567778899999999999999
Q ss_pred HHHHHHh
Q 022654 224 YDKFIKA 230 (294)
Q Consensus 224 YT~~L~e 230 (294)
|+++.+.
T Consensus 95 Y~~~~~~ 101 (125)
T cd01044 95 YDRLLEE 101 (125)
T ss_pred HHhhhhh
Confidence 9999864
No 12
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=31.51 E-value=2.3e+02 Score=30.76 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHhhhhccccchhhHHHHHHhhcCch--------hHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 104 ESVIMVLDALYRDRDYARFFVLETIARVPY--------FAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 104 ~~~~~~~d~l~~~r~~~R~ifLETVA~VPG--------mv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
+......+.++.++.+-|...++++-..|- +-..++.||++.+- |-.|+=+-=-..=+-..-++
T Consensus 191 rL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLt--------KP~lDl~l~s~~L~~s~~s~ 262 (728)
T KOG0064|consen 191 RLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLT--------KPVLDLILISFTLLDSATSV 262 (728)
T ss_pred HHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhhhccc
Confidence 344456678888899999999999998886 45678899998663 23333221111111111222
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHHHHHHHHH
Q 022654 176 GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229 (294)
Q Consensus 176 ~~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TYT~~L~ 229 (294)
+..+.| ++.+++|..-+++=.+||++.+-.. ||-+-+.|-.++.
T Consensus 263 g~~~~~-------~~~lvv~lTa~iLr~~sP~Fg~Lv~---eeA~r~g~lr~~H 306 (728)
T KOG0064|consen 263 GAAGIT-------LAGLVVYLTAFILRAVSPKFGKLVA---EEAARKGYLRYLH 306 (728)
T ss_pred cccchh-------hhhhHHHHHHHHHHHhCCchhhHHH---HHHhhccHHHHHH
Confidence 332322 4556677777899999999876332 3333444444443
No 13
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=29.47 E-value=2.7e+02 Score=21.57 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=49.1
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHH
Q 022654 150 RRADYLKVHFAESWNEMHHLLIMEELG-------GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222 (294)
Q Consensus 150 Rd~~~I~tlleEAeNErmHLltf~~l~-------~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~ 222 (294)
.+.+.-..+..-|..|+.|..++.++. -|..-............+.. -......+++.+-+..--+|..|+.
T Consensus 25 ~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~E~~~~~ 103 (139)
T cd01045 25 KDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFK-KALESLMDPLEALRLAIEIEKDAIE 103 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHH-HHHHhccCHHHHHHHHHHHHHHHHH
Confidence 333445566778899999998776662 12210111111111111110 1244566777888889999999999
Q ss_pred HHHHHHHhhc
Q 022654 223 TYDKFIKAQG 232 (294)
Q Consensus 223 TYT~~L~ei~ 232 (294)
.|.++++..+
T Consensus 104 ~Y~~~~~~~~ 113 (139)
T cd01045 104 FYEELAEKAE 113 (139)
T ss_pred HHHHHHHHcC
Confidence 9999998764
No 14
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=25.44 E-value=1.6e+02 Score=26.53 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=29.5
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhhcccccCCCCCHHHHhhcc
Q 022654 208 MAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYT 249 (294)
Q Consensus 208 ~ahRfvgyLEEEAV~TYT~~L~ei~g~~~~~pAP~iAi~YW~ 249 (294)
+|+.+|.||.+-=.+.|.+.+++.+|.= -|.-..|.+-|.
T Consensus 57 FCq~LvDYlSaGHF~iYe~i~~k~~~~g--~~~l~la~kI~p 96 (162)
T COG3160 57 FCQSLVDYLSAGHFSIYERILHKLEGNG--DRQLALAAKIWP 96 (162)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccC--cHHHHHHHHHHH
Confidence 7999999999999999999999976311 133444555554
No 15
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.32 E-value=43 Score=32.93 Aligned_cols=17 Identities=24% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHhhcCchhHHHHHHH
Q 022654 125 LETIARVPYFAFISVLH 141 (294)
Q Consensus 125 LETVA~VPGmv~~~~rH 141 (294)
||..+|+||.|+|.+.-
T Consensus 109 lE~l~gIPGTVGGAv~m 125 (334)
T PRK00046 109 LENLALIPGTVGAAPIQ 125 (334)
T ss_pred hHHhcCCCcchhHHHHh
Confidence 89999999999999876
No 16
>PF13030 DUF3891: Protein of unknown function (DUF3891)
Probab=22.11 E-value=5.8e+02 Score=23.53 Aligned_cols=116 Identities=8% Similarity=0.093 Sum_probs=79.8
Q ss_pred ccccCCCCCCCCCCcCccccceeEeecCCceeeeccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhHHHHHH
Q 022654 30 TLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109 (294)
Q Consensus 30 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~P~~~~d~~a~~~v~~~r~~fd~~~t~~~~~~ 109 (294)
..||.... +........+-..+.++|+.+..-+ ..|.|+.+.+.|.+|.|--....+...+.++|.
T Consensus 26 a~~w~~~~--F~~~~~~~e~l~Ai~~HD~gW~~~d---~~P~ln~~~g~P~~F~~~p~~~~~~~~~~gi~~--------- 91 (221)
T PF13030_consen 26 ARHWGNED--FARPEPWEETLLAIYEHDDGWIEWD---AAPILNDETGAPYDFMDYPLQEKLAFYRRGIDE--------- 91 (221)
T ss_pred HHHhcccc--ccCcchHHHHHHHHHhhhhhhhhhc---cCCccccccCCccchhhCChhHHHHHHHHHHHH---------
Confidence 44555541 2222345556666777887766555 568899989999999998877777777777665
Q ss_pred hhhhccccchhhHHHHHHhhcCchhHHHHHHHHHHhcCcccc-cchHHHHHHHHHhHHHHHHHHHHhc
Q 022654 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMHHLLIMEELG 176 (294)
Q Consensus 110 ~d~l~~~r~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd-~~~I~tlleEAeNErmHLltf~~l~ 176 (294)
..+.=||.+...-+|..++.+-..+ ..-+...++|.+..+-+|+.-+...
T Consensus 92 -----------------~~~~~~yaaLL~S~H~~~ly~~~~~~~~~~~~Fl~~e~~rQ~~l~~~L~~~ 142 (221)
T PF13030_consen 92 -----------------AEQKSPYAALLCSMHYSFLYENRTGQSPEVDAFLDEEEQRQERLRAELGID 142 (221)
T ss_pred -----------------HHHcCCHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2334466667777898877764442 2457788888888888888777665
No 17
>PLN02975 complex I subunit
Probab=21.79 E-value=1.1e+02 Score=25.44 Aligned_cols=40 Identities=5% Similarity=-0.078 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhH
Q 022654 177 GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220 (294)
Q Consensus 177 ~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEA 220 (294)
+|+ ++-..+.....+.+.-.|.+.| -+.|.||.|+.|.+-
T Consensus 51 ~~~-~~~~~mr~ag~iG~~gGf~~aY---q~S~~Rf~G~~EN~r 90 (97)
T PLN02975 51 KPG-IRGPSMVTGGLIGLMGGFMYAY---QNSAGRLMGFFPNEG 90 (97)
T ss_pred Ccc-ccchHHHHHHHHHHhhhHHhhh---cccchhhcCCCCCHH
Confidence 455 3444454444444444444444 588999999999764
No 18
>PRK10467 hydrogenase 2 large subunit; Provisional
Probab=21.37 E-value=4.7e+02 Score=27.81 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=46.3
Q ss_pred hccccchhh-HHHHHHhhcCchhH--HHHHHHHHHhcCcc--cccchHHHHHHHHHhHHHHHHHHHHhcCCc
Q 022654 113 LYRDRDYAR-FFVLETIARVPYFA--FISVLHMYESFGWW--RRADYLKVHFAESWNEMHHLLIMEELGGNA 179 (294)
Q Consensus 113 l~~~r~~~R-~ifLETVA~VPGmv--~~~~rHL~s~~~~~--Rd~~~I~tlleEAeNErmHLltf~~l~~p~ 179 (294)
+.++|...- ..+.|-|-||=+.+ .+.++=+-...|.. +++.+|+.++.|+|.=.-||+-|.-+..|.
T Consensus 44 ileGR~p~dal~l~~RICGiC~~aH~~A~~~AlE~a~gi~vP~~A~~iR~l~~e~eri~sHl~hfy~l~~~D 115 (567)
T PRK10467 44 IVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 (567)
T ss_pred HHcCCCHHHHHHHhchhceeCHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444554444 36667777776665 34455555566653 345789999999999999999888777777
Done!