Query 022654
Match_columns 294
No_of_seqs 153 out of 367
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 08:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yuza1 a.25.1.1 (A:23-157) Ni 27.1 33 0.0024 24.8 4.3 52 118-175 10-61 (135)
2 d1lkoa1 a.25.1.1 (A:2-147) Rub 15.2 74 0.0054 23.1 4.0 52 118-175 11-62 (146)
3 d1nnqa1 a.25.1.1 (A:2-134) Rub 14.2 2.1E+02 0.016 20.6 7.1 53 117-175 9-61 (133)
4 d1uxya1 d.145.1.2 (A:3-200) Ur 13.7 12 0.00089 30.1 -1.1 18 124-141 101-118 (198)
5 d1j30a_ a.25.1.1 (A:) Hypothet 13.3 98 0.0071 22.1 4.2 52 118-175 10-61 (141)
6 d2fkza1 a.25.1.1 (A:1-154) Bac 13.3 89 0.0065 22.7 4.0 51 118-174 10-60 (154)
7 d2do1a1 a.140.2.1 (A:5-46) Nuc 11.1 29 0.0021 22.1 0.3 11 210-220 31-41 (42)
8 d1hska1 d.145.1.2 (A:15-208) U 10.0 44 0.0032 26.3 1.2 19 123-141 118-136 (194)
9 d2htna1 a.25.1.1 (A:1-158) Bac 8.3 1.9E+02 0.014 20.8 4.3 51 118-174 10-60 (158)
10 d1z9ha1 a.45.1.1 (A:213-373) M 7.2 3.9E+02 0.028 20.4 6.0 78 172-263 52-133 (161)
No 1
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=27.09 E-value=33 Score=24.83 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=36.2
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
.+++++-.|.-|..=|+..+.+.- ..|+ .+.-+.+.++|.+|+.|...+.++
T Consensus 10 ~L~~a~~~E~~A~~~Yl~~A~~~~---~~g~---~~ia~~f~~~A~eE~~HA~~l~~~ 61 (135)
T d1yuza1 10 NLKAAIAGETGAHAKYTAFAKAAR---EQGY---EQIARLFEATAAAELIHIGLEYAL 61 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---HCCC---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888877776665442 1121 234578899999999999755543
No 2
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=15.16 E-value=74 Score=23.07 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=38.1
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
.+.+++=-|.-|..=|+..+.+..- .|+ .+.-+.+.++|..|+.|...+.++
T Consensus 11 ~L~~a~~~E~~A~~~Y~~~A~~a~~---~g~---~~ia~~f~~~A~eE~~HA~~l~~~ 62 (146)
T d1lkoa1 11 NILTAFAGESQARNRYNYFGGQAKK---DGF---VQISDIFAETADQEREHAKRLFKF 62 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---TTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---CCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877665431 221 234568889999999999888877
No 3
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=14.20 E-value=2.1e+02 Score=20.59 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=38.6
Q ss_pred cchhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 117 RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 117 r~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
+++++++--|+-|..=|+.++.+.= .-|+ ...=+.+.++|.+|+.|-..+.++
T Consensus 9 ~~L~~A~~gE~~A~~~Y~~~A~~a~---~~G~---~~lA~~f~~~A~eE~~HA~~~~~~ 61 (133)
T d1nnqa1 9 KFLEEAFAGESMAHMRYLIFAEKAE---QEGF---PNIAKLFRAIAYAEFVHAKNHFIA 61 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HCCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998887765321 2222 234567888999999999766554
No 4
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=12 Score=30.14 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.0
Q ss_pred HHHHhhcCchhHHHHHHH
Q 022654 124 VLETIARVPYFAFISVLH 141 (294)
Q Consensus 124 fLETVA~VPGmv~~~~rH 141 (294)
=+|..+++||.|+|.+.-
T Consensus 101 G~E~l~gIPGtvGGai~m 118 (198)
T d1uxya1 101 GLENLALIPGCVGSSPIQ 118 (198)
T ss_dssp SCGGGTTCCSBGGGTTTT
T ss_pred cchhhcccccccchhhhh
Confidence 379999999999997643
No 5
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=13.34 E-value=98 Score=22.07 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=35.0
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHh
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l 175 (294)
.+++.+--|+-|..=|+..+.+.- ..|+ .+.-+.+.++|.+|+.|...+.++
T Consensus 10 ~L~~a~~~E~~A~~~Y~~~a~~a~---~~g~---~~iA~~f~~~A~eE~~HA~~~~~~ 61 (141)
T d1j30a_ 10 NLKQGFIGESMANRRYLYFAKRAD---EEGY---PEIAGLLRSIAEGETAHAFGHLDF 61 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHTC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HCCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888777777665433 1222 234467889999999999765554
No 6
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=13.33 E-value=89 Score=22.69 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=36.3
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHH
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~ 174 (294)
.+++.+=+|..|..=|+..+.+.- ..++ .+.-+.+.++|..|+.|...+.+
T Consensus 10 ~Ln~~l~~E~~A~~~Y~~~a~~~~---~~~~---~~la~~f~~~a~eE~~Ha~~l~~ 60 (154)
T d2fkza1 10 HLNKILGNELIAINQYFLHARMYE---DWGL---EKLGKHEYHESIDEMKHADKLIK 60 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HcCh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999888887665442 2222 24456778899999999976554
No 7
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.10 E-value=29 Score=22.08 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.0
Q ss_pred hhhhhhhhhhH
Q 022654 210 YHFSECVESHA 220 (294)
Q Consensus 210 hRfvgyLEEEA 220 (294)
.|+-.|||||+
T Consensus 31 ~rlqayleeh~ 41 (42)
T d2do1a1 31 HRLQAYLEEHA 41 (42)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 68888888885
No 8
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=9.99 E-value=44 Score=26.28 Aligned_cols=19 Identities=21% Similarity=-0.082 Sum_probs=16.5
Q ss_pred HHHHHhhcCchhHHHHHHH
Q 022654 123 FVLETIARVPYFAFISVLH 141 (294)
Q Consensus 123 ifLETVA~VPGmv~~~~rH 141 (294)
.-+|..+++||.|+|.+..
T Consensus 118 ~g~e~~~gipgtvGGai~m 136 (194)
T d1hska1 118 TGLEFACGIPGSIGGAVYM 136 (194)
T ss_dssp ESCGGGTTCCSBHHHHHHH
T ss_pred ccccccCCcceeehhhhhc
Confidence 4688999999999999874
No 9
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=8.33 E-value=1.9e+02 Score=20.83 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=34.7
Q ss_pred chhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHH
Q 022654 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174 (294)
Q Consensus 118 ~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~ 174 (294)
.+++.+-.|..|..=|+..+.+.- ..++ .+.-+.+.++|..|+.|...+.+
T Consensus 10 ~Ln~~l~~E~~A~~~Y~~~a~~~~---~~~~---~~la~~f~~~a~eE~~Ha~~l~e 60 (158)
T d2htna1 10 YLNKLLGNELVAINQYFLHARMFK---NWGL---KRLNDVEYHESIDEMKHADRYIE 60 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---cCCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899988887776665542 1111 23446778889999999965544
No 10
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=7.23 E-value=3.9e+02 Score=20.43 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=40.3
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccch--hhhhhhhhhhHHHHHHHHHHhhc--ccccCCCCCHHHHhh
Q 022654 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMA--YHFSECVESHAFETYDKFIKAQG--EKLKKMPAPAVAIKY 247 (294)
Q Consensus 172 f~~l~~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~a--hRfvgyLEEEAV~TYT~~L~ei~--g~~~~~pAP~iAi~Y 247 (294)
+-++++=+ +++|.++. |....+||+|+.|.- |+...-+.++=...-..+++++. +.+=.-..|.+|
T Consensus 52 i~~~~~f~-~~~r~~~~------~~Ga~~M~~I~krlkkk~~~~dd~r~~L~~~ld~f~~~~l~~~~F~gGd~P~lA--- 121 (161)
T d1z9ha1 52 IVREGKFG-AVEGAVAK------YMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLA--- 121 (161)
T ss_dssp HHHHSCCC-HHHHHHHH------HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHCSSCSBTTBTSCCHH---
T ss_pred Hhcccccc-HHHHHHHH------HcCHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHhcCCCCccCCCCCcHH---
Confidence 33445556 68888876 445578899998865 44433333333333333444442 123222345544
Q ss_pred ccCCCccchhhhhhcc
Q 022654 248 YTGGDLYLFDEFQTAR 263 (294)
Q Consensus 248 W~l~D~~l~De~~~~R 263 (294)
|+.+|-+++.++
T Consensus 122 ----Dlavfg~l~~~~ 133 (161)
T d1z9ha1 122 ----DLAVYGVLRVME 133 (161)
T ss_dssp ----HHHHHHHHHTTT
T ss_pred ----HHHHHhhhhhhh
Confidence 445555555544
Done!