BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022657
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W77|A Chain A, 2c-methyl-d-erythritol 4-phosphate Cytidylyltransferase
(ispd) From Arabidopsis Thaliana
Length = 228
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 202/221 (91%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
ILLAGG+GKRM +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +
Sbjct: 8 ILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE 67
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190
E I+VDL+F++PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VG
Sbjct: 68 ESIDVDLRFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVG 127
Query: 191 AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTD 250
AAVLGVPAKATIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTD
Sbjct: 128 AAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTD 187
Query: 251 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 291
DVSIVE+LKHPVY+++GSYTNIKVTTPDDLL+AERIL+ S
Sbjct: 188 DVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS 228
>pdb|2YC3|A Chain A, Inhibitors Of The Herbicidal Target Ispd
pdb|2YC5|A Chain A, Inhibitors Of The Herbicidal Target Ispd
Length = 228
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 201/221 (90%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
ILLAGG+GKRM +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +
Sbjct: 8 ILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE 67
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190
E I+VDL F++PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VG
Sbjct: 68 ESIDVDLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVG 127
Query: 191 AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTD 250
AAVLGVPAKATIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTD
Sbjct: 128 AAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTD 187
Query: 251 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 291
DVSIVE+LKHPVY+++GSYTNIKVTTPDDLL+AERIL+ S
Sbjct: 188 DVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS 228
>pdb|2YCM|A Chain A, Inhibitors Of Herbicidal Target Ispd
Length = 227
Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 201/221 (90%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
ILLAGG+GKRM +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +
Sbjct: 7 ILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE 66
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190
E I+VDL F++PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VG
Sbjct: 67 ESIDVDLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVG 126
Query: 191 AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTD 250
AAVLGVPAKATIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTD
Sbjct: 127 AAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTD 186
Query: 251 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 291
DVSIVE+LKHPVY+++GSYTNIKVTTPDDLL+AERIL+ S
Sbjct: 187 DVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS 227
>pdb|1VGT|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGT|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGU|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-
Erythritol Synthase
pdb|1VGU|B Chain B, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-
Erythritol Synthase
Length = 238
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++ A G G+RM PKQYL + Q I +S + VK +V+ P S F +
Sbjct: 13 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLP 71
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALR 188
+ + G ER DSV +GL+ +++ V +HD+ARP + D+ ++L + R
Sbjct: 72 LANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSR 130
Query: 189 VGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE 247
G +L P + T+K A ++ + T+DR LW TPQ +LL EG
Sbjct: 131 TGG-ILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAT 189
Query: 248 VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284
+TD+ S +E+ + EG NIKVT P+DL +AE
Sbjct: 190 ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAE 226
>pdb|3N9W|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Ispd) In Complex With
1,2-Propanediol
pdb|3N9W|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Ispd) In Complex With
1,2-Propanediol
Length = 235
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++ A G G+RM PKQYL + Q I +S + VK +V+ P S F +
Sbjct: 10 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLP 68
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALR 188
+ + G ER DSV +GL+ +++ V +HD+ARP + D+ ++L + R
Sbjct: 69 LANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSR 127
Query: 189 VGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE 247
G +L P + T+K A ++ + T+DR LW TPQ +LL EG
Sbjct: 128 TGG-ILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAT 186
Query: 248 VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284
+TD+ S +E+ + EG NIKVT P+DL +AE
Sbjct: 187 ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAE 223
>pdb|1H3M|A Chain A, Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
Synthetase
pdb|1H3M|B Chain B, Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
Synthetase
Length = 235
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++ A G G+RM PKQYL + Q I +S + VK +V+ P S F +
Sbjct: 10 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLP 68
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALR 188
+ + G ER DSV +GL+ +++ V +HD+ARP + D+ ++L + R
Sbjct: 69 LANHPQITVVDGGDERADSVLTGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSR 127
Query: 189 VGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE 247
G +L P + T+K A ++ + T+DR LW TPQ +LL EG
Sbjct: 128 TGG-ILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAT 186
Query: 248 VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284
+TD+ S +E+ + EG NIKVT P+DL +AE
Sbjct: 187 ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAE 223
>pdb|1I52|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me)
Synthase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
pdb|1INJ|A Chain A, Crystal Structure Of The Apo Form Of
4-Diphosphocytidyl-2-C- Methylerythritol (Cdp-Me)
Synthetase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
pdb|1INI|A Chain A, Crystal Structure Of
4-diphosphocytidyl-2-c-methylerythritol (cdp-me)
Synthetase (ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis, Complexed With Cdp-me And Mg2+
Length = 236
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++ A G G+RM PKQYL + Q I +S + VK +V+ P S F +
Sbjct: 11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLP 69
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALR 188
+ + G ER DSV +GL+ +++ V +HD+ARP + D+ ++L + R
Sbjct: 70 LANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSR 128
Query: 189 VGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE 247
G +L P + T+K A ++ + T+DR LW TPQ +LL EG
Sbjct: 129 TGG-ILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAT 187
Query: 248 VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284
+TD+ S +E+ + EG NIKVT P+DL +AE
Sbjct: 188 ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAE 224
>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Ctp And Mg
pdb|2XWL|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Ctp And Mg
pdb|2XWM|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Cmp
pdb|2XWM|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Cmp
Length = 223
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 10/220 (4%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++ A G G+R+ A PK ++ L G P+ ++ + IV+ P+ +D E+K
Sbjct: 6 VVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTD---ESK 62
Query: 131 EKINVDLKFSLPGK-ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189
+ + G +R +SV L E ++E V +HD+AR L + +V+ AL+
Sbjct: 63 LVFGGEDSVIVSGGVDRTESVALAL-EAAGDAEFVLVHDAARALTPPALIARVVA-ALKE 120
Query: 190 G--AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE 247
G A V G+ TIK ++ V+ T +R L +QTPQ D+L++ + G
Sbjct: 121 GHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARATAGG-- 178
Query: 248 VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287
VTDD S+VE L PV I +G K+TTP DL++AE +L
Sbjct: 179 VTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVL 218
>pdb|1VPA|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Tm1393) From Thermotoga Maritima
At 2.67 A Resolution
pdb|1VPA|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Tm1393) From Thermotoga Maritima
At 2.67 A Resolution
Length = 234
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET- 129
ILLA G+G+RM N+PKQ+L + G+ + Y TF + + +V+V + ++ E+
Sbjct: 17 ILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV 76
Query: 130 -KEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDAL 187
EK+ L G R SV S L+ ++ F+ V +HDSARP + K V +VL A
Sbjct: 77 FHEKV---LGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRAR 133
Query: 188 RVGAAVLGVP-AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGL 246
GAA L + + A ++ N + + RK ++ + TPQ ++LKK E G
Sbjct: 134 ETGAATLALKNSDALVRVENDR---IEYIPRKGVYRILTPQAFSYEILKKAHE----NGG 186
Query: 247 EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 283
E DD V+ L + + EG KVT +DL +A
Sbjct: 187 EWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELA 223
>pdb|2PX7|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Thermus Thermophilus Hb8
pdb|2PX7|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Thermus Thermophilus Hb8
Length = 236
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++ A G G R+G PK +L + G+ + ++ F + E++V P +
Sbjct: 29 LIPAAGNGLRLGRG-PKAFLQVGGRTLLEWTLAAFR---DAAEVLVALPPG-------AE 77
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190
+ F G RQ SV L+ LV +HD ARP V V +VL A R G
Sbjct: 78 PPKGLGAVFLEGGATRQASVARLLEAASLP--LVLVHDVARPFVSRGLVARVLEAAQRSG 135
Query: 191 AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTD 250
AAV +P T+ E++ R + R+ +QTPQ LL++ R+GLE +D
Sbjct: 136 AAVPVLPVPDTLMAPEGEAYG-RVVPREAFRLVQTPQGFFTALLREAHAYARRKGLEASD 194
Query: 251 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 291
D +V+ L +PV + EG T K+T P DL++AE + + S
Sbjct: 195 DAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS 235
>pdb|1VGZ|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGZ|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
Length = 241
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 14/223 (6%)
Query: 74 AGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDP--SYSDIFEETKE 131
A G G R GA+ PKQY+ + + + + F R V VVV P +++D +
Sbjct: 13 AAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFP 72
Query: 132 KINVDLKFSLPGKERQDSVYSG---LQEVDFNSEL--VCIHDSARPLVLSKDVQKVLMDA 186
++ V + G+ R ++V +G L E +E + +HD+AR + S+ + +++ A
Sbjct: 73 QVRV---WKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQA 129
Query: 187 LRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREG 245
+L VP T+K A S + T+DR LW+ QTPQ+ + LL + N G
Sbjct: 130 GNAAEGGILAVPVADTLKRAESGQ-ISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG 188
Query: 246 LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288
+TD+ S VE L + +G N+K+T P D I +L+
Sbjct: 189 --ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229
>pdb|1VGW|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|C Chain C, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|D Chain D, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|E Chain E, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|F Chain F, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
Length = 231
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 14/223 (6%)
Query: 74 AGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDP--SYSDIFEETKE 131
A G G R GA+ PKQY+ + + + + F R V VVV P +++D +
Sbjct: 13 AAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFP 72
Query: 132 KINVDLKFSLPGKERQDSVYSG---LQEVDFNSEL--VCIHDSARPLVLSKDVQKVLMDA 186
++ V + G+ R ++V +G L E +E + +HD+AR + S+ + +++ A
Sbjct: 73 QVRV---WKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQA 129
Query: 187 LRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREG 245
+L VP T+K A S + T+DR LW+ QTPQ+ + LL + N G
Sbjct: 130 GNAAEGGILAVPVADTLKRAESGQ-ISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG 188
Query: 246 LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288
+TD+ S VE L + +G N+K+T P D I +L+
Sbjct: 189 --ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 14/231 (6%)
Query: 72 LLAGGRGKRMG-ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
+LAGG+G RMG +MPKQ+LPL G+PI +++ F +I++ + + E+
Sbjct: 8 ILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNI 67
Query: 131 EKINVDLKFSL--PGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVL 183
+K D + + G++R +++ +G++ V+ + +++ HD+ RP + + +++ +
Sbjct: 68 KKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENI 127
Query: 184 MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 243
AL GA + A TI E+++ + R +++ QTPQ + ++ +
Sbjct: 128 DAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNHYQNLTP 187
Query: 244 EGLEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDL-----LIAERILN 288
E ++ TD I V + +G NIK+TTP DL +I ERI N
Sbjct: 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN 238
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 19/231 (8%)
Query: 72 LLAGGRGKRMG-ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET- 129
+LAGG G RMG +N+PKQ+L L +PI +++ F +++IVV + E+
Sbjct: 7 ILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLV 66
Query: 130 -------KEKINVDLKFSLPGKERQDSVYSGLQEVDFN-----SELVCIHDSARPLVLSK 177
KE+I + + G +R S+ + ++ +D ++V HDS RP + +
Sbjct: 67 DKYLPLYKERIII----TKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLR 122
Query: 178 DVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIK-PDLLKK 236
+Q + A A V A TI E+ + F+ +R L++ QTPQ + D +
Sbjct: 123 MIQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDL 182
Query: 237 GFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287
L + E +TD I V + +G Y+N+K+TT DL IA+ ++
Sbjct: 183 YGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233
>pdb|2XWN|A Chain A, Crystal Structure Of Ispd From Mycobacterium Tuberculosis
In Complex With Ctp And Mg
pdb|2XWN|B Chain B, Crystal Structure Of Ispd From Mycobacterium Tuberculosis
In Complex With Ctp And Mg
Length = 233
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 10/224 (4%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
I+ A G G+R+ +PK + L GQ + + +++ + V +D +E +
Sbjct: 11 IVPAAGSGERLAVGVPKAFYQLDGQTLIERAV---DGLLDSGVVDTVVVAVPADRTDEAR 67
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHDSARPLVLSKDVQKVLMDALR 188
+ + G R D+V L + +E V +HD+AR L V +V ++ALR
Sbjct: 68 QILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARV-VEALR 126
Query: 189 VG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL--VNRE 244
G AAV+ V P TIK ++ V+ T +R L +QTPQ DLL + ++ ++
Sbjct: 127 DGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLP 186
Query: 245 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288
E TDD S+VEH+ V + +G K+TT DLL+A+ I++
Sbjct: 187 AAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVH 230
>pdb|3OKR|A Chain A, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
pdb|3OKR|B Chain B, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
pdb|3OKR|C Chain C, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
pdb|3OKR|D Chain D, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
Length = 231
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 10/223 (4%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
I+ A G G+R+ +PK + L GQ + + +++ + V +D +E +
Sbjct: 11 IVPAAGSGERLAVGVPKAFYQLDGQTLIERAV---DGLLDSGVVDTVVVAVPADRTDEAR 67
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHDSARPLVLSKDVQKVLMDALR 188
+ + G R D+V L + +E V +HD+AR L V +V ++ALR
Sbjct: 68 QILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARV-VEALR 126
Query: 189 VG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL--VNRE 244
G AAV+ V P TIK ++ V+ T +R L +QTPQ DLL + ++ ++
Sbjct: 127 DGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLP 186
Query: 245 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287
E TDD S+VEH+ V + +G K+TT DLL+A+ I+
Sbjct: 187 AAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229
>pdb|3Q7U|A Chain A, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Ctp
pdb|3Q7U|B Chain B, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Ctp
pdb|3Q80|A Chain A, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Cdp-Me
pdb|3Q80|B Chain B, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Cdp-Me
Length = 231
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 10/223 (4%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
I+ A G G+R+ +PK + L GQ + + +++ + V +D +E +
Sbjct: 11 IVPAAGSGERLAVGVPKAFYQLDGQTLIERAV---DGLLDSGVVDTVVVAVPADRTDEAR 67
Query: 131 EKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHDSARPLVLSKDVQKVLMDALR 188
+ + G R D+V L + +E V +HD+AR L V +V ++ALR
Sbjct: 68 QILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARV-VEALR 126
Query: 189 VG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL--VNRE 244
G AAV+ V P TIK ++ V+ T +R L +QTPQ DLL + ++ ++
Sbjct: 127 DGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLP 186
Query: 245 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287
E TDD S+VEH+ V + +G K+TT DLL+A+ I+
Sbjct: 187 AAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229
>pdb|1W55|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni
pdb|1W57|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni Containing Zn
Length = 371
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 20/211 (9%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVV-CDPSYSDIFEET 129
I+LA G R + KQ+L L P+ LY+ S K+IVV + +Y F +
Sbjct: 7 IMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKN 66
Query: 130 KEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189
E F G R +S+ L+ +D SE V + D AR LV SK++ L++ L
Sbjct: 67 YE-------FIEGGDTRAESLKKALELID--SEFVMVSDVARVLV-SKNLFDRLIENLDK 116
Query: 190 GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVT 249
+ PA +K A++ F L R+ + +QTPQ+ K LLKK + + LE T
Sbjct: 117 ADCI--TPA---LKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFT 167
Query: 250 DDVSIVEHLKHPVYITEGSYTNIKVTTPDDL 280
DD + + + ++ EG K+T +DL
Sbjct: 168 DDSTAIAAMGGKIWFVEGEENARKLTFKEDL 198
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 72 LLAGGRGKRM---GANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE 128
+LA G G+R+ PK ++P+L +P+ Y + R +++I V+ + FE+
Sbjct: 5 ILAAGSGERLEPITHTRPKAFVPILSKPLIEYQI-EYLRKCGIRDITVIVSSKNKEYFEK 63
Query: 129 TKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 188
++I++ + K+ + + FN E + I+ L S + + + L+
Sbjct: 64 KLKEISI-----VTQKDDIKGTGAAILSAKFNDEALIIYGD---LFFSNEKEICNIITLK 115
Query: 189 VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE--MQTPQVIKPDLLKKGFELVNREGL 246
A++GV K +N + + V LD + ++ P++ +L+ G +N +
Sbjct: 116 EN-AIIGV------KVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIF 168
Query: 247 EVTDDVSIVE 256
D +SI E
Sbjct: 169 TYLDKISISE 178
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPI 97
++LA G+G RM +++PK PL G+P+
Sbjct: 9 VILAAGKGTRMYSDLPKVLHPLAGKPM 35
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPI 97
++LA G+G RM +++PK PL G+P+
Sbjct: 12 VILAAGKGTRMYSDLPKVLHPLAGKPM 38
>pdb|1H4E|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++LAGG+ +RMG + K L L G+P L+ + M ++ +VV + + +I++ +
Sbjct: 10 VVLAGGKARRMGG-VDKGLLELNGKP--LWQHVADALMTQLSHVVVNAN-RHQEIYQASG 65
Query: 131 EKINVDLKFSLPG 143
K+ D PG
Sbjct: 66 LKVIEDSLADYPG 78
>pdb|1FR9|A Chain A, Structure Of E. Coli Moba
pdb|1FRW|A Chain A, Structure Of E. Coli Moba With Bound Gtp And Manganese
Length = 194
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++LAGG+ +RMG + K L L G+P L+ + M ++ +VV + + +I++ +
Sbjct: 10 VVLAGGKARRMGG-VDKGLLELNGKP--LWQHVADALMTQLSHVVVNAN-RHQEIYQASG 65
Query: 131 EKINVDLKFSLPG 143
K+ D PG
Sbjct: 66 LKVIEDSLADYPG 78
>pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein Moba (Protein Fa) From Escherichia Coli At Near
Atomic Resolution
Length = 201
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++LAGG+ +RMG + K L L G+P L+ + M ++ +VV + + +I++ +
Sbjct: 10 VVLAGGKARRMGG-VDKGLLELNGKP--LWQHVADALMTQLSHVVVNAN-RHQEIYQASG 65
Query: 131 EKINVDLKFSLPG 143
K+ D PG
Sbjct: 66 LKVIEDSLADYPG 78
>pdb|1HJL|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++LAGG+ +RMG + K L L G+P L+ + M ++ +VV + + +I++ +
Sbjct: 10 VVLAGGKARRMGG-VDKGLLELNGKP--LWQHVADALMTQLSHVVVNAN-RHQEIYQASG 65
Query: 131 EKINVDLKFSLPG 143
K+ D PG
Sbjct: 66 LKVIEDSLADYPG 78
>pdb|1HJJ|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++LAGG+ +RMG + K L L G+P L+ + M ++ +VV + + +I++ +
Sbjct: 10 VVLAGGKARRMGG-VDKGLLELNGKP--LWQHVADALMTQLSHVVVNAN-RHQEIYQASG 65
Query: 131 EKINVDLKFSLPG 143
K+ D PG
Sbjct: 66 LKVIEDSLADYPG 78
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 216 DRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 262
DR+T+ +++TP V K +LVNREGL V+D + P+
Sbjct: 219 DRRTVLDVRTPNVFD---NKYYIDLVNREGLFVSDQDLFTNAITRPI 262
>pdb|2QH5|A Chain A, Crystal Structure Of Mannose-6-Phosphate Isomerase From
Helicobacter Pylori
pdb|2QH5|B Chain B, Crystal Structure Of Mannose-6-Phosphate Isomerase From
Helicobacter Pylori
Length = 308
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 71 ILLAGGRGKRMG----ANMPKQYLPLLGQPIALYSFYTFSRMVE-VKEIVVVCDPS-YSD 124
ILL+GG GKR+ + PKQ+L L +L+ +F R V E ++VC+ Y
Sbjct: 8 ILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFEL-SFKRNASLVDETLIVCNEKHYFL 65
Query: 125 IFEETKEKI 133
EE K +I
Sbjct: 66 ALEEIKNEI 74
>pdb|1H4D|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 71 ILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK 130
++LAGG+ +RMG + K L L G+P L+ + M ++ +VV + + +I++ +
Sbjct: 10 VVLAGGKARRMGL-VDKGLLELNGKP--LWQHVADALMTQLSHVVVNAN-RHQEIYQASG 65
Query: 131 EKINVDLKFSLPG 143
K+ D PG
Sbjct: 66 LKVIEDSLADYPG 78
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 102 FYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS 161
+ FSR E+ I V D+ E +K+ L + G E + E +
Sbjct: 198 YEAFSRCKEIGAIAQV-HAENGDLIAEGAKKM---LALGITGPEGHELCRPEAVEAEATL 253
Query: 162 ELVCIHDSAR-PL----VLSKDVQKVLMDALRVGAAVLGVPAKATI 202
+ I + PL V+SK KV+ DA R G V G P A++
Sbjct: 254 RAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASL 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,273,832
Number of Sequences: 62578
Number of extensions: 272390
Number of successful extensions: 1036
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 40
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)