Query 022654
Match_columns 294
No_of_seqs 153 out of 367
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lko_A Rubrerythrin all-iron(I 23.9 64 0.0022 27.5 3.7 148 118-281 12-186 (191)
2 4am5_A Bacterioferritin; metal 22.9 97 0.0033 24.8 4.5 51 118-174 10-60 (159)
3 1j30_A 144AA long hypothetical 18.9 1.4E+02 0.0046 23.7 4.5 52 118-175 12-63 (144)
4 3rnv_A HC-Pro, helper componen 18.0 66 0.0022 27.7 2.5 35 193-238 44-82 (158)
5 2fkz_A Bacterioferritin; ferro 15.2 1.8E+02 0.0061 22.3 4.3 51 118-175 10-61 (155)
6 1krq_A Ferritin; H-chain like 11.3 2.6E+02 0.0088 22.7 4.3 52 118-175 9-60 (167)
7 2vpb_B B-cell CLL/lymphoma 9 p 10.2 1E+02 0.0035 20.4 1.2 29 5-33 3-35 (35)
8 1eum_A Ferritin 1; ECFTNA, met 9.8 3.1E+02 0.011 22.0 4.3 52 118-175 9-60 (165)
9 2oku_A Acyl-COA dehydrogenase 9.2 7.8E+02 0.027 20.3 12.0 108 127-236 2-122 (131)
10 4di0_A Rubrerythrin; ssgcid, s 8.7 4.8E+02 0.017 21.1 5.0 53 117-175 15-67 (144)
No 1
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.91 E-value=64 Score=27.52 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=78.7
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhc--CC------------chHHH
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN------------AWWFD 183 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~--~p------------~~~~~ 183 (294)
-++..+-.|+-|+.=|+.++.... .-|+ .+.=+.+.++|++|+.|-+.+.+.- +. +. ..
T Consensus 12 ~Ln~a~~~E~~A~~~Yl~~A~~a~---~~G~---~~iA~~f~~~A~eE~~HA~~~~~~l~gg~~~i~~~~p~~~~~s-~~ 84 (191)
T 1lko_A 12 NILTAFAGESQARNRYNYFGGQAK---KDGF---VQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIAD-TH 84 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCCCCCCCCCC-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HCCc---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCcCCccccCC-HH
Confidence 577888899999888887776543 2333 2334677889999999998766653 21 11 22
Q ss_pred HHHHHHHHHH-HH--HHHHHHHhh-----cccchhhhhhhhhhhHH--HHHHHHHHhhc-cc-ccCCCCCHHHHhhccCC
Q 022654 184 RFLAQHIAVA-YY--FVTVFMYVI-----SPRMAYHFSECVESHAF--ETYDKFIKAQG-EK-LKKMPAPAVAIKYYTGG 251 (294)
Q Consensus 184 R~l~~~~q~~-fy--~~f~~~Ylv-----sPr~ahRfvgyLEEEAV--~TYT~~L~ei~-g~-~~~~pAP~iAi~YW~l~ 251 (294)
-.+-..+.+= +- -+|--++-+ ...++--|-.++++|.. ..|...|+.++ |+ ++. .....|.-.
T Consensus 85 e~l~~al~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~~~~~~~-----~~~~~~~C~ 159 (191)
T 1lko_A 85 ANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGRVFLR-----EQATKWRCR 159 (191)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEE-----EEEEEEEET
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-----CCCceEEEC
Confidence 2232222222 11 111111111 23344455555555554 56888888876 43 221 012257642
Q ss_pred -CccchhhhhhccCCCCCCCCCCCcceeeEE
Q 022654 252 -DLYLFDEFQTARLPNSRRPKIGKERVLFLA 281 (294)
Q Consensus 252 -D~~l~De~~~~R~de~rrp~~~~l~Dvf~~ 281 (294)
.=+.+| ..-.|+ .=|.|..=++-|..
T Consensus 160 ~CG~~~~---g~~~p~-~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 160 NCGYVHE---GTGAPE-LCPACAHPKAHFEL 186 (191)
T ss_dssp TTCCEEE---EEECCS-BCTTTCCBGGGEEE
T ss_pred CCCCEee---CCCCCC-CCCCCcCCHHHHHh
Confidence 224444 001233 55777766666643
No 2
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=22.91 E-value=97 Score=24.82 Aligned_cols=51 Identities=29% Similarity=0.277 Sum_probs=36.2
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHH
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~ 174 (294)
.+++.+-.|..|..=|+..+.+.- ..|+ .+.-+.+.++|.+|+.|...+.+
T Consensus 10 ~LN~~l~~El~A~~~Y~~~a~~~~---~~g~---~~~a~~f~~~a~eE~~HA~~l~~ 60 (159)
T 4am5_A 10 YLNRGLRSELTAVSQYWLHYRMLE---DWGY---KDLAKKWRAESIEEMAHADKFVE 60 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHTC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999888876554331 2232 23456778999999999986655
No 3
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=18.87 E-value=1.4e+02 Score=23.71 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=37.1
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
.+++.+-.|+-|..=|+..+.+.- .-|+ .+.-+.+.++|.+|+.|-+.+.+.
T Consensus 12 ~Ln~a~~~E~~A~~~Y~~~A~~a~---~~g~---~~~a~~f~~~A~eE~~HA~~~~~~ 63 (144)
T 1j30_A 12 NLKQGFIGESMANRRYLYFAKRAD---EEGY---PEIAGLLRSIAEGETAHAFGHLDF 63 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999888877766433 1222 234567889999999999766544
No 4
>3rnv_A HC-Pro, helper component proteinase; cysteine protease, proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Probab=18.02 E-value=66 Score=27.70 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhHHHHHHHHHHhh--c--ccccCC
Q 022654 193 AYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ--G--EKLKKM 238 (294)
Q Consensus 193 ~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TYT~~L~ei--~--g~~~~~ 238 (294)
-|-|+|..|++ .+-|+-++.+|++++|+ + |+|+.+
T Consensus 44 CYinIFlaMl~-----------nV~e~~ak~Ftk~Vrd~~v~~LG~WPt~ 82 (158)
T 3rnv_A 44 CYINIFLAMLV-----------NVKESQAKEFTKVVRDKLVGELGKWPTL 82 (158)
T ss_dssp TTHHHHHHHGG-----------GSCGGGHHHHHHHHHHTHHHHHCSSCBH
T ss_pred HHHHHHHHHHc-----------cCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 45666666554 45677888999999974 4 888654
No 5
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=15.23 E-value=1.8e+02 Score=22.27 Aligned_cols=51 Identities=25% Similarity=0.220 Sum_probs=32.2
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHH-HHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF-AESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tll-eEAeNErmHLltf~~l 175 (294)
.+++.+-.|..|..=|...+... . ..++. -++..| ++|.+|+.|...+.+.
T Consensus 10 ~Ln~~l~~E~~a~~~Y~~~a~~~--~-~~~~~----~l~~~f~~~a~eE~~Ha~~l~e~ 61 (155)
T 2fkz_A 10 HLNKILGNELIAINQYFLHARMY--E-DWGLE----KLGKHEYHESIDEMKHADKLIKR 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--H-HTTCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H-hCChH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888777666544331 1 11221 255555 9999999999866554
No 6
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=11.25 E-value=2.6e+02 Score=22.68 Aligned_cols=52 Identities=17% Similarity=-0.002 Sum_probs=37.7
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
.+++.+-.|.-|.-=|+..+.... . -|+ .+.-+.+.++|+.|+.|-.-|.+.
T Consensus 9 ~Ln~~i~~El~A~~~Yl~~a~~~~--~-~gl---~~~a~~f~~~a~eE~~HA~~l~~~ 60 (167)
T 1krq_A 9 LLNEQINKEMYAANLYLSMSSWCY--E-NSL---DGAGAFLFAHASEESDHAKKLITY 60 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--H-TTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--H-cCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999888876665433 1 222 355678889999999999877665
No 7
>2vpb_B B-cell CLL/lymphoma 9 protein; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_B 2vp7_B 2vpg_B* 2vpe_B*
Probab=10.18 E-value=1e+02 Score=20.42 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=22.4
Q ss_pred ccccccccc----hhhhhhcccccccccccccc
Q 022654 5 LSQTVSVFS----NKAINLKSVASFNTIKTLRF 33 (294)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~ 33 (294)
.++.+=||| ||++++-+-|.+.|+-.+||
T Consensus 3 ~~~~vyVFsT~lANkaAeaVl~G~~~sIIayH~ 35 (35)
T 2vpb_B 3 AAKVVYVFSTEMANKAAEAVLKGQVETIVSFHI 35 (35)
T ss_dssp CCCCCEEECHHHHHHHHHHHHTTSCSSTTCCCC
T ss_pred cccEEEEEEhHHhhhHHHHHHcCcccceeeecC
Confidence 456677887 46667788889999888887
No 8
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=9.78 E-value=3.1e+02 Score=22.05 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=37.7
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
.+++.+-.|.-|.-=|+..+...- ..|+ .|.=+.+.++|..|+.|-.-|.+.
T Consensus 9 ~LN~~i~~El~A~~~Yl~~a~~~~---~~gl---~~~a~~f~~~a~eE~~HA~~l~~~ 60 (165)
T 1eum_A 9 KLNEQMNLELYSSLLYQQMSAWCS---YHTF---EGAAAFLRRHAQEEMTHMQRLFDY 60 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HCCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999888877665442 2222 356678889999999999876654
No 9
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=9.24 E-value=7.8e+02 Score=20.31 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=54.3
Q ss_pred HhhcCchhHHHHH-HHHHH-hcCcccccch--HHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHH-HHHHHHHHHHHHH
Q 022654 127 TIARVPYFAFISV-LHMYE-SFGWWRRADY--LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ-HIAVAYYFVTVFM 201 (294)
Q Consensus 127 TVA~VPGmv~~~~-rHL~s-~~~~~Rd~~~--I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~-~~q~~fy~~f~~~ 201 (294)
+||++.|..-|+- .++++ -...-=...+ ++..+.+-.+..-=..-..+-.++.-..| |++. +....=..++.++
T Consensus 2 VVAAIr~ItnGtyl~~irE~y~~~~~~~el~~l~~rl~k~~~~~ee~v~~vke~~nqe~~D-f~ARrLvemaa~ii~s~L 80 (131)
T 2oku_A 2 VVAAIRHITTGTYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIAFVTEQKDQELLD-FQARRLVEMTAHAVFGHL 80 (131)
T ss_dssp HHHHTHHHHHTHHHHHHHHTGGGCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eeeeecccccccHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5888888655543 44555 2211111233 44444444444444444444444442222 2211 1111112222333
Q ss_pred Hh-------hcccchhhhhhhhhhhHHHHHHHHHHhhc-cccc
Q 022654 202 YV-------ISPRMAYHFSECVESHAFETYDKFIKAQG-EKLK 236 (294)
Q Consensus 202 Yl-------vsPr~ahRfvgyLEEEAV~TYT~~L~ei~-g~~~ 236 (294)
.+ +.-+.|+.|+-|-|+|....|+ ||+--+ +.++
T Consensus 81 Ll~dA~k~elf~kSA~Vyv~~ae~ev~k~~~-~I~~f~~e~L~ 122 (131)
T 2oku_A 81 LMLAANDDDSFRQSAEVYLRYGQAEQEKIDS-YVRAFRPEELT 122 (131)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-HHHHCCGGGCC
T ss_pred HHHHccHHHHHHHHHHHHHHHhHHHHHHHHH-HHHcCCHHHHH
Confidence 33 2456789999999999999887 666543 4443
No 10
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}
Probab=8.66 E-value=4.8e+02 Score=21.06 Aligned_cols=53 Identities=21% Similarity=0.073 Sum_probs=37.5
Q ss_pred cchhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 117 RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 117 r~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
+.+..++--|+-|..=|+.++.+.. .-|+- ..=+.+.+.|+||+.|-..+.++
T Consensus 15 ~nL~~afagEs~A~~~Y~~~A~~A~---~eG~~---~iA~~F~~~A~~E~~HA~~~~~~ 67 (144)
T 4di0_A 15 ENLKYAFAGESQANRRYLYFASKAD---VEGQN---DIAALFRSTAEGETGHAHGHLEY 67 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHTCH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HCChH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999988776543 12221 12256678899999999866654
Done!