Query 022655
Match_columns 294
No_of_seqs 114 out of 270
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0p_A TAP42, type 2A phosphat 99.7 6.7E-18 2.3E-22 152.8 10.8 94 1-112 121-233 (234)
2 3qc1_A Immunoglobulin-binding 99.7 4.4E-17 1.5E-21 148.1 10.2 73 18-111 170-242 (243)
3 3ka5_A Ribosome-associated pro 31.9 31 0.0011 24.6 2.7 16 210-226 8-23 (65)
4 3k2t_A LMO2511 protein; lister 31.7 20 0.00069 24.8 1.6 12 210-221 8-19 (57)
5 3lyv_A Ribosome-associated fac 21.0 54 0.0019 23.3 2.3 13 209-221 8-20 (66)
6 2v66_B Nuclear distribution pr 16.6 3.8E+02 0.013 20.8 8.1 49 32-112 3-51 (111)
7 1gup_A Galactose-1-phosphate u 13.5 72 0.0025 29.3 1.8 16 205-220 110-127 (348)
8 4ham_A LMO2241 protein; struct 12.3 75 0.0026 24.7 1.3 19 197-215 23-41 (134)
9 2jee_A YIIU; FTSZ, septum, coi 11.2 3.6E+02 0.012 19.8 4.6 30 83-112 7-36 (81)
10 3neu_A LIN1836 protein; struct 10.0 1.3E+02 0.0043 23.1 1.9 18 197-214 22-39 (125)
No 1
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.7e-18 Score=152.76 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHhcc-------------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 022655 1 MELVPEEELEAVAQA-------------------KPTAFTDQRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPS 61 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~-------------------~~~d~a~~R~~KIaryK~eKel~~kL~~L~~~~~~~~r~~~~~~~~ 61 (294)
+||++.++...+... ...+|+.+|+.||+|||++|+|+++|+.|+.+.
T Consensus 121 y~ll~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~R~~KI~rfK~eKel~~kL~~L~~~~------------- 187 (234)
T 2v0p_A 121 YKLLDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQLKRKEKIELFQRNKEISTKLHCLELEL------------- 187 (234)
T ss_dssp TTCCCHHHHHHHHTCSSTTSCCHHHHSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCHHHHHHHHhhhccccchhhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 478888887766441 135899999999999999999999999998742
Q ss_pred CCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 022655 62 APVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAVK 112 (294)
Q Consensus 62 ~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~~EleiL~~~~ 112 (294)
+.+.+ +++|||++|++||++|++|+++||++|++|.+|++||++++
T Consensus 188 ---~~~~~--D~~deE~~Re~~l~~L~~~~~~s~~~Lesi~~ElemL~~~~ 233 (234)
T 2v0p_A 188 ---KNNDE--DHDHDELLRELYLMRLHHFSLDTINNIEQNLFECEMLSNFL 233 (234)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---hcccc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 34579999999999999999999999999999999999874
No 2
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=99.70 E-value=4.4e-17 Score=148.14 Aligned_cols=73 Identities=29% Similarity=0.405 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 022655 18 TAFTDQRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDL 97 (294)
Q Consensus 18 ~d~a~~R~~KIaryK~eKel~~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~ 97 (294)
.+|+.+|+.||+|||++|+|+++|+.|+...+ . +++|||++|++||++|++|+++||++
T Consensus 170 ~~~a~rR~~KI~rfK~eKeLe~kL~~L~~~~e----------------~-----~~~DeE~~Re~yL~~L~l~~~~s~~~ 228 (243)
T 3qc1_A 170 VAMASQRQAKIERYKQKKEVEHRLSALKSAVE----------------S-----GQADDERVREYHLLHLRRWIAVSLEE 228 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H-----TCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------c-----CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999988543 1 24599999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 022655 98 LEMLKKEEDMLSAV 111 (294)
Q Consensus 98 L~si~~EleiL~~~ 111 (294)
|+||.+|++||+++
T Consensus 229 Lesi~~EleiL~~r 242 (243)
T 3qc1_A 229 LESIDQEIKILKEK 242 (243)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999875
No 3
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=31.89 E-value=31 Score=24.55 Aligned_cols=16 Identities=50% Similarity=0.441 Sum_probs=11.8
Q ss_pred CCCCcccHHHHHHHHHH
Q 022655 210 HRLPTMSIEEAGLKEME 226 (294)
Q Consensus 210 ~~LPTMTVeE~~~~E~e 226 (294)
+.+|+|||||.. .+|+
T Consensus 8 ~~~kpMsveEAv-~qme 23 (65)
T 3ka5_A 8 FAIKPMSEEEAV-LEME 23 (65)
T ss_dssp SCCSCBCHHHHH-HHHH
T ss_pred ecCCCCCHHHHH-HHHH
Confidence 478999999984 3443
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=31.70 E-value=20 Score=24.78 Aligned_cols=12 Identities=42% Similarity=0.349 Sum_probs=8.2
Q ss_pred CCCCcccHHHHH
Q 022655 210 HRLPTMSIEEAG 221 (294)
Q Consensus 210 ~~LPTMTVeE~~ 221 (294)
+.+|+|||+|..
T Consensus 8 ~~~kpmsveEAv 19 (57)
T 3k2t_A 8 FSLKPMDSEEAV 19 (57)
T ss_dssp ---CCBCHHHHH
T ss_pred ccCCCCCHHHHH
Confidence 479999999984
No 5
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=21.01 E-value=54 Score=23.31 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=10.7
Q ss_pred CCCCCcccHHHHH
Q 022655 209 MHRLPTMSIEEAG 221 (294)
Q Consensus 209 G~~LPTMTVeE~~ 221 (294)
-+.+++|||||..
T Consensus 8 ~~~~kpMsveEAv 20 (66)
T 3lyv_A 8 NVTLKPMDVEEAR 20 (66)
T ss_dssp CCCCCEECHHHHH
T ss_pred EccCCCCCHHHHH
Confidence 3479999999984
No 6
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=16.55 E-value=3.8e+02 Score=20.79 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022655 32 KRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAV 111 (294)
Q Consensus 32 K~eKel~~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~~EleiL~~~ 111 (294)
|+.++|+.+...|.. ..+-|-.-+...-..+...+.+++.|+.-|...
T Consensus 3 k~~rdL~~~~~~L~~--------------------------------E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~ 50 (111)
T 2v66_B 3 QRNRDLQADNQRLKY--------------------------------EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI 50 (111)
T ss_dssp HHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888764 335566666667777888899999999999875
Q ss_pred H
Q 022655 112 K 112 (294)
Q Consensus 112 ~ 112 (294)
.
T Consensus 51 ~ 51 (111)
T 2v66_B 51 K 51 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=13.55 E-value=72 Score=29.35 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=14.6
Q ss_pred cCCCCC--CCCcccHHHH
Q 022655 205 VFQPMH--RLPTMSIEEA 220 (294)
Q Consensus 205 VFgpG~--~LPTMTVeE~ 220 (294)
||.|.| +|++||++++
T Consensus 110 i~sp~H~~~l~~l~~~~~ 127 (348)
T 1gup_A 110 CFSPDHSKTLPELSVAAL 127 (348)
T ss_dssp ESCSCTTCCGGGSCHHHH
T ss_pred EcCCcccCChhhCCHHHH
Confidence 799999 7899999987
No 8
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=12.26 E-value=75 Score=24.68 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCCCCCCcc
Q 022655 197 ERERMAAQVFQPMHRLPTM 215 (294)
Q Consensus 197 ~R~~lq~~VFgpG~~LPTM 215 (294)
-|+.+..+.|.||..||+-
T Consensus 23 i~~~I~~G~l~pG~~LPse 41 (134)
T 4ham_A 23 IKEQVVKGVLQEGEKILSI 41 (134)
T ss_dssp HHHHHHHTSSCTTCEECCH
T ss_pred HHHHHHcCCCCCCCCCccH
Confidence 4999999999999999974
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=11.18 E-value=3.6e+02 Score=19.78 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 022655 83 WLTTISLAVCKALDLLEMLKKEEDMLSAVK 112 (294)
Q Consensus 83 ~l~~L~l~~~~a~~~L~si~~EleiL~~~~ 112 (294)
.+.+|.--|-.|++.+..+.+|++=|+.-.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999998643
No 10
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=9.97 E-value=1.3e+02 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCCCCCCc
Q 022655 197 ERERMAAQVFQPMHRLPT 214 (294)
Q Consensus 197 ~R~~lq~~VFgpG~~LPT 214 (294)
-++.+..+.|.||..|||
T Consensus 22 i~~~I~~g~~~~g~~Lps 39 (125)
T 3neu_A 22 MKKQMITGEWKGEDKLPS 39 (125)
T ss_dssp HHHHHHTTSSCTTCBCCC
T ss_pred HHHHHHhCCCCCCCCCCC
Confidence 389999999999999994
Done!