Query 022657
Match_columns 294
No_of_seqs 159 out of 2010
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01128 IspD: 2-C-methyl-D-er 100.0 6.3E-42 1.4E-46 301.0 24.1 220 68-289 1-221 (221)
2 PLN02728 2-C-methyl-D-erythrit 100.0 7.3E-41 1.6E-45 300.4 26.4 242 50-291 7-248 (252)
3 COG1211 IspD 4-diphosphocytidy 100.0 1.5E-39 3.3E-44 285.2 24.5 225 65-289 2-228 (230)
4 PRK13385 2-C-methyl-D-erythrit 100.0 7.9E-36 1.7E-40 264.6 25.4 225 66-292 1-228 (230)
5 PRK00155 ispD 2-C-methyl-D-ery 100.0 3.1E-34 6.7E-39 253.6 26.3 226 66-292 2-227 (227)
6 TIGR00453 ispD 2-C-methyl-D-er 100.0 1.8E-33 4E-38 246.8 25.0 217 69-287 1-217 (217)
7 cd02516 CDP-ME_synthetase CDP- 100.0 8.2E-33 1.8E-37 242.4 23.6 215 68-283 1-218 (218)
8 PRK09382 ispDF bifunctional 2- 100.0 8.5E-33 1.8E-37 261.0 24.6 212 66-290 4-215 (378)
9 COG2068 Uncharacterized MobA-r 99.9 5.5E-25 1.2E-29 187.6 19.7 193 64-288 2-198 (199)
10 COG1207 GlmU N-acetylglucosami 99.9 3.7E-23 8E-28 192.4 22.9 225 66-293 1-248 (460)
11 cd02517 CMP-KDO-Synthetase CMP 99.9 1.6E-22 3.5E-27 179.7 23.5 213 67-286 1-239 (239)
12 PRK13368 3-deoxy-manno-octulos 99.9 1.2E-22 2.7E-27 180.3 22.1 213 66-287 1-238 (238)
13 PRK14353 glmU bifunctional N-a 99.9 1.4E-22 3E-27 196.0 23.6 224 64-290 2-245 (446)
14 PRK14356 glmU bifunctional N-a 99.9 1.4E-22 3E-27 196.6 23.2 220 67-290 5-246 (456)
15 PRK05450 3-deoxy-manno-octulos 99.9 5.5E-22 1.2E-26 176.9 24.1 214 66-287 1-244 (245)
16 cd02513 CMP-NeuAc_Synthase CMP 99.9 8.6E-23 1.9E-27 179.1 18.4 204 67-287 1-223 (223)
17 PRK00317 mobA molybdopterin-gu 99.9 2.4E-22 5.3E-27 173.3 20.7 186 66-286 2-192 (193)
18 cd04182 GT_2_like_f GT_2_like_ 99.9 1.8E-22 3.9E-27 171.6 19.3 182 68-281 1-186 (186)
19 cd02540 GT2_GlmU_N_bac N-termi 99.9 3.1E-22 6.8E-27 176.3 21.4 209 70-280 1-229 (229)
20 PRK02726 molybdopterin-guanine 99.9 2.3E-22 5E-27 174.9 19.7 190 62-286 2-197 (200)
21 TIGR00466 kdsB 3-deoxy-D-manno 99.9 3E-22 6.4E-27 178.8 19.9 202 70-281 2-238 (238)
22 COG1209 RfbA dTDP-glucose pyro 99.9 4.3E-22 9.4E-27 176.2 20.5 217 68-291 1-239 (286)
23 PRK14354 glmU bifunctional N-a 99.9 1.2E-21 2.5E-26 190.1 23.9 220 66-290 1-242 (458)
24 TIGR03310 matur_ygfJ molybdenu 99.9 6.3E-22 1.4E-26 169.2 18.7 181 70-282 2-187 (188)
25 TIGR03202 pucB xanthine dehydr 99.9 6E-22 1.3E-26 170.4 18.7 184 68-280 1-190 (190)
26 PLN02917 CMP-KDO synthetase 99.9 3.1E-21 6.7E-26 177.1 24.4 218 64-290 44-290 (293)
27 PRK14359 glmU bifunctional N-a 99.9 8.4E-22 1.8E-26 189.5 21.0 216 66-291 1-237 (430)
28 TIGR01173 glmU UDP-N-acetylglu 99.9 3.4E-21 7.3E-26 186.3 23.9 220 68-290 1-238 (451)
29 TIGR03584 PseF pseudaminic aci 99.9 3.1E-21 6.8E-26 170.5 21.4 202 70-288 2-221 (222)
30 TIGR02665 molyb_mobA molybdopt 99.9 1.4E-21 3E-26 167.2 18.3 181 68-281 1-186 (186)
31 PRK14352 glmU bifunctional N-a 99.9 3.1E-21 6.6E-26 188.6 22.5 215 66-282 3-238 (482)
32 cd02503 MobA MobA catalyzes th 99.9 3.7E-21 7.9E-26 163.9 19.1 178 68-280 1-181 (181)
33 PRK14360 glmU bifunctional N-a 99.9 3.8E-21 8.2E-26 186.1 21.2 218 68-290 2-239 (450)
34 PRK14355 glmU bifunctional N-a 99.9 1.9E-20 4.2E-25 181.9 24.0 221 67-290 3-245 (459)
35 cd02538 G1P_TT_short G1P_TT_sh 99.9 9.1E-20 2E-24 162.3 23.8 215 69-288 2-238 (240)
36 COG1213 Predicted sugar nucleo 99.9 9.2E-21 2E-25 164.9 15.4 218 66-292 2-233 (239)
37 PRK15480 glucose-1-phosphate t 99.9 1.1E-19 2.3E-24 166.9 23.3 218 67-289 3-242 (292)
38 PRK00560 molybdopterin-guanine 99.9 5.4E-20 1.2E-24 159.5 19.7 183 66-290 7-194 (196)
39 cd02518 GT2_SpsF SpsF is a gly 99.8 1.2E-19 2.6E-24 160.9 20.3 188 70-289 2-204 (233)
40 PRK14489 putative bifunctional 99.8 8.7E-20 1.9E-24 172.5 20.5 190 66-288 4-198 (366)
41 PRK14358 glmU bifunctional N-a 99.8 1.3E-19 2.8E-24 177.2 22.3 223 64-291 4-248 (481)
42 TIGR01207 rmlA glucose-1-phosp 99.8 2.5E-19 5.4E-24 164.0 22.6 215 69-289 1-238 (286)
43 TIGR01105 galF UTP-glucose-1-p 99.8 3.1E-19 6.6E-24 164.2 23.2 213 67-286 3-275 (297)
44 cd06915 NTP_transferase_WcbM_l 99.8 1.7E-19 3.6E-24 157.7 19.5 204 70-284 1-223 (223)
45 PF00483 NTP_transferase: Nucl 99.8 2E-19 4.3E-24 160.2 19.5 218 69-289 1-247 (248)
46 PRK14490 putative bifunctional 99.8 3E-19 6.5E-24 169.1 20.9 192 66-291 173-367 (369)
47 PRK09451 glmU bifunctional N-a 99.8 2.2E-19 4.8E-24 174.3 19.8 216 64-284 2-242 (456)
48 TIGR01208 rmlA_long glucose-1- 99.8 8.3E-19 1.8E-23 164.9 22.9 217 69-291 1-238 (353)
49 COG0746 MobA Molybdopterin-gua 99.8 4.4E-19 9.6E-24 153.1 19.2 185 66-285 3-190 (192)
50 cd04189 G1P_TT_long G1P_TT_lon 99.8 1.3E-18 2.9E-23 154.0 22.5 214 68-289 1-235 (236)
51 COG1083 NeuA CMP-N-acetylneura 99.8 5.7E-19 1.2E-23 151.1 17.8 210 66-292 2-227 (228)
52 cd02541 UGPase_prokaryotic Pro 99.8 1.6E-18 3.5E-23 156.7 21.6 214 69-288 2-265 (267)
53 TIGR00454 conserved hypothetic 99.8 3.1E-19 6.8E-24 153.2 15.9 116 69-189 2-117 (183)
54 COG2266 GTP:adenosylcobinamide 99.8 8.1E-19 1.7E-23 146.2 16.9 111 69-187 2-112 (177)
55 COG1212 KdsB CMP-2-keto-3-deox 99.8 3.1E-18 6.7E-23 147.7 20.9 217 66-290 2-245 (247)
56 cd06422 NTP_transferase_like_1 99.8 1.4E-18 3E-23 152.7 19.3 204 69-283 1-221 (221)
57 PRK05293 glgC glucose-1-phosph 99.8 1.7E-18 3.7E-23 164.2 21.1 219 66-288 2-258 (380)
58 COG1208 GCD1 Nucleoside-diphos 99.8 2.5E-18 5.5E-23 162.0 21.3 215 68-291 2-238 (358)
59 TIGR01099 galU UTP-glucose-1-p 99.8 3.1E-18 6.7E-23 154.1 21.0 210 69-283 2-260 (260)
60 cd02524 G1P_cytidylyltransfera 99.8 4.7E-18 1E-22 152.7 21.9 213 70-291 1-249 (253)
61 PRK10122 GalU regulator GalF; 99.8 1.1E-17 2.3E-22 154.1 23.5 214 67-287 3-276 (297)
62 PF12804 NTP_transf_3: MobA-li 99.8 9.3E-19 2E-23 146.0 14.8 117 70-193 1-118 (160)
63 TIGR02623 G1P_cyt_trans glucos 99.8 9.6E-18 2.1E-22 151.0 22.0 212 69-292 1-249 (254)
64 cd06425 M1P_guanylylT_B_like_N 99.8 9.9E-18 2.1E-22 148.6 20.7 210 69-287 2-232 (233)
65 cd06426 NTP_transferase_like_2 99.8 5E-18 1.1E-22 148.7 18.0 203 70-284 1-220 (220)
66 PRK14357 glmU bifunctional N-a 99.8 1.4E-17 3E-22 161.3 21.7 209 68-289 1-231 (448)
67 PRK00844 glgC glucose-1-phosph 99.8 1.5E-17 3.3E-22 159.4 21.0 219 66-289 4-277 (407)
68 cd02523 PC_cytidylyltransferas 99.8 1.9E-17 4.1E-22 146.2 19.7 205 70-284 1-229 (229)
69 PRK13389 UTP--glucose-1-phosph 99.8 7.2E-17 1.6E-21 148.9 23.3 214 68-287 9-279 (302)
70 PRK14500 putative bifunctional 99.8 7.8E-18 1.7E-22 157.5 16.9 109 67-187 160-271 (346)
71 cd04183 GT2_BcE_like GT2_BcbE_ 99.8 3.5E-17 7.7E-22 144.5 19.2 208 70-281 1-231 (231)
72 cd06428 M1P_guanylylT_A_like_N 99.8 5.5E-17 1.2E-21 146.0 20.4 212 70-286 1-256 (257)
73 PRK02862 glgC glucose-1-phosph 99.8 7.3E-17 1.6E-21 155.7 19.8 216 67-288 3-273 (429)
74 TIGR02092 glgD glucose-1-phosp 99.8 7.5E-17 1.6E-21 152.5 19.3 217 67-287 2-252 (369)
75 PRK00725 glgC glucose-1-phosph 99.7 2.3E-16 5.1E-21 152.0 22.1 218 66-288 14-287 (425)
76 TIGR02091 glgC glucose-1-phosp 99.7 1E-16 2.2E-21 151.1 19.0 215 70-289 1-259 (361)
77 PLN02241 glucose-1-phosphate a 99.7 2.3E-16 4.9E-21 152.6 20.3 220 66-289 2-282 (436)
78 cd04181 NTP_transferase NTP_tr 99.7 1.4E-15 3E-20 132.4 18.7 198 70-275 1-217 (217)
79 cd02508 ADP_Glucose_PP ADP-glu 99.7 6.7E-16 1.5E-20 133.9 16.6 177 70-274 1-200 (200)
80 cd02509 GDP-M1P_Guanylyltransf 99.7 1.8E-15 3.9E-20 137.8 18.5 118 69-186 2-128 (274)
81 KOG1322 GDP-mannose pyrophosph 99.6 1.7E-14 3.7E-19 130.6 18.9 213 66-287 8-243 (371)
82 COG1210 GalU UDP-glucose pyrop 99.6 2.5E-13 5.3E-18 120.9 19.5 216 66-288 3-270 (291)
83 TIGR01479 GMP_PMI mannose-1-ph 99.6 1.9E-13 4.1E-18 133.3 20.4 118 68-186 1-129 (468)
84 cd04198 eIF-2B_gamma_N The N-t 99.6 5.4E-14 1.2E-18 123.3 12.8 120 68-193 1-131 (214)
85 COG4750 LicC CTP:phosphocholin 99.5 5.1E-14 1.1E-18 118.7 10.0 202 69-286 2-224 (231)
86 COG1861 SpsF Spore coat polysa 99.5 8.9E-13 1.9E-17 113.7 17.7 119 66-191 2-122 (241)
87 PRK00576 molybdopterin-guanine 99.5 9.3E-13 2E-17 112.2 17.7 166 81-284 1-174 (178)
88 PF02348 CTP_transf_3: Cytidyl 99.5 3.6E-13 7.7E-18 117.8 14.1 116 69-190 1-118 (217)
89 cd04197 eIF-2B_epsilon_N The N 99.5 2.3E-12 4.9E-17 113.2 15.7 113 69-188 2-129 (217)
90 PRK15460 cpsB mannose-1-phosph 99.4 1.4E-10 3E-15 113.0 21.6 122 64-186 2-135 (478)
91 COG0836 {ManC} Mannose-1-phosp 99.3 1.2E-10 2.6E-15 106.0 18.9 120 68-187 2-132 (333)
92 cd02507 eIF-2B_gamma_N_like Th 99.3 1.8E-11 4E-16 107.5 11.8 111 69-185 2-125 (216)
93 TIGR03552 F420_cofC 2-phospho- 99.2 2.4E-10 5.1E-15 98.6 13.1 90 95-190 30-120 (195)
94 COG0448 GlgC ADP-glucose pyrop 99.1 1.7E-09 3.7E-14 101.2 16.5 217 66-287 4-260 (393)
95 KOG1460 GDP-mannose pyrophosph 99.1 9.2E-10 2E-14 98.9 12.3 124 66-192 1-136 (407)
96 KOG1462 Translation initiation 98.9 7.1E-10 1.5E-14 102.7 5.0 121 66-191 8-140 (433)
97 cd04180 UGPase_euk_like Eukary 98.6 4.4E-08 9.6E-13 88.9 5.8 66 68-134 1-76 (266)
98 cd04193 UDPGlcNAc_PPase UDPGlc 98.4 4.1E-07 8.9E-12 84.8 6.8 69 64-132 12-93 (323)
99 PTZ00339 UDP-N-acetylglucosami 98.4 1E-06 2.2E-11 86.0 7.7 69 64-132 103-186 (482)
100 PF01983 CofC: Guanylyl transf 98.0 1.1E-05 2.5E-10 70.8 6.5 178 69-284 2-183 (217)
101 COG1920 Predicted nucleotidylt 97.9 0.00053 1.2E-08 58.5 14.3 85 95-190 31-115 (210)
102 cd00897 UGPase_euk Eukaryotic 97.7 8.9E-05 1.9E-09 68.3 7.3 68 67-134 3-75 (300)
103 cd06424 UGGPase UGGPase cataly 97.6 0.00017 3.7E-09 66.8 7.5 64 69-132 2-76 (315)
104 KOG1461 Translation initiation 97.4 0.0018 3.9E-08 64.1 11.2 116 65-187 22-150 (673)
105 PLN02474 UTP--glucose-1-phosph 97.3 0.00096 2.1E-08 65.0 8.3 69 66-134 78-151 (469)
106 PLN02435 probable UDP-N-acetyl 97.3 0.00062 1.4E-08 66.6 7.1 69 64-132 113-198 (493)
107 PF01704 UDPGP: UTP--glucose-1 97.2 0.00078 1.7E-08 65.0 6.5 70 64-133 53-127 (420)
108 PLN02830 UDP-sugar pyrophospho 97.0 0.0026 5.7E-08 64.0 8.5 68 66-133 127-208 (615)
109 COG4284 UDP-glucose pyrophosph 97.0 0.001 2.2E-08 64.2 4.9 44 65-108 103-147 (472)
110 cd00761 Glyco_tranf_GTA_type G 95.3 0.44 9.5E-06 37.0 11.6 90 95-188 9-104 (156)
111 PF00535 Glycos_transf_2: Glyc 95.1 0.31 6.7E-06 38.9 10.2 95 95-193 10-110 (169)
112 cd02511 Beta4Glucosyltransfera 95.0 0.52 1.1E-05 41.2 12.3 91 93-190 10-100 (229)
113 KOG2388 UDP-N-acetylglucosamin 94.2 0.05 1.1E-06 52.7 3.8 44 64-107 94-140 (477)
114 cd04195 GT2_AmsE_like GT2_AmsE 94.1 1.5 3.3E-05 36.7 12.8 91 97-190 14-109 (201)
115 cd06438 EpsO_like EpsO protein 93.7 2.3 5.1E-05 35.4 13.0 95 93-189 7-109 (183)
116 PF09837 DUF2064: Uncharacteri 93.5 0.64 1.4E-05 37.1 8.6 92 102-198 2-95 (122)
117 cd06439 CESA_like_1 CESA_like_ 93.3 1.2 2.6E-05 38.9 11.1 104 66-190 29-138 (251)
118 cd06421 CESA_CelA_like CESA_Ce 93.2 2.3 5.1E-05 36.4 12.5 90 96-189 15-112 (234)
119 cd06435 CESA_NdvC_like NdvC_li 93.0 1.9 4.2E-05 37.2 11.8 100 90-190 4-113 (236)
120 cd04179 DPM_DPG-synthase_like 92.7 1.2 2.7E-05 36.6 9.8 94 96-193 10-111 (185)
121 PRK10714 undecaprenyl phosphat 92.7 3.9 8.4E-05 38.1 13.9 89 97-188 24-117 (325)
122 cd04192 GT_2_like_e Subfamily 92.4 2.3 4.9E-05 36.2 11.3 94 94-191 8-112 (229)
123 COG3222 Uncharacterized protei 92.2 5.5 0.00012 34.1 12.6 162 95-289 37-206 (211)
124 cd06434 GT2_HAS Hyaluronan syn 92.2 1.9 4.1E-05 37.1 10.6 88 96-188 14-104 (235)
125 PRK10073 putative glycosyl tra 92.2 4.7 0.0001 37.6 13.8 96 94-193 17-117 (328)
126 cd04186 GT_2_like_c Subfamily 91.9 3.1 6.6E-05 33.2 10.9 94 93-190 7-103 (166)
127 PRK13915 putative glucosyl-3-p 91.7 2.5 5.4E-05 39.1 11.3 105 65-189 30-144 (306)
128 cd02510 pp-GalNAc-T pp-GalNAc- 91.3 5 0.00011 36.4 12.8 94 96-192 12-114 (299)
129 cd04184 GT2_RfbC_Mx_like Myxoc 90.9 5.2 0.00011 33.4 11.7 93 93-188 11-110 (202)
130 cd02525 Succinoglycan_BP_ExoA 90.3 4.3 9.3E-05 35.0 11.0 93 95-191 12-111 (249)
131 TIGR03111 glyc2_xrt_Gpos1 puta 89.9 9.2 0.0002 37.1 13.9 92 95-190 61-160 (439)
132 cd06427 CESA_like_2 CESA_like_ 89.7 7.6 0.00017 33.8 12.1 90 96-189 14-112 (241)
133 cd06423 CESA_like CESA_like is 89.7 6.4 0.00014 31.0 10.8 92 95-190 9-107 (180)
134 PLN02726 dolichyl-phosphate be 89.4 11 0.00024 33.0 12.9 78 113-193 42-125 (243)
135 COG1216 Predicted glycosyltran 89.3 4.1 9E-05 37.3 10.4 104 89-193 9-116 (305)
136 PRK11204 N-glycosyltransferase 89.1 5.4 0.00012 38.1 11.5 105 65-190 53-163 (420)
137 cd04188 DPG_synthase DPG_synth 89.1 6.6 0.00014 33.3 11.0 95 94-191 8-112 (211)
138 cd06433 GT_2_WfgS_like WfgS an 88.9 6.5 0.00014 32.3 10.6 92 93-189 8-103 (202)
139 COG1215 Glycosyltransferases, 88.9 5.9 0.00013 37.7 11.6 106 66-191 54-167 (439)
140 cd04187 DPM1_like_bac Bacteria 88.7 9.2 0.0002 31.4 11.4 72 112-187 30-106 (181)
141 cd06442 DPM1_like DPM1_like re 88.1 8.3 0.00018 32.7 11.1 93 93-189 7-106 (224)
142 cd06913 beta3GnTL1_like Beta 1 88.0 13 0.00029 31.6 12.2 98 93-193 7-116 (219)
143 cd04185 GT_2_like_b Subfamily 87.8 10 0.00022 31.7 11.3 94 93-188 7-106 (202)
144 cd02520 Glucosylceramide_synth 87.8 15 0.00033 30.8 12.4 89 96-188 14-113 (196)
145 PF13704 Glyco_tranf_2_4: Glyc 87.8 2.9 6.3E-05 31.1 7.0 78 95-175 4-86 (97)
146 cd02522 GT_2_like_a GT_2_like_ 87.6 11 0.00023 31.9 11.5 90 95-190 11-101 (221)
147 KOG2978 Dolichol-phosphate man 87.2 6.7 0.00015 33.9 9.4 94 94-190 17-117 (238)
148 TIGR03469 HonB hopene-associat 87.0 7.7 0.00017 36.9 11.0 109 65-191 39-163 (384)
149 TIGR03472 HpnI hopanoid biosyn 86.5 14 0.00031 34.8 12.5 105 66-190 41-155 (373)
150 PF10111 Glyco_tranf_2_2: Glyc 86.2 18 0.00038 32.7 12.6 50 145-197 75-127 (281)
151 cd06436 GlcNAc-1-P_transferase 86.2 13 0.00029 31.1 11.1 93 93-187 7-115 (191)
152 PRK11498 bcsA cellulose syntha 85.8 17 0.00037 38.5 13.6 88 97-190 275-368 (852)
153 TIGR01556 rhamnosyltran L-rham 85.8 13 0.00027 33.3 11.3 90 96-189 8-101 (281)
154 cd04196 GT_2_like_d Subfamily 85.7 12 0.00025 31.4 10.5 94 93-189 8-107 (214)
155 PRK14583 hmsR N-glycosyltransf 85.0 18 0.0004 35.0 12.7 104 66-190 75-184 (444)
156 PTZ00260 dolichyl-phosphate be 84.5 10 0.00022 35.5 10.3 74 112-188 108-189 (333)
157 cd02526 GT2_RfbF_like RfbF is 84.2 18 0.00039 31.0 11.2 89 91-183 5-97 (237)
158 PF13641 Glyco_tranf_2_3: Glyc 82.4 7.5 0.00016 33.2 8.0 94 95-191 13-116 (228)
159 TIGR03030 CelA cellulose synth 81.3 28 0.00061 36.1 13.0 90 97-191 146-258 (713)
160 cd06420 GT2_Chondriotin_Pol_N 80.1 30 0.00066 28.1 11.0 89 94-186 8-104 (182)
161 PRK10018 putative glycosyl tra 79.3 41 0.00089 30.6 12.1 93 93-188 15-112 (279)
162 cd06437 CESA_CaSu_A2 Cellulose 78.8 28 0.00061 29.9 10.5 91 94-187 12-113 (232)
163 PRK05454 glucosyltransferase M 73.8 76 0.0016 33.0 13.4 101 89-190 129-249 (691)
164 KOG2638 UDP-glucose pyrophosph 72.0 20 0.00042 34.7 7.9 69 66-134 102-175 (498)
165 PRK10063 putative glycosyl tra 71.4 73 0.0016 28.2 11.7 84 93-180 11-101 (248)
166 cd04191 Glucan_BSP_ModH Glucan 67.7 92 0.002 27.8 12.5 101 89-190 4-124 (254)
167 PF09258 Glyco_transf_64: Glyc 61.2 12 0.00026 33.6 4.1 99 95-197 12-111 (247)
168 cd04190 Chitin_synth_C C-termi 50.9 1.4E+02 0.0031 25.9 9.4 30 160-190 73-102 (244)
169 PF04028 DUF374: Domain of unk 49.1 99 0.0021 22.3 7.0 55 115-169 14-68 (74)
170 PRK14716 bacteriophage N4 adso 45.2 2E+02 0.0043 28.7 10.1 92 93-186 76-183 (504)
171 COG3315 O-Methyltransferase in 41.4 2.9E+02 0.0062 25.5 10.2 99 68-189 94-198 (297)
172 COG1066 Sms Predicted ATP-depe 40.6 3.6E+02 0.0079 26.4 12.0 84 85-176 91-183 (456)
173 PRK05967 cystathionine beta-ly 36.6 3.8E+02 0.0081 25.8 10.3 97 89-193 83-182 (395)
174 COG0075 Serine-pyruvate aminot 35.4 4.1E+02 0.009 25.5 10.3 94 95-191 66-162 (383)
175 COG0463 WcaA Glycosyltransfera 35.0 2.2E+02 0.0047 22.1 7.8 85 96-185 16-106 (291)
176 TIGR00334 5S_RNA_mat_M5 ribonu 32.8 1.9E+02 0.004 24.6 6.7 69 111-186 2-70 (174)
177 PF13506 Glyco_transf_21: Glyc 32.7 1.4E+02 0.003 25.0 6.0 40 147-188 19-58 (175)
178 PF02084 Bindin: Bindin; Inte 31.6 33 0.00071 30.3 2.0 23 270-292 120-142 (238)
179 PRK11914 diacylglycerol kinase 31.5 4E+02 0.0086 24.2 9.7 76 76-155 1-85 (306)
180 KOG2977 Glycosyltransferase [G 30.6 2.3E+02 0.005 26.2 7.2 103 50-172 55-169 (323)
181 PRK11234 nfrB bacteriophage N4 30.5 6.5E+02 0.014 26.4 11.5 90 93-186 73-179 (727)
182 COG0626 MetC Cystathionine bet 30.0 4.6E+02 0.01 25.3 9.6 97 93-196 86-184 (396)
183 COG2121 Uncharacterized protei 30.0 2.1E+02 0.0045 25.1 6.6 60 110-169 66-126 (214)
184 PF07302 AroM: AroM protein; 28.5 4.2E+02 0.009 23.4 8.7 103 70-185 91-199 (221)
185 TIGR00236 wecB UDP-N-acetylglu 28.5 4.2E+02 0.0092 24.4 9.2 48 87-135 2-52 (365)
186 COG0079 HisC Histidinol-phosph 28.3 5.1E+02 0.011 24.4 9.6 95 87-188 76-176 (356)
187 PF01053 Cys_Met_Meta_PP: Cys/ 28.0 5.3E+02 0.012 24.6 9.8 97 93-197 78-177 (386)
188 KOG2547 Ceramide glucosyltrans 27.5 1.6E+02 0.0035 28.3 5.8 91 96-189 98-198 (431)
189 COG2179 Predicted hydrolase of 26.9 2.8E+02 0.0061 23.5 6.7 81 85-172 35-120 (175)
190 PF02485 Branch: Core-2/I-Bran 26.8 4.2E+02 0.009 22.9 8.3 91 94-186 11-115 (244)
191 cd02514 GT13_GLCNAC-TI GT13_GL 26.6 5.4E+02 0.012 24.2 12.1 100 89-190 5-129 (334)
192 COG0381 WecB UDP-N-acetylgluco 26.0 4E+02 0.0086 25.7 8.3 96 87-187 5-114 (383)
193 TIGR00288 conserved hypothetic 25.6 2.7E+02 0.0059 23.3 6.4 13 109-121 104-116 (160)
194 COG2984 ABC-type uncharacteriz 25.5 4.9E+02 0.011 24.4 8.6 117 68-189 110-238 (322)
195 PF00670 AdoHcyase_NAD: S-aden 24.7 4.2E+02 0.0091 22.2 8.0 85 95-182 7-100 (162)
196 TIGR02990 ectoine_eutA ectoine 23.6 5.2E+02 0.011 22.9 9.3 70 97-167 107-188 (239)
197 KOG0799 Branching enzyme [Carb 22.6 5.6E+02 0.012 25.0 8.9 90 95-186 115-218 (439)
198 KOG2264 Exostosin EXT1L [Signa 22.3 65 0.0014 32.5 2.3 102 74-179 631-743 (907)
199 COG0378 HypB Ni2+-binding GTPa 22.1 3.7E+02 0.0081 23.4 6.7 70 95-167 27-103 (202)
200 PF10087 DUF2325: Uncharacteri 22.0 3.3E+02 0.0072 20.1 8.4 71 114-191 2-76 (97)
201 COG1581 Ssh10b Archaeal DNA-bi 21.1 3.7E+02 0.008 20.2 5.8 37 86-122 3-40 (91)
202 PRK06823 ornithine cyclodeamin 20.1 6.2E+02 0.013 23.4 8.4 83 86-179 128-212 (315)
No 1
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=100.00 E-value=6.3e-42 Score=300.95 Aligned_cols=220 Identities=43% Similarity=0.677 Sum_probs=192.0
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHH
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQ 147 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 147 (294)
+.+||||||.|+|||.++||++++++|+|+|.|++++|.+++.+++|+||+.+++.+.+++.+.+ ..+.++.+|.++.
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~~v~iv~GG~tR~ 78 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--KKVKIVEGGATRQ 78 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--TTEEEEE--SSHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--CCEEEecCChhHH
Confidence 57999999999999988999999999999999999999999999999999999887777777666 5678889999999
Q ss_pred HHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh-cCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCC
Q 022657 148 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTP 226 (294)
Q Consensus 148 ~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~-~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP 226 (294)
+|+++||..+..+.++|++||+.+||++++.+.++++...+ +++++++.|+.++++.++++|.+.++++|++++.+|||
T Consensus 79 ~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~~QTP 158 (221)
T PF01128_consen 79 ESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWAVQTP 158 (221)
T ss_dssp HHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeeeecCC
Confidence 99999999998666899999999999999999999999988 89999999999999999888999999999999999999
Q ss_pred ceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhh
Q 022657 227 QVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 227 ~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
|+|+++.+.++++.....+..+||+.++++..|.++.+++++..+++|+|||||+.||.++++
T Consensus 159 Q~F~~~~l~~a~~~a~~~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~ 221 (221)
T PF01128_consen 159 QAFRFELLLEAYEKADEEGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ 221 (221)
T ss_dssp EEEEHHHHHHHHHTHHHHTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred CeecHHHHHHHHHHHHhcCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence 999999999999987666788999999999999999999999999999999999999999864
No 2
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=100.00 E-value=7.3e-41 Score=300.42 Aligned_cols=242 Identities=81% Similarity=1.179 Sum_probs=213.7
Q ss_pred eecccccCCCcccccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHH
Q 022657 50 IRCSAKVDNGSVVVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET 129 (294)
Q Consensus 50 ~~~~~~~~~~~~m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~ 129 (294)
.-.|+..|+.+..+..+++.+||||||.|+|||.+.||+|++++|+|+|+|+++++...+++++|+||++++..+.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~ 86 (252)
T PLN02728 7 ALASAADDETSAVVKEKSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEA 86 (252)
T ss_pred ccccccccccccccccCceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHH
Confidence 34456667777766777899999999999999987899999999999999999999886679999999998755556555
Q ss_pred HhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCC
Q 022657 130 KEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES 209 (294)
Q Consensus 130 ~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G 209 (294)
+..++..+.++.++.++.+|++.|+..++.+.++|+++|+++||++++.+.++++....++++++++|..++++.++++|
T Consensus 87 ~~~~~~~i~~v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~ 166 (252)
T PLN02728 87 VENIDVPLKFALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDS 166 (252)
T ss_pred HHhcCCceEEcCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCC
Confidence 55555556667788889999999999886556789999999999999999999999888899999999999999988788
Q ss_pred cEEEeccccceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhh
Q 022657 210 FVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 210 ~v~~~~~~~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
.+..+++|+.+|.+||||+|+++.+.++++.....++.+||+..+++..|.++.+++++..+++|+||+||+.|+.+++.
T Consensus 167 ~v~~t~~R~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 167 FVVKTLDRKRLWEMQTPQVIKPELLRRGFELVEREGLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred ceeeccChHHeEEEeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 89999999999999999999999999999887666788999999999999999999999999999999999999999976
Q ss_pred hh
Q 022657 290 SS 291 (294)
Q Consensus 290 ~~ 291 (294)
+.
T Consensus 247 ~~ 248 (252)
T PLN02728 247 RS 248 (252)
T ss_pred cc
Confidence 54
No 3
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=100.00 E-value=1.5e-39 Score=285.18 Aligned_cols=225 Identities=40% Similarity=0.608 Sum_probs=206.2
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHH-hhcCCceEEeCCC
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK-EKINVDLKFSLPG 143 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~-~~~~~~i~~v~~~ 143 (294)
.|++.+||||||.|+||+.+.||++++++|+||++|+++.|...+.|++|+|++.+++.+.+.+.. ...+.++.++.+|
T Consensus 2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~v~GG 81 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKGG 81 (230)
T ss_pred CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEEecCC
Confidence 367899999999999999999999999999999999999999999999999999986656666665 2334578889999
Q ss_pred CcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceee
Q 022657 144 KERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE 222 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~ 222 (294)
.++++|++.|+..++. +.++|+++|+.+||++.+.|.++++.....+++++++|+.+|+++.+++|.+.++++|+++|.
T Consensus 82 ~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~~l~~ 161 (230)
T COG1211 82 ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRSGLWA 161 (230)
T ss_pred ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChhhhhh
Confidence 9999999999999974 468999999999999999999999777678899999999999999988899999999999999
Q ss_pred ccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhh
Q 022657 223 MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 223 ~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
+||||.|+.+.|.+++......|..+||+.++++..|.++.+++++..+++|+||+||+.|+.+++.
T Consensus 162 ~QTPQ~F~~~~L~~a~~~a~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 162 AQTPQAFRLELLKQALARAFAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred hhCCccccHHHHHHHHHHHHhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 9999999999999999987777889999999999999999999999999999999999999999876
No 4
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=7.9e-36 Score=264.59 Aligned_cols=225 Identities=33% Similarity=0.562 Sum_probs=193.5
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCC---ceEEeCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLP 142 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~---~i~~v~~ 142 (294)
|++.+||||||.|+|||++.||+|++++|+|||+|+++++...+.+++|+||++++..+.+++.+.+++. .+.++.+
T Consensus 1 ~~~~~iIlAaG~g~R~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (230)
T PRK13385 1 MNYELIFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKG 80 (230)
T ss_pred CceEEEEECCeeccccCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCC
Confidence 4578999999999999977899999999999999999999876679999999988654545555555543 3566777
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceee
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE 222 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~ 222 (294)
+.++.+|++.|+..+++ .+.++++++|+||++++.++++++.+..+++++++.+..++++.++ +|.+...++|+.++.
T Consensus 81 g~~r~~sv~~gl~~~~~-~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~-~~~~~~~i~r~~~~~ 158 (230)
T PRK13385 81 GTERQESVAAGLDRIGN-EDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVK-DKQVIETVDRNELWQ 158 (230)
T ss_pred CchHHHHHHHHHHhccC-CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEc-CCeeEeccCHHHHhh
Confidence 78889999999998853 4788999999999999999999999887788888889889988764 477788889999999
Q ss_pred ccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhhc
Q 022657 223 MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 223 ~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~~ 292 (294)
++||++|+.+.+.++++.....+..+||+..++.+.|.++.+++++..+++||||+||+.|+.+++..++
T Consensus 159 ~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~~~~ 228 (230)
T PRK13385 159 GQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQGDIA 228 (230)
T ss_pred hcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhhccc
Confidence 9999999999999998854334567899989999999999999999999999999999999999987765
No 5
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=100.00 E-value=3.1e-34 Score=253.58 Aligned_cols=226 Identities=41% Similarity=0.622 Sum_probs=189.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 145 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 145 (294)
|++.+||||||.|+|||...||+|++++|+|||+|+++++...+.+++|+||++++..+.+.+........+.++.++.+
T Consensus 2 ~~~~~iILAaG~s~R~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGAE 81 (227)
T ss_pred CceEEEEEcCccccccCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcch
Confidence 67889999999999998667999999999999999999998765689999999987523332222111123456666667
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccC
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQT 225 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~t 225 (294)
+.+|++.|+..++ +.++++++++|+||+++++++++++.+..+++++++.+..+++++++++|.+.++++++.++..++
T Consensus 82 ~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~~~~ 160 (227)
T PRK00155 82 RQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWAAQT 160 (227)
T ss_pred HHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHheeeeC
Confidence 8999999999884 357899999999999999999999998777777888888888766655678888888888999999
Q ss_pred CceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhhc
Q 022657 226 PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 226 P~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~~ 292 (294)
|++|+.+.+.+++....+.+++++|...+++..|.++..++++..++|||||+||+.||.+++.+++
T Consensus 161 p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~~~ 227 (227)
T PRK00155 161 PQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRRIA 227 (227)
T ss_pred CccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhccC
Confidence 9999999999988876667788999989999999999998888778899999999999999987753
No 6
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=100.00 E-value=1.8e-33 Score=246.76 Aligned_cols=217 Identities=39% Similarity=0.644 Sum_probs=183.5
Q ss_pred eEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHH
Q 022657 69 SVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQD 148 (294)
Q Consensus 69 ~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 148 (294)
++||||||.|+||+.+.||+|++++|+|||+|+++++.+++.+++|+||++++..+.+...+... ..+.++.++.++.+
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-AVPKIVAGGDTRQD 79 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-CcEEEeCCCchHHH
Confidence 47999999999999777999999999999999999999865799999999986434444333321 12456666667899
Q ss_pred HHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCCce
Q 022657 149 SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 228 (294)
Q Consensus 149 sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP~~ 228 (294)
|++.|+..++ +.++++++++|+||+++++++++++.+..+++++++.+..++++.++++|.+..+++++.++..++|++
T Consensus 80 sl~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~~ 158 (217)
T TIGR00453 80 SVRNGLKALK-DAEWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQA 158 (217)
T ss_pred HHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCCc
Confidence 9999999882 357899999999999999999999988777777888888888776666788899999999999999999
Q ss_pred eChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 229 IKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 229 f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
|+...+.+++....+.+++++|...++...|.++..++++..+++||||+||+.||+++
T Consensus 159 f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~ 217 (217)
T TIGR00453 159 FRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL 217 (217)
T ss_pred ccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence 99998888887655667889999999999999999999888889999999999999864
No 7
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=100.00 E-value=8.2e-33 Score=242.36 Aligned_cols=215 Identities=42% Similarity=0.625 Sum_probs=183.6
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc--CCceEEeCCCCc
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI--NVDLKFSLPGKE 145 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~--~~~i~~v~~~~~ 145 (294)
+.+||||||.|+||+...||+|++++|+|||+|+++++...+.+++|+||++++..+..... ..+ ...+.++.++.+
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKYGLSKVVKIVEGGAT 79 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-HhcccCCCeEEECCchH
Confidence 36899999999999865689999999999999999999986558999999998754433322 111 224556666667
Q ss_pred HHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 146 RQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 146 ~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
+.+|++.|+..+. .+.++++++++|+||+++++++++++.+...++++++.+..+++++.+++|.+.++++++.+...+
T Consensus 80 ~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~ 159 (218)
T cd02516 80 RQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQ 159 (218)
T ss_pred HHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhc
Confidence 8999999999884 346789999999999999999999999877787788888888887778789999999999999999
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHH
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 283 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~a 283 (294)
+|++|+.+.+.+++....+.|+++||...++...+.++..++++...+|||||+||+.|
T Consensus 160 ~P~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 160 TPQAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred CCCcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 99999999999999887777889999999999999999999988888899999999754
No 8
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=261.01 Aligned_cols=212 Identities=33% Similarity=0.445 Sum_probs=181.0
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 145 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 145 (294)
|++.+||||||.|+||+...||+|++++|+|||+|+++++.+.+.+++|+||+++...+.++.....+. .+.++.++.+
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~-~v~~v~gG~~ 82 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIK-FVTLVTGGAT 82 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCC-eEEEeCCCch
Confidence 678999999999999987789999999999999999999998766899999999875444433332222 2556778888
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccC
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQT 225 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~t 225 (294)
+.+|++.|++.++ .++|+++|+|+||++++.++++++.+...+++++++|+.+++++.+ .+++|+.++.+||
T Consensus 83 r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~------~tldR~~l~~~QT 154 (378)
T PRK09382 83 RQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRAN------ETVDREGLKLIQT 154 (378)
T ss_pred HHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEee------eEcCcccEEEEEC
Confidence 9999999999986 3799999999999999999999998877788899999999887632 2678999999999
Q ss_pred CceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhh
Q 022657 226 PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 226 P~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~ 290 (294)
||.|+...+.+++. .++.+||+.++++..|.++..++++..|++|+||+||..|+.++...
T Consensus 155 PQ~f~~~~l~~a~~----~~~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~~ 215 (378)
T PRK09382 155 PQLSRTKTLKAAAD----GRGDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSPS 215 (378)
T ss_pred CCCCCHHHHHHHHh----CCCCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhccC
Confidence 99999887776542 34778999999999999999999999999999999999999998753
No 9
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.94 E-value=5.5e-25 Score=187.64 Aligned_cols=193 Identities=23% Similarity=0.321 Sum_probs=147.4
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP- 142 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~- 142 (294)
.+.++.+||||||+|+|||. +|.|++++|+|++.++++++.+. ++++++||++++..+.......+. .+.++.+
T Consensus 2 ~~~~v~~VvLAAGrssRmG~--~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~~~--~~~~v~np 76 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMGQ--PKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLAQL--GVTVVVNP 76 (199)
T ss_pred CCcceEEEEEcccccccCCC--cceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhccC--CeEEEeCc
Confidence 35789999999999999996 79999999999999999999985 799999999997433333333333 3444432
Q ss_pred --CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccce
Q 022657 143 --GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTL 220 (294)
Q Consensus 143 --~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l 220 (294)
..+...|++.|++.++.+.+.+++..+|||+++++++.++++.+...+ ....+... ...|
T Consensus 77 d~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~--~~v~p~~~-----g~rG----------- 138 (199)
T COG2068 77 DYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRARG--AAVRPVYG-----GARG----------- 138 (199)
T ss_pred chhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccccC--ceeeeecc-----CCcC-----------
Confidence 235689999999999855568888899999999999999999987663 23333322 1234
Q ss_pred eeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEec-CCceecCCCHHHHHHHHHHHh
Q 022657 221 WEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 221 ~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~-~~~~idVdTpeDL~~ae~~l~ 288 (294)
+|..|..+.+....+...+.| ...++++.+.....++. .....||||||||..++.++.
T Consensus 139 ----~Pv~~~~~~~~~l~~l~GD~G-----~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 139 ----HPVLLSKDLFPALARLSGDVG-----ARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred ----CceeechhHHHHHhhcCCchh-----HHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 789999877655544433333 35788888888888876 567899999999999998764
No 10
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=3.7e-23 Score=192.36 Aligned_cols=225 Identities=20% Similarity=0.248 Sum_probs=171.7
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC--C
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--G 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~--~ 143 (294)
|+..+||||||+||||.++.||-|.+++|+||++|+++++... +.++|++|+++.. +.+++.+.+.. ++.|+.+ .
T Consensus 1 ~~~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~a-e~V~~~~~~~~-~v~~v~Q~eq 77 (460)
T COG1207 1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGA-EQVREALAERD-DVEFVLQEEQ 77 (460)
T ss_pred CCceEEEEecCCCccccCCCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCH-HHHHHHhcccc-CceEEEeccc
Confidence 4578999999999999999999999999999999999999986 7899999999985 67776665433 3556543 3
Q ss_pred CcHHHHHHHHHHhcccCC-CeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccce--E--EeCCCCcEEEecc
Q 022657 144 KERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATI--K--EANSESFVVRTLD 216 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~-~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~~--~--~~~~~G~v~~~~~ 216 (294)
.+..+++.+|..++.++. ..++++.+|.||+++++++++++..... +..++.+...++. - ..+++|.|.++++
T Consensus 78 lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE 157 (460)
T COG1207 78 LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVE 157 (460)
T ss_pred CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEE
Confidence 356899999999994333 3678888999999999999999987644 3345555555542 2 2355678877775
Q ss_pred cc-------ceeeccC-CceeChHHHHHHHHhhhhC----CcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHH
Q 022657 217 RK-------TLWEMQT-PQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLI 282 (294)
Q Consensus 217 ~~-------~l~~~~t-P~~f~~~~l~~~~~~~~~~----g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~ 282 (294)
.. .+..+++ -++|+.+.|.+++.....+ .|++||-..++...|.++..+..+ .....||+...|..
T Consensus 158 ~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~ 237 (460)
T COG1207 158 EKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAE 237 (460)
T ss_pred cCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHH
Confidence 31 1222332 3678887777777765432 389999988888889998877654 34778999999999
Q ss_pred HHHHHhhhhcC
Q 022657 283 AERILNLSSES 293 (294)
Q Consensus 283 ae~~l~~~~~~ 293 (294)
+|+++++|+++
T Consensus 238 ~e~~~q~r~~~ 248 (460)
T COG1207 238 AERIMQRRIAE 248 (460)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 11
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.91 E-value=1.6e-22 Score=179.68 Aligned_cols=213 Identities=17% Similarity=0.222 Sum_probs=141.7
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC-Cc
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KE 145 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~-~~ 145 (294)
++.+||||||+|+||+ ||+|++++|+|||+|+++++.+++++++|+|+++++ .+.+.+..++.++.+..+. ..
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~ 74 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDE---RIADAVESFGGKVVMTSPDHPS 74 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcH---HHHHHHHHcCCEEEEcCcccCc
Confidence 3679999999999997 599999999999999999999865799999998853 3455555555544443221 22
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc-C--cEEEEEEcccc-------e--EEeCCCCcEEE
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAKAT-------I--KEANSESFVVR 213 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~-~--~~i~~~~~~~~-------~--~~~~~~G~v~~ 213 (294)
...++..++..+..+.+.++++++|+|++++++++.+++.+... + +++++++..+. . ...+++|.|..
T Consensus 75 gt~~~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 154 (239)
T cd02517 75 GTDRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALY 154 (239)
T ss_pred hhHHHHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEE
Confidence 34467777776653247788999999999999999999987654 3 33455554321 1 23455677764
Q ss_pred eccc-----------cceeeccCCceeChHHHHHHHHhhhhCCcccccHHHH--HHhCCCCEEEEecCCceecCCCHHHH
Q 022657 214 TLDR-----------KTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDL 280 (294)
Q Consensus 214 ~~~~-----------~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~--l~~~g~~v~~v~~~~~~idVdTpeDL 280 (294)
+.++ ..-+....-++|+.+.+....... ...++.++...+ +...|.++..+..+..|+|||||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl 233 (239)
T cd02517 155 FSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALP-PSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDL 233 (239)
T ss_pred ecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCC-CchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHH
Confidence 4321 011112233567766655443321 122444444333 24567778877666679999999999
Q ss_pred HHHHHH
Q 022657 281 LIAERI 286 (294)
Q Consensus 281 ~~ae~~ 286 (294)
..|+++
T Consensus 234 ~~a~~~ 239 (239)
T cd02517 234 ERVEAL 239 (239)
T ss_pred HHHHhC
Confidence 999863
No 12
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.2e-22 Score=180.34 Aligned_cols=213 Identities=16% Similarity=0.223 Sum_probs=138.5
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC-C
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-K 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~-~ 144 (294)
|++.+||||||+|+||+. |+|++++|+|||+|+++++.+++++++|+|+++++ .+.+.++.++.++.+..+. .
T Consensus 1 m~~~aiIlA~g~s~R~~~---K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~---~i~~~~~~~~~~v~~~~~~~~ 74 (238)
T PRK13368 1 MKVVVVIPARYGSSRLPG---KPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ---RIEDAVEAFGGKVVMTSDDHL 74 (238)
T ss_pred CcEEEEEecCCCCCCCCC---CccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH---HHHHHHHHcCCeEEecCccCC
Confidence 468999999999999974 99999999999999999999875799999999763 3455666666555433211 1
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EE-EEEEcc------cce---EEeCCCCcEE
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AV-LGVPAK------ATI---KEANSESFVV 212 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i-~~~~~~------~~~---~~~~~~G~v~ 212 (294)
....++..++..++ .+.++++++|+||++++.++++++.+...+. ++ ++.+.. ++. ...+++|.+.
T Consensus 75 ~g~~~~~~a~~~~~--~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~ 152 (238)
T PRK13368 75 SGTDRLAEVMLKIE--ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDAL 152 (238)
T ss_pred CccHHHHHHHHhCC--CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEE
Confidence 22335777777663 4788999999999999999999998865432 22 232221 011 1334567776
Q ss_pred Eeccccc------e----eeccCCceeChHHHHHHHHhhhhCCcc-ccc-HHHHHHhCCCCEEEEecCCceecCCCHHHH
Q 022657 213 RTLDRKT------L----WEMQTPQVIKPDLLKKGFELVNREGLE-VTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDL 280 (294)
Q Consensus 213 ~~~~~~~------l----~~~~tP~~f~~~~l~~~~~~~~~~g~~-~td-~~~~l~~~g~~v~~v~~~~~~idVdTpeDL 280 (294)
.+.++.. . +....-++|+.+.+.. +......+.+ +.. +...+...|.++..+..+..|+|||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl 231 (238)
T PRK13368 153 YFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQ-FSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDL 231 (238)
T ss_pred EeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHH-HHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHH
Confidence 5543211 1 1111125677665554 2211111111 111 111233357778887777889999999999
Q ss_pred HHHHHHH
Q 022657 281 LIAERIL 287 (294)
Q Consensus 281 ~~ae~~l 287 (294)
+.|+.++
T Consensus 232 ~~a~~~~ 238 (238)
T PRK13368 232 ERVRAIM 238 (238)
T ss_pred HHHHHhC
Confidence 9999864
No 13
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=1.4e-22 Score=196.01 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=157.2
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-- 141 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-- 141 (294)
+++++.|||||||.|+||+...||+|++++|+|||+|+++++... ++++|+|++++.. +.+.+++..++.++.++.
T Consensus 2 ~~~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~-~~i~~~~~~~~~~~~~~~~~ 79 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGA-EAVAAAAAKIAPDAEIFVQK 79 (446)
T ss_pred ccccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCH-HHHHHHhhccCCCceEEEcC
Confidence 457789999999999999877899999999999999999999986 6999999999875 455555554433333332
Q ss_pred CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh-cCcEEEEEEcccce----EEeCCCCcEEEecc
Q 022657 142 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATI----KEANSESFVVRTLD 216 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~-~~~~i~~~~~~~~~----~~~~~~G~v~~~~~ 216 (294)
...+..++++.++..+....+.++++++|+|+++++.++++++.... .++++++.+..++. ... ++|.+.++.+
T Consensus 80 ~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~g~~~~-~~g~v~~~~e 158 (446)
T PRK14353 80 ERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADVVVLGFRAADPTGYGRLIV-KGGRLVAIVE 158 (446)
T ss_pred CCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEeCCCCcceEEEE-CCCeEEEEEE
Confidence 23345888999998875323567788999999999999999985543 34455556654431 122 4677776654
Q ss_pred ccce--------eeccCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHHHH
Q 022657 217 RKTL--------WEMQTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIA 283 (294)
Q Consensus 217 ~~~l--------~~~~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~~a 283 (294)
+... .....-+.|+.+.+.++++.... ..+++++....+.+.|.++..+..+ ..|+|||||+||..|
T Consensus 159 k~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a 238 (446)
T PRK14353 159 EKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEA 238 (446)
T ss_pred CCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHH
Confidence 3211 00011134555555555543321 2255667667777788888888876 458999999999999
Q ss_pred HHHHhhh
Q 022657 284 ERILNLS 290 (294)
Q Consensus 284 e~~l~~~ 290 (294)
+.++..+
T Consensus 239 ~~~~~~~ 245 (446)
T PRK14353 239 EAVWQAR 245 (446)
T ss_pred HHHHHHH
Confidence 9887654
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=1.4e-22 Score=196.57 Aligned_cols=220 Identities=17% Similarity=0.231 Sum_probs=153.0
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC--CC
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GK 144 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~--~~ 144 (294)
++.|||||||+||||+.+.||+|++++|+|||+|++++|.+. ++++|+||+++.. +.+++.+... .+.++.+ ..
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~-~~i~~~~~~~--~~~~v~~~~~~ 80 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRA-DMVRAAFPDE--DARFVLQEQQL 80 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCH-HHHHHhcccc--CceEEEcCCCC
Confidence 588999999999999977899999999999999999999886 6899999999874 4555554332 2344432 23
Q ss_pred cHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccce--E-EeCCCCcEEEeccccce
Q 022657 145 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI--K-EANSESFVVRTLDRKTL 220 (294)
Q Consensus 145 ~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~--~-~~~~~G~v~~~~~~~~l 220 (294)
+...+++.+++.++. +.+.++++++|+||++++.++++++.+...+++++..+..++. . ...++|+|.++.++...
T Consensus 81 Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~~~~~~g~v~~~~g~V~~~~ek~~~ 160 (456)
T PRK14356 81 GTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVEAKDY 160 (456)
T ss_pred CcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEcCCeEEEEEECCCC
Confidence 457889999988853 2467888999999999999999998865445555555543331 1 12246777776654321
Q ss_pred ee----------ccCCceeChHHHHHHHHhhh---h-CCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHHHH
Q 022657 221 WE----------MQTPQVIKPDLLKKGFELVN---R-EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAE 284 (294)
Q Consensus 221 ~~----------~~tP~~f~~~~l~~~~~~~~---~-~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~ae 284 (294)
.. ...-+.|+.+.+...+.... . ..+++++....+...|.++..+... +.|+|||||+||..++
T Consensus 161 ~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~ 240 (456)
T PRK14356 161 DEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSE 240 (456)
T ss_pred ChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHH
Confidence 10 01123466665444433221 1 2256666666666667778777653 4589999999999999
Q ss_pred HHHhhh
Q 022657 285 RILNLS 290 (294)
Q Consensus 285 ~~l~~~ 290 (294)
+++..+
T Consensus 241 ~~l~~~ 246 (456)
T PRK14356 241 ELLRAR 246 (456)
T ss_pred HHHHHH
Confidence 998765
No 15
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.90 E-value=5.5e-22 Score=176.92 Aligned_cols=214 Identities=15% Similarity=0.182 Sum_probs=139.8
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC-C
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-K 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~-~ 144 (294)
|++.+||||||+|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++++ .+.+.+..++..+.+..+. .
T Consensus 1 m~~~~iIlA~g~S~R~~---~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~---~i~~~~~~~~~~v~~~~~~~~ 73 (245)
T PRK05450 1 MKFLIIIPARYASTRLP---GKPLADIGGKPMIVRVYERASKA-GADRVVVATDDE---RIADAVEAFGGEVVMTSPDHP 73 (245)
T ss_pred CceEEEEecCCCCCCCC---CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcH---HHHHHHHHcCCEEEECCCcCC
Confidence 67899999999999996 59999999999999999999987 799999998753 3445555556555443221 1
Q ss_pred cHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEccc---------ceEEeCCCCcEE
Q 022657 145 ERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA---------TIKEANSESFVV 212 (294)
Q Consensus 145 ~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~---------~~~~~~~~G~v~ 212 (294)
....++..++..+. .+.++++++++|+||++++.++++++.+... +.++++++..+ .-..++++|.|.
T Consensus 74 ~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~ 153 (245)
T PRK05450 74 SGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRAL 153 (245)
T ss_pred CchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEE
Confidence 12334444554442 2357788899999999999999999987654 33444444311 112246678876
Q ss_pred Eecccc--------------ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHH--HHhCCCCEEEEecC-CceecCC
Q 022657 213 RTLDRK--------------TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGS-YTNIKVT 275 (294)
Q Consensus 213 ~~~~~~--------------~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~--l~~~g~~v~~v~~~-~~~idVd 275 (294)
++.++. ..+....-+.|+.+.+....+.. ...+..++...+ +...|.+++.+..+ ..|+|||
T Consensus 154 ~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~ 232 (245)
T PRK05450 154 YFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLP-PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVD 232 (245)
T ss_pred EecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCC-CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcC
Confidence 544321 01122223566666555443321 122222333221 23467788887776 4899999
Q ss_pred CHHHHHHHHHHH
Q 022657 276 TPDDLLIAERIL 287 (294)
Q Consensus 276 TpeDL~~ae~~l 287 (294)
||+||+.|++.+
T Consensus 233 ~~~dl~~a~~~~ 244 (245)
T PRK05450 233 TPEDLERVRALL 244 (245)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 16
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.90 E-value=8.6e-23 Score=179.13 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=134.7
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe------
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS------ 140 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v------ 140 (294)
++.+||||||.|+||+. |+|++++|+|||+|+++++.+++.+++|+|+++.+ .+.+.+..++..+.+.
T Consensus 1 ~~~~iIlA~G~s~R~~~---K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~---~i~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd02513 1 KILAIIPARGGSKGIPG---KNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDE---EIAEVARKYGAEVPFLRPAELA 74 (223)
T ss_pred CeEEEEecCCCCCCCCC---cccchhCCccHHHHHHHHHHhCCCCCEEEEECCcH---HHHHHHHHhCCCceeeCChHHC
Confidence 46799999999999974 99999999999999999999876689999988643 2333444455322232
Q ss_pred CCCCcHHHHHHHHHHhccc---CCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccceEEe---CCCCcEE
Q 022657 141 LPGKERQDSVYSGLQEVDF---NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKEA---NSESFVV 212 (294)
Q Consensus 141 ~~~~~~~~sv~~al~~~~~---~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~~~~~---~~~G~v~ 212 (294)
.+..++.+++..+++.++. +.++++++++|+||+++++++++++.+... ++++.+.+..++.+.. .++|...
T Consensus 75 ~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (223)
T cd02513 75 TDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEP 154 (223)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccCCcee
Confidence 2334668899999987753 247899999999999999999999988654 4555666655543321 1222111
Q ss_pred -EeccccceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHH---hCCCCEEEEe-cCCceecCCCHHHHHHHHHHH
Q 022657 213 -RTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE---HLKHPVYITE-GSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 213 -~~~~~~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~---~~g~~v~~v~-~~~~~idVdTpeDL~~ae~~l 287 (294)
...++......++|+.|... .++++.....+.+ .+|.++..+. .+...+|||||+||+.||.++
T Consensus 155 ~~~~~~~~~~~q~~~~~~~~n-----------~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~ 223 (223)
T cd02513 155 VNYPEDKRTRRQDLPPAYHEN-----------GAIYIAKREALLESNSFFGGKTGPYEMPRERSIDIDTEEDFELAEALL 223 (223)
T ss_pred ccCcccccCCcCCChhHeeEC-----------CEEEEEEHHHHHhcCCccCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence 11122223333445444321 1233333222222 1467886544 456799999999999999764
No 17
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.90 E-value=2.4e-22 Score=173.28 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=124.0
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe--CCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPG 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v--~~~ 143 (294)
|++.+||||||.|+|||+ .||+|++++|+|||+|+++.+. +.+++|+||++... +.+ ...+..+... .+.
T Consensus 2 ~~~~~vILA~G~s~Rm~~-~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~~----~~~~~~~v~~~~~~~ 73 (193)
T PRK00317 2 PPITGVILAGGRSRRMGG-VDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-ARY----AAFGLPVIPDSLADF 73 (193)
T ss_pred CCceEEEEcCCCcccCCC-CCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HHH----HhcCCcEEeCCCCCC
Confidence 678999999999999964 4899999999999999999998 47999999988653 222 2233222111 112
Q ss_pred CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeec
Q 022657 144 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEM 223 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~ 223 (294)
.++..|++.|+...+ .++++++++|+|+++++.++.+++.+.+.+..++... .++.
T Consensus 74 ~g~~~~i~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~---------~~~~------------- 129 (193)
T PRK00317 74 PGPLAGILAGLKQAR--TEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAWAH---------DGGR------------- 129 (193)
T ss_pred CCCHHHHHHHHHhcC--CCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEEEe---------eCCc-------------
Confidence 456889999998654 5789999999999999999999997654333222111 1121
Q ss_pred cCCc--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEe-cCCceecCCCHHHHHHHHHH
Q 022657 224 QTPQ--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 224 ~tP~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~-~~~~~idVdTpeDL~~ae~~ 286 (294)
.+|. .|+...+....+....... ....+++..+.....++ ....++|||||+||+.+++.
T Consensus 130 ~~Pl~~~~~~~~~~~l~~~l~~g~~---~~~~~l~~~~~~~v~~~~~~~~~~dinTped~~~~~~~ 192 (193)
T PRK00317 130 LHPTFALYSVALLPDLEAYLAAGER---KVMAFYARHGGVAVDFSDPKDAFFNINTPEDLAQLEEL 192 (193)
T ss_pred ceeEEEEEeHHHHHHHHHHHHcCCc---hHHHHHHHCCcEEEeCCCCCCccCcCCCHHHHHHHHhh
Confidence 1455 6776544443322211112 12345666553332233 23457899999999998865
No 18
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=1.8e-22 Score=171.60 Aligned_cols=182 Identities=21% Similarity=0.309 Sum_probs=124.9
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC---CCC
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---PGK 144 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~---~~~ 144 (294)
+.+||||||.|+|||. ||+|++++|+|||+|+++++... ++++|+||+++... ...+....++ +.++. ...
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~-~~~~~~~~~~--~~~~~~~~~~~ 74 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEAD-AVRAALAGLP--VVVVINPDWEE 74 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHH-HHHHHhcCCC--eEEEeCCChhh
Confidence 4689999999999986 79999999999999999999976 68999999998642 3333333333 33332 224
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
++..++..|+..+....++++++.+|+||++++.++++++.+...+..+ +++..+. ..+
T Consensus 75 G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~-v~~~~~g-----~~~--------------- 133 (186)
T cd04182 75 GMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGI-VAPVYQG-----RRG--------------- 133 (186)
T ss_pred CHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE-EEEecCC-----ccC---------------
Confidence 6789999999988633578899999999999999999999876444333 2232110 011
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEE-EEecCCceecCCCHHHHH
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDLL 281 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~-~v~~~~~~idVdTpeDL~ 281 (294)
+|..|+...+....+...+.| ...++...+.... .+.....++|||||+||+
T Consensus 134 ~P~~~~~~~~~~l~~~~g~~g-----~~~~~~~~~~~~~~~~~~~~~~~nint~~d~~ 186 (186)
T cd04182 134 HPVLFPRSLFPELLALSGDKG-----ARSLLRAHPDRVVVEVDDPGVLIDIDTPEDLR 186 (186)
T ss_pred CCeeECHHHHHHHHccCCChh-----HHHHHHhCcccEEEEeCCCCcccCCCCHHHhC
Confidence 577787665444333221222 2355666554443 333445688999999984
No 19
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.90 E-value=3.1e-22 Score=176.25 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=148.3
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHHH
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDS 149 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~s 149 (294)
|||||||.|+||+..+||+|++++|+|||+|+++++.++ ++++|+|++++.. +.+.+++..++..+.......+..++
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~g~~~a 78 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGA-EQVKKALANPNVEFVLQEEQLGTGHA 78 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCH-HHHHHHhCCCCcEEEECCCCCCCHHH
Confidence 699999999999877899999999999999999999986 6999999999874 56666665544322221233456899
Q ss_pred HHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEcccc----eEEeCCCCcEEEeccccce---
Q 022657 150 VYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKTL--- 220 (294)
Q Consensus 150 v~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~~----~~~~~~~G~v~~~~~~~~l--- 220 (294)
+++|+..+..+.+.++++++|+||++.+.+.++++.+.+.+ .++.+.+..++ ....+++|.|.++.++...
T Consensus 79 i~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~ 158 (229)
T cd02540 79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEE 158 (229)
T ss_pred HHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChH
Confidence 99999988632467888999999999999999999886543 33444444333 1223556778776654321
Q ss_pred -----eeccCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHH
Q 022657 221 -----WEMQTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDL 280 (294)
Q Consensus 221 -----~~~~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL 280 (294)
......+.|+.+.+.++++.... ..+++++....+...|.++..++.+ +.|+.|+||+||
T Consensus 159 ~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 159 EKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 11123567776666665554221 2255677667777778778777654 669999999985
No 20
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.90 E-value=2.3e-22 Score=174.87 Aligned_cols=190 Identities=17% Similarity=0.226 Sum_probs=126.7
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL 141 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~ 141 (294)
|..+|++.+||||||+|+|||. +|+|++++|+|||+|+++++.. .+++|+||+++. +.+..... . .+.++.
T Consensus 2 ~~~~~~~~~vILAgG~s~Rmg~--~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~--~~~~~~~~-~--~~~~i~ 72 (200)
T PRK02726 2 KTVKNNLVALILAGGKSSRMGQ--DKALLPWQGVPLLQRVARIAAA--CADEVYIITPWP--ERYQSLLP-P--GCHWLR 72 (200)
T ss_pred CCcCCCceEEEEcCCCcccCCC--CceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCH--HHHHhhcc-C--CCeEec
Confidence 3345789999999999999997 7999999999999999999975 479999998753 33333221 1 244442
Q ss_pred ---CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc-CcEEEEEEcccceEEeCCCCcEEEeccc
Q 022657 142 ---PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDR 217 (294)
Q Consensus 142 ---~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~-~~~i~~~~~~~~~~~~~~~G~v~~~~~~ 217 (294)
.+.++..|++.|+..++ .++++++++|+||+++++++.+++..... +..+.+++.. ++.
T Consensus 73 ~~~~~~G~~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~--------~~~------- 135 (200)
T PRK02726 73 EPPPSQGPLVAFAQGLPQIK--TEWVLLLACDLPRLTVDVLQEWLQQLENVPEEAIAALPKQ--------EKG------- 135 (200)
T ss_pred CCCCCCChHHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHhhcCCCCceEEEecC--------CCC-------
Confidence 33567899999999886 47899999999999999999999987542 2223322221 111
Q ss_pred cceeeccCCc--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHH
Q 022657 218 KTLWEMQTPQ--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 218 ~~l~~~~tP~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~ 286 (294)
.+|. .|+...+........+.+.. ...++...+.....++....++|||||+||+.+..+
T Consensus 136 ------~~Pl~~~~~~~~~~~l~~~~~~g~~~---l~~~l~~~~~~~v~~~~~~~~~ninTped~~~~~~~ 197 (200)
T PRK02726 136 ------WEPLCGFYRRRCLPSLEQFIQQGGRS---FQGWLAQVPVQELALSDPDMLFNCNTPEDLATIQGI 197 (200)
T ss_pred ------cccEEeeecHHHHHHHHHHHHhCCcc---HHHHHhhCCceEecCCCchhhccCCCHHHHHHHhhc
Confidence 1453 36665544443332222221 123455544322223333457899999999987653
No 21
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.90 E-value=3e-22 Score=178.76 Aligned_cols=202 Identities=18% Similarity=0.241 Sum_probs=139.3
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe----CCCCc
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKE 145 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v----~~~~~ 145 (294)
+||||||.|+||+ +|+|++++|+|||+|+++++... ++++|+|+++++ .+.+.+.+++.++... .++..
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~~---~i~~~~~~~g~~~v~~~~~~~~Gt~ 74 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDIFGKPMIVHVAENANES-GADRCIVATDDE---SVAQTCQKFGIEVCMTSKHHNSGTE 74 (238)
T ss_pred EEEecCCCCCCCC---CCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCHH---HHHHHHHHcCCEEEEeCCCCCChhH
Confidence 6999999999997 49999999999999999999886 599999998864 2455556666543332 12333
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh--cCcEEEEEEccc--------ceEEe-CCCCcE---
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKA--------TIKEA-NSESFV--- 211 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~--~~~~i~~~~~~~--------~~~~~-~~~G~v--- 211 (294)
+..++..++.. . +.++|+++++|+||++++.|+++++.+.. .++++++++..+ +++.+ +.+|++
T Consensus 75 r~~~~~~~l~~-~-~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyf 152 (238)
T TIGR00466 75 RLAEVVEKLAL-K-DDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYF 152 (238)
T ss_pred HHHHHHHHhCC-C-CCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEe
Confidence 34444444421 1 35789999999999999999999998854 466777888766 66655 556753
Q ss_pred EE---eccccceeeccCCc-----------eeChHHHHHHHHhhhhCCcccccHHHHHH--hCCCCEEEEecCCc-eecC
Q 022657 212 VR---TLDRKTLWEMQTPQ-----------VIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKV 274 (294)
Q Consensus 212 ~~---~~~~~~l~~~~tP~-----------~f~~~~l~~~~~~~~~~g~~~td~~~~l~--~~g~~v~~v~~~~~-~idV 274 (294)
.+ .++|+.++..++|+ +|+.+.|.+...+ ....++..+..+.++ +.|.++.++..+.. ...|
T Consensus 153 sr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~-~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~v 231 (238)
T TIGR00466 153 SRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAW-KPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGV 231 (238)
T ss_pred cCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhC-CCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCC
Confidence 22 23456555556665 4556666655543 233355444444443 46888888776555 5799
Q ss_pred CCHHHHH
Q 022657 275 TTPDDLL 281 (294)
Q Consensus 275 dTpeDL~ 281 (294)
|||+||+
T Consensus 232 dt~~d~~ 238 (238)
T TIGR00466 232 DTQEDLE 238 (238)
T ss_pred CChHHcC
Confidence 9999984
No 22
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4.3e-22 Score=176.24 Aligned_cols=217 Identities=20% Similarity=0.296 Sum_probs=163.1
Q ss_pred eeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh---hcCCceEEeC
Q 022657 68 VSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~---~~~~~i~~v~ 141 (294)
+++||||||.|||+. ...||+|+|+.+||||.|.++.|..+ ||++|.||++++....+++++. ++++++.++.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCccccCcceEEEe
Confidence 358999999999995 56799999999999999999999986 8999999999977677777764 3467888876
Q ss_pred CCC--cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh--cCcEEEEEEcccc----eEEeCCCCcEEE
Q 022657 142 PGK--ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKAT----IKEANSESFVVR 213 (294)
Q Consensus 142 ~~~--~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~--~~~~i~~~~~~~~----~~~~~~~G~v~~ 213 (294)
+.+ +.++++..|-.++.+ .+++ +..+|.-|.. .+.++++.+.+ .++.+++.++.++ ++..+++|++..
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~-~~f~-l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGD-DDFV-LYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCC-CceE-EEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEE
Confidence 544 458888888888873 2444 4458866554 88999988765 5778888888765 455677788876
Q ss_pred eccc-----cceeeccCCceeChHHHHHHHHhhh---hCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHH
Q 022657 214 TLDR-----KTLWEMQTPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAER 285 (294)
Q Consensus 214 ~~~~-----~~l~~~~tP~~f~~~~l~~~~~~~~---~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~ 285 (294)
..++ +++ .+..-+.|+... .++.+... +..+++||..+.+...|..+.......+|+|++|++||..|.+
T Consensus 156 l~EKP~~P~SNl-AvtGlY~~d~~V-f~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~ 233 (286)
T COG1209 156 LEEKPKEPKSNL-AVTGLYFYDPSV-FEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233 (286)
T ss_pred eEECCCCCCCce-eEEEEEEeChHH-HHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHH
Confidence 6654 333 222224455443 33333332 2348999999999999999888887779999999999999998
Q ss_pred HHhhhh
Q 022657 286 ILNLSS 291 (294)
Q Consensus 286 ~l~~~~ 291 (294)
++....
T Consensus 234 ~i~~~~ 239 (286)
T COG1209 234 FVRTVS 239 (286)
T ss_pred HHHHHH
Confidence 887543
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=190.07 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=155.1
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--CC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PG 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~ 143 (294)
|++.|||||||.|+||+..+||+|++++|+|||+|+++++.+. ++++++|++++.. +.+++++.. .+.++. ..
T Consensus 1 m~~~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~-~~i~~~~~~---~~~~~~~~~~ 75 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGA-EEVKEVLGD---RSEFALQEEQ 75 (458)
T ss_pred CCceEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCH-HHHHHHhcC---CcEEEEcCCC
Confidence 6788999999999999977899999999999999999999986 7999999999875 445555432 123332 23
Q ss_pred CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc--e--EEeCCCCcEEEeccc
Q 022657 144 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--I--KEANSESFVVRTLDR 217 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~--~--~~~~~~G~v~~~~~~ 217 (294)
.+...+++.++..++...+.++++++|+|+++++.++++++.+.+.++ .+++.+..++ + ...+++|.+.++.++
T Consensus 76 ~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek 155 (458)
T PRK14354 76 LGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQ 155 (458)
T ss_pred CCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEEC
Confidence 346889999998885323678889999999999999999998865443 3333333332 2 223556778777654
Q ss_pred cc-------eeecc-CCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHHH
Q 022657 218 KT-------LWEMQ-TPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIA 283 (294)
Q Consensus 218 ~~-------l~~~~-tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~a 283 (294)
.. .+..+ .+++|+.+.+.+.+..... ..+++++....+...+.+++.+..+ +.++++||++||+.|
T Consensus 156 ~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a 235 (458)
T PRK14354 156 KDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEA 235 (458)
T ss_pred CCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHH
Confidence 21 11222 2577887656555543221 1245566656666667778777655 558999999999999
Q ss_pred HHHHhhh
Q 022657 284 ERILNLS 290 (294)
Q Consensus 284 e~~l~~~ 290 (294)
+.++..+
T Consensus 236 ~~ll~~~ 242 (458)
T PRK14354 236 EKVMRRR 242 (458)
T ss_pred HHHHHHH
Confidence 9877543
No 24
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.89 E-value=6.3e-22 Score=169.17 Aligned_cols=181 Identities=20% Similarity=0.244 Sum_probs=122.4
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC---CCcH
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKER 146 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~---~~~~ 146 (294)
+||||||.|+|||. ||+|++++|+|||+|+++++.+. ++++|+||+++...+.++.....++ +.++.. ..++
T Consensus 2 ~iIla~G~s~R~g~--~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~--v~~v~~~~~~~g~ 76 (188)
T TIGR03310 2 AIILAAGLSSRMGQ--NKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLANHSN--ITLVHNPQYAEGQ 76 (188)
T ss_pred eEEECCCCcccCCC--CceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhccCCC--eEEEECcChhcCH
Confidence 79999999999985 89999999999999999999876 6999999999875333333332333 333322 2457
Q ss_pred HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCC
Q 022657 147 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTP 226 (294)
Q Consensus 147 ~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP 226 (294)
..|+..|++. ..+.+.++++++|+||++++.++++++.+...+..++ ++.. +++. .+|
T Consensus 77 ~~si~~~l~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~-~~~~-------~~~~-------------~~P 134 (188)
T TIGR03310 77 SSSIKLGLEL-PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV-VPLY-------KGKR-------------GHP 134 (188)
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE-Eeec-------CCcc-------------CCC
Confidence 8899999982 2235788999999999999999999998765443222 2211 1111 157
Q ss_pred ceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEec--CCceecCCCHHHHHH
Q 022657 227 QVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLI 282 (294)
Q Consensus 227 ~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~--~~~~idVdTpeDL~~ 282 (294)
..|+...+....+...+. ....++......+..++. ...++|||||+||+.
T Consensus 135 l~~~~~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 135 VLFPRKLFPELLALTGDT-----GGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred EEECHHHHHHHHhCCCCc-----cHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence 778776554433321111 123566655444444443 345899999999974
No 25
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.89 E-value=6e-22 Score=170.42 Aligned_cols=184 Identities=19% Similarity=0.247 Sum_probs=120.6
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchH--HHHHH-HhhcCCceEEeCC-C
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD--IFEET-KEKINVDLKFSLP-G 143 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~--~~~~~-~~~~~~~i~~v~~-~ 143 (294)
+.+||||||+|+|||. +|+|++++|+|||+|+++.+.+. .+++|+||+++...+ .+.+. ....+..+....+ .
T Consensus 1 ~~~vILAgG~s~Rmg~--~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE--NKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDAC 77 (190)
T ss_pred CeEEEEcCCccccCCC--CceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChh
Confidence 3589999999999997 79999999999999999887664 799999999876421 11111 1111222222222 2
Q ss_pred CcHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceee
Q 022657 144 KERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE 222 (294)
Q Consensus 144 ~~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~ 222 (294)
.++.+|++.|++.+. .+.++++++++|+|+++++.+..+++.+...+..+++ +.. +|.
T Consensus 78 ~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~-~~~--------~g~------------ 136 (190)
T TIGR03202 78 EGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDYVA-ASF--------KGK------------ 136 (190)
T ss_pred hhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEE-Eec--------CCC------------
Confidence 357899999999863 2468899999999999999999999987654332221 211 221
Q ss_pred ccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEE-EEecCCceecCCCHHHH
Q 022657 223 MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDL 280 (294)
Q Consensus 223 ~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~-~v~~~~~~idVdTpeDL 280 (294)
..+|..|+.+.+....+...+.| ...++++.+.... .+.....++|||||+||
T Consensus 137 ~~~p~~~~~~~~~~l~~~~~~~g-----~~~~l~~~~~~~~~~~~~~~~~~dint~ed~ 190 (190)
T TIGR03202 137 PRPPILFSKSLFPKLKALKGDEG-----ARALLRKDKSGLALPVADASAFFDIDTKEDY 190 (190)
T ss_pred CCCCeEEcHHHHHHHHhCCCCcc-----HHHHHhhCCcceEEecCCCccccCCCChhhC
Confidence 12566777765544433222233 2355655543222 23333457899999996
No 26
>PLN02917 CMP-KDO synthetase
Probab=99.89 E-value=3.1e-21 Score=177.09 Aligned_cols=218 Identities=14% Similarity=0.158 Sum_probs=144.3
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-C
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-P 142 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~ 142 (294)
..|++.+||||||.|+||+. |+|++++|+|||+|+++++..++.++.|+|+++. +.+.+.+..++..+.+.. .
T Consensus 44 ~~~~i~aIIpA~G~SsR~~~---K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~---e~I~~~~~~~~v~vi~~~~~ 117 (293)
T PLN02917 44 FRSRVVGIIPARFASSRFEG---KPLVHILGKPMIQRTWERAKLATTLDHIVVATDD---ERIAECCRGFGADVIMTSES 117 (293)
T ss_pred cCCcEEEEEecCCCCCCCCC---CCeeeECCEEHHHHHHHHHHcCCCCCEEEEECCh---HHHHHHHHHcCCEEEeCCcc
Confidence 34788999999999999984 9999999999999999999976556766655443 334555555554333221 1
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC-cEEEEE--Ec--ccc-----eE-EeCCCCcE
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGV--PA--KAT-----IK-EANSESFV 211 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~-~~i~~~--~~--~~~-----~~-~~~~~G~v 211 (294)
..+....+..|++.+..+.+.++++++|+||+++++++++++.+.... ..++.. +. .+. ++ ..+++|.+
T Consensus 118 ~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~a 197 (293)
T PLN02917 118 CRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYA 197 (293)
T ss_pred cCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeE
Confidence 122345567788877644678999999999999999999999876543 322211 11 111 22 13545753
Q ss_pred E----Eec--ccc------c-eeeccCCceeChHHHHHHHHhhhhC----CcccccHHHHHHhCCCCEEEEecCCceecC
Q 022657 212 V----RTL--DRK------T-LWEMQTPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGSYTNIKV 274 (294)
Q Consensus 212 ~----~~~--~~~------~-l~~~~tP~~f~~~~l~~~~~~~~~~----g~~~td~~~~l~~~g~~v~~v~~~~~~idV 274 (294)
. ..+ +++ . .+....-++|+.+.|. .+...... .++++|.. ..+.|.++..+..+.....|
T Consensus 198 lyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GV 274 (293)
T PLN02917 198 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGV 274 (293)
T ss_pred EEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCC
Confidence 3 312 122 0 1122234678887777 44443322 25677664 44678888777655567799
Q ss_pred CCHHHHHHHHHHHhhh
Q 022657 275 TTPDDLLIAERILNLS 290 (294)
Q Consensus 275 dTpeDL~~ae~~l~~~ 290 (294)
|||+||+.+|++++.+
T Consensus 275 nt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 275 DTPEDVEKIEALMRER 290 (293)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999754
No 27
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.89 E-value=8.4e-22 Score=189.54 Aligned_cols=216 Identities=17% Similarity=0.210 Sum_probs=148.4
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC--
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-- 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~-- 143 (294)
|++.|||||||.||||+..+||+|+|++|+|||+|+++.+.+. +++|+|++++.. +.+.+++.++...+.++.+.
T Consensus 1 m~~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~-~~i~~~~~~~~~~v~~~~~~~~ 77 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQK-ERIKEAVLEYFPGVIFHTQDLE 77 (430)
T ss_pred CCccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCH-HHHHHHHHhcCCceEEEEecCc
Confidence 5678999999999999988899999999999999999999874 689999999875 55666666543345554321
Q ss_pred --CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccce----EEeCCCCcEEEeccc
Q 022657 144 --KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDR 217 (294)
Q Consensus 144 --~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~----~~~~~~G~v~~~~~~ 217 (294)
.+...+++. +....+.++++++|.|+++++.++++++. ..+..+.+.+..++. ... ++|++.++.++
T Consensus 78 ~~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~g~v~~-d~g~v~~i~e~ 150 (430)
T PRK14359 78 NYPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLEN--DADIVMSVFHLADPKGYGRVVI-ENGQVKKIVEQ 150 (430)
T ss_pred cCCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHhC--CCCEEEEEEEcCCCccCcEEEE-cCCeEEEEEEC
Confidence 223555544 22224678889999999999999887752 223344454544331 122 35777766543
Q ss_pred cce--------eeccCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHHHHH
Q 022657 218 KTL--------WEMQTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAE 284 (294)
Q Consensus 218 ~~l--------~~~~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~~ae 284 (294)
... ......+.|+.+.+.+....... ..++++|....+...|.++..++.+ ..|.|||||+||..|+
T Consensus 151 ~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~ 230 (430)
T PRK14359 151 KDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAE 230 (430)
T ss_pred CCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHH
Confidence 211 11112466777766655443221 2356777777777778888888776 5699999999999999
Q ss_pred HHHhhhh
Q 022657 285 RILNLSS 291 (294)
Q Consensus 285 ~~l~~~~ 291 (294)
.++..+.
T Consensus 231 ~~l~~~~ 237 (430)
T PRK14359 231 EIMQERI 237 (430)
T ss_pred HHHHHHH
Confidence 9887653
No 28
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.89 E-value=3.4e-21 Score=186.25 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=154.3
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHH
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQ 147 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 147 (294)
+.+||||||.|+||+..+||+|++++|+|||+|+++++.++ ++++|+|++++.. +.+.+++..++..+.......+..
T Consensus 1 m~aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~-~~i~~~~~~~~i~~~~~~~~~G~~ 78 (451)
T TIGR01173 1 LSVVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGA-EQVRKALANRDVNWVLQAEQLGTG 78 (451)
T ss_pred CeEEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCH-HHHHHHhcCCCcEEEEcCCCCchH
Confidence 35899999999999987899999999999999999999986 7899999999874 556666665543322212223568
Q ss_pred HHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccc----eEEeCCCCcEEEeccccce---
Q 022657 148 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRTLDRKTL--- 220 (294)
Q Consensus 148 ~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~----~~~~~~~G~v~~~~~~~~l--- 220 (294)
++++.++..+++ .+.++++++|+||++++.++++++.+.+.+.++++.+..+. ....+++|.+.++.++...
T Consensus 79 ~ai~~a~~~l~~-~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~ 157 (451)
T TIGR01173 79 HAVLQALPFLPD-DGDVLVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAE 157 (451)
T ss_pred HHHHHHHHhcCC-CCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChH
Confidence 899999998863 35677888999999999999999987665544555554332 2234556778777654211
Q ss_pred -----eeccCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecCC--ceecCCCHHHHHHHHHHHhh
Q 022657 221 -----WEMQTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 221 -----~~~~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~~--~~idVdTpeDL~~ae~~l~~ 289 (294)
......+.|+.+.+.+.+..... ..+++++....+...|.+++.++.+. .|++++||+|+..++.++.+
T Consensus 158 ~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 158 QKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR 237 (451)
T ss_pred HhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence 11112467777665555443221 12445555555556677787776553 49999999999998877764
Q ss_pred h
Q 022657 290 S 290 (294)
Q Consensus 290 ~ 290 (294)
+
T Consensus 238 ~ 238 (451)
T TIGR01173 238 R 238 (451)
T ss_pred H
Confidence 3
No 29
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.89 E-value=3.1e-21 Score=170.45 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=138.4
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe------CCC
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS------LPG 143 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v------~~~ 143 (294)
|||||+|.|+||+. |++++++|+|||.|+++++.+++.+++|+|+++.+. +.+.+.+++..+.+. .++
T Consensus 2 aiIpArG~Skr~~~---Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~---i~~~a~~~g~~v~~~r~~~l~~d~ 75 (222)
T TIGR03584 2 AIIPARGGSKRIPR---KNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEE---IAEVAKSYGASVPFLRPKELADDF 75 (222)
T ss_pred EEEccCCCCCCCCC---ccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHH---HHHHHHHcCCEeEEeChHHHcCCC
Confidence 79999999999984 999999999999999999998878999999887642 345556677655442 345
Q ss_pred CcHHHHHHHHHHhccc--CCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEccc-ce--EEeCCCCcEEEecc
Q 022657 144 KERQDSVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TI--KEANSESFVVRTLD 216 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~--~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~-~~--~~~~~~G~v~~~~~ 216 (294)
.++.+++.+|+..++. +.+.++++++|+||+++++|+++++.+... ++++.+++... +. +..+++|.+....+
T Consensus 76 ~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~ 155 (222)
T TIGR03584 76 TGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFP 155 (222)
T ss_pred CCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHheEECCCCcEEecCC
Confidence 6778999999988742 357899999999999999999999998753 45555555422 22 22334565433221
Q ss_pred ccceeeccCCceeChHHHHHHHHhhhhCC-cccccHHHHHHh---CCCCEEEEecC-CceecCCCHHHHHHHHHHHh
Q 022657 217 RKTLWEMQTPQVIKPDLLKKGFELVNREG-LEVTDDVSIVEH---LKHPVYITEGS-YTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 217 ~~~l~~~~tP~~f~~~~l~~~~~~~~~~g-~~~td~~~~l~~---~g~~v~~v~~~-~~~idVdTpeDL~~ae~~l~ 288 (294)
..... +.+.+...|. .+| ++++....+++. .+.++..++.+ ...+||||++||+.||.+++
T Consensus 156 ~~~~~--------~rQd~~~~y~---~nga~y~~~~~~~~~~~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~ 221 (222)
T TIGR03584 156 EHFNT--------RSQDLEEAYH---DAGQFYWGKSQAWLESGPIFSPHSIPIVLPRHLVQDIDTLEDWERAELLYK 221 (222)
T ss_pred CcccC--------CCCCCchhee---eCCeEEEEEHHHHHhcCCccCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence 11000 1122222232 233 444443333332 35677666655 56999999999999998874
No 30
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.89 E-value=1.4e-21 Score=167.16 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=119.3
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe--CCCCc
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKE 145 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v--~~~~~ 145 (294)
+.+||||||+|+|||. .||+|++++|+|||+|+++.+.. .+++|+|++++.. +.+. ...++..+... ....+
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~-~~~~--~~~~~~~~i~~~~~~~~g 74 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNP-ERYA--QAGFGLPVVPDALADFPG 74 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCH-HHHh--hccCCCcEEecCCCCCCC
Confidence 4689999999999985 48999999999999999999974 5899999987653 2221 11223222221 23457
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccC
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQT 225 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~t 225 (294)
+..|++.|+..++ .++++++++|+||++++.++++++.+...++.+++ +.. ...+ +
T Consensus 75 ~~~si~~al~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~-~~~------~~~~---------------~ 130 (186)
T TIGR02665 75 PLAGILAGLRWAG--TDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV-AHD------GGRW---------------H 130 (186)
T ss_pred CHHHHHHHHHhcC--CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE-Eec------CCcc---------------c
Confidence 7999999999875 57899999999999999999999987654443332 111 1112 4
Q ss_pred Cc--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHH
Q 022657 226 PQ--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLL 281 (294)
Q Consensus 226 P~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~ 281 (294)
|. .|+.+.+....+.....+. ....++...+.....++.. ..++|||||+||+
T Consensus 131 P~~~~~~~~~~~~l~~~~~~g~~---~~~~~l~~~~~~~i~~~~~~~~~~nint~~d~~ 186 (186)
T TIGR02665 131 PVFALWPVALAPDLEAFLAAGER---RVRRFYARHGAVAVDFSDSPDAFANLNTPEDLA 186 (186)
T ss_pred CEEEEEhHHHHHHHHHHHHcCCc---hHHHHHHHCCcEEEeCCCCCcccCCCCCHHHhC
Confidence 54 5666544433332222221 1234455544322223333 4478999999984
No 31
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.88 E-value=3.1e-21 Score=188.64 Aligned_cols=215 Identities=16% Similarity=0.225 Sum_probs=155.9
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC--C
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--G 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~--~ 143 (294)
..+.+||||||+|+||+..+||+|++++|+|||+|+++.+.++ ++++++|++++.. +.+.+.+......+.++.+ .
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~-~~i~~~~~~~~~~~~~~~~~~~ 80 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDR-ERVAPAVAELAPEVDIAVQDEQ 80 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCH-HHHHHHhhccCCccEEEeCCCC
Confidence 4578999999999999877899999999999999999999986 7899999999875 4555555543333434332 2
Q ss_pred CcHHHHHHHHHHhcccC-CCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE--EEEEcccc----eEEeCCCCcEEEecc
Q 022657 144 KERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKAT----IKEANSESFVVRTLD 216 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~-~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i--~~~~~~~~----~~~~~~~G~v~~~~~ 216 (294)
.+..++++.|+..+..+ .+.++++++|+||+++++++++++.+...++.+ +..+..++ ....+++|.|.++.+
T Consensus 81 ~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~E 160 (482)
T PRK14352 81 PGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVE 160 (482)
T ss_pred CCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEE
Confidence 34578999999988532 356888899999999999999999887665543 33333332 223456788888776
Q ss_pred ccce-------eec-cCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHH
Q 022657 217 RKTL-------WEM-QTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLI 282 (294)
Q Consensus 217 ~~~l-------~~~-~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ 282 (294)
+... ... ..++.|+.+.|.+++..... ..++++|....+...|.+++.++.+.+|.|+++++++.+
T Consensus 161 Kp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~ 238 (482)
T PRK14352 161 QKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQL 238 (482)
T ss_pred CCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHH
Confidence 5321 112 23788888877666554322 225678877777788888988888888999998888733
No 32
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.88 E-value=3.7e-21 Score=163.87 Aligned_cols=178 Identities=22% Similarity=0.312 Sum_probs=117.4
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe-CCCCcH
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKER 146 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v-~~~~~~ 146 (294)
+.+||||||+|+|||. ||+|++++|+|||+|+++++... +++|+||++++... ...++..+..- ..+.++
T Consensus 1 ~~~iILAgG~s~Rmg~--~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~-----~~~~~~~~v~~~~~~~G~ 71 (181)
T cd02503 1 ITGVILAGGKSRRMGG--DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER-----YALLGVPVIPDEPPGKGP 71 (181)
T ss_pred CcEEEECCCccccCCC--CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH-----HhhcCCcEeeCCCCCCCC
Confidence 3589999999999997 89999999999999999999874 89999999987422 12233322211 134567
Q ss_pred HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCC
Q 022657 147 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTP 226 (294)
Q Consensus 147 ~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP 226 (294)
..|++.|++.++ .+.++++.+|+||++++.++.+++.+ ..+..+ +++. . +|+.. ..|
T Consensus 72 ~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~-~~~~-------~-~g~~~-----------Pl~ 128 (181)
T cd02503 72 LAGILAALRAAP--ADWVLVLACDMPFLPPELLERLLAAA-EEGADA-VVPK-------S-GGRLQ-----------PLH 128 (181)
T ss_pred HHHHHHHHHhcC--CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE-EEEe-------e-CCcee-----------eEE
Confidence 899999999875 57889999999999999999999987 322222 1221 1 12211 012
Q ss_pred ceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHH
Q 022657 227 QVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDL 280 (294)
Q Consensus 227 ~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL 280 (294)
..|+.+.+....+....... ....++...+.....++.. ..++|||||+||
T Consensus 129 ~~~~~~~~~~l~~~~~~g~~---~~~~~l~~~~~~~v~~~~~~~~~~~dint~~d~ 181 (181)
T cd02503 129 ALYHKSLLPALEELLEAGER---RLRRLLEKLGVQYVEFEDERLDAFFNINTPEDL 181 (181)
T ss_pred EEEeHhHHHHHHHHHHcCCc---hHHHHHHHCCcEEEecccCCCCccccCCChhhC
Confidence 36776644443332211111 1234565555332223333 457899999996
No 33
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.88 E-value=3.8e-21 Score=186.11 Aligned_cols=218 Identities=16% Similarity=0.173 Sum_probs=152.1
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC--CCc
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKE 145 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~--~~~ 145 (294)
+.+||||||.|+||+..+||+|++++|+|||+|+++++.+. ++++++|++++.. +.+.+++.+++ .+.++.+ ..+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~-~~i~~~~~~~~-~i~~v~~~~~~G 78 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQA-EEVEQSLAHLP-GLEFVEQQPQLG 78 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCH-HHHHHHhcccC-CeEEEEeCCcCC
Confidence 57899999999999977899999999999999999999986 6899999999864 45566654432 3444432 234
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE--EEEEcccc----eEEeCCCCcEEEeccccc
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKAT----IKEANSESFVVRTLDRKT 219 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i--~~~~~~~~----~~~~~~~G~v~~~~~~~~ 219 (294)
..++++.++..+.+..+.++++++|+||++++.++++++.+.+.++.+ +..+..++ ....+++|+|.++.++..
T Consensus 79 ~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~ 158 (450)
T PRK14360 79 TGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRD 158 (450)
T ss_pred cHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCC
Confidence 578899999887533355788999999999999999999887665533 22333332 223566788887776543
Q ss_pred eeec--------cCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 220 LWEM--------QTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 220 l~~~--------~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
.... ...+.|+.+.+.+++..... ..++++|....+... ..+.+.....++++|||+||+.++.++
T Consensus 159 ~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~--~~~~v~~~~~~~~i~~~~dl~~~~~~l 236 (450)
T PRK14360 159 CTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPV--MAVEVEDYQEINGINDRKQLAQCEEIL 236 (450)
T ss_pred CChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhhc--eEEecCCHHHhhcCCCHHHHHHHHHHH
Confidence 2211 12467887777666654322 225666655555321 112234445688999999999999998
Q ss_pred hhh
Q 022657 288 NLS 290 (294)
Q Consensus 288 ~~~ 290 (294)
...
T Consensus 237 ~~~ 239 (450)
T PRK14360 237 QNR 239 (450)
T ss_pred HHH
Confidence 653
No 34
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.87 E-value=1.9e-20 Score=181.90 Aligned_cols=221 Identities=20% Similarity=0.200 Sum_probs=154.7
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC--CC
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GK 144 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~--~~ 144 (294)
++.|||||||.|+||+..+||+|++++|+|||+|+++++.++ ++++|+|++++.. +.+.+++.+.. .+.++.+ ..
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~-~~i~~~~~~~~-~i~~~~~~~~~ 79 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQA-EKVREHFAGDG-DVSFALQEEQL 79 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCH-HHHHHHhccCC-ceEEEecCCCC
Confidence 478999999999999977899999999999999999999986 7999999999874 44555554322 3545432 23
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEE--EEEcccc----eEEeCCCCcEEEecccc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL--GVPAKAT----IKEANSESFVVRTLDRK 218 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~--~~~~~~~----~~~~~~~G~v~~~~~~~ 218 (294)
+..++++.++..+++..+.++++++|+|+++++.++++++.+...++.++ ..+..++ ....+++|.+.++.++.
T Consensus 80 Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~ 159 (459)
T PRK14355 80 GTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEK 159 (459)
T ss_pred CHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcC
Confidence 45788999999886434678889999999999999999998876555432 2233222 22345667777766432
Q ss_pred c--------eeeccCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecCCc--eecCCCHHHHHHHH
Q 022657 219 T--------LWEMQTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYT--NIKVTTPDDLLIAE 284 (294)
Q Consensus 219 ~--------l~~~~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~~~--~idVdTpeDL~~ae 284 (294)
. .+....-+.|+.+.+.+++..... ..++++|....+...|.++..++.+.. |+||+||+||..++
T Consensus 160 ~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~ 239 (459)
T PRK14355 160 DATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAA 239 (459)
T ss_pred CCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHH
Confidence 1 111112345666555454443221 225566666666666777877776544 99999999999998
Q ss_pred HHHhhh
Q 022657 285 RILNLS 290 (294)
Q Consensus 285 ~~l~~~ 290 (294)
+++..+
T Consensus 240 ~~l~~~ 245 (459)
T PRK14355 240 RVLRRR 245 (459)
T ss_pred HHHHHH
Confidence 877654
No 35
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.86 E-value=9.1e-20 Score=162.33 Aligned_cols=215 Identities=19% Similarity=0.303 Sum_probs=140.6
Q ss_pred eEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeCC
Q 022657 69 SVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP 142 (294)
Q Consensus 69 ~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~~ 142 (294)
.+||||||.|+||+. .+||+|+|++|+|||+|+++.+..+ ++++|+||+++...+.+.+++.. ++.++.+..+
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ 80 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeC
Confidence 689999999999963 6899999999999999999999986 89999999886544556666542 3434544433
Q ss_pred --CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEccc----ceEEeCCCCcEEEe
Q 022657 143 --GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA----TIKEANSESFVVRT 214 (294)
Q Consensus 143 --~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~----~~~~~~~~G~v~~~ 214 (294)
..+..++++.+...++. +.++++.+|.|+.. ..+.++++.+... ++.+++.+..+ ....++++|.|..+
T Consensus 81 ~~~~G~~~al~~a~~~~~~--~~~lv~~gD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~ 157 (240)
T cd02538 81 PKPGGLAQAFIIGEEFIGD--DPVCLILGDNIFYG-QGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSI 157 (240)
T ss_pred CCCCCHHHHHHHHHHhcCC--CCEEEEECCEEEcc-HHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEE
Confidence 23468889999888862 44556679988654 5788888877543 34455555433 23345667788766
Q ss_pred ccccc----eeeccCCceeChHHHHHHHHhhhh--CC-cccccHHHHHHhCCC-CEEEEecCCceecCCCHHHHHHHHHH
Q 022657 215 LDRKT----LWEMQTPQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 215 ~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~--~g-~~~td~~~~l~~~g~-~v~~v~~~~~~idVdTpeDL~~ae~~ 286 (294)
.++.. -+....-++|+.+.+ +.+..... .+ ++++|....+...|. .++.+.....|+||+||+||..++++
T Consensus 158 ~ekp~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~ 236 (240)
T cd02538 158 EEKPKKPKSNYAVTGLYFYDNDVF-EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNF 236 (240)
T ss_pred EECCCCCCCCeEEEEEEEECHHHH-HHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHH
Confidence 55421 111112356666544 34432211 12 444554444444442 33444434789999999999999998
Q ss_pred Hh
Q 022657 287 LN 288 (294)
Q Consensus 287 l~ 288 (294)
++
T Consensus 237 ~~ 238 (240)
T cd02538 237 VQ 238 (240)
T ss_pred Hh
Confidence 75
No 36
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=9.2e-21 Score=164.92 Aligned_cols=218 Identities=18% Similarity=0.228 Sum_probs=141.1
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEc-CCCchHHHHHHHhhcCCceEEeCC--
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC-DPSYSDIFEETKEKINVDLKFSLP-- 142 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~-~~~~~~~~~~~~~~~~~~i~~v~~-- 142 (294)
+-+.|||||||.|||||.++||+|+.++|+++|+|++++|.+. ++++++||| ++.. +.+++.+.+++.+..++.+
T Consensus 2 ~~~kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~-~lve~~l~~~~~~~~iv~N~~ 79 (239)
T COG1213 2 HPMKAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRA-DLVEEFLKKYPFNAKIVINSD 79 (239)
T ss_pred CceeEEEEecccccccCCCCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchH-HHHHHHHhcCCcceEEEeCCC
Confidence 3468999999999999988999999999999999999999986 799999999 6664 7888888888766666632
Q ss_pred --CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEE----cccceEEeCCCCcEEEecc
Q 022657 143 --GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP----AKATIKEANSESFVVRTLD 216 (294)
Q Consensus 143 --~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~----~~~~~~~~~~~G~v~~~~~ 216 (294)
.++...|++.|...++. + ++++++|. +.++..+++++++. ..+..+...| ..+..+.-.++|++.++-.
T Consensus 80 y~ktN~~~Sl~~akd~~~~--~-fii~~sD~-vye~~~~e~l~~a~-~~~li~d~~~~~~~~~ea~kv~~e~G~i~~igK 154 (239)
T COG1213 80 YEKTNTGYSLLLAKDYMDG--R-FILVMSDH-VYEPSILERLLEAP-GEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGK 154 (239)
T ss_pred cccCCceeEEeeehhhhcC--c-EEEEeCCE-eecHHHHHHHHhCc-CCcEEEeccccccccCceeEEEecCCEEehhcC
Confidence 22347889999998873 3 55667885 57899999999864 1111111111 1222333345677654432
Q ss_pred ccceeecc--CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEec---CCceecCCCHHHHHHHHHHHhhhh
Q 022657 217 RKTLWEMQ--TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG---SYTNIKVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 217 ~~~l~~~~--tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~---~~~~idVdTpeDL~~ae~~l~~~~ 291 (294)
.-+-+..+ .-..++...+...++...+.. ..+...+....+.+...+.. ...|+||||||||++|++.+....
T Consensus 155 ~l~e~~~e~iGi~~l~~~i~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 155 DLTEYDGEDIGIFILSDSIFEDTYELLVERS--EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred CcccccceeeeeEEechHHHHHHHHHHhhhh--hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 21111100 112334444444444332211 11122333444555444332 245999999999999999887654
Q ss_pred c
Q 022657 292 E 292 (294)
Q Consensus 292 ~ 292 (294)
.
T Consensus 233 ~ 233 (239)
T COG1213 233 K 233 (239)
T ss_pred H
Confidence 4
No 37
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.86 E-value=1.1e-19 Score=166.86 Aligned_cols=218 Identities=17% Similarity=0.258 Sum_probs=147.1
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh---hcCCceEEe
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFS 140 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~---~~~~~i~~v 140 (294)
+++|||||||.||||. ..+||+|+||+|||||+|.++.+..+ ++++|+|++++...+.++++++ +++.++.++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~ 81 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYK 81 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCccccCceeEEE
Confidence 4789999999999996 36899999999999999999999986 8999998877654456666654 345566666
Q ss_pred CC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccc----eEEeCCCCcEE
Q 022657 141 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVV 212 (294)
Q Consensus 141 ~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~----~~~~~~~G~v~ 212 (294)
.+ ..+.++++..|...+.+ .++++ +.+|..|. ...+..+++.+... ++.+.++++.++ +..++++|.|.
T Consensus 82 ~q~~~~Gta~Al~~a~~~i~~-~~~~l-v~gD~i~~-~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~ 158 (292)
T PRK15480 82 VQPSPDGLAQAFIIGEEFIGG-DDCAL-VLGDNIFY-GHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAI 158 (292)
T ss_pred ECCCCCCHHHHHHHHHHHhCC-CCEEE-EECCeeee-ccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEE
Confidence 43 23568889999888863 34444 45887764 45788888877543 444555555443 34456678877
Q ss_pred Eeccccc----eeeccCCceeChHHHHHHHHhhh--hCC-cccccHHHHHHhCCCCEEEEecCC-ceecCCCHHHHHHHH
Q 022657 213 RTLDRKT----LWEMQTPQVIKPDLLKKGFELVN--REG-LEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAE 284 (294)
Q Consensus 213 ~~~~~~~----l~~~~tP~~f~~~~l~~~~~~~~--~~g-~~~td~~~~l~~~g~~v~~v~~~~-~~idVdTpeDL~~ae 284 (294)
.+.++.. -+....-+.|+.+.+ +...... ..| ++++|....+...|........+. .|+|++||+||..|+
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~-~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~ 237 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVV-EMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEAS 237 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHH-HHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHH
Confidence 6655421 112222345665533 3333221 123 677876666666664444445555 599999999999999
Q ss_pred HHHhh
Q 022657 285 RILNL 289 (294)
Q Consensus 285 ~~l~~ 289 (294)
++++.
T Consensus 238 ~~~~~ 242 (292)
T PRK15480 238 NFIAT 242 (292)
T ss_pred HHHHH
Confidence 88873
No 38
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.86 E-value=5.4e-20 Score=159.52 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=119.7
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCC-eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEE--eCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLP 142 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~G-kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~--v~~ 142 (294)
+++.+||||||+|+|||. +|+|++++| +|||+|+++.+... +++|+||+++. .+. ....+.. ..+
T Consensus 7 ~~i~~vILAgG~s~RmG~--~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~---~~~-----~~~~~v~d~~~~ 74 (196)
T PRK00560 7 DNIPCVILAGGKSSRMGE--NKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDK---KFE-----FNAPFLLEKESD 74 (196)
T ss_pred cCceEEEECCcccccCCC--CceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECch---hcc-----cCCcEEecCCCC
Confidence 678999999999999986 799999999 99999999999863 79999998862 111 1111111 112
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceee
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE 222 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~ 222 (294)
..++..++..++...+ .++++++.+|+|+++++++++++.. .+..++ ++. .+|.
T Consensus 75 ~~gpl~gi~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~---~~~~~~-~~~--------~~~~------------ 128 (196)
T PRK00560 75 LFSPLFGIINAFLTLQ--TPEIFFISVDTPFVSFESIKKLCGK---ENFSVT-YAK--------SPTK------------ 128 (196)
T ss_pred CCCcHHHHHHHHHhcC--CCeEEEEecCcCcCCHHHHHHHHhc---CCCCEE-EEc--------cCCc------------
Confidence 2345667777776544 5789999999999999999998542 222221 221 1121
Q ss_pred ccCCc--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhh
Q 022657 223 MQTPQ--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 223 ~~tP~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~ 290 (294)
.+|. .|+.+.+....+...+.+. ....+++..+.....+..+..++||||||||+.+++.+..+
T Consensus 129 -~~Pl~al~~~~~~~~l~~~l~~~~~---~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~~~~ 194 (196)
T PRK00560 129 -EHYLISLWHQSLLNALIYALKTQNY---RLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQILKSR 194 (196)
T ss_pred -eeeeEEEEcHHHHHHHHHHHHhCCc---cHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHHHHh
Confidence 1455 7877655554433322222 12356666553332233334578999999999998877543
No 39
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.85 E-value=1.2e-19 Score=160.94 Aligned_cols=188 Identities=21% Similarity=0.253 Sum_probs=120.2
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCch-HHHHHHHhhcCCceEEeCCCCc-HH
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKE-RQ 147 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~-~~~~~~~~~~~~~i~~v~~~~~-~~ 147 (294)
|||||||.|+||+. |+|++++|+|||+|+++++...+.+++|+||+++... +.+.+.+..++ +.++.++.. ..
T Consensus 2 aiIlA~G~S~R~~~---K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~--v~~v~~~~~~~l 76 (233)
T cd02518 2 AIIQARMGSTRLPG---KVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLG--VKVFRGSEEDVL 76 (233)
T ss_pred EEEeeCCCCCCCCC---CcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcC--CeEEECCchhHH
Confidence 79999999999973 9999999999999999999986458999999997641 33444444444 344443332 22
Q ss_pred HHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCCc
Q 022657 148 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 227 (294)
Q Consensus 148 ~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP~ 227 (294)
.....+++.. +.++++++++|+||+++++++++++.+...+..+++.. ...| +|.
T Consensus 77 ~~~~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~--------~~~g---------------~Pv 131 (233)
T cd02518 77 GRYYQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNT--------LPRT---------------YPD 131 (233)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecC--------CCCC---------------CCC
Confidence 2222333322 35789999999999999999999998865544333211 0123 344
Q ss_pred -----eeChHHHHHHHHhhhhCCcccccHH-HHHHhCCCCEEE--EecCC-----ceecCCCHHHHHHHHHHHhh
Q 022657 228 -----VIKPDLLKKGFELVNREGLEVTDDV-SIVEHLKHPVYI--TEGSY-----TNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 228 -----~f~~~~l~~~~~~~~~~g~~~td~~-~~l~~~g~~v~~--v~~~~-----~~idVdTpeDL~~ae~~l~~ 289 (294)
.|+...+.+..+...+.|.. ... .++.+....+.. +.... ..+||||||||+.++.+.+.
T Consensus 132 ~~~~~~~~~~~~~~l~~~~gd~g~r--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~~~~~~ 204 (233)
T cd02518 132 GLDVEVFTRDALERAAAEADDPYER--EHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIKEIYEA 204 (233)
T ss_pred ceEEEEEEHHHHHHHHHhCCChhhh--cCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHHHHHHH
Confidence 56655555555443333321 000 123444433433 33222 26899999999999987753
No 40
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.85 E-value=8.7e-20 Score=172.52 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=124.9
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEE--eCCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPG 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~--v~~~ 143 (294)
.++.+||||||+|+||++ .||+|++++|+|||+|+++++.. .+++|+|+++... +.+...+.. ..+.. ..+.
T Consensus 4 ~~i~~VILAgG~s~Rmgg-~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~--~~~i~d~~~g~ 77 (366)
T PRK14489 4 SQIAGVILAGGLSRRMNG-RDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPG--LPVYPDILPGF 77 (366)
T ss_pred CCceEEEEcCCcccCCCC-CCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccC--CcEEecCCCCC
Confidence 358899999999999963 48999999999999999999975 5899999777553 333332211 12211 1233
Q ss_pred CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeec
Q 022657 144 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEM 223 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~ 223 (294)
.++..|++.|++.++ .++++++++|+|+++++.++++++.+...++.++ ++.. +..|
T Consensus 78 ~G~~~si~~gl~~~~--~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v-~~~~------g~~g-------------- 134 (366)
T PRK14489 78 QGPLSGILAGLEHAD--SEYLFVVACDTPFLPENLVKRLSKALAIEGADIA-VPHD------GERA-------------- 134 (366)
T ss_pred CChHHHHHHHHHhcC--CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEE-EEec------CCCc--------------
Confidence 578899999999875 5778999999999999999999998655444332 2211 1112
Q ss_pred cCCc--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHHHHHHHHh
Q 022657 224 QTPQ--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 224 ~tP~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~~ae~~l~ 288 (294)
+|. .|+.+.+....+ ..+.|.. ....++...+.....++.. ..++|||||+||+.+++...
T Consensus 135 -~Pl~aiy~~~~~~~l~~-~l~~G~~--~l~~~l~~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~~~ 198 (366)
T PRK14489 135 -HPLFALYHRSCLPALRR-YLAEGER--RLFDFFQRQRVRYVDLSTQKDAFFNVNTPEDLEQLRAIPD 198 (366)
T ss_pred -eeeEEEEcHHHHHHHHH-HHHhCCc--cHHHHHHhCCcEEEeccCCccccccCCCHHHHHHHhhhhh
Confidence 465 677665444333 3333321 1112333333222222222 34789999999999987754
No 41
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.85 E-value=1.3e-19 Score=177.20 Aligned_cols=223 Identities=17% Similarity=0.194 Sum_probs=152.6
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP- 142 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~- 142 (294)
.+|++.|||||||+|+||+...||+|++++|+|||+|+++++.++ ++++|+|++++.. +.++++++..+ +.++.+
T Consensus 4 ~~~~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~-~~i~~~~~~~~--i~~v~~~ 79 (481)
T PRK14358 4 QTRPLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGA-EQVEAALQGSG--VAFARQE 79 (481)
T ss_pred ccCCceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCH-HHHHHHhccCC--cEEecCC
Confidence 347899999999999999877899999999999999999999986 7999999999874 55666654333 455543
Q ss_pred -CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE--EEEEccc----ceEEeCCCCcEEEec
Q 022657 143 -GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKA----TIKEANSESFVVRTL 215 (294)
Q Consensus 143 -~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i--~~~~~~~----~~~~~~~~G~v~~~~ 215 (294)
..+..++++.|++.+....+.++++++|+||+++..++++++.+.+.++.+ ++.+..+ .....+++|.|.++.
T Consensus 80 ~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~ 159 (481)
T PRK14358 80 QQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIV 159 (481)
T ss_pred CcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEE
Confidence 234588899999888532233677899999999999999999887666543 3333322 223346677887766
Q ss_pred cccce--------eeccCCceeChHHHHHHHHhhh---hC-CcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHH
Q 022657 216 DRKTL--------WEMQTPQVIKPDLLKKGFELVN---RE-GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLL 281 (294)
Q Consensus 216 ~~~~l--------~~~~tP~~f~~~~l~~~~~~~~---~~-g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~ 281 (294)
++... .....-++|+.+. .+.++... .. .++++|....+...|.++..+... ..++.++++++|.
T Consensus 160 Ek~~~~~~~~~~~~~n~Giyi~~~~~-~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~ 238 (481)
T PRK14358 160 EQKDATDAEKAIGEFNSGVYVFDARA-PELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLA 238 (481)
T ss_pred ECCCCChhHhhCCeEEEEEEEEchHH-HHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHH
Confidence 53210 0111234566432 23333221 12 256777666666667677665543 4588899999888
Q ss_pred HHHHHHhhhh
Q 022657 282 IAERILNLSS 291 (294)
Q Consensus 282 ~ae~~l~~~~ 291 (294)
.++++++.+.
T Consensus 239 ~~~~~l~~~~ 248 (481)
T PRK14358 239 QLEATLRRRI 248 (481)
T ss_pred HHHHHHHHHH
Confidence 8877776544
No 42
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.85 E-value=2.5e-19 Score=164.01 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=142.8
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeCC
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP 142 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~~ 142 (294)
+|||||||.||||. ..+||+|+||+|+|||+|+++.+..+ ++++|+|++++...+.+.+++.. ++.++.++.+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccccccCceEEEEEc
Confidence 48999999999996 36899999999999999999999986 79999988876544566666542 4445666543
Q ss_pred --CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccc----eEEeCCCCcEEEe
Q 022657 143 --GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRT 214 (294)
Q Consensus 143 --~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~----~~~~~~~G~v~~~ 214 (294)
..+.++++..|...+.+ .++++ +.+|.++. ...+.++++.+... ++.+.+.++.++ +...+++|.|..+
T Consensus 80 ~~~~Gta~al~~a~~~l~~-~~~~l-i~gD~i~~-~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i 156 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGG-DPSAL-VLGDNIFY-GHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISI 156 (286)
T ss_pred cCCCCHHHHHHHHHHHhCC-CCEEE-EECCEecc-ccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEE
Confidence 34568899999999863 34444 45888874 46788888876543 445555665443 3445667888766
Q ss_pred ccccc----eeeccCCceeChHHHHHHHHhhhh--CC-cccccHHHHHHhCCC-CEEEEecCC-ceecCCCHHHHHHHHH
Q 022657 215 LDRKT----LWEMQTPQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKH-PVYITEGSY-TNIKVTTPDDLLIAER 285 (294)
Q Consensus 215 ~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~--~g-~~~td~~~~l~~~g~-~v~~v~~~~-~~idVdTpeDL~~ae~ 285 (294)
.++.. -+....-+.|+.+. .+.+..... .| ++++|....+...|. .+... ... .|+||+||+||..|.+
T Consensus 157 ~EKp~~~~s~~~~~GiYi~~~~i-~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~-~~g~~W~DiGt~~~l~~A~~ 234 (286)
T TIGR01207 157 EEKPAQPKSNYAVTGLYFYDNRV-VEIARQLKPSARGELEITDLNRVYLEEGRLSVELL-GRGYAWLDTGTHDSLLEASN 234 (286)
T ss_pred EECCCCCCCCEEEEEEEEEchHH-HHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEe-cCCCEEEeCCCHHHHHHHHH
Confidence 55421 11112234566553 333332211 23 666776555555553 23333 244 4999999999999998
Q ss_pred HHhh
Q 022657 286 ILNL 289 (294)
Q Consensus 286 ~l~~ 289 (294)
+++.
T Consensus 235 ~~~~ 238 (286)
T TIGR01207 235 FIQT 238 (286)
T ss_pred HHHH
Confidence 8864
No 43
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.85 E-value=3.1e-19 Score=164.20 Aligned_cols=213 Identities=16% Similarity=0.184 Sum_probs=139.1
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-----------
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------- 132 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----------- 132 (294)
+++|||||||.||||. ..+||+|+||+|+|+|+|+++.+..+ ++++|+|++++.. +.+.++...
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~ 80 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASK-NAVENHFDTSYELESLLEQR 80 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCh-HHHHHHHhchHHHHHHHHHh
Confidence 5789999999999997 47899999999999999999999986 8999999999975 445554421
Q ss_pred --------------cCCceEEeCCC--CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCH-------HHHHHHHHHHHhc
Q 022657 133 --------------INVDLKFSLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRV 189 (294)
Q Consensus 133 --------------~~~~i~~v~~~--~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~-------~~i~~ll~~~~~~ 189 (294)
++.++.++.+. .+.++++++|...+.+ .+++ ++.+|. +++. -.+.++++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~-~~fl-vv~gD~-l~~~~~~~~~~~~l~~li~~~~~~ 157 (297)
T TIGR01105 81 VKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD-NPFV-VVLPDI-IIDDATADPLRYNLAAMIARFNET 157 (297)
T ss_pred cchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCC-CCEE-EEECCe-eccccccccchhHHHHHHHHHHHh
Confidence 23346665433 3568999999999863 3444 445774 4432 4788898877655
Q ss_pred Cc-EEEEEEcc-cc----eEEe----CCCCcE---EEeccccc-------eeeccCCceeChHHHHHHHHhhhh--CC-c
Q 022657 190 GA-AVLGVPAK-AT----IKEA----NSESFV---VRTLDRKT-------LWEMQTPQVIKPDLLKKGFELVNR--EG-L 246 (294)
Q Consensus 190 ~~-~i~~~~~~-~~----~~~~----~~~G~v---~~~~~~~~-------l~~~~tP~~f~~~~l~~~~~~~~~--~g-~ 246 (294)
++ ++++.+.. +. +... +++|.+ .++.++.. -+....-++|+.+.+. .++.... .| +
T Consensus 158 ~~~~~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 236 (297)
T TIGR01105 158 GRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWA-ELERTEPGAWGRI 236 (297)
T ss_pred CCcEEEEEEcCCCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHH-HHhcCCCCCCCee
Confidence 44 34444432 22 2233 234643 45544321 0111223566765433 3433211 12 5
Q ss_pred ccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHH
Q 022657 247 EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 247 ~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~ 286 (294)
+++|....+.. +.+++.+..+..|+||+||+||..|..-
T Consensus 237 ~ltd~i~~l~~-~~~v~~~~~~g~w~DiG~p~~~~~a~~~ 275 (297)
T TIGR01105 237 QLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVK 275 (297)
T ss_pred eHHHHHHHHHh-cCCEEEEEeccEEECCCCHHHHHHHHHH
Confidence 67776666655 3477777777789999999999998543
No 44
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.84 E-value=1.7e-19 Score=157.66 Aligned_cols=204 Identities=15% Similarity=0.208 Sum_probs=132.1
Q ss_pred EEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc---CCceEEeC--
Q 022657 70 VILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSL-- 141 (294)
Q Consensus 70 aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v~-- 141 (294)
|||||||.|+||+. ..||+|++++|+|||+|+++.+.+. ++++|+|++++.. +.+.+++... +..+.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~ 78 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLA-EQIEEYFGDGYRGGIRIYYVIEP 78 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCH-HHHHHHHcCccccCceEEEEECC
Confidence 69999999999973 5799999999999999999999986 6999999999864 4455555431 33343432
Q ss_pred CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEccc----ceEEeCCCCcEEEec
Q 022657 142 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKA----TIKEANSESFVVRTL 215 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~----~~~~~~~~G~v~~~~ 215 (294)
...+..+++..|++.+. .+.++++++|+++ ...+.++++.+.+.+ +.+++.+..+ ....++++|.|..+.
T Consensus 79 ~~~G~~~~l~~a~~~~~--~~~~lv~~~D~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ 154 (223)
T cd06915 79 EPLGTGGAIKNALPKLP--EDQFLVLNGDTYF--DVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFV 154 (223)
T ss_pred CCCcchHHHHHHHhhcC--CCCEEEEECCccc--CCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEE
Confidence 33456888999999884 3567788899876 356888888775543 3344444322 123446667777665
Q ss_pred cccc----eeeccCCceeChHHHHHHHHhhhhCCc-ccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 216 DRKT----LWEMQTPQVIKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 216 ~~~~----l~~~~tP~~f~~~~l~~~~~~~~~~g~-~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
++.. .+....-+.|+.+.+... . ..+. ..++....+...+ ++..++.+..|+|||||+||..|+
T Consensus 155 ek~~~~~~~~~~~Giy~~~~~~l~~~-~---~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 155 EKGPGAAPGLINGGVYLLRKEILAEI-P---ADAFSLEADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred eCCCCCCCCcEEEEEEEECHHHHhhC-C---ccCCChHHHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 4311 111112345665544321 1 1111 1122222223334 788877777899999999999873
No 45
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.84 E-value=2e-19 Score=160.24 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=145.7
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc---CCceEEeC
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSL 141 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v~ 141 (294)
+|||||||.||||. ..+||+|++++|+ |||+|+++.+..+ ++++|++|+.....+.+.++++.. +.++.++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeecccccccccccccccccccceeee
Confidence 58999999999996 5689999999999 9999999999985 899965555543346677776543 22455543
Q ss_pred --CCCcHHHHHHHHHHhcccC--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCc----EEEEEEccc----ceEEeCCCC
Q 022657 142 --PGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALRVGA----AVLGVPAKA----TIKEANSES 209 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~--~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~----~i~~~~~~~----~~~~~~~~G 209 (294)
...+.+++++.+...+..+ .+.++++.+|..+- ..+..+++.+...++ .+...+..+ ++...+++|
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 157 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFD--DDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG 157 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEES--TTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEecccccc--chhhhHHHhhhccccccccccccccccccccceeeeeccce
Confidence 3456799999999988743 23578888886433 388999998876544 223334332 345567778
Q ss_pred cEEEeccccce-----eeccCCceeChHHHHHHHHhhh---hCCcccccHHHHHHhCCCCEEEEecCC--ceecCCCHHH
Q 022657 210 FVVRTLDRKTL-----WEMQTPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDD 279 (294)
Q Consensus 210 ~v~~~~~~~~l-----~~~~tP~~f~~~~l~~~~~~~~---~~g~~~td~~~~l~~~g~~v~~v~~~~--~~idVdTpeD 279 (294)
+|.++.++... +....-+.|..+.+....+... .....++|....+...+..+..+..+. .|+||+||+|
T Consensus 158 ~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~ 237 (248)
T PF00483_consen 158 RVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPED 237 (248)
T ss_dssp EEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHH
T ss_pred eEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHH
Confidence 88888765221 2222235666655444433111 122455555555666676666656555 6999999999
Q ss_pred HHHHHHHHhh
Q 022657 280 LLIAERILNL 289 (294)
Q Consensus 280 L~~ae~~l~~ 289 (294)
|..|++.+.+
T Consensus 238 ~~~a~~~~~~ 247 (248)
T PF00483_consen 238 YLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 46
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.84 E-value=3e-19 Score=169.08 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=121.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe-CCCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v-~~~~ 144 (294)
+++.+||||||+|+|||. +|+|++++|+|||+|+++++.. .+++|+|+++......+ ..++..+..- ..+.
T Consensus 173 ~~i~~iILAGG~SsRmG~--~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~~~~----~~~~v~~i~d~~~~~ 244 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMGS--DKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQAEQY----RSFGIPLITDSYLDI 244 (369)
T ss_pred CCceEEEEcCCccccCCC--CcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchhhHH----hhcCCcEEeCCCCCC
Confidence 568899999999999996 7999999999999999999985 47889998876532222 2233322211 1345
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
++..++..|++... .+.++++.||+||++++.++.+++.......++.. ....+|+... +
T Consensus 245 Gpl~gi~~al~~~~--~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~--------~~~~~g~p~p------l---- 304 (369)
T PRK14490 245 GPLGGLLSAQRHHP--DAAWLVVACDLPFLDEATLQQLVEGRNPFRFATAF--------RHPDSGRPEP------L---- 304 (369)
T ss_pred CcHHHHHHHHHhCC--CCcEEEEeCCcCCCCHHHHHHHHHhccCCCceEEE--------EcCCCCceEe------E----
Confidence 67889999988765 45677889999999999999999864222111111 1112343210 0
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEec--CCceecCCCHHHHHHHHHHHhhhh
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~--~~~~idVdTpeDL~~ae~~l~~~~ 291 (294)
...|....+....... ..|.. ....+++... +..++. ...++|||||+||+.+++.+....
T Consensus 305 -~~~y~~~~~~~l~~~~-~~gd~--~~~~~l~~~~--~~~v~~~~~~~f~NINTpeDl~~~~~~~~~~~ 367 (369)
T PRK14490 305 -CAIYEPKSRLRLLLRH-AAGNN--SLRSFLATSR--IEELEPTDPEALQNINDPEEMDRAERALSTTK 367 (369)
T ss_pred -EEeecHHHHHHHHHHH-HhCCc--cHHHHHhhCC--eEEEcCCCchhcCCCCCHHHHHHHHHHHhhcC
Confidence 1234434333332211 11211 1234555443 333333 345789999999999998886543
No 47
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.83 E-value=2.2e-19 Score=174.34 Aligned_cols=216 Identities=16% Similarity=0.191 Sum_probs=147.1
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP- 142 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~- 142 (294)
++|++.+||||||.|+||+..+||+|++++|+|||+|+++.+... ++++|+|++++.. +.+++.+... ++.++.+
T Consensus 2 ~~~~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~-~~i~~~~~~~--~~~~i~~~ 77 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGG-DLLKQTLADE--PLNWVLQA 77 (456)
T ss_pred CCCCceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCH-HHHHHhhccC--CcEEEECC
Confidence 557799999999999999877899999999999999999999876 7999999999864 4555555432 3444432
Q ss_pred -CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccc--eE-EeCCCCcEEEecccc
Q 022657 143 -GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--IK-EANSESFVVRTLDRK 218 (294)
Q Consensus 143 -~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~--~~-~~~~~G~v~~~~~~~ 218 (294)
..+...+++.++..+.+ .+.++++++|+|+++++.++++++...+.+.+++.++..++ +- ..+++|+|.++.++.
T Consensus 78 ~~~Gt~~al~~a~~~l~~-~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~~~g~V~~~~EKp 156 (456)
T PRK09451 78 EQLGTGHAMQQAAPFFAD-DEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQK 156 (456)
T ss_pred CCCCcHHHHHHHHHhhcc-CCcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEecCCeEEEEEECC
Confidence 23468889999988753 36788899999999999999999876555545555554433 11 123467787776642
Q ss_pred ce--------eeccCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEec--------CCceecCCCHH
Q 022657 219 TL--------WEMQTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--------SYTNIKVTTPD 278 (294)
Q Consensus 219 ~l--------~~~~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~--------~~~~idVdTpe 278 (294)
.. .....-+.|+.+.+.+.++.... ..++++|....+...|.++..+.. -..|.|+++++
T Consensus 157 ~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~ 236 (456)
T PRK09451 157 DATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLE 236 (456)
T ss_pred CCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHH
Confidence 11 01112256676666665543321 225566655555566777776632 12356777787
Q ss_pred HHHHHH
Q 022657 279 DLLIAE 284 (294)
Q Consensus 279 DL~~ae 284 (294)
+|..++
T Consensus 237 ~y~~~~ 242 (456)
T PRK09451 237 RVYQAE 242 (456)
T ss_pred HHHHHH
Confidence 777653
No 48
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.83 E-value=8.3e-19 Score=164.88 Aligned_cols=217 Identities=15% Similarity=0.235 Sum_probs=147.4
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeCC
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP 142 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~~ 142 (294)
+|||||||.|+||+ ..+||+|+|++|+|||+|+++.+.+. ++++|+|++++...+.+.++++. ++.++.++.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEEC
Confidence 48999999999996 36899999999999999999999986 79999999999333556666643 3334555432
Q ss_pred --CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc----eEEeCCCCcEEEe
Q 022657 143 --GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRT 214 (294)
Q Consensus 143 --~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~----~~~~~~~G~v~~~ 214 (294)
..+..++++.|+..+.+ .+ +++..+|.++ ...+.++++.+.+.++ .+++.+..+. +...++++.|.++
T Consensus 80 ~~~~G~~~al~~a~~~l~~-~~-~li~~gD~~~--~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGD-DD-FVVYLGDNLI--QDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhcCC-CC-EEEEECCeec--CccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEE
Confidence 34568999999998853 24 4566799876 4678889988765443 4444444332 2334445567666
Q ss_pred ccccc----eeeccCCceeChHHHHHHHHhhhh---CCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 215 LDRKT----LWEMQTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 215 ~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~---~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
.++.. -.....-+.|+. .+.+.+..... ..+++++....+...|.+++.+..+..|.|||||+||..|++.+
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~-~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~l 234 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRP-LIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLI 234 (353)
T ss_pred EECCCCCCccceEEEEEEECH-HHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHH
Confidence 54321 111112345665 33344432221 22455655555556677888888888899999999999999988
Q ss_pred hhhh
Q 022657 288 NLSS 291 (294)
Q Consensus 288 ~~~~ 291 (294)
..+.
T Consensus 235 l~~~ 238 (353)
T TIGR01208 235 LDEV 238 (353)
T ss_pred Hhhc
Confidence 7654
No 49
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.83 E-value=4.4e-19 Score=153.09 Aligned_cols=185 Identities=21% Similarity=0.300 Sum_probs=121.7
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe-CCCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v-~~~~ 144 (294)
+++.+||||||+|+|| . +|.|++++|+||++|++++|+. .++.++|+.... .+. ....+.++..- .++.
T Consensus 3 ~~~~~vILAGG~srRm-~--dK~l~~~~g~~lie~v~~~L~~--~~~~vvi~~~~~-~~~----~~~~g~~vv~D~~~~~ 72 (192)
T COG0746 3 TPMTGVILAGGKSRRM-R--DKALLPLNGRPLIEHVIDRLRP--QVDVVVISANRN-QGR----YAEFGLPVVPDELPGF 72 (192)
T ss_pred CCceEEEecCCccccc-c--ccccceeCCeEHHHHHHHHhcc--cCCEEEEeCCCc-hhh----hhccCCceeecCCCCC
Confidence 5688999999999999 4 6999999999999999999986 466444444433 222 12233333221 2333
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
++..+++.|++... .++++++.||+||++++.+..+++.+...++.++. + -++|++.. +
T Consensus 73 GPL~Gi~~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~-~--------~~~g~~~P------l---- 131 (192)
T COG0746 73 GPLAGILAALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTGAAIVP-A--------HDDGRLEP------L---- 131 (192)
T ss_pred CCHHHHHHHHHhCC--CCeEEEEecCCCCCCHHHHHHHHHhhcccCCcEEE-e--------CCCCceee------E----
Confidence 78999999999987 68999999999999999999999998765533321 1 12454321 1
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCC--ceecCCCHHHHHHHHH
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAER 285 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~--~~idVdTpeDL~~ae~ 285 (294)
...|+ ..+...++.....|-. ....+++..+.....++... .+++||||+||..++.
T Consensus 132 -~aly~-~~l~~~l~~~l~~g~~--~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~ 190 (192)
T COG0746 132 -FALYH-RALLPALEEYLAKGER--RLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARARE 190 (192)
T ss_pred -EEEeh-HHHHHHHHHHHHhCCc--cHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhc
Confidence 12343 3334433332222211 12245666665544444444 6899999999998865
No 50
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.83 E-value=1.3e-18 Score=154.03 Aligned_cols=214 Identities=19% Similarity=0.300 Sum_probs=141.0
Q ss_pred eeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeC
Q 022657 68 VSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~ 141 (294)
+.|||||||.|+||+ ...||+|++++|+|||+|+++.+.+. ++++|+|++++.. +.+.+++++ ++.++.++.
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~i~~~~ 78 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTG-EEIKEALGDGSRFGVRITYIL 78 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCH-HHHHHHhcchhhcCCeEEEEE
Confidence 368999999999996 36899999999999999999999986 7999999999864 556666543 234455553
Q ss_pred CC--CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEcccc----eEEeCCCCcEEE
Q 022657 142 PG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVR 213 (294)
Q Consensus 142 ~~--~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~~----~~~~~~~G~v~~ 213 (294)
+. .+..++++.|+..+. +.+ +++..+|..+ . ..+.++++.+...+ +.+++.+..+. ....+ +|.|.+
T Consensus 79 ~~~~~g~~~sl~~a~~~i~-~~~-~li~~~D~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~ 153 (236)
T cd04189 79 QEEPLGLAHAVLAARDFLG-DEP-FVVYLGDNLI-Q-EGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVR 153 (236)
T ss_pred CCCCCChHHHHHHHHHhcC-CCC-EEEEECCeec-C-cCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEc-CCeEEE
Confidence 32 346889999999885 234 4556788765 3 45777887765443 33444454322 22334 456666
Q ss_pred eccccc----eeeccCCceeChHHHHHHHHhhhh--C-CcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHH
Q 022657 214 TLDRKT----LWEMQTPQVIKPDLLKKGFELVNR--E-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 214 ~~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~--~-g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~ 286 (294)
+.++.. .+....-+.|+.+.+. .+..... . .+++++....+...|.++..++.+..|+|||||+||..++..
T Consensus 154 ~~ek~~~~~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~ 232 (236)
T cd04189 154 LVEKPKEPPSNLALVGVYAFTPAIFD-AISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRL 232 (236)
T ss_pred EEECCCCCCCCEEEEEEEEeCHHHHH-HHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHH
Confidence 554321 1111122345544332 3322111 1 245566555566677788888877789999999999999987
Q ss_pred Hhh
Q 022657 287 LNL 289 (294)
Q Consensus 287 l~~ 289 (294)
+..
T Consensus 233 ~l~ 235 (236)
T cd04189 233 LLD 235 (236)
T ss_pred HHh
Confidence 643
No 51
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=5.7e-19 Score=151.09 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=149.3
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC----
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---- 141 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~---- 141 (294)
|+..|||+|+|.|+|... |++.+++|+|||.|+|+++..++.||+|+|.++.+ + +-+..++||.++.+..
T Consensus 2 ~~~iAiIpAR~gSKgI~~---KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~--~-Il~~A~~ygak~~~~Rp~~L 75 (228)
T COG1083 2 MKNIAIIPARGGSKGIKN---KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSE--E-ILEEAKKYGAKVFLKRPKEL 75 (228)
T ss_pred cceEEEEeccCCCCcCCc---cchHHhCCcchHHHHHHHHhcCCccceEEEcCCcH--H-HHHHHHHhCccccccCChhh
Confidence 678999999999999987 99999999999999999999999999999988875 3 3455678887664432
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccceEE--eCCCCcEEEec
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKE--ANSESFVVRTL 215 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~~~~--~~~~G~v~~~~ 215 (294)
+.+....++.++++....+.+.++.++++.|+++..+|++.++.+.++ +.++.+++.....+. ..++|.+...-
T Consensus 76 A~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~ 155 (228)
T COG1083 76 ASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVN 155 (228)
T ss_pred ccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcCCceeecc
Confidence 333345678888888876667777789999999999999999999764 567778887554321 12234333221
Q ss_pred cccceeeccCCceeC-hHHHHHHHHhhhhCC-cccccHHHHHHh---CCCCEEEEe-cCCceecCCCHHHHHHHHHHHhh
Q 022657 216 DRKTLWEMQTPQVIK-PDLLKKGFELVNREG-LEVTDDVSIVEH---LKHPVYITE-GSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 216 ~~~~l~~~~tP~~f~-~~~l~~~~~~~~~~g-~~~td~~~~l~~---~g~~v~~v~-~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
+ .|..+. +..+.++|. .+| +++.+...++++ .+.+...+. .....+|||++.||+.+|.++..
T Consensus 156 ~--------~~~~~~rrQ~Lpk~Y~---~NgaiYi~~~~~l~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 156 E--------DPDFETRRQDLPKAYR---ENGAIYINKKDALLENDCFFIPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred c--------CCccccccccchhhhh---hcCcEEEehHHHHhhcCceecCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1 122222 234566665 345 566665455543 244444433 44668999999999999999876
Q ss_pred hhc
Q 022657 290 SSE 292 (294)
Q Consensus 290 ~~~ 292 (294)
...
T Consensus 225 ~~~ 227 (228)
T COG1083 225 KEE 227 (228)
T ss_pred hhc
Confidence 543
No 52
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.82 E-value=1.6e-18 Score=156.68 Aligned_cols=214 Identities=15% Similarity=0.191 Sum_probs=138.6
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh----------c--
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------I-- 133 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----------~-- 133 (294)
++||||||.|+||+ ..+||+|+|++|+|||+|+++.+.++ ++++|+|++++.. +.+.+++.. .
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGK-RAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCch-HHHHHHhCCcHHHHHHHHhccc
Confidence 58999999999996 36899999999999999999999986 8999999999875 334433321 1
Q ss_pred ------------CCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHH-HHHHHHHHHHhcCcEEE-EEE
Q 022657 134 ------------NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-DVQKVLMDALRVGAAVL-GVP 197 (294)
Q Consensus 134 ------------~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~-~i~~ll~~~~~~~~~i~-~~~ 197 (294)
+.++.++.+ ..+.++++..+...++. +.++++.+|+++...+ .++++++.+...++.++ +.+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~--~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGD--EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEE 157 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCC--CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 223444432 24568899999998863 4466678998876654 79999998765554433 333
Q ss_pred cc------cceEEeCC----CCcEEEeccccc------eeeccCCceeChHHHHHHHHhhh-h-CC-cccccHHHHHHhC
Q 022657 198 AK------ATIKEANS----ESFVVRTLDRKT------LWEMQTPQVIKPDLLKKGFELVN-R-EG-LEVTDDVSIVEHL 258 (294)
Q Consensus 198 ~~------~~~~~~~~----~G~v~~~~~~~~------l~~~~tP~~f~~~~l~~~~~~~~-~-~g-~~~td~~~~l~~~ 258 (294)
.. ..+...++ .|.|.++.++.. ......-++|+.+.+.. +.... . .+ +.+++....+...
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~e~~~~d~i~~l~~~ 236 (267)
T cd02541 158 VPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDI-LENTKPGKGGEIQLTDAIAKLLEE 236 (267)
T ss_pred cChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHH-HHhCCCCCCCcEEHHHHHHHHHhc
Confidence 22 12233343 235666554321 11111235566654433 22211 1 12 4455544444444
Q ss_pred CCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 259 KHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 259 g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
+ ++..++.+..|.||+||+||..+..-+.
T Consensus 237 ~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 237 E-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred C-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 5 7877777778999999999999886553
No 53
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.82 E-value=3.1e-19 Score=153.19 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=93.1
Q ss_pred eEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHH
Q 022657 69 SVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQD 148 (294)
Q Consensus 69 ~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 148 (294)
.+||||||+|+||+. .||+|++++|+|||+|+++++... ++++|+||+++.. +..+.++...+..+ ....+.+...
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~-~~~~~~l~~~~~~~-~~~~g~G~~~ 77 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHT-PKTEEYINSAYKDY-KNASGKGYIE 77 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCH-HHHHHHHhhcCcEE-EecCCCCHHH
Confidence 589999999999985 689999999999999999999875 5999999998764 45555555433221 2246677888
Q ss_pred HHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 149 SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 149 sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
++..|++.+.. .+.++++.+|+||+++++++.+++.+...
T Consensus 78 ~l~~al~~~~~-~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 78 DLNECIGELYF-SEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred HHHHHhhcccC-CCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 99999986532 45788889999999999999999988654
No 54
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.82 E-value=8.1e-19 Score=146.17 Aligned_cols=111 Identities=24% Similarity=0.395 Sum_probs=94.3
Q ss_pred eEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHH
Q 022657 69 SVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQD 148 (294)
Q Consensus 69 ~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 148 (294)
.+||+|||+|+|||. .-|||++++|||||.|+++++.+ .+++|+|++++.. ..+++++...+.++ +..++.+...
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~t-p~t~~~~~~~gv~v-i~tpG~GYv~ 76 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHT-PKTKEYLESVGVKV-IETPGEGYVE 76 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCC-HhHHHHHHhcCceE-EEcCCCChHH
Confidence 479999999999995 36999999999999999999987 5899999999885 56677776666433 3457778899
Q ss_pred HHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 149 SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 149 sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
.+..+++.+. .-+++..+|.||+.+..++.+++.+.
T Consensus 77 Dl~~al~~l~---~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 77 DLRFALESLG---TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred HHHHHHHhcC---CceEEEecccccCCHHHHHHHHHHHh
Confidence 9999999886 25778889999999999999999876
No 55
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=3.1e-18 Score=147.66 Aligned_cols=217 Identities=16% Similarity=0.201 Sum_probs=144.8
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-CC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~-~~ 144 (294)
|+..+||+|+-.|||+.+ |||..|+|+|||.|+.+++.++ +.++++|.|+++. +.+..+++|.++.+... ..
T Consensus 2 ~~~~viIPAR~~STRLpg---KPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDde~---I~~av~~~G~~avmT~~~h~ 74 (247)
T COG1212 2 MKFVVIIPARLASTRLPG---KPLADIGGKPMIVRVAERALKS-GADRVVVATDDER---IAEAVQAFGGEAVMTSKDHQ 74 (247)
T ss_pred CceEEEEecchhcccCCC---CchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCCHH---HHHHHHHhCCEEEecCCCCC
Confidence 678899999999999998 9999999999999999999987 7999999999863 45566777877666532 22
Q ss_pred cHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc--------eEEe-CCCCcEE
Q 022657 145 ERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVV 212 (294)
Q Consensus 145 ~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~--------~~~~-~~~G~v~ 212 (294)
+..+-+..+++.+. .+.++|+.+++|.||+.++.|+++++.++...+ +.++++..+. ++.+ |.+|+..
T Consensus 75 SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~AL 154 (247)
T COG1212 75 SGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYAL 154 (247)
T ss_pred CccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEE
Confidence 22444666666663 245688889999999999999999999886644 3344444321 2222 4445422
Q ss_pred ---Ee---cccc-----ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHH--HhCCCCEEEEecCCc-eecCCCHH
Q 022657 213 ---RT---LDRK-----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSYT-NIKVTTPD 278 (294)
Q Consensus 213 ---~~---~~~~-----~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l--~~~g~~v~~v~~~~~-~idVdTpe 278 (294)
+. +.++ .++..-.-++|+...|.+..++ ....++-++..+-+ .+.|.++.+...... .+.|||||
T Consensus 155 YFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~-~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~E 233 (247)
T COG1212 155 YFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVAL-KPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPE 233 (247)
T ss_pred EEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhc-CCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHH
Confidence 11 1222 1111112245555555554433 22223323222222 246889888666544 58999999
Q ss_pred HHHHHHHHHhhh
Q 022657 279 DLLIAERILNLS 290 (294)
Q Consensus 279 DL~~ae~~l~~~ 290 (294)
||+++++++.+.
T Consensus 234 DLe~v~~~~~~~ 245 (247)
T COG1212 234 DLERVRKILSNN 245 (247)
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 56
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.82 E-value=1.4e-18 Score=152.69 Aligned_cols=204 Identities=17% Similarity=0.147 Sum_probs=131.8
Q ss_pred eEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh--cCCceEEeCCC
Q 022657 69 SVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPG 143 (294)
Q Consensus 69 ~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~--~~~~i~~v~~~ 143 (294)
+|||||||.|+||+. .+||+|+|++|+|||+|+++.+.++ ++++|+|++++.. +.+.+++.. ++..+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLA-DQIEAHLGDSRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCH-HHHHHHHhcccCCceEEEecCC
Confidence 489999999999963 5899999999999999999999986 7999999999875 555666554 44445444332
Q ss_pred ---CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHH--hcCcEEEE--EEccc----ceEEeCCCCcEE
Q 022657 144 ---KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLG--VPAKA----TIKEANSESFVV 212 (294)
Q Consensus 144 ---~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~--~~~~~i~~--~~~~~----~~~~~~~~G~v~ 212 (294)
.+...++..++..+.. +.++++.+|.++ ...+.++++.+. ..++.+++ ++... .....+++|.|.
T Consensus 79 ~~~~g~~~~l~~~~~~~~~--~~~lv~~~D~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLGD--EPFLVVNGDILW--DGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcCC--CCEEEEeCCeee--CCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEe
Confidence 3457889999998863 557778899865 345777777765 33443322 23222 223456667776
Q ss_pred Eeccccc-eeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHH
Q 022657 213 RTLDRKT-LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 283 (294)
Q Consensus 213 ~~~~~~~-l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~a 283 (294)
.+.++.. -.....-++|+.+.+.... +..+.++|....+...+ ++..+..+..|.||+||+||..|
T Consensus 155 ~~~~~~~~~~~~~Giyi~~~~~l~~l~----~~~~~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVAPFTFTGIQILSPELFAGIP----PGKFSLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCCceEEEEEEEEcHHHHhhCC----cCcccHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence 5544321 1111123456654433221 12244444444443433 55555677789999999999864
No 57
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.82 E-value=1.7e-18 Score=164.23 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=142.5
Q ss_pred CceeEEEEeCCCCCCCCC---CCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCC---
Q 022657 66 KSVSVILLAGGRGKRMGA---NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV--- 135 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~---~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~--- 135 (294)
.++.|||||||.||||+. ++||+|+|++|+ |||+|+++.|.++ ++++|+|++++.. +.+.++++. ++.
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~ 79 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQP-LELNNHIGIGSPWDLDRI 79 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCH-HHHHHHHhCCCcccccCC
Confidence 357899999999999973 789999999999 8999999999986 8999999999975 556666532 211
Q ss_pred --ceEE----eCC-----CCcHHHHHHHHHHhcccC-CCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE--EEEEEc--c
Q 022657 136 --DLKF----SLP-----GKERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPA--K 199 (294)
Q Consensus 136 --~i~~----v~~-----~~~~~~sv~~al~~~~~~-~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~--i~~~~~--~ 199 (294)
.+.+ ... ..+.+++++.|+..+... .+.++++.+|. +....+.++++.+...++. +++... .
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~ 157 (380)
T PRK05293 80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (380)
T ss_pred CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchh
Confidence 1222 211 134588999999888532 35677888886 4456788888877655442 332222 1
Q ss_pred c----ceEEeCCCCcEEEeccccc----eeeccCCceeChHHHHHHHHhhhhC--C--cccccHHHHHHhCCCCEEEEec
Q 022657 200 A----TIKEANSESFVVRTLDRKT----LWEMQTPQVIKPDLLKKGFELVNRE--G--LEVTDDVSIVEHLKHPVYITEG 267 (294)
Q Consensus 200 ~----~~~~~~~~G~v~~~~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~~--g--~~~td~~~~l~~~g~~v~~v~~ 267 (294)
+ .+...+++|.|.++.++.. ......-++|+.+.+...+...... + ...+|....+...+.++..+..
T Consensus 158 ~~~~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~ 237 (380)
T PRK05293 158 EASRFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPF 237 (380)
T ss_pred hccccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEe
Confidence 1 2233455677766554421 1111223567766555544432211 1 1123333344455677888777
Q ss_pred CCceecCCCHHHHHHHHHHHh
Q 022657 268 SYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 268 ~~~~idVdTpeDL~~ae~~l~ 288 (294)
+..|.||+||+||..|+..+.
T Consensus 238 ~g~w~digt~~~~~~a~~~~l 258 (380)
T PRK05293 238 KGYWKDVGTIESLWEANMELL 258 (380)
T ss_pred CCEEEeCCCHHHHHHHHHHHc
Confidence 778999999999999985543
No 58
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.5e-18 Score=162.02 Aligned_cols=215 Identities=19% Similarity=0.234 Sum_probs=143.6
Q ss_pred eeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeC
Q 022657 68 VSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~ 141 (294)
++|||||||.||||. .++||||+|++|+|||+|+++.|.+. ++++|+|++++.. +.+++++.. ++.++.++.
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~-~~i~~~~~d~~~~~~~I~y~~ 79 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLG-EQIEEYFGDGEGLGVRITYVV 79 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccch-HHHHHHHhcccccCCceEEEe
Confidence 579999999999996 57899999999999999999999985 8999999999985 667777664 246777764
Q ss_pred C--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc----eEEeC-CCCcEE
Q 022657 142 P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEAN-SESFVV 212 (294)
Q Consensus 142 ~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~----~~~~~-~~G~v~ 212 (294)
. ..+.+.+++.+...+.. +.++++.+|.. .+.+ ++.+++.+++.++ .+......+. +...+ +++.+.
T Consensus 80 e~~~lGTag~l~~a~~~l~~--~~f~v~~GDv~-~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~ 155 (358)
T COG1208 80 EKEPLGTAGALKNALDLLGG--DDFLVLNGDVL-TDLD-LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVV 155 (358)
T ss_pred cCCcCccHHHHHHHHHhcCC--CcEEEEECCee-eccC-HHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEE
Confidence 3 23458889999999874 44566678753 3333 9999998876643 2333333332 22333 224677
Q ss_pred Eeccccce------eeccCCceeChHHHHHHHHhhhhCCccccc-HHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHH
Q 022657 213 RTLDRKTL------WEMQTPQVIKPDLLKKGFELVNREGLEVTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAER 285 (294)
Q Consensus 213 ~~~~~~~l------~~~~tP~~f~~~~l~~~~~~~~~~g~~~td-~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~ 285 (294)
++.++... +....-++|+.+.+. .+... ....+.+ ....+...+..++.+..+..|+||+||+||..|++
T Consensus 156 ~f~ekp~~~~~~~~~in~Giyi~~~~v~~-~i~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~ 232 (358)
T COG1208 156 EFREKPGPEEPPSNLINAGIYIFDPEVFD-YIEKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANE 232 (358)
T ss_pred EEEecCCCCCCCCceEEeEEEEECHHHhh-hcccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHH
Confidence 66655311 111122455555443 12111 1122222 22344444556777777779999999999999999
Q ss_pred HHhhhh
Q 022657 286 ILNLSS 291 (294)
Q Consensus 286 ~l~~~~ 291 (294)
.+....
T Consensus 233 ~~~~~~ 238 (358)
T COG1208 233 LLLRGD 238 (358)
T ss_pred HHHhcc
Confidence 887543
No 59
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.81 E-value=3.1e-18 Score=154.12 Aligned_cols=210 Identities=14% Similarity=0.177 Sum_probs=134.9
Q ss_pred eEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-------------
Q 022657 69 SVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------- 132 (294)
Q Consensus 69 ~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~------------- 132 (294)
++||||||.||||+. .+||+|+|++|+|||+|+++.+..+ ++++|+|++++.. +.+.+++..
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGK-RAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhh
Confidence 589999999999963 6899999999999999999999986 8999999999875 344444421
Q ss_pred ---------c--CCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCH-HHHHHHHHHHHhcCcEEE-EEE
Q 022657 133 ---------I--NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-KDVQKVLMDALRVGAAVL-GVP 197 (294)
Q Consensus 133 ---------~--~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~-~~i~~ll~~~~~~~~~i~-~~~ 197 (294)
+ +..+.++.+ ..+..++++.+...+. + +.++++.+|.++... ..++++++.+.+.++.++ +..
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~-~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 157 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG-D-EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEE 157 (260)
T ss_pred HHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC-C-CCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEE
Confidence 0 112334322 3346888999998884 2 445667899998765 489999998876665433 322
Q ss_pred cc--c----ceEEeC----CCCcEEEeccccc------eeeccCCceeChHHHHHHHHhhhh-C-CcccccHHHHHHhCC
Q 022657 198 AK--A----TIKEAN----SESFVVRTLDRKT------LWEMQTPQVIKPDLLKKGFELVNR-E-GLEVTDDVSIVEHLK 259 (294)
Q Consensus 198 ~~--~----~~~~~~----~~G~v~~~~~~~~------l~~~~tP~~f~~~~l~~~~~~~~~-~-g~~~td~~~~l~~~g 259 (294)
.. + .+...+ ++|.|..+.++.. -.....-++|+.+.+......... . .+.++|....+...
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~- 236 (260)
T TIGR01099 158 VPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK- 236 (260)
T ss_pred CChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc-
Confidence 21 1 122333 1256766654321 111112356666544332221111 1 24555544444443
Q ss_pred CCEEEEecCCceecCCCHHHHHHH
Q 022657 260 HPVYITEGSYTNIKVTTPDDLLIA 283 (294)
Q Consensus 260 ~~v~~v~~~~~~idVdTpeDL~~a 283 (294)
.++..++.+..|.||+||+||..+
T Consensus 237 ~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 237 ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CCEEEEEcceEEEeCCCHHHHhhC
Confidence 468877777889999999999753
No 60
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.81 E-value=4.7e-18 Score=152.68 Aligned_cols=213 Identities=12% Similarity=0.105 Sum_probs=136.6
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc---CCceEE----
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKF---- 139 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~---- 139 (294)
|||||||.|+||+ ..+||+|+|++|+|||+|+++.+..+ ++++|+|++++.. +.++++++.+ +.++.+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKG-HVIKEYFLNYFLHNSDVTIDLGT 78 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCH-HHHHHHHHhhhhhcCceeEeecc
Confidence 6899999999996 36899999999999999999999986 8999999999875 5566665442 112211
Q ss_pred -----eCC--------------CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcc-
Q 022657 140 -----SLP--------------GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK- 199 (294)
Q Consensus 140 -----v~~--------------~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~- 199 (294)
..+ ..+..++++.|...+..+ +.++++++|.- . ...+.++++.+...++.++++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~-~~~lv~~gD~i-~-~~dl~~ll~~h~~~~~~~tl~~~~~ 155 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD-ETFMLTYGDGV-S-DVNINALIEFHRSHGKLATVTAVHP 155 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCCC-CeEEEEcCCEE-E-CCCHHHHHHHHHHcCCCEEEEEecC
Confidence 111 123578899999988532 55777789853 3 456688888776655533222211
Q ss_pred -c--ceEEeCCCCcEEEeccccc---eeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceec
Q 022657 200 -A--TIKEANSESFVVRTLDRKT---LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIK 273 (294)
Q Consensus 200 -~--~~~~~~~~G~v~~~~~~~~---l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~id 273 (294)
. .....+++|+|..+.++.. -.....-+.|+.+.+ +.+... .....+|....+...+ ++..++.+..|.|
T Consensus 156 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~i~~Giyi~~~~l~-~~l~~~--~~~~~~d~l~~li~~~-~v~~~~~~g~w~~ 231 (253)
T cd02524 156 PGRFGELDLDDDGQVTSFTEKPQGDGGWINGGFFVLEPEVF-DYIDGD--DTVFEREPLERLAKDG-ELMAYKHTGFWQC 231 (253)
T ss_pred CCcccEEEECCCCCEEEEEECCCCCCceEEEEEEEECHHHH-Hhhccc--cchhhHHHHHHHHhcC-CEEEEecCCEEEe
Confidence 1 2234566788876554321 111112245555443 222211 1122334444444444 6777777778999
Q ss_pred CCCHHHHHHHHHHHhhhh
Q 022657 274 VTTPDDLLIAERILNLSS 291 (294)
Q Consensus 274 VdTpeDL~~ae~~l~~~~ 291 (294)
|||++||+.++++++...
T Consensus 232 I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 232 MDTLRDKQTLEELWNSGK 249 (253)
T ss_pred CcCHHHHHHHHHHHHcCC
Confidence 999999999999986543
No 61
>PRK10122 GalU regulator GalF; Provisional
Probab=99.81 E-value=1.1e-17 Score=154.10 Aligned_cols=214 Identities=15% Similarity=0.202 Sum_probs=137.8
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-----------
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------- 132 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----------- 132 (294)
.+.|||||||.||||+ ..+||+|+||+|+|+|+|+++.+..+ ++++|+|++++.. +.+.+++..
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~-~~i~~~~~~~~~l~~~~~~~ 80 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASK-NAVENHFDTSYELESLLEQR 80 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCh-HHHHHHHhcchhHHHHHhhc
Confidence 5689999999999997 56899999999999999999999986 8999999999875 444444421
Q ss_pred --------------cCCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCH-------HHHHHHHHHHHhc
Q 022657 133 --------------INVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRV 189 (294)
Q Consensus 133 --------------~~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~-------~~i~~ll~~~~~~ 189 (294)
++.++.++.+ ..+.+++++++...+. +.+++++ .+|. ++++ -++.++++.+.+.
T Consensus 81 ~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~-~~~fvvi-~gD~-l~~~~~~~~~~~dl~~li~~h~~~ 157 (297)
T PRK10122 81 VKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG-DNPFVVV-LPDV-VIDDASADPLRYNLAAMIARFNET 157 (297)
T ss_pred chhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC-CCCEEEE-ECCe-eccCccccccchhHHHHHHHHHHh
Confidence 1234555533 2346889999999985 2355544 4775 5543 3688999887665
Q ss_pred CcE-EEEEEcc-c----ceEEeC----CCC---cEEEeccccce-------eeccCCceeChHHHHHHHHhhhhC--C-c
Q 022657 190 GAA-VLGVPAK-A----TIKEAN----SES---FVVRTLDRKTL-------WEMQTPQVIKPDLLKKGFELVNRE--G-L 246 (294)
Q Consensus 190 ~~~-i~~~~~~-~----~~~~~~----~~G---~v~~~~~~~~l-------~~~~tP~~f~~~~l~~~~~~~~~~--g-~ 246 (294)
++. +++.... + +....+ ++| .|.++.++... .....-++|+.+.+.. +...... + +
T Consensus 158 ~~~~~~~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~~e~ 236 (297)
T PRK10122 158 GRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPE-LERTEPGAWGRI 236 (297)
T ss_pred CCcEEEEEECCCCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHH-HHhCCCCCCCee
Confidence 543 3333321 1 223333 245 34554443210 1112235666664433 3322111 2 4
Q ss_pred ccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 247 EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 247 ~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
.++|....+... .++..+..+..|+||+||+||..+..-+
T Consensus 237 ~ltd~i~~l~~~-~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 237 QLTDAIAELAKK-QSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred eHHHHHHHHHhC-CCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 566655555443 4677777778899999999999887665
No 62
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.80 E-value=9.3e-19 Score=145.99 Aligned_cols=117 Identities=25% Similarity=0.417 Sum_probs=94.0
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CCCcHHH
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQD 148 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~ 148 (294)
|||||||+|+|||. ||+|++++|+|||+|+++.+.+. ++++|+|+++++ .+.+.+..++..+.... .+.++..
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~~---~~~~~~~~~~~~~v~~~~~~~G~~~ 74 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPIGGKPLIERVLEALREA-GVDDIVVVTGEE---EIYEYLERYGIKVVVDPEPGQGPLA 74 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEETTEEHHHHHHHHHHHH-TESEEEEEESTH---HHHHHHTTTTSEEEE-STSSCSHHH
T ss_pred CEEECCcCcccCCC--CccceeECCccHHHHHHHHhhcc-CCceEEEecChH---HHHHHHhccCceEEEeccccCChHH
Confidence 69999999999997 89999999999999999999987 599999999983 23334444443332222 2567899
Q ss_pred HHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 149 SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 149 sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
|++.|+..+. ..+.++++.+|+||++++.++.+++.+.+.+..+
T Consensus 75 sl~~a~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i 118 (160)
T PF12804_consen 75 SLLAALSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADI 118 (160)
T ss_dssp HHHHHHHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcE
Confidence 9999999984 3678899999999999999999999987655444
No 63
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.80 E-value=9.6e-18 Score=151.02 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=136.5
Q ss_pred eEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc-----CCceE--
Q 022657 69 SVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-----NVDLK-- 138 (294)
Q Consensus 69 ~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~-----~~~i~-- 138 (294)
+|||||||.||||+. ++||+|+||+|+|||+|+++.+.++ ++++|+||+++.. +.+.+++... +.++.
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMA 78 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCH-HHHHHHHHhhhhcccCeeEEec
Confidence 479999999999963 4899999999999999999999986 8999999999875 4555555432 11111
Q ss_pred -----------------EeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE--EEEE
Q 022657 139 -----------------FSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVP 197 (294)
Q Consensus 139 -----------------~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i--~~~~ 197 (294)
+..+ ..+.+++++++...+. .+.++++++|. +....+.++++.+.+.++.+ +.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~~~~ 154 (254)
T TIGR02623 79 DNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVTAVQ 154 (254)
T ss_pred ccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEEEec
Confidence 1111 1234788999998886 34466778985 44667889988776655433 3322
Q ss_pred cccc--eEEeCCCCcEEEeccccce---eeccCCceeChHHHHHHHHhhhhCC-cccccHHHHHHhCCCCEEEEecCCce
Q 022657 198 AKAT--IKEANSESFVVRTLDRKTL---WEMQTPQVIKPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTN 271 (294)
Q Consensus 198 ~~~~--~~~~~~~G~v~~~~~~~~l---~~~~tP~~f~~~~l~~~~~~~~~~g-~~~td~~~~l~~~g~~v~~v~~~~~~ 271 (294)
.... ....+ +|.|..+.++... ......++|..+.+ +.+.. .. ...+|....+...+ ++..+..+..|
T Consensus 155 ~~~~yG~v~~d-~~~V~~~~Ekp~~~~~~i~~Giyi~~~~il-~~l~~---~~~~~~~d~i~~l~~~~-~v~~~~~~g~w 228 (254)
T TIGR02623 155 PPGRFGALDLE-GEQVTSFQEKPLGDGGWINGGFFVLNPSVL-DLIDG---DATVWEQEPLETLAQRG-ELSAYEHSGFW 228 (254)
T ss_pred CCCcccEEEEC-CCeEEEEEeCCCCCCCeEEEEEEEEcHHHH-hhccc---cCchhhhhHHHHHHhCC-CEEEEeCCCEE
Confidence 2111 22334 4567666554211 11122355665544 33321 11 12234333444434 57777777889
Q ss_pred ecCCCHHHHHHHHHHHhhhhc
Q 022657 272 IKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 272 idVdTpeDL~~ae~~l~~~~~ 292 (294)
.||+||+||+.++.+++...+
T Consensus 229 ~dIgt~~~~~~~~~~~~~~~~ 249 (254)
T TIGR02623 229 QPMDTLRDKNYLEELWESGRA 249 (254)
T ss_pred ecCCchHHHHHHHHHHHcCCC
Confidence 999999999999999876543
No 64
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.80 E-value=9.9e-18 Score=148.57 Aligned_cols=210 Identities=13% Similarity=0.196 Sum_probs=135.2
Q ss_pred eEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc----CCceEEeC
Q 022657 69 SVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI----NVDLKFSL 141 (294)
Q Consensus 69 ~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~----~~~i~~v~ 141 (294)
++||||||.|+||+. .+||+|+|++|+|||+|+++.+... ++++|+|++++.. +.+.+++..+ +..+.+..
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~ 79 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRP-EDMVPFLKEYEKKLGIKITFSI 79 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCH-HHHHHHHhcccccCCeEEEecc
Confidence 589999999999963 5899999999999999999999986 7999999999875 4455555432 33343332
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEccc----ceEEeCC-CCcEE
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKA----TIKEANS-ESFVV 212 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~----~~~~~~~-~G~v~ 212 (294)
...+..+++..|...+....+.++++.+|..+ ...++++++.+.+.+ +.+++.+..+ .+...++ +|+|.
T Consensus 80 ~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~ 157 (233)
T cd06425 80 ETEPLGTAGPLALARDLLGDDDEPFFVLNSDVIC--DFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIE 157 (233)
T ss_pred CCCCCccHHHHHHHHHHhccCCCCEEEEeCCEee--CCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEE
Confidence 23345888999999886422335666788643 334688888776554 3455555432 2334455 57777
Q ss_pred Eeccccc----eeeccCCceeChHHHHHHHHhhhhCCccc-ccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 213 RTLDRKT----LWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 213 ~~~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~~g~~~-td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
++.++.. -+....-++|+.+.+.. +.. ..... .+....+.. ..++..++.+..|.||+||+||..|.+.+
T Consensus 158 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~-l~~---~~~~~~~~~~~~l~~-~~~v~~~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 158 RFVEKPKVFVGNKINAGIYILNPSVLDR-IPL---RPTSIEKEIFPKMAS-EGQLYAYELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred EEEECCCCCCCCEEEEEEEEECHHHHHh-ccc---CcccchhhhHHHHHh-cCCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence 6654321 01111235666654432 221 11111 122222333 34788777778899999999999998764
No 65
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.79 E-value=5e-18 Score=148.69 Aligned_cols=203 Identities=15% Similarity=0.195 Sum_probs=130.1
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeCC-
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP- 142 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~~- 142 (294)
|||||||.|+||+ ..+||+|+|++|+|||+|+++.+... ++++|+|++++.. +.+.+++.. ++.++.++.+
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~ 78 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLA-EMIEDYFGDGSKFGVNISYVRED 78 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCH-HHHHHHHCCccccCccEEEEECC
Confidence 5899999999996 35799999999999999999999986 7999999999874 455555542 3344555432
Q ss_pred -CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcc--c--ceEEeCCCCcEEEec
Q 022657 143 -GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--A--TIKEANSESFVVRTL 215 (294)
Q Consensus 143 -~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~--~--~~~~~~~~G~v~~~~ 215 (294)
..+..+++..+.... .+.++++.+|. +....+..+++.+...++ .+++.+.. . .+...+ +|.|..+.
T Consensus 79 ~~~g~~~~l~~~~~~~---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ 152 (220)
T cd06426 79 KPLGTAGALSLLPEKP---TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETE-GGRITSIE 152 (220)
T ss_pred CCCcchHHHHHHHhhC---CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEC-CCEEEEEE
Confidence 223466666555443 35567778884 556688899988766543 23333321 1 122344 37776655
Q ss_pred cccc--eeeccCCceeChHHHHHHHHhhhhCC-cccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 216 DRKT--LWEMQTPQVIKPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 216 ~~~~--l~~~~tP~~f~~~~l~~~~~~~~~~g-~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
++.. .+....-+.|+.+.+. .....+ +++++....+...+.++..++.+..|.||+||+||..|+
T Consensus 153 ek~~~~~~~~~Giy~~~~~~~~----~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 153 EKPTHSFLVNAGIYVLEPEVLD----LIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred ECCCCCCeEEEEEEEEcHHHHh----hcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 4321 1111122456654332 122222 345554444555667788888878899999999998873
No 66
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=1.4e-17 Score=161.26 Aligned_cols=209 Identities=19% Similarity=0.265 Sum_probs=139.5
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--CCCc
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKE 145 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~~~ 145 (294)
+.|||||||.|+||+..+||+|++++|+|||+|+++.+... +++|+|++++.. +.+.+++.. .+.++. ...+
T Consensus 1 m~avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~-~~i~~~~~~---~~~~~~~~~~~g 74 (448)
T PRK14357 1 MRALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEA-ELVKKLLPE---WVKIFLQEEQLG 74 (448)
T ss_pred CeEEEECCCCCccCCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHhccc---ccEEEecCCCCC
Confidence 36899999999999987899999999999999999999874 589999999875 445444331 233332 2234
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc----eEEeCCCCcEEEecccc-
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDRK- 218 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~----~~~~~~~G~v~~~~~~~- 218 (294)
..++++.++..++. .+.++++++|+|+++...++++++.+.+.++ .+++.+..+. ....+ +|.+ +..++.
T Consensus 75 ~~~ai~~a~~~l~~-~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~ 151 (448)
T PRK14357 75 TAHAVMCARDFIEP-GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKD 151 (448)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCC
Confidence 68899999998853 3678889999999999999999998865543 3444454332 22223 5665 443311
Q ss_pred ------ceeeccCC-ceeChHHHHHHHHhhhh---CC-cccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHHHHH
Q 022657 219 ------TLWEMQTP-QVIKPDLLKKGFELVNR---EG-LEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAER 285 (294)
Q Consensus 219 ------~l~~~~tP-~~f~~~~l~~~~~~~~~---~g-~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~ae~ 285 (294)
......+. +.|+.+.+.+++..... .+ ++++|....+ .++..+... ..|++++||+||+.++.
T Consensus 152 ~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~ 227 (448)
T PRK14357 152 APEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEK 227 (448)
T ss_pred CChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHH
Confidence 11122232 66777766665543222 12 4455443333 234444333 34889999999999988
Q ss_pred HHhh
Q 022657 286 ILNL 289 (294)
Q Consensus 286 ~l~~ 289 (294)
++..
T Consensus 228 ~~~~ 231 (448)
T PRK14357 228 QLRM 231 (448)
T ss_pred HHHH
Confidence 8754
No 67
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.78 E-value=1.5e-17 Score=159.40 Aligned_cols=219 Identities=16% Similarity=0.170 Sum_probs=141.7
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cC---Cce
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN---VDL 137 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~---~~i 137 (294)
.++.|||||||.||||+ .++||+|+||+|+ |||+|+++.+.++ ++++|+|++++.. +.+.+++.. +. ...
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKS-HSLDRHISQTWRLSGLLG 81 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCH-HHHHHHHHhCcCccccCC
Confidence 35789999999999997 6799999999998 9999999999986 8999999999885 555555532 21 111
Q ss_pred EEe---C-C-------CCcHHHHHHHHHHhcccC-CCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE--EEEEEc--c--
Q 022657 138 KFS---L-P-------GKERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPA--K-- 199 (294)
Q Consensus 138 ~~v---~-~-------~~~~~~sv~~al~~~~~~-~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~--i~~~~~--~-- 199 (294)
.++ . + ..+.+++++.++..+.++ .+.++++.+|. +....+.++++.+...++. +++... .
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~ 159 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADH--VYRMDPRQMVDFHIESGAGVTVAAIRVPREEA 159 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCcEEEEEEecchHHc
Confidence 222 1 1 134578899999888532 25677888886 4456888999887665542 333221 1
Q ss_pred --cceEEeCCCCcEEEeccccc-----------eeeccCCceeChHHHHHHHHhhh--hCC-ccc-ccHHHHHHhCCCCE
Q 022657 200 --ATIKEANSESFVVRTLDRKT-----------LWEMQTPQVIKPDLLKKGFELVN--REG-LEV-TDDVSIVEHLKHPV 262 (294)
Q Consensus 200 --~~~~~~~~~G~v~~~~~~~~-----------l~~~~tP~~f~~~~l~~~~~~~~--~~g-~~~-td~~~~l~~~g~~v 262 (294)
..+...+++|.|..+.++.. .+....-++|+.+.|.+.+.... ..+ ..+ +|....+...+ ++
T Consensus 160 ~~~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-~v 238 (407)
T PRK00844 160 SAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG-RA 238 (407)
T ss_pred ccCCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC-eE
Confidence 22344566788876655421 11112235677766555444311 111 222 34434444434 56
Q ss_pred EEEec------------CCceecCCCHHHHHHHHHHHhh
Q 022657 263 YITEG------------SYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 263 ~~v~~------------~~~~idVdTpeDL~~ae~~l~~ 289 (294)
..++. +..|.||+||+||..+...+-.
T Consensus 239 ~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~ 277 (407)
T PRK00844 239 YVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS 277 (407)
T ss_pred EEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence 55533 4679999999999999876653
No 68
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.78 E-value=1.9e-17 Score=146.17 Aligned_cols=205 Identities=19% Similarity=0.191 Sum_probs=124.3
Q ss_pred EEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC----
Q 022657 70 VILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---- 142 (294)
Q Consensus 70 aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~---- 142 (294)
|||||||.|+||+. .+||+|+|++|+|||+|+++.+.++ ++++|+||+++.. +.+.+++... ..+.++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKK-EQIEELLKKY-PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCH-HHHHHHHhcc-CCeEEEeCcchh
Confidence 68999999999973 4799999999999999999999986 7999999999864 5566665542 23444332
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccc----eEEe-CCCCcEEEeccc
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEA-NSESFVVRTLDR 217 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~----~~~~-~~~G~v~~~~~~ 217 (294)
..+...++..|+..+. +.++++.+|.++ +.+.++.+++. ..+..+++.+..+. +... .++|.+....++
T Consensus 78 ~~g~~~s~~~~~~~~~---~~~lv~~~D~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k 151 (229)
T cd02523 78 ETNNIYSLYLARDFLD---EDFLLLEGDVVF-DPSILERLLSS--PADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISK 151 (229)
T ss_pred hhCcHHHHHHHHHHcC---CCEEEEeCCEec-CHHHHHHHHcC--CCCCeEEEccCcccccccceeeecCccceEeeccc
Confidence 2446889999998883 456778899875 66666655531 22334443332111 1111 112444443332
Q ss_pred c-----ceeeccCCceeChHHHHHH---HHhhhh---CCcccccHHHHHHh-CCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 218 K-----TLWEMQTPQVIKPDLLKKG---FELVNR---EGLEVTDDVSIVEH-LKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 218 ~-----~l~~~~tP~~f~~~~l~~~---~~~~~~---~g~~~td~~~~l~~-~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
. ........+.|+.+.+... .....+ ...++++....+.. .+.++..+.. ..|.|||||+||..|+
T Consensus 152 ~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 152 AKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred CCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 1 1111122345665543322 221111 12344444333333 3445555555 7799999999999874
No 69
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.78 E-value=7.2e-17 Score=148.88 Aligned_cols=214 Identities=16% Similarity=0.182 Sum_probs=137.6
Q ss_pred eeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc-----------
Q 022657 68 VSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI----------- 133 (294)
Q Consensus 68 i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~----------- 133 (294)
+.+||||||.|+||+. .+||+|+|++|+|+|+|+++.+..+ ++++|+|++++.. +.+.++++..
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~~~~~~~~~~~l~~~~ 86 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRV 86 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCH-HHHHHHHccchhhhhhhhhhh
Confidence 5589999999999963 6899999999999999999999986 7999999999875 4455554320
Q ss_pred --------------CCceEEeCCC--CcHHHHHHHHHHhcccCCCeEEEecCCCCC------CCHHHHHHHHHHHHhcCc
Q 022657 134 --------------NVDLKFSLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPL------VLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 134 --------------~~~i~~v~~~--~~~~~sv~~al~~~~~~~~~vlv~~~D~Pl------i~~~~i~~ll~~~~~~~~ 191 (294)
+..+.++.++ .+.+++++.+...+.+ +-++++.+|.++ +...++.++++.+.+.++
T Consensus 87 ~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~--~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~ 164 (302)
T PRK13389 87 KRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD--EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_pred hhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCC--CCEEEEeCcceecccccccccccHHHHHHHHHhcCC
Confidence 1122233222 3457889888888752 334566788775 345788999988765544
Q ss_pred E-EEEEEcccc----eEEeCC-------CCcEEEeccccc------eeeccCCceeChHHHHHHHHhhhh--C-Cccccc
Q 022657 192 A-VLGVPAKAT----IKEANS-------ESFVVRTLDRKT------LWEMQTPQVIKPDLLKKGFELVNR--E-GLEVTD 250 (294)
Q Consensus 192 ~-i~~~~~~~~----~~~~~~-------~G~v~~~~~~~~------l~~~~tP~~f~~~~l~~~~~~~~~--~-g~~~td 250 (294)
. +++.++.+. +...++ +|.|.++.++.. -.....-++|+.+.+ +.+..... . .+.++|
T Consensus 165 ~tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d 243 (302)
T PRK13389 165 SQIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTD 243 (302)
T ss_pred CEEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHH
Confidence 3 444444222 222221 235665554421 011112356666544 44433221 1 255666
Q ss_pred HHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 251 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 251 ~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
....+... .++..+..+..|+||+||+||..+...+
T Consensus 244 ~i~~l~~~-~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 244 AIDMLIEK-ETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred HHHHHHHc-CCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 65555553 4677777777899999999999986654
No 70
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.78 E-value=7.8e-18 Score=157.53 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=84.4
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe---CCC
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS---LPG 143 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v---~~~ 143 (294)
.+.+||||||+|+|||. +|.|++++|+||++|+++.+.. .+++|+|++++.. .... .. ..+.++ ..+
T Consensus 160 ~i~~IILAGGkSsRMG~--dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~~~---~~~~--~~-~~v~~I~D~~~~ 229 (346)
T PRK14500 160 PLYGLVLTGGKSRRMGK--DKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARPSQ---WQGT--PL-ENLPTLPDRGES 229 (346)
T ss_pred CceEEEEeccccccCCC--CcccceeCCccHHHHHHHHHHh--hCCEEEEEeCchH---hhhc--cc-cCCeEEeCCCCC
Confidence 57899999999999996 7999999999999999999975 4899999887542 1111 01 012222 234
Q ss_pred CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 144 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
.++..|++.|++.... +.++++.+|+||++++.+..+++.+.
T Consensus 230 ~GPlagI~aaL~~~~~--~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 230 VGPISGILTALQSYPG--VNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CChHHHHHHHHHhCCC--CCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 5789999999998653 34567889999999999999999764
No 71
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.77 E-value=3.5e-17 Score=144.55 Aligned_cols=208 Identities=15% Similarity=0.147 Sum_probs=127.3
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCch--HHHHHHHhhc--CCceEEeC-
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKI--NVDLKFSL- 141 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~--~~~~~~~~~~--~~~i~~v~- 141 (294)
+||||||.|+||+ ..+||+|++++|+|||+|+++.+..+ ++++|+||+++... +.+.+..... +..+.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKI-FDSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG 79 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhcc-CCceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence 4899999999995 36899999999999999999999987 69999999975421 1222222222 22333332
Q ss_pred CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEccc---ceEEeCCCCcEEEecc
Q 022657 142 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKA---TIKEANSESFVVRTLD 216 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~---~~~~~~~~G~v~~~~~ 216 (294)
...+.++++..|+..+.. .+.++++.+|. +++. .+..++..+...+ +.+++++... ....++++|.|.++.+
T Consensus 80 ~~~g~~~~l~~a~~~l~~-~~~~lv~~~D~-i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~~v~~~~e 156 (231)
T cd04183 80 ETLGAACTVLLAADLIDN-DDPLLIFNCDQ-IVES-DLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDENGRVIETAE 156 (231)
T ss_pred CCCcHHHHHHHHHhhcCC-CCCEEEEecce-eecc-CHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCCCCEEEeEE
Confidence 344578999999988852 24567788986 3443 4556666554332 3344443321 2234566787766554
Q ss_pred ccc--eeeccCCceeChH-HHHHHHHhhh-----hCC-cccccHHHHHHhCCCCEEEEec-CCceecCCCHHHHH
Q 022657 217 RKT--LWEMQTPQVIKPD-LLKKGFELVN-----REG-LEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLL 281 (294)
Q Consensus 217 ~~~--l~~~~tP~~f~~~-~l~~~~~~~~-----~~g-~~~td~~~~l~~~g~~v~~v~~-~~~~idVdTpeDL~ 281 (294)
+.. -......+.|+.+ .+.+.++... ..+ +++++....+...|.++..+.. +..|.|||||+||+
T Consensus 157 k~~~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 157 KEPISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred cCCCCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 321 1111123456654 3333333211 112 3445554555556777877776 57799999999984
No 72
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.77 E-value=5.5e-17 Score=145.99 Aligned_cols=212 Identities=15% Similarity=0.259 Sum_probs=135.9
Q ss_pred EEEEeCC--CCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh----cCCceEEe
Q 022657 70 VILLAGG--RGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFS 140 (294)
Q Consensus 70 aIILAaG--~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----~~~~i~~v 140 (294)
||||||| .|+||+. .+||+|+|++|+|||+|+++.+....++++|+|++++.. +.+.+++.. .+..+.++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~ 79 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYL 79 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHhcccccCceEEEe
Confidence 5899999 8999974 689999999999999999999997447999999999864 555555543 23345554
Q ss_pred CC--CCcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEc--cc----ceEEeC-CC
Q 022657 141 LP--GKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KA----TIKEAN-SE 208 (294)
Q Consensus 141 ~~--~~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~--~~----~~~~~~-~~ 208 (294)
.+ ..+.++++..+...+.. ..+.++++.+|.++ ...++.+++.+.+.++ .+++.++ .+ .+...+ ++
T Consensus 80 ~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~--~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~ 157 (257)
T cd06428 80 QEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCC--DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPST 157 (257)
T ss_pred cCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeec--CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCC
Confidence 32 23457888888887742 23456777898763 3468899988776554 3344333 11 223345 45
Q ss_pred CcEEEeccccc----eeeccCCceeChHHHHHHHHhhhh-----------------CC-ccc-ccHHHHHHhCCCCEEEE
Q 022657 209 SFVVRTLDRKT----LWEMQTPQVIKPDLLKKGFELVNR-----------------EG-LEV-TDDVSIVEHLKHPVYIT 265 (294)
Q Consensus 209 G~v~~~~~~~~----l~~~~tP~~f~~~~l~~~~~~~~~-----------------~g-~~~-td~~~~l~~~g~~v~~v 265 (294)
|.|..+.++.. -+....-++|+.+.+ ..+..... .+ +.+ +|....+.. ..++..+
T Consensus 158 g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~-~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~ 235 (257)
T cd06428 158 GEVLHYVEKPETFVSDLINCGVYLFSPEIF-DTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAG-SGKLYVY 235 (257)
T ss_pred CeEEEEEeCCCCcccceEEEEEEEECHHHH-HHHhhhccccccccccccccccccccceeeehhhhhhHHhc-cCCEEEe
Confidence 77776665421 111112345666544 22221111 11 112 233222323 3368878
Q ss_pred ecCCceecCCCHHHHHHHHHH
Q 022657 266 EGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 266 ~~~~~~idVdTpeDL~~ae~~ 286 (294)
+.+..|.||+||++|..+.+.
T Consensus 236 ~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 236 KTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred cCCCeeecCCCHHHHHhHhhc
Confidence 888899999999999999875
No 73
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.75 E-value=7.3e-17 Score=155.70 Aligned_cols=216 Identities=14% Similarity=0.088 Sum_probs=139.5
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCC-----c
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-----D 136 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~-----~ 136 (294)
++.|||||||.||||. ..+||+|+|++|+ |||+|+++.+.++ ++++|+|++++.. +.+.+++.. +.. .
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~-~~i~~~l~~~~~~~~~~~g 80 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNS-ASLNRHISQTYNFDGFSGG 80 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCH-HHHHHHHhcCcCccccCCC
Confidence 6789999999999996 4689999999999 9999999999986 8999999999875 455555542 110 1
Q ss_pred -eEEe--CCC-------CcHHHHHHHHHHhcccC-CCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE--EEEEEcc----
Q 022657 137 -LKFS--LPG-------KERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAK---- 199 (294)
Q Consensus 137 -i~~v--~~~-------~~~~~sv~~al~~~~~~-~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~--i~~~~~~---- 199 (294)
+.+. .+. .+.+++++.++..+... .+.++++.+|. ++ ..++.++++.+.+.++. +++.+..
T Consensus 81 ~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 158 (429)
T PRK02862 81 FVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRETGADITLAVLPVDEKDA 158 (429)
T ss_pred EEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHcCCCEEEEEEecChhhc
Confidence 1111 110 34588899998888532 35678888997 43 46788898887665542 3333331
Q ss_pred --cceEEeCCCCcEEEeccccc-------------------------eeeccCCceeChHHHHHHHHhhhhCCcccc-cH
Q 022657 200 --ATIKEANSESFVVRTLDRKT-------------------------LWEMQTPQVIKPDLLKKGFELVNREGLEVT-DD 251 (294)
Q Consensus 200 --~~~~~~~~~G~v~~~~~~~~-------------------------l~~~~tP~~f~~~~l~~~~~~~~~~g~~~t-d~ 251 (294)
..+...+++|++..+.++.. .+....-++|+.+.+...+.... ....+. +.
T Consensus 159 ~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~di 237 (429)
T PRK02862 159 SGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKEI 237 (429)
T ss_pred ccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHHH
Confidence 12334455677766554321 01112335677666554443211 001111 11
Q ss_pred HHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 252 VSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 252 ~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
...+ ..+.++..+..+..|.||+||++|..++..+.
T Consensus 238 l~~l-~~~~~v~~~~~~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 238 IPEA-IRDYKVQSYLFDGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred HHHH-hccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 1222 23556777777788999999999999987765
No 74
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.75 E-value=7.5e-17 Score=152.50 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=135.2
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCce--
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDL-- 137 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i-- 137 (294)
.+.|||||||.|+||+ .++||+|+||+|+ |||+|+++.|.++ ++++|+|++++...+.+++++.. ++.++
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3678999999999996 5789999999999 9999999999986 89999999999753366666642 22221
Q ss_pred ----EEe-CCC----CcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE--EEEEEcc--c---
Q 022657 138 ----KFS-LPG----KERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAK--A--- 200 (294)
Q Consensus 138 ----~~v-~~~----~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~--i~~~~~~--~--- 200 (294)
.++ ... .+...++..+...+.. ..+.++++.+|. +....+.++++.+.+.++. +++.++. +
T Consensus 81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~ 158 (369)
T TIGR02092 81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVYKKVKPADASE 158 (369)
T ss_pred CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccc
Confidence 122 111 1335567778877742 235677778986 5567788999887665543 3333332 1
Q ss_pred --ceEEeCCCCcEEEeccc----cceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHh--CCCCEEEEecCCcee
Q 022657 201 --TIKEANSESFVVRTLDR----KTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH--LKHPVYITEGSYTNI 272 (294)
Q Consensus 201 --~~~~~~~~G~v~~~~~~----~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~--~g~~v~~v~~~~~~i 272 (294)
.+...+++|.+..+.++ ........-+.|+.+.+.+.++.....+. .+....++.. .+.+++.+..+..|.
T Consensus 159 ~g~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~-~~~~~d~i~~~~~~~~v~~~~~~g~w~ 237 (369)
T TIGR02092 159 YDTILRFDESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGK-LTSLEELIRENLKELNINAYEYTGYLA 237 (369)
T ss_pred cCcEEEEcCCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCc-cccHHHHHHHHhccCcEEEEecCCcee
Confidence 22334455666543211 11111112345665555444433222221 1111123322 155777777778899
Q ss_pred cCCCHHHHHHHHHHH
Q 022657 273 KVTTPDDLLIAERIL 287 (294)
Q Consensus 273 dVdTpeDL~~ae~~l 287 (294)
||+||+||..|+..+
T Consensus 238 dIgt~~~l~~a~~~~ 252 (369)
T TIGR02092 238 NINSVKSYYKANMDL 252 (369)
T ss_pred EcCCHHHHHHHHHHH
Confidence 999999999998443
No 75
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.75 E-value=2.3e-16 Score=152.02 Aligned_cols=218 Identities=17% Similarity=0.168 Sum_probs=140.4
Q ss_pred CceeEEEEeCCCCCCCCC---CCCceeeeeCCee-hHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cC------
Q 022657 66 KSVSVILLAGGRGKRMGA---NMPKQYLPLLGQP-IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN------ 134 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~---~~pK~Ll~l~Gkp-Ll~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~------ 134 (294)
+++.|||||||.||||+. .+||+|+|++|+| ||+|+++.+.++ ++++|+|++++.. +.+.+++++ ++
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~ 91 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKA-HSLIRHIQRGWSFFREEL 91 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCH-HHHHHHHHhhhcccccCC
Confidence 568999999999999973 6899999999997 999999999986 8999999999875 445555542 21
Q ss_pred -CceEEeC--C-------CCcHHHHHHHHHHhcccC-CCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEc--c
Q 022657 135 -VDLKFSL--P-------GKERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--K 199 (294)
Q Consensus 135 -~~i~~v~--~-------~~~~~~sv~~al~~~~~~-~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~--~ 199 (294)
..+.+.. + ..+.+++++.++..+... .+.++++.+|. +....+.++++.+.+.++ .+++.+. .
T Consensus 92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDH--IYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCe--EeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 0121111 1 124578899999888532 35678888986 445678999998776554 2333232 1
Q ss_pred c----ceEEeCCCCcEEEeccccc-----------eeeccCCceeChHHHHHHHHhhhh--CC-ccc-ccHHHHHHhCCC
Q 022657 200 A----TIKEANSESFVVRTLDRKT-----------LWEMQTPQVIKPDLLKKGFELVNR--EG-LEV-TDDVSIVEHLKH 260 (294)
Q Consensus 200 ~----~~~~~~~~G~v~~~~~~~~-----------l~~~~tP~~f~~~~l~~~~~~~~~--~g-~~~-td~~~~l~~~g~ 260 (294)
+ .+...+++|.|..+.++.. .+....-++|+.+.+.+.+..... .+ ..+ +|....+...+
T Consensus 170 ~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~- 248 (425)
T PRK00725 170 EASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG- 248 (425)
T ss_pred hcccceEEEECCCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC-
Confidence 1 2344566677877665421 111223456777665554433211 11 222 34333333323
Q ss_pred CEEEEec-----------CCceecCCCHHHHHHHHHHHh
Q 022657 261 PVYITEG-----------SYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 261 ~v~~v~~-----------~~~~idVdTpeDL~~ae~~l~ 288 (294)
+++.+.. +..|.||+||++|..++..+.
T Consensus 249 ~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll 287 (425)
T PRK00725 249 KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLA 287 (425)
T ss_pred cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHc
Confidence 4555443 257999999999999987664
No 76
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.74 E-value=1e-16 Score=151.06 Aligned_cols=215 Identities=18% Similarity=0.195 Sum_probs=136.5
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCC------ceE
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV------DLK 138 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~------~i~ 138 (294)
|||||||.||||+ .++||+|+|++|+ |||+|+++.+.++ ++++|+|++++.. +.+.+++.. ++. .+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKS-HSLNRHIQRGWDFDGFIDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccCh-HHHHHHHHhccCccCccCCCEE
Confidence 6999999999997 3589999999999 8999999999986 7999999999875 445555542 111 233
Q ss_pred EeC--C-------CCcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcc--c----
Q 022657 139 FSL--P-------GKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--A---- 200 (294)
Q Consensus 139 ~v~--~-------~~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~--~---- 200 (294)
+.. . ..+..++++.++..+.. +.+.++++.+|. +....+.++++.+...++ .+++.+.. +
T Consensus 79 ~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~ 156 (361)
T TIGR02091 79 LLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDH--IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRF 156 (361)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccc
Confidence 321 1 12457889999888853 235577778987 345578888887765543 33333331 1
Q ss_pred ceEEeCCCCcEEEecccc----ce-------eeccCCceeChHHHHHHHHhhhhCC---cc-cccHHHHHHhCCCCEEEE
Q 022657 201 TIKEANSESFVVRTLDRK----TL-------WEMQTPQVIKPDLLKKGFELVNREG---LE-VTDDVSIVEHLKHPVYIT 265 (294)
Q Consensus 201 ~~~~~~~~G~v~~~~~~~----~l-------~~~~tP~~f~~~~l~~~~~~~~~~g---~~-~td~~~~l~~~g~~v~~v 265 (294)
.+..++++|.+..+.++. .. +....-+.|+.+.+...+......+ .. .++....+... .+++.+
T Consensus 157 g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~-~~v~~~ 235 (361)
T TIGR02091 157 GVMQVDEDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEE-GSVQAY 235 (361)
T ss_pred cEEEECCCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhc-CceEEE
Confidence 133455567776665432 11 1222345677666555444322111 11 12322223222 367777
Q ss_pred ecCCceecCCCHHHHHHHHHHHhh
Q 022657 266 EGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 266 ~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
..+..|.||+||+||..|+..+..
T Consensus 236 ~~~~~w~digt~~~~~~a~~~~l~ 259 (361)
T TIGR02091 236 LFSGYWRDVGTIDSFWEANMDLVS 259 (361)
T ss_pred eeCCEEEECCCHHHHHHHHHHHhC
Confidence 667789999999999999776654
No 77
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.73 E-value=2.3e-16 Score=152.57 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=142.9
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-c--CCc--
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--NVD-- 136 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~--~~~-- 136 (294)
.++.|||||||.|+||+ .++||+|+|++|+ |||+|+++.+.++ ++++|+|++++.. +.+.++++. + +..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~-~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNS-ASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCH-HHHHHHHhccCCCCCCcc
Confidence 46889999999999996 5789999999997 9999999999986 8999999999975 556666543 1 100
Q ss_pred -----eEEeC--C-------CCcHHHHHHHHHHhcccC----CCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE--EEEE
Q 022657 137 -----LKFSL--P-------GKERQDSVYSGLQEVDFN----SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGV 196 (294)
Q Consensus 137 -----i~~v~--~-------~~~~~~sv~~al~~~~~~----~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~--i~~~ 196 (294)
+.+.. + ..+.+++++.++..+++. .+.+++..+|. +....+.++++.+.+.++. +++.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~--v~~~dl~~ll~~h~~~~a~~ti~~~ 157 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH--LYRMDYMDFVQKHRESGADITIACL 157 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe--EEccCHHHHHHHHHHcCCCEEEEEE
Confidence 22211 1 123467788777665431 25567778986 3456788999888776653 3333
Q ss_pred Ecc------cceEEeCCCCcEEEeccccc-------------------------eeeccCCceeChHHHHHHHHhhhhCC
Q 022657 197 PAK------ATIKEANSESFVVRTLDRKT-------------------------LWEMQTPQVIKPDLLKKGFELVNREG 245 (294)
Q Consensus 197 ~~~------~~~~~~~~~G~v~~~~~~~~-------------------------l~~~~tP~~f~~~~l~~~~~~~~~~g 245 (294)
++. ......+++|+|.++.++.. ......-++|+.+.+...++......
T Consensus 158 ~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~ 237 (436)
T PLN02241 158 PVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTA 237 (436)
T ss_pred ecchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccc
Confidence 332 12234466677776654321 01111234666666655544322111
Q ss_pred -cccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhh
Q 022657 246 -LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 246 -~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
....|....+...|.+++.+..+..|.||++|+||..++..+..
T Consensus 238 ~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~ 282 (436)
T PLN02241 238 NDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTK 282 (436)
T ss_pred cchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhc
Confidence 11233334445556788888777899999999999999877653
No 78
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.70 E-value=1.4e-15 Score=132.37 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=126.4
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeCC-
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP- 142 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~~- 142 (294)
|||||||.|+||+ ..+||+|++++|+|||+|+++.+... ++++|+|++++.. +.+.+++.. ++..+.++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~ 78 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQE 78 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCH-HHHHHHHcChhhcCceEEEEeCC
Confidence 6899999999996 35799999999999999999999986 6999999999864 455555543 2345555533
Q ss_pred -CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEccc----ceEEeCCCCcEEEec
Q 022657 143 -GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA----TIKEANSESFVVRTL 215 (294)
Q Consensus 143 -~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~----~~~~~~~~G~v~~~~ 215 (294)
..+..++++.++..+. .+.++++.+|.. + ...+.++++.+...++ .+++.+..+ .....+++|.|..+.
T Consensus 79 ~~~g~~~al~~~~~~~~--~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ 154 (217)
T cd04181 79 EPLGTAGAVRNAEDFLG--DDDFLVVNGDVL-T-DLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFV 154 (217)
T ss_pred CCCccHHHHHHhhhhcC--CCCEEEEECCee-c-CcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEE
Confidence 2456899999999883 356778889874 3 4457777776665443 344444322 223456567777665
Q ss_pred cccc----eeeccCCceeChHHHHHHHHhhhhCC-cccccHHHHHHhCCCCEEEEecCCceecCC
Q 022657 216 DRKT----LWEMQTPQVIKPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVT 275 (294)
Q Consensus 216 ~~~~----l~~~~tP~~f~~~~l~~~~~~~~~~g-~~~td~~~~l~~~g~~v~~v~~~~~~idVd 275 (294)
++.. ......-+.|+.+.+ +.+.....++ ...++....+... .++..++.+..|.||+
T Consensus 155 ek~~~~~~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~dig 217 (217)
T cd04181 155 EKPTLPESNLANAGIYIFEPEIL-DYIPEILPRGEDELTDAIPLLIEE-GKVYGYPVDGYWLDIG 217 (217)
T ss_pred ECCCCCCCCEEEEEEEEECHHHH-HhhhhcCCcccccHHHHHHHHHhc-CCEEEEEcCCEEecCC
Confidence 5321 111112245665443 3333221111 2333333333333 5788888878899985
No 79
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.70 E-value=6.7e-16 Score=133.87 Aligned_cols=177 Identities=19% Similarity=0.213 Sum_probs=118.8
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCc-----e
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVD-----L 137 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~-----i 137 (294)
|||||||.|+||. .+.||+|+|++|+ |||+|+++.+.++ ++++|+||+++.. +.+.+++.. ++.+ +
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCCh-HHHHHHHhCCCcccCCCCCCCE
Confidence 5899999999995 3589999999998 9999999999986 8999999999985 445555532 1111 3
Q ss_pred EEeC--------CCCcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCC
Q 022657 138 KFSL--------PGKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSE 208 (294)
Q Consensus 138 ~~v~--------~~~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~ 208 (294)
.++. ...+.+++++.|...+.. +.+.++++.+|+ +....+.++++.+.+.++.+++.- . ++ .
T Consensus 79 ~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~~~~t~~~-~-----~~-~ 149 (200)
T cd02508 79 FILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESGADITVVY-K-----AS-M 149 (200)
T ss_pred EEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEE-h-----hc-C
Confidence 3332 123458899999988852 236677888987 566789999998766554332111 1 11 1
Q ss_pred CcEEEeccccceeeccCCceeChHHHHHHHHhhhhC-C-cccccHHHHHHhCCCCEEEEecCCceecC
Q 022657 209 SFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE-G-LEVTDDVSIVEHLKHPVYITEGSYTNIKV 274 (294)
Q Consensus 209 G~v~~~~~~~~l~~~~tP~~f~~~~l~~~~~~~~~~-g-~~~td~~~~l~~~g~~v~~v~~~~~~idV 274 (294)
.+++|+.+.+...++..... + ...+|....+... .++..++.+..|+||
T Consensus 150 ----------------g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 150 ----------------GIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred ----------------EEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEEEeCCeEecC
Confidence 35677766554444332212 2 4455655555444 477777777789886
No 80
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.69 E-value=1.8e-15 Score=137.76 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=89.2
Q ss_pred eEEEEeCCCCCCCC----CCCCceeeeeCC-eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe--C
Q 022657 69 SVILLAGGRGKRMG----ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--L 141 (294)
Q Consensus 69 ~aIILAaG~gsRmg----~~~pK~Ll~l~G-kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v--~ 141 (294)
.+||||||.||||. ..+||+|++++| +|||+++++++...+++++|+|||++...+.+++.++.....+.++ .
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep 81 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEP 81 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECC
Confidence 68999999999994 368999999998 9999999999998655899999999865555666655422234444 2
Q ss_pred CCCcHHHHHHHHHHhccc--CCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 142 PGKERQDSVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~--~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
...+...++..|...+.. ..+.++++.+|+++.+...+.++++.+
T Consensus 82 ~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 128 (274)
T cd02509 82 EGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKA 128 (274)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHH
Confidence 344568888888777642 246788899999987777777776543
No 81
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.64 E-value=1.7e-14 Score=130.62 Aligned_cols=213 Identities=14% Similarity=0.185 Sum_probs=139.5
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc----CCceE
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI----NVDLK 138 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~----~~~i~ 138 (294)
.+++||||.||.|||+. .++|||++|++++|||.|.++++..+ +|++|++.+++.......+..+.| |+++.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEEE
Confidence 46899999999999985 56899999999999999999999987 899999999998643444444444 43444
Q ss_pred EeCCC-----CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc----eEEeCC
Q 022657 139 FSLPG-----KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANS 207 (294)
Q Consensus 139 ~v~~~-----~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~----~~~~~~ 207 (294)
+..+. +++.+.++.-|...+ +. -++++.+|. +-.=.++++++.+..+++ .+++.++.++ ++..++
T Consensus 87 ~s~eteplgtaGpl~laR~~L~~~~-~~-~ffVLnsDv--i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~ 162 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLALARDFLWVFE-DA-PFFVLNSDV--ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDE 162 (371)
T ss_pred EEeccCCCcccchHHHHHHHhhhcC-CC-cEEEecCCe--eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEec
Confidence 43322 233444444443322 11 456666653 222336899999887755 5677777664 344565
Q ss_pred -CCcEEEeccccceee----ccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHH
Q 022657 208 -ESFVVRTLDRKTLWE----MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLI 282 (294)
Q Consensus 208 -~G~v~~~~~~~~l~~----~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ 282 (294)
.|+|.++.++...+. ...-++|..+.|.+..... -.+..+..-....+++++.+.-++.|.||++|.||..
T Consensus 163 ~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~p----tSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~ 238 (371)
T KOG1322|consen 163 DTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRP----TSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLT 238 (371)
T ss_pred CCCceeEehhCchhhhhccccceEEEECHHHHhHhhhcc----cchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHH
Confidence 788998887654221 1234567777666544221 1112221111234667888888889999999999987
Q ss_pred HHHHH
Q 022657 283 AERIL 287 (294)
Q Consensus 283 ae~~l 287 (294)
+-.+.
T Consensus 239 g~~~Y 243 (371)
T KOG1322|consen 239 GFSFY 243 (371)
T ss_pred HHHHH
Confidence 75443
No 82
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=2.5e-13 Score=120.89 Aligned_cols=216 Identities=18% Similarity=0.205 Sum_probs=138.0
Q ss_pred CceeEEEEeCCCCCCC---CCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHH----------HHHhh
Q 022657 66 KSVSVILLAGGRGKRM---GANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFE----------ETKEK 132 (294)
Q Consensus 66 ~~i~aIILAaG~gsRm---g~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~----------~~~~~ 132 (294)
+-.+|||+|||.|||| ...+||-|+||-+||+|+|+++.+.++ ||++|++||+.... .++ ..+.+
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~-~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKR-AIEDHFDTSYELENTLEK 80 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcc-hHHHhCcCcHHHHHHHHH
Confidence 4467999999999999 356899999999999999999999986 89999999997642 112 11211
Q ss_pred ------------c--CCceEEeCCCC--cHHHHHHHHHHhcccCCCeEEEecCCCCCCC-HHHHHHHHHHHHhcCcEEEE
Q 022657 133 ------------I--NVDLKFSLPGK--ERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGAAVLG 195 (294)
Q Consensus 133 ------------~--~~~i~~v~~~~--~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~-~~~i~~ll~~~~~~~~~i~~ 195 (294)
. ..++.++.+.. +.++++++|-.++.+ +.+.+..+|.-..+ ...+.++++.+.+.++.+++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~--EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~ 158 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGD--EPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIG 158 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCC--CceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEE
Confidence 1 12455665433 468999999999974 34444456644443 56889999999988776555
Q ss_pred EE-c--ccc--eEEeC-----CCC--cEEEeccc-------cceeeccCCceeChHHHHHHHHhhh--hCC-cccccHHH
Q 022657 196 VP-A--KAT--IKEAN-----SES--FVVRTLDR-------KTLWEMQTPQVIKPDLLKKGFELVN--REG-LEVTDDVS 253 (294)
Q Consensus 196 ~~-~--~~~--~~~~~-----~~G--~v~~~~~~-------~~l~~~~tP~~f~~~~l~~~~~~~~--~~g-~~~td~~~ 253 (294)
+. + .+. +..++ ++| .|...+++ +++.. ..-++++.+. ...++... ..| ..+||...
T Consensus 159 v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai-~GRYil~p~I-Fd~L~~~~~G~ggEiQLTDai~ 236 (291)
T COG1210 159 VEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAI-VGRYVLTPEI-FDILEETKPGAGGEIQLTDAIK 236 (291)
T ss_pred EEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceee-eeeeecCHHH-HHHHhhCCCCCCCEeeHHHHHH
Confidence 43 3 121 11111 122 23444443 33322 1123445432 22333322 223 67888765
Q ss_pred HHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 254 IVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 254 ~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
.+... ..++.+...+..+|++++..|-.+.--+.
T Consensus 237 ~L~~~-~~v~a~~~~GkryD~G~k~Gyi~a~v~~~ 270 (291)
T COG1210 237 KLLKK-EPVLAYVFEGKRYDCGSKLGYIKANVEFA 270 (291)
T ss_pred HHHhh-CcEEEEEecccEEccCCcccHHHHHHHHH
Confidence 55443 56676777778899999999988754444
No 83
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.58 E-value=1.9e-13 Score=133.28 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=84.8
Q ss_pred eeEEEEeCCCCCCCC----CCCCceeeeeCC-eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCc-eEEeC
Q 022657 68 VSVILLAGGRGKRMG----ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD-LKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg----~~~pK~Ll~l~G-kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~-i~~v~ 141 (294)
+.+||||||.||||. ..+||+|+++.| +|||+|+++++... ++++++|||+....+.+++.+..++.+ ..++.
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~ 79 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLREIGKLASNIIL 79 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEe
Confidence 468999999999996 347999999966 89999999999886 689999999976544556666665432 22332
Q ss_pred --CCCcHHHHHHHHHHhcc---cCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 142 --PGKERQDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~---~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
...+.+.++..|...+. ...++++++.+|+++..++.+.++++.+
T Consensus 80 Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 80 EPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred cccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 22234555554444441 1245788889999988777888887764
No 84
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.55 E-value=5.4e-14 Score=123.33 Aligned_cols=120 Identities=17% Similarity=0.272 Sum_probs=89.8
Q ss_pred eeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC------CceE
Q 022657 68 VSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLK 138 (294)
Q Consensus 68 i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~------~~i~ 138 (294)
+.|||||||.|+||+ ...||+|+|++|+|||+|+++.+.+. ++++|+||+++...+.+++.++.+. ..+.
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~ 79 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEV 79 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCcceeEE
Confidence 368999999999996 45899999999999999999999985 7999999999765455666665431 1222
Q ss_pred EeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 139 FSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 139 ~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
+.. ...+.+++++.+...+. .+ ++++.+| ++....+..+++.+...++.+
T Consensus 80 ~~~~~~~~gt~~al~~~~~~i~--~d-~lv~~~D--~i~~~~l~~~l~~h~~~~~~~ 131 (214)
T cd04198 80 TIVLDEDMGTADSLRHIRKKIK--KD-FLVLSCD--LITDLPLIELVDLHRSHDASL 131 (214)
T ss_pred EecCCCCcChHHHHHHHHhhcC--CC-EEEEeCc--cccccCHHHHHHHHhccCCcE
Confidence 222 23346888999988774 34 5566787 577788899999887665543
No 85
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=5.1e-14 Score=118.70 Aligned_cols=202 Identities=19% Similarity=0.190 Sum_probs=118.3
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCC-
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK- 144 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~- 144 (294)
.|||||||.|||+. ..+||+|+.|.|+|||++.|+.|+++ +|++|+||||+-. ++++-..++|+ +.++.++.
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlk-E~FeYLkdKy~--vtLvyN~kY 77 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLK-EQFEYLKDKYD--VTLVYNPKY 77 (231)
T ss_pred ceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehH-HHHHHHHHhcC--eEEEeCchH
Confidence 58999999999994 56799999999999999999999996 8999999999984 77766666775 55554332
Q ss_pred ---cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEE---c-ccceEEeCCCCcEEEec-c
Q 022657 145 ---ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP---A-KATIKEANSESFVVRTL-D 216 (294)
Q Consensus 145 ---~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~---~-~~~~~~~~~~G~v~~~~-~ 216 (294)
+...|+..|...+.+ . .++|+|.- ++...+..=. ..+--.++- . .+.....+++|+|++.. .
T Consensus 78 ~~yNn~ySlyla~d~l~n--t--YiidsDny-l~kNif~~~~-----~~S~Yfav~~~~~tnEw~l~~~~~~ki~~v~Ig 147 (231)
T COG4750 78 REYNNIYSLYLARDFLNN--T--YIIDSDNY-LTKNIFLTKE-----SHSKYFAVYRSGKTNEWLLIYNSDGKITRVDIG 147 (231)
T ss_pred HhhhhHHHHHHHHHHhcc--c--EEeccchH-hhhhhhhcCc-----ccceEEEEEecCCCceeEEEEcCCCcEEEEEec
Confidence 347889999988863 2 45688743 3333222111 111111111 1 12222336678887542 3
Q ss_pred ccceeeccCCceeChHH-------HHHHHHhhhhCCcccccHHHHHHhC-CCCEEEEecC-CceecCCCHHHHHHHHHH
Q 022657 217 RKTLWEMQTPQVIKPDL-------LKKGFELVNREGLEVTDDVSIVEHL-KHPVYITEGS-YTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 217 ~~~l~~~~tP~~f~~~~-------l~~~~~~~~~~g~~~td~~~~l~~~-g~~v~~v~~~-~~~idVdTpeDL~~ae~~ 286 (294)
..+-+.+..+..|+... +..++.... ....++|.. .++.. ...+++-.-+ ..-+++|..+||..++.-
T Consensus 148 g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e-~~k~yWd~v-~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~ 224 (231)
T COG4750 148 GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLE-NRKLYWDTV-PMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQK 224 (231)
T ss_pred CcccceEeeeeeecchhHHHHHHHHHHHHhCch-hhhHHHHHH-HHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhh
Confidence 33323333444555432 222221111 111222321 12221 1223332222 336789999999988763
No 86
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=8.9e-13 Score=113.68 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=94.3
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCch-HHHHHHHhhcCCceEEeCCCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~-~~~~~~~~~~~~~i~~v~~~~ 144 (294)
++|.+||-|+-.|||+.+ |.|+|++|+|||++++++++.++.+++|+|.|..... +.+++.+...|. .+..+..
T Consensus 2 ~~I~~IiQARmgStRLpg---KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~--~vfrGs~ 76 (241)
T COG1861 2 SMILVIIQARMGSTRLPG---KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGF--YVFRGSE 76 (241)
T ss_pred CcEEEEeeecccCccCCc---chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCe--eEecCCH
Confidence 678999999999999998 9999999999999999999999889999999987654 456777766663 3334333
Q ss_pred cH-HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 145 ER-QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 145 ~~-~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
.. .+-...++.+.+ .+.|+=+.+|.||++++.++.+++.+-+.|+
T Consensus 77 ~dVL~Rf~~a~~a~~--~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ga 122 (241)
T COG1861 77 EDVLQRFIIAIKAYS--ADVVVRVTGDNPFLDPELVDAAVDRHLEKGA 122 (241)
T ss_pred HHHHHHHHHHHHhcC--CCeEEEeeCCCCCCCHHHHHHHHHHHHhcCC
Confidence 22 444555666655 4566668899999999999999998877664
No 87
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.52 E-value=9.3e-13 Score=112.21 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=102.4
Q ss_pred CCCCCCceeeeeCC--eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC---CCCcHHHHHHHHHH
Q 022657 81 MGANMPKQYLPLLG--QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---PGKERQDSVYSGLQ 155 (294)
Q Consensus 81 mg~~~pK~Ll~l~G--kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~---~~~~~~~sv~~al~ 155 (294)
||. +|+|++++| +|||+|+++.+.. .+++|+||++... . + ..++. .++. .+.++..++..|+.
T Consensus 1 mG~--dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~-~-~----~~~~~--~~i~d~~~g~gpl~~~~~gl~ 68 (178)
T PRK00576 1 MGR--DKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ-P-L----PELPA--PVLRDELRGLGPLPATGRGLR 68 (178)
T ss_pred CCC--CCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc-c-c----ccCCC--CEeccCCCCCCcHHHHHHHHH
Confidence 454 799999999 9999999998874 6899999998652 1 1 11222 2222 34456777777776
Q ss_pred hc-ccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCC--ceeChH
Q 022657 156 EV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTP--QVIKPD 232 (294)
Q Consensus 156 ~~-~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP--~~f~~~ 232 (294)
.+ ....++++++.||+|++++++++++++.+...+..+. .+. +|+. .| ..|+.+
T Consensus 69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~-~~~---------~g~~-------------~pl~~~~~~~ 125 (178)
T PRK00576 69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTDAEVV-LPW---------DGRD-------------HYLAAVYRTD 125 (178)
T ss_pred HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCCcEE-Eec---------CCCc-------------CcEEEEehHH
Confidence 54 2235899999999999999999999997654443222 211 1211 23 456655
Q ss_pred HHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 233 LLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 233 ~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
.+....+....... ....+++..+.....+..+..++|||||+||+.+-
T Consensus 126 l~~~l~~~~~~g~~---~~~~~l~~~~~~~v~~~~~~~f~ninTped~~~~~ 174 (178)
T PRK00576 126 LAERVDALVGAGER---SMRALVDASDAQRIVMPESRPLTNVNTAADLPAPM 174 (178)
T ss_pred HHHHHHHHHHcCCc---cHHHHHHhCCceEecCCCCCccccCCCHHHHHHhc
Confidence 33332222211111 12345655443222333345578999999997763
No 88
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.51 E-value=3.6e-13 Score=117.82 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=86.4
Q ss_pred eEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCC-cHH
Q 022657 69 SVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQ 147 (294)
Q Consensus 69 ~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~ 147 (294)
.|||+|+|+|+|+.+ |+|++++|+|||+|++++++++..+++|+|+|+.+. +.+.+.+++..+.+..+.. ...
T Consensus 1 iaiIpAR~gS~rlp~---Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~---i~~~~~~~g~~v~~~~~~~~~~~ 74 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG---KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE---IDDIAEEYGAKVIFRRGSLADDT 74 (217)
T ss_dssp EEEEEE-SSSSSSTT---GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH---HHHHHHHTTSEEEE--TTSSSHH
T ss_pred CEEEecCCCCCCCCc---chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH---HHHHHHHcCCeeEEcChhhcCCc
Confidence 389999999999998 999999999999999999999989999999999853 3456677776665444332 223
Q ss_pred HHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 148 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 148 ~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
+....++..... +.+.++...+|.||+++..+.++++.+.+..
T Consensus 75 ~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~ 118 (217)
T PF02348_consen 75 DRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN 118 (217)
T ss_dssp HHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred ccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence 334444444432 2347888889999999999999999987754
No 89
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.46 E-value=2.3e-12 Score=113.18 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=80.3
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC--------Cce
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--------VDL 137 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~--------~~i 137 (294)
.|||||||.|+||+ ..+||+|+|++|+|||+|+++.+.++ ++++|+|++++.. +.++++++... ..+
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~i 79 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHS-DQIKEYIEKSKWSKPKSSLMIV 79 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCH-HHHHHHHhhccccccccCcceE
Confidence 68999999999997 56899999999999999999999986 8999999999864 56677765431 234
Q ss_pred EEeCCC--CcHHHHHHHH--HHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh
Q 022657 138 KFSLPG--KERQDSVYSG--LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 138 ~~v~~~--~~~~~sv~~a--l~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
.++.+. .+.+++++.. ...+. .+ ++++.+|. +....+.++++.+.+
T Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~--~~-flv~~gD~--i~~~dl~~~l~~h~~ 129 (217)
T cd04197 80 IIIMSEDCRSLGDALRDLDAKGLIR--GD-FILVSGDV--VSNIDLKEILEEHKE 129 (217)
T ss_pred EEEeCCCcCccchHHHHHhhccccC--CC-EEEEeCCe--eeccCHHHHHHHHHH
Confidence 444322 1224444322 22222 23 55667874 445678899988765
No 90
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.35 E-value=1.4e-10 Score=112.96 Aligned_cols=122 Identities=16% Similarity=0.287 Sum_probs=85.0
Q ss_pred cCCceeEEEEeCCCCCCCC----CCCCceeeeeC-CeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCC---
Q 022657 64 KDKSVSVILLAGGRGKRMG----ANMPKQYLPLL-GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV--- 135 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg----~~~pK~Ll~l~-GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~--- 135 (294)
..|++.+||||||.||||- ...||+|+++. ++|||+++++++... ++.+.+|||+..+.+.+++.+...+.
T Consensus 2 ~~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~~~~~~ 80 (478)
T PRK15460 2 AQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQLNKLTE 80 (478)
T ss_pred CCCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhcCCccc
Confidence 3467899999999999994 34699999995 479999999999875 56777788998776777776665541
Q ss_pred ceEEeCCCCcHHHHHHHHHHhcc-c--C-CCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 136 DLKFSLPGKERQDSVYSGLQEVD-F--N-SELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 136 ~i~~v~~~~~~~~sv~~al~~~~-~--~-~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
++.+-+-+.+.+.++..|...+. . + ...++++.+|+-+-+.+.+.+.++..
T Consensus 81 ~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A 135 (478)
T PRK15460 81 NIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNA 135 (478)
T ss_pred cEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHH
Confidence 33333344455666554433332 1 1 35788899997666666666666544
No 91
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=1.2e-10 Score=105.96 Aligned_cols=120 Identities=20% Similarity=0.317 Sum_probs=87.1
Q ss_pred eeEEEEeCCCCCCC----CCCCCceeeee-CCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCc----eE
Q 022657 68 VSVILLAGGRGKRM----GANMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD----LK 138 (294)
Q Consensus 68 i~aIILAaG~gsRm----g~~~pK~Ll~l-~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~----i~ 138 (294)
+.+||||||.|||+ +..+|||++++ ++++|++.+++++......++++|||+.++...+.+.+...+.+ +.
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~il 81 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGII 81 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceE
Confidence 56899999999999 56789999999 56999999999999865688999999998776666666653322 22
Q ss_pred EeCCCCcHHHHHHHH-HHhcccCC-CeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 139 FSLPGKERQDSVYSG-LQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 139 ~v~~~~~~~~sv~~a-l~~~~~~~-~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
+.+-+.+.+.++..| +.....+. ..+++..+|+-.-+.+.+.+.++...
T Consensus 82 lEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~ 132 (333)
T COG0836 82 LEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAE 132 (333)
T ss_pred eccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHH
Confidence 223455556666544 44333322 36788889987777777777766554
No 92
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.31 E-value=1.8e-11 Score=107.50 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=79.7
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc------CCceEE
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI------NVDLKF 139 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~------~~~i~~ 139 (294)
.|||||||.|+||. ...||+|+|++|+|||+|+++.+.+. ++++|+|++++......+...+.+ +..+.+
T Consensus 2 ~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 2 QAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred eEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 68999999999996 36899999999999999999999986 799999999988644433333222 112222
Q ss_pred --eC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHH
Q 022657 140 --SL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 185 (294)
Q Consensus 140 --v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~ 185 (294)
.. ...+.+.+++.+...+. .+ ++++.+|. +....+..++++
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~--~d-flv~~gD~--i~~~~l~~~l~~ 125 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIR--SD-FLLLSCDL--VSNIPLSELLEE 125 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCC--CC-EEEEeCCE--eecCCHHHHHHH
Confidence 22 23345778888888774 34 45667873 556677888864
No 93
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=99.21 E-value=2.4e-10 Score=98.57 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=67.2
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe-CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCIHDSARPL 173 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v-~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pl 173 (294)
+|||+|+++.+... ++++++||++.+. ..+....++. .++ ..+.+..+++.+|++.+..+.++++++.+|+|+
T Consensus 30 ~~ll~~~l~~l~~~-~~~~vvvv~~~~~---~~~~~~~~~v--~~i~~~~~G~~~si~~al~~~~~~~~~vlv~~~D~P~ 103 (195)
T TIGR03552 30 LAMLRDVITALRGA-GAGAVLVVSPDPA---LLEAARNLGA--PVLRDPGPGLNNALNAALAEAREPGGAVLILMADLPL 103 (195)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCCHH---HHHHHHhcCC--EEEecCCCCHHHHHHHHHHHhhccCCeEEEEeCCCCC
Confidence 89999999999986 4688998888532 2333344443 333 333467999999998875445688999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 022657 174 VLSKDVQKVLMDALRVG 190 (294)
Q Consensus 174 i~~~~i~~ll~~~~~~~ 190 (294)
++++.++++++.+...+
T Consensus 104 l~~~~i~~l~~~~~~~~ 120 (195)
T TIGR03552 104 LTPRELKRLLAAATEGD 120 (195)
T ss_pred CCHHHHHHHHHhcccCC
Confidence 99999999999775433
No 94
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.7e-09 Score=101.21 Aligned_cols=217 Identities=20% Similarity=0.205 Sum_probs=146.4
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCee-hHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCC-----
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQP-IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV----- 135 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gkp-Ll~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~----- 135 (294)
.++-|+|||||+|+|+. ..++||-+|++|+- +|+-.+..+..+ ++++|.|.|.+.... +.++++. +.-
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~S-L~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHS-LNDHIGRGWPWDLDRK 81 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhH-HHHHhhCCCccccccc
Confidence 56889999999999996 56899999999975 999999999986 899999999998754 3344432 111
Q ss_pred --ceEEeCC-----CC----cHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE--EEEEEccc-
Q 022657 136 --DLKFSLP-----GK----ERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA- 200 (294)
Q Consensus 136 --~i~~v~~-----~~----~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~--i~~~~~~~- 200 (294)
-+.+..+ +. +.+++++.-+..+. .+.+.+++..+|+-+ .-+++++++.+.+.++. +.+.++..
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIY--kmDy~~ml~~H~~~gadiTv~~~~Vp~~ 159 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIY--KMDYSDMLDFHIESGADVTVAVKEVPRE 159 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEE--ecCHHHHHHHHHHcCCCEEEEEEECChH
Confidence 1222221 11 24777877776664 346889999998643 56789999998877664 44455422
Q ss_pred -----ceEEeCCCCcEEEeccccce------eeccCCceeChHHHHHHHHhhhhCCcccccH-HHHH---HhCCCCEEEE
Q 022657 201 -----TIKEANSESFVVRTLDRKTL------WEMQTPQVIKPDLLKKGFELVNREGLEVTDD-VSIV---EHLKHPVYIT 265 (294)
Q Consensus 201 -----~~~~~~~~G~v~~~~~~~~l------~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~-~~~l---~~~g~~v~~v 265 (294)
.+..+|++|+|..+.++..- ..--.-++|+.+.|.+.++...+.+....|. ..++ .+.|. +...
T Consensus 160 eas~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~-v~AY 238 (393)
T COG0448 160 EASRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGK-VYAY 238 (393)
T ss_pred hhhhcCceEECCCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCC-EEEE
Confidence 35567889999887654322 1111236788888888887554321111121 1222 23333 7777
Q ss_pred ecCCceecCCCHHHHHHHHHHH
Q 022657 266 EGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 266 ~~~~~~idVdTpeDL~~ae~~l 287 (294)
+.+..|.||+|.+.|-.|.-=|
T Consensus 239 ~f~gYw~dVgTi~syy~aNmdL 260 (393)
T COG0448 239 EFSGYWRDVGTIDSYYEANMDL 260 (393)
T ss_pred eccchhhhcccHHHHHHhhHHh
Confidence 8888999999999998886443
No 95
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.2e-10 Score=98.90 Aligned_cols=124 Identities=19% Similarity=0.303 Sum_probs=85.7
Q ss_pred CceeEEEEeCC--CCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHH----hhcCCc
Q 022657 66 KSVSVILLAGG--RGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK----EKINVD 136 (294)
Q Consensus 66 ~~i~aIILAaG--~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~----~~~~~~ 136 (294)
|+++||||.|| +||||+ -+.||||.|++|+|||+|-|+++++.++..+|.++.-+++ +.+.+.+ +.+...
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e-~~f~~fis~~~~e~~~p 79 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE-RVFTDFISAIQQEFKVP 79 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccc-hHHHHHHHHHHhhcccc
Confidence 57899999998 789996 5789999999999999999999999999999999987775 4444433 334445
Q ss_pred eEEeCC--CCcHHHHHHHHHHhc-ccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE
Q 022657 137 LKFSLP--GKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA 192 (294)
Q Consensus 137 i~~v~~--~~~~~~sv~~al~~~-~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~ 192 (294)
+++... .-+.+.++++--..+ ..+.+.|++.++|--- .--++++++++..+++.
T Consensus 80 vrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCc--sfPl~~ml~ahr~~g~~ 136 (407)
T KOG1460|consen 80 VRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCC--SFPLQDMLEAHRRYGGI 136 (407)
T ss_pred hhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceec--CCcHHHHHHHHhhcCCc
Confidence 565532 223345565554443 2234556665555211 11268899988777654
No 96
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.1e-10 Score=102.68 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=86.7
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh-hcCCc-----
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVD----- 136 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~-~~~~~----- 136 (294)
+...+||+|||.||||. ...||+|+||+++|||+|.+.-|.++ ++.+|+||+..++.+.++..+. .+..+
T Consensus 8 ~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~ 86 (433)
T KOG1462|consen 8 SEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSNIDLKKRPDY 86 (433)
T ss_pred HHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcCCcccccccE
Confidence 45779999999999995 56899999999999999999999997 8999999999866555666653 22211
Q ss_pred eEEeC-C--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 137 LKFSL-P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 137 i~~v~-~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
+.+.. + .-+.+++++.--..+.. .| ++++.|| |++.-.+..+++.|...++
T Consensus 87 v~ip~~~~~d~gtadsLr~Iy~kikS-~D-flvlsCD--~Vtdv~l~~lvd~FR~~d~ 140 (433)
T KOG1462|consen 87 VEIPTDDNSDFGTADSLRYIYSKIKS-ED-FLVLSCD--FVTDVPLQPLVDKFRATDA 140 (433)
T ss_pred EEeecccccccCCHHHHhhhhhhhcc-CC-EEEEecc--cccCCCcHHHHHHHhccCh
Confidence 22211 1 23457777766666653 24 4555674 5666677888888876554
No 97
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.63 E-value=4.4e-08 Score=88.92 Aligned_cols=66 Identities=29% Similarity=0.313 Sum_probs=50.6
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHhcc-------CCCCeEEEEcCCCchHHHHHHHhhcC
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLL---GQPIALYSFYTFSRM-------VEVKEIVVVCDPSYSDIFEETKEKIN 134 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~---GkpLl~~~i~~l~~~-------~~i~~IvVv~~~~~~~~~~~~~~~~~ 134 (294)
+.+||||||.|||||.+.||++++++ |+|++++.+++++.. ..|..+++ +.+...+.+.++++++.
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~im-ts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLM-NSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCchhHHHHHHHHHHcC
Confidence 46899999999999988999999999 999999999999863 23555554 44443455666666543
No 98
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.44 E-value=4.1e-07 Score=84.75 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=52.8
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHhccCCC----------CeEEEEcCCCchHHHHHHH
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLL---GQPIALYSFYTFSRMVEV----------KEIVVVCDPSYSDIFEETK 130 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~---GkpLl~~~i~~l~~~~~i----------~~IvVv~~~~~~~~~~~~~ 130 (294)
+..++.+||||||+|||||.+.||++++++ |+|++++.++.++..... -.++|.|+....+.+.+++
T Consensus 12 ~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~ 91 (323)
T cd04193 12 AEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFF 91 (323)
T ss_pred hcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHH
Confidence 446789999999999999988899999997 799999999999874211 1456777744345556665
Q ss_pred hh
Q 022657 131 EK 132 (294)
Q Consensus 131 ~~ 132 (294)
+.
T Consensus 92 ~~ 93 (323)
T cd04193 92 KE 93 (323)
T ss_pred Hh
Confidence 53
No 99
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.36 E-value=1e-06 Score=85.97 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=53.0
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeee---CCeehHHHHHHHHhccC------------CCCeEEEEcCCCchHHHHH
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPL---LGQPIALYSFYTFSRMV------------EVKEIVVVCDPSYSDIFEE 128 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l---~GkpLl~~~i~~l~~~~------------~i~~IvVv~~~~~~~~~~~ 128 (294)
+..++.+||||||.|||||.+.||+|++| .|+|++++.++++.... ..-.++|.|.....+.+.+
T Consensus 103 ~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~ 182 (482)
T PTZ00339 103 KKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQ 182 (482)
T ss_pred hcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHH
Confidence 45679999999999999998899999999 48999999999998641 1124666666554455666
Q ss_pred HHhh
Q 022657 129 TKEK 132 (294)
Q Consensus 129 ~~~~ 132 (294)
+++.
T Consensus 183 ~f~~ 186 (482)
T PTZ00339 183 FLEE 186 (482)
T ss_pred HHHh
Confidence 6653
No 100
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=98.02 E-value=1.1e-05 Score=70.80 Aligned_cols=178 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred eEEEEeCCCC---CCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh-hcCCceEEeCCCC
Q 022657 69 SVILLAGGRG---KRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGK 144 (294)
Q Consensus 69 ~aIILAaG~g---sRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~-~~~~~i~~v~~~~ 144 (294)
.+||+-...+ ||+....+-.-..=--+-|+..++.++.. ++ |+||+..... ..... .++..+. ..++.
T Consensus 2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La~aMl~Dvl~al~~---v~-v~vVs~d~~v---~~~a~~~~g~~vl-~d~~~ 73 (217)
T PF01983_consen 2 RAVIPVKPLARAKSRLSPVLSPEEREALALAMLRDVLAALRA---VD-VVVVSRDPEV---AALARARLGAEVL-PDPGR 73 (217)
T ss_dssp EEEEE---TT-TTGGGTTTS-HHHHHHHHHHHHHHHHHHHHH----S-EEEEES--S----TTTTT---SSEEE-E---S
T ss_pred eEEEEcCCCCccccccCccCCHHHHHHHHHHHHHHHHHHHHh---cC-eEEeccchhh---hhhhhhccCCeEe-cCCCC
Confidence 4667666544 56653111100000114689999999975 67 8777765432 11222 3454332 22345
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
+...++..|+.... .+-++++.+|.|+++++.++.++....+.+ +++.|... +| .|.....
T Consensus 74 gLN~Al~~a~~~~~--~~~vlvl~aDLPll~~~dl~~~l~~~~~~~--vviap~r~-------gG--------TN~L~~~ 134 (217)
T PF01983_consen 74 GLNAALNAALAAAG--DDPVLVLPADLPLLTPEDLDALLAAAGRAD--VVIAPDRG-------GG--------TNALLLR 134 (217)
T ss_dssp -HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS--S--EEEEE-GG-------G---------EEEEEES
T ss_pred CHHHHHHHHHhccC--CCceEEeecCCccCCHHHHHHHHhccCCCC--EEEeCCCC-------CC--------eEEEEec
Confidence 66777777743332 456778889999999999999998754333 33444322 12 1111111
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
|..|... | .+..+..-...-+..|..+.++.......|||||+||..+-
T Consensus 135 -~~~~~~~-----f-----g~~S~~~H~~~A~~~gl~~~v~~s~~l~~DVDtp~DL~ell 183 (217)
T PF01983_consen 135 -PDAFPFR-----F-----GGGSFARHLRAARERGLSVAVVDSFRLALDVDTPEDLAELL 183 (217)
T ss_dssp -CCC---------------SSSHHHHHHHHHHCTT--EEE---TTTT----SCCHHHHHH
T ss_pred -CCCCCCC-----c-----ChhHHHHHHHHHHHCCCeEEEEccCceeecCCCHHHHHHHH
Confidence 3333321 0 00111111122234566677777767789999999998653
No 101
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=97.91 E-value=0.00053 Score=58.50 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=57.4
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 174 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli 174 (294)
.-||..++.++..+ +.+|.||+..++.. ... .+.++..+ .....++.+++..+... +-++++.+|.|++
T Consensus 31 laML~dvi~Al~~~--~~~i~Vvtpde~~~--~~a-----~~~~vl~d-~dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl 99 (210)
T COG1920 31 LAMLVDVLGALAGV--LGEITVVTPDEEVL--VPA-----TKLEVLAD-PDLNTAINAALDEIPLP-SEVIVVMADLPLL 99 (210)
T ss_pred HHHHHHHHHHhhhh--cCCceEEcCChHhh--hhc-----ccceeeec-cchHHHHHHHHhhCCCC-cceEEEecccccC
Confidence 35899999999753 78999998865421 111 11122222 22567788888887643 3355667999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 022657 175 LSKDVQKVLMDALRVG 190 (294)
Q Consensus 175 ~~~~i~~ll~~~~~~~ 190 (294)
+++.|+++++..+..+
T Consensus 100 ~~~~i~~~~~~~~d~d 115 (210)
T COG1920 100 SPEHIERALSAAKDAD 115 (210)
T ss_pred CHHHHHHHHHhcCCCc
Confidence 9999999999865533
No 102
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.73 E-value=8.9e-05 Score=68.33 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=52.1
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeee-CCeehHHHHHHHHhccC---CCC-eEEEEcCCCchHHHHHHHhhcC
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPL-LGQPIALYSFYTFSRMV---EVK-EIVVVCDPSYSDIFEETKEKIN 134 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l-~GkpLl~~~i~~l~~~~---~i~-~IvVv~~~~~~~~~~~~~~~~~ 134 (294)
++.+|+||||.|||||.+.||.++++ .|+++++..+++++... +++ ..+|-|++...+...+++++++
T Consensus 3 kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~ 75 (300)
T cd00897 3 KLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA 75 (300)
T ss_pred cEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC
Confidence 57899999999999998889999999 68999999998886431 222 4667677665555666666553
No 103
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.62 E-value=0.00017 Score=66.78 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=49.3
Q ss_pred eEEEEeCCCCCCCCCCCCceeeee---CCeehHHHHHHHHhccC-------CC-CeEEEEcCCCchHHHHHHHhh
Q 022657 69 SVILLAGGRGKRMGANMPKQYLPL---LGQPIALYSFYTFSRMV-------EV-KEIVVVCDPSYSDIFEETKEK 132 (294)
Q Consensus 69 ~aIILAaG~gsRmg~~~pK~Ll~l---~GkpLl~~~i~~l~~~~-------~i-~~IvVv~~~~~~~~~~~~~~~ 132 (294)
.+|+||||+|||||.+-||-++++ .|+++++..+++++... ++ =.++|-|.....+...+.+++
T Consensus 2 a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 579999999999998889999998 59999999999886532 11 246777777655556666653
No 104
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0018 Score=64.09 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=81.2
Q ss_pred CCceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh--cC--C--
Q 022657 65 DKSVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--IN--V-- 135 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~--~~--~-- 135 (294)
+.+..||++|=-.-+||. ..+|+.|+|+.+.|||+|++.-|.++ ||.+++|.|.... .++.+++++ +. .
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~-~qi~e~i~~sew~~~~~~ 99 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHA-AQIIEYIEKSEWYLPMSF 99 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccH-HHHHHHHhhccccccccc
Confidence 577999999999999985 56899999999999999999999986 8999999998654 345556554 21 1
Q ss_pred ceEEeCCCCcHHHHHHHHHHhccc----CCCeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 136 DLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 136 ~i~~v~~~~~~~~sv~~al~~~~~----~~~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
.+..+..+. ..|+--+++.+++ ..|++|+ .+| -++--.+.++++.++
T Consensus 100 ~v~ti~s~~--~~S~GDamR~id~k~litgDFiLV-sgd--~vsN~pl~~~l~eHr 150 (673)
T KOG1461|consen 100 IVVTICSGE--SRSVGDAMRDIDEKQLITGDFILV-SGD--TVSNMPLRNVLEEHR 150 (673)
T ss_pred eEEEEcCCC--cCcHHHHHHHHHhcceeecceEEE-eCC--eeecCchHHHHHHHH
Confidence 233344442 2344455555542 2567666 353 344556788888774
No 105
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.29 E-value=0.00096 Score=64.95 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=51.6
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeee-CCeehHHHHHHHHhccC---CCC-eEEEEcCCCchHHHHHHHhhcC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPL-LGQPIALYSFYTFSRMV---EVK-EIVVVCDPSYSDIFEETKEKIN 134 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l-~GkpLl~~~i~~l~~~~---~i~-~IvVv~~~~~~~~~~~~~~~~~ 134 (294)
.++.+|+||||.|||||.+-||.++++ .|+++++..++++.... +++ ..+|-+.+...+...+++++++
T Consensus 78 ~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~ 151 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT 151 (469)
T ss_pred hcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC
Confidence 578899999999999998889999999 68999988888775431 332 3566666655455566666654
No 106
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.28 E-value=0.00062 Score=66.63 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=51.1
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeee---CCeehHHHHHHHHhccC-------------CCC-eEEEEcCCCchHHH
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPL---LGQPIALYSFYTFSRMV-------------EVK-EIVVVCDPSYSDIF 126 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l---~GkpLl~~~i~~l~~~~-------------~i~-~IvVv~~~~~~~~~ 126 (294)
+..++.+|+||||+|||||.+.||.+.+| .|+++++..++++.... ++. .++|-|.....+..
T Consensus 113 ~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T 192 (493)
T PLN02435 113 SEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEAT 192 (493)
T ss_pred hcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHH
Confidence 34679999999999999998899999977 48999999998874321 111 35777776655555
Q ss_pred HHHHhh
Q 022657 127 EETKEK 132 (294)
Q Consensus 127 ~~~~~~ 132 (294)
.+.+++
T Consensus 193 ~~ff~~ 198 (493)
T PLN02435 193 RKFFES 198 (493)
T ss_pred HHHHHh
Confidence 666654
No 107
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.19 E-value=0.00078 Score=65.02 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=53.8
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeee-CCeehHHHHHHHHhcc---CCC-CeEEEEcCCCchHHHHHHHhhc
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPL-LGQPIALYSFYTFSRM---VEV-KEIVVVCDPSYSDIFEETKEKI 133 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l-~GkpLl~~~i~~l~~~---~~i-~~IvVv~~~~~~~~~~~~~~~~ 133 (294)
...++.+|+||||.|||||.+.||.+.+| .|+++++..++++... -++ =.++|-+.....+...+++++|
T Consensus 53 ~~~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky 127 (420)
T PF01704_consen 53 ALGKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY 127 (420)
T ss_dssp HTTCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG
T ss_pred hhCCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh
Confidence 44679999999999999998889999999 6899999988887642 122 2467777776556666777665
No 108
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.00 E-value=0.0026 Score=64.03 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=51.4
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeee---CCeehHHHHHHHHhccC----------CC-CeEEEEcCCCchHHHHHHHh
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPL---LGQPIALYSFYTFSRMV----------EV-KEIVVVCDPSYSDIFEETKE 131 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l---~GkpLl~~~i~~l~~~~----------~i-~~IvVv~~~~~~~~~~~~~~ 131 (294)
.++.+|+||||.|||||.+-||-++++ .|+++++..+++++... ++ =.++|-|.....+...++++
T Consensus 127 ~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~ 206 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE 206 (615)
T ss_pred CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence 578999999999999998889999997 48999999999886530 11 24677777665555566665
Q ss_pred hc
Q 022657 132 KI 133 (294)
Q Consensus 132 ~~ 133 (294)
++
T Consensus 207 ~n 208 (615)
T PLN02830 207 RN 208 (615)
T ss_pred HC
Confidence 43
No 109
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.001 Score=64.17 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=39.5
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHhcc
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLL-GQPIALYSFYTFSRM 108 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~-GkpLl~~~i~~l~~~ 108 (294)
..++++|+||||+|+|||..-||.+.+|. |+++++.++++++..
T Consensus 103 ~~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~l 147 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYL 147 (472)
T ss_pred cCceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHH
Confidence 46789999999999999988899999997 999999999887643
No 110
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.33 E-value=0.44 Score=37.01 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=57.0
Q ss_pred eehHHHHHHHHhccC-CCCeEEEEcCCCchHHHHHHHhhcC---CceEEe--CCCCcHHHHHHHHHHhcccCCCeEEEec
Q 022657 95 QPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKIN---VDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIHD 168 (294)
Q Consensus 95 kpLl~~~i~~l~~~~-~i~~IvVv~~~~~~~~~~~~~~~~~---~~i~~v--~~~~~~~~sv~~al~~~~~~~~~vlv~~ 168 (294)
.+++.++++.+.+.. ...+|+|+.+....+. .+...+.. ..+... ....+...++..+++... .++++++|
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~~~d 85 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGT-LEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR--GEYILFLD 85 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccH-HHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhc--CCEEEEEC
Confidence 689999999998753 2568888887654222 22222221 112222 233455777888888774 68999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 022657 169 SARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 169 ~D~Pli~~~~i~~ll~~~~~ 188 (294)
+|..+ .++.+..++..+..
T Consensus 86 ~D~~~-~~~~~~~~~~~~~~ 104 (156)
T cd00761 86 ADDLL-LPDWLERLVAELLA 104 (156)
T ss_pred CCCcc-CccHHHHHHHHHhc
Confidence 99764 67777777554443
No 111
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.05 E-value=0.31 Score=38.90 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=61.4
Q ss_pred eehHHHHHHHHhcc-CCCCeEEEEcCCCchHHHHHHHhhc---CCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEec
Q 022657 95 QPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHD 168 (294)
Q Consensus 95 kpLl~~~i~~l~~~-~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~ 168 (294)
...|..+++.+.+. ....+|+||-+... +...+.++++ +.++.++. ...+...+...|++.+. .++++++|
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~~ld 86 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGST-DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK--GEYILFLD 86 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-S-SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEEEEE
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccc-cccccccccccccccccccccccccccccccccccccccc--eeEEEEeC
Confidence 35788888877664 24578888776552 2233334333 44666664 23355777888998876 56999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 169 SARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 169 ~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
+|. .+++..+..+++.+.+.+..+
T Consensus 87 ~D~-~~~~~~l~~l~~~~~~~~~~~ 110 (169)
T PF00535_consen 87 DDD-IISPDWLEELVEALEKNPPDV 110 (169)
T ss_dssp TTE-EE-TTHHHHHHHHHHHCTTEE
T ss_pred CCc-eEcHHHHHHHHHHHHhCCCcE
Confidence 985 456779999999998865533
No 112
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.04 E-value=0.52 Score=41.20 Aligned_cols=91 Identities=13% Similarity=-0.027 Sum_probs=62.6
Q ss_pred CCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCC
Q 022657 93 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 172 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~P 172 (294)
++...|..+++.+.. ..++|+||-+... |...+.++.++.++... ...+...+...|+..+. .++++++|+|.
T Consensus 10 Ne~~~l~~~l~sl~~--~~~eiivvD~gSt-D~t~~i~~~~~~~v~~~-~~~g~~~~~n~~~~~a~--~d~vl~lDaD~- 82 (229)
T cd02511 10 NEERNIERCLESVKW--AVDEIIVVDSGST-DRTVEIAKEYGAKVYQR-WWDGFGAQRNFALELAT--NDWVLSLDADE- 82 (229)
T ss_pred CcHHHHHHHHHHHhc--ccCEEEEEeCCCC-ccHHHHHHHcCCEEEEC-CCCChHHHHHHHHHhCC--CCEEEEEeCCc-
Confidence 445678888888864 3488888766543 44555666666544333 33445666677888765 57999999995
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 022657 173 LVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 173 li~~~~i~~ll~~~~~~~ 190 (294)
.++++.+..+.+.+...+
T Consensus 83 ~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 83 RLTPELADEILALLATDD 100 (229)
T ss_pred CcCHHHHHHHHHHHhCCC
Confidence 578999999988876554
No 113
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=94.17 E-value=0.05 Score=52.66 Aligned_cols=44 Identities=32% Similarity=0.571 Sum_probs=37.1
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHhc
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLL---GQPIALYSFYTFSR 107 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~---GkpLl~~~i~~l~~ 107 (294)
...++.++++|||+|||+|.+.||.+.+++ |+.++++..+.+..
T Consensus 94 ~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~ 140 (477)
T KOG2388|consen 94 AEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILK 140 (477)
T ss_pred hcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHH
Confidence 446789999999999999988999999997 56688887776643
No 114
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.13 E-value=1.5 Score=36.70 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=58.1
Q ss_pred hHHHHHHHHhccCC-CCeEEEEcCCCchHHHHHHHhhcC--CceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCC
Q 022657 97 IALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKIN--VDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSAR 171 (294)
Q Consensus 97 Ll~~~i~~l~~~~~-i~~IvVv~~~~~~~~~~~~~~~~~--~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~ 171 (294)
.|..+++.+..-.. -.+|+||-+....+...+.+.++. .++.++. .+.+...+...|+.... .++++++|+|.
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~Dd 91 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDTDD 91 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCCcc
Confidence 78888888865321 256766655432233333333321 1245443 33455777788888765 68999999985
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 022657 172 PLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 172 Pli~~~~i~~ll~~~~~~~ 190 (294)
.+.+..+..+++.+.++.
T Consensus 92 -~~~~~~l~~~~~~~~~~~ 109 (201)
T cd04195 92 -ISLPDRFEKQLDFIEKNP 109 (201)
T ss_pred -ccCcHHHHHHHHHHHhCC
Confidence 578999999999887654
No 115
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=93.71 E-value=2.3 Score=35.38 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=60.4
Q ss_pred CCeehHHHHHHHHhccCC---CCeEEEEcCCCchHHHHHHHhhcCCceEEeC--CCCcHHHHHHHHHHhcc---cCCCeE
Q 022657 93 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD---FNSELV 164 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~---i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~~~~~~sv~~al~~~~---~~~~~v 164 (294)
+....|..+++.+.+... .-+|+||.+... |...+.+..++..+.... ...+...++..|+..+. ...+++
T Consensus 7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~-D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v 85 (183)
T cd06438 7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT-DDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAV 85 (183)
T ss_pred chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC-chHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEE
Confidence 334577778888765321 235777765543 545555555654443322 23345677777877652 347899
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 165 CIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 165 lv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
+++|+|.- +.++.+.++++.+...
T Consensus 86 ~~~DaD~~-~~p~~l~~l~~~~~~~ 109 (183)
T cd06438 86 VVFDADNL-VDPNALEELNARFAAG 109 (183)
T ss_pred EEEcCCCC-CChhHHHHHHHHHhhC
Confidence 99999954 5799999999988653
No 116
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=93.53 E-value=0.64 Score=37.11 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHhccCCCCeEEEEcCC-CchHHHHHHHhhcCCceEEe-CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHH
Q 022657 102 FYTFSRMVEVKEIVVVCDP-SYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDV 179 (294)
Q Consensus 102 i~~l~~~~~i~~IvVv~~~-~~~~~~~~~~~~~~~~i~~v-~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i 179 (294)
++++.+....+ ++|...+ .......... ....+.+. +++.+..+-+.+|++.+....+.|+++.+|.|.++++.+
T Consensus 2 l~~~~~~~~~~-~~l~~~~~~~~~~~~~~~--~~~~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l 78 (122)
T PF09837_consen 2 LAALAQADGAD-VVLAYTPDGDHAAFRQLW--LPSGFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL 78 (122)
T ss_dssp ------TSSSE-EEEEE----TTHHHHHHH--H-TTSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred ccccccCCCcC-EEEEEcCCccHHHHhccc--cCCCCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence 45555554444 5555544 3333332211 12334444 455556777778877774345677778899999999999
Q ss_pred HHHHHHHHhcCcEEEEEEc
Q 022657 180 QKVLMDALRVGAAVLGVPA 198 (294)
Q Consensus 180 ~~ll~~~~~~~~~i~~~~~ 198 (294)
.+..+.+...+. +.-|.
T Consensus 79 ~~A~~~L~~~d~--VlgPa 95 (122)
T PF09837_consen 79 EQAFEALQRHDV--VLGPA 95 (122)
T ss_dssp HHHHHHTTT-SE--EEEEB
T ss_pred HHHHHHhccCCE--EEeec
Confidence 999998876653 33454
No 117
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.33 E-value=1.2 Score=38.91 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCC---CeEEEEcCCCchHHHHHHHhhcCC-ceEEeC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINV-DLKFSL 141 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i---~~IvVv~~~~~~~~~~~~~~~~~~-~i~~v~ 141 (294)
+++++||++-+.. ..|..+++.+.+...- -+|+|+.+... |...+.+.++.. ++.++.
T Consensus 29 ~~isVvip~~n~~-----------------~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~ 90 (251)
T cd06439 29 PTVTIIIPAYNEE-----------------AVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLR 90 (251)
T ss_pred CEEEEEEecCCcH-----------------HHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEE
Confidence 5677777765533 3344555554332111 36777766543 333444444432 244432
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
...+...++..|++.+. .|+++++|+|.-+ +++.+.++++.+...+
T Consensus 91 ~~~~~g~~~a~n~gi~~a~--~d~i~~lD~D~~~-~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 91 FPERRGKAAALNRALALAT--GEIVVFTDANALL-DPDALRLLVRHFADPS 138 (251)
T ss_pred cCCCCChHHHHHHHHHHcC--CCEEEEEccccCc-CHHHHHHHHHHhcCCC
Confidence 33455777888888776 5899999999654 6999999999886433
No 118
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.18 E-value=2.3 Score=36.41 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=57.2
Q ss_pred ehHHHHHHHHhccCCCC---eEEEEcCCCchHHHHHHHhhcCC--ceEEe--CCCCc-HHHHHHHHHHhcccCCCeEEEe
Q 022657 96 PIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV--DLKFS--LPGKE-RQDSVYSGLQEVDFNSELVCIH 167 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~---~IvVv~~~~~~~~~~~~~~~~~~--~i~~v--~~~~~-~~~sv~~al~~~~~~~~~vlv~ 167 (294)
.+|+.+++.+.....-+ +|+||-+... +...+.+..+.. .+.++ ....+ ....+..|++... .++++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a~--~d~i~~l 91 (234)
T cd06421 15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRR-PELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHTT--GDFVAIL 91 (234)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEEEcCCCc-hhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhCC--CCEEEEE
Confidence 36788888887543233 6888766543 444555554432 22222 21222 3455677888764 7899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhc
Q 022657 168 DSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 168 ~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
|+|. .++++.+.++++.+..+
T Consensus 92 D~D~-~~~~~~l~~l~~~~~~~ 112 (234)
T cd06421 92 DADH-VPTPDFLRRTLGYFLDD 112 (234)
T ss_pred cccc-CcCccHHHHHHHHHhcC
Confidence 9985 56899999999988763
No 119
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=93.02 E-value=1.9 Score=37.22 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=63.4
Q ss_pred eeeCC-ee-hHHHHHHHHhccCC-CCeEEEEcCCCchH----HHHHHHhhcCCceEEeCC--CCc-HHHHHHHHHHhccc
Q 022657 90 LPLLG-QP-IALYSFYTFSRMVE-VKEIVVVCDPSYSD----IFEETKEKINVDLKFSLP--GKE-RQDSVYSGLQEVDF 159 (294)
Q Consensus 90 l~l~G-kp-Ll~~~i~~l~~~~~-i~~IvVv~~~~~~~----~~~~~~~~~~~~i~~v~~--~~~-~~~sv~~al~~~~~ 159 (294)
+|.-+ .+ +|..+++.+.+... --+|+||-+....+ .+++.+.+++.++.++.. ..+ ...++..|++.+..
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~ 83 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP 83 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence 44433 33 78888888876421 24777776543211 233444455555655532 123 25667778887654
Q ss_pred CCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 160 NSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 160 ~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
+.|+++++|+|. .++++.+.+++..+...+
T Consensus 84 ~~d~i~~lD~D~-~~~~~~l~~l~~~~~~~~ 113 (236)
T cd06435 84 DAEIIAVIDADY-QVEPDWLKRLVPIFDDPR 113 (236)
T ss_pred CCCEEEEEcCCC-CcCHHHHHHHHHHhcCCC
Confidence 468999999995 689999999999886433
No 120
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=92.74 E-value=1.2 Score=36.62 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=56.8
Q ss_pred ehHHHHHHHHhccC---CCCeEEEEcCCCchHHHHHHHhhcC---CceEEe--CCCCcHHHHHHHHHHhcccCCCeEEEe
Q 022657 96 PIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKIN---VDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIH 167 (294)
Q Consensus 96 pLl~~~i~~l~~~~---~i~~IvVv~~~~~~~~~~~~~~~~~---~~i~~v--~~~~~~~~sv~~al~~~~~~~~~vlv~ 167 (294)
..|..+++.+.+.. ...+|+|+-+... +...+.++.+. ..+.++ ....+...+...|++... .++++++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~l 86 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVTM 86 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc--CCEEEEE
Confidence 35666666666542 2567888765543 22222332221 223333 233344677778888776 5899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 168 DSARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 168 ~~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
|+|.- +.++.+.+++......+..+
T Consensus 87 D~D~~-~~~~~l~~l~~~~~~~~~~~ 111 (185)
T cd04179 87 DADLQ-HPPEDIPKLLEKLLEGGADV 111 (185)
T ss_pred eCCCC-CCHHHHHHHHHHHhccCCcE
Confidence 99964 58999999999855544433
No 121
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=92.65 E-value=3.9 Score=38.09 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=53.7
Q ss_pred hHHHHHHHHhccCCCCeEEEEcCCCc---hHHHHHHHhhcCCceEEe--CCCCcHHHHHHHHHHhcccCCCeEEEecCCC
Q 022657 97 IALYSFYTFSRMVEVKEIVVVCDPSY---SDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIHDSAR 171 (294)
Q Consensus 97 Ll~~~i~~l~~~~~i~~IvVv~~~~~---~~~~~~~~~~~~~~i~~v--~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~ 171 (294)
+++.+.+.+.+...--+|+||-+... .+.+++..++.+.++..+ ..+.+...++..|+.... .|++++.|+|.
T Consensus 24 ~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~--gd~vv~~DaD~ 101 (325)
T PRK10714 24 LIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT--GDLIITLDADL 101 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC--CCEEEEECCCC
Confidence 34444444433322247777655332 122333333334444432 344566788999998875 68999999996
Q ss_pred CCCCHHHHHHHHHHHHh
Q 022657 172 PLVLSKDVQKVLMDALR 188 (294)
Q Consensus 172 Pli~~~~i~~ll~~~~~ 188 (294)
- .+++.+.++++.+.+
T Consensus 102 q-~~p~~i~~l~~~~~~ 117 (325)
T PRK10714 102 Q-NPPEEIPRLVAKADE 117 (325)
T ss_pred C-CCHHHHHHHHHHHHh
Confidence 5 589999999998754
No 122
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.40 E-value=2.3 Score=36.22 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=56.1
Q ss_pred CeehHHHHHHHHhccCC-C--CeEEEEcCCCchHHHHHHHh---hc-CCceEEeCCC----CcHHHHHHHHHHhcccCCC
Q 022657 94 GQPIALYSFYTFSRMVE-V--KEIVVVCDPSYSDIFEETKE---KI-NVDLKFSLPG----KERQDSVYSGLQEVDFNSE 162 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~-i--~~IvVv~~~~~~~~~~~~~~---~~-~~~i~~v~~~----~~~~~sv~~al~~~~~~~~ 162 (294)
....|..+++.+..... - -+|+||-+... +...+.+. .. +..+.++... .+...++..|++... .+
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~--~d 84 (229)
T cd04192 8 EAENLPRLLQSLSALDYPKEKFEVILVDDHST-DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK--GD 84 (229)
T ss_pred cHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC-cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc--CC
Confidence 44568888888754321 1 36776655432 22222221 11 2345544322 233556667777654 68
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 163 LVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 163 ~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
+++++|+|. .+.++.++++++.+...+.
T Consensus 85 ~i~~~D~D~-~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 85 WIVTTDADC-VVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred EEEEECCCc-ccCHHHHHHHHHHhhcCCC
Confidence 999999997 5689999999997765443
No 123
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=5.5 Score=34.07 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=85.9
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcC--CCchH--HHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCD--PSYSD--IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 170 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~--~~~~~--~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D 170 (294)
+-|+++++++..+.+...+.+.-++ +..-+ .++..+ +....+-.+|....+-+.......-+....|++.-.|
T Consensus 37 r~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~L---g~~lvyqpqGdd~gdRlars~~~a~~~~~~VliIg~D 113 (211)
T COG3222 37 RQLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWL---GSFLVYQPQGDDLGDRLARSHVDAFDGSYPVLIIGMD 113 (211)
T ss_pred HHHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHh---hhheeecccCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 5689999999887643444444344 22212 233333 4344555555555555555443322223556666677
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCCceeChHHHHHHHHhhhhCC----c
Q 022657 171 RPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREG----L 246 (294)
Q Consensus 171 ~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP~~f~~~~l~~~~~~~~~~g----~ 246 (294)
.|-++.+.+.....+....+++. -|.. ++|...--+ + .|.. +.++.+ ..| +
T Consensus 114 cP~lt~elLa~a~taL~~~paVL--Gpa~-------dGGy~llgL---------r--r~~p----e~fe~i-pwg~~~v~ 168 (211)
T COG3222 114 CPGLTAELLADAFTALLQIPAVL--GPAF-------DGGYYLLGL---------R--RFAP----ELFEAI-PWGTPDVL 168 (211)
T ss_pred CCccCHHHHHHHHHHHhcCccee--cccc-------cCcEEEEEe---------e--ccCH----HHHhcC-CCCCchHH
Confidence 79999999999988877666432 1221 123211000 0 1221 122211 111 1
Q ss_pred ccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhh
Q 022657 247 EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 247 ~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
+.| ...+..+|..++.++. .-|||-|+|+.........
T Consensus 169 ~lT--l~~lrqng~~~~llp~---L~DvDrpdDLp~l~~~~~~ 206 (211)
T COG3222 169 ELT--LKALRQNGIDVYLLPR---LGDVDRPDDLPLLRDCCAP 206 (211)
T ss_pred HHH--HHHHHHcCCcccccCc---cccCCCcchhHHHHHhccc
Confidence 111 2345566766666543 6799999999998876543
No 124
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=92.21 E-value=1.9 Score=37.11 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=57.4
Q ss_pred ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh-hc-CCceEEe-CCCCcHHHHHHHHHHhcccCCCeEEEecCCCC
Q 022657 96 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI-NVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCIHDSARP 172 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~-~~-~~~i~~v-~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~P 172 (294)
..|..+++.+.+.. -.+|+||.+... +...+.+. .. ...+.+. ....+...++..|++.+. .++++++|+|.
T Consensus 14 ~~l~~~l~sl~~q~-~~eiivvdd~s~-d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~a~--~d~v~~lD~D~- 88 (235)
T cd06434 14 DVFRECLRSILRQK-PLEIIVVTDGDD-EPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRHVT--TDIVVLLDSDT- 88 (235)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEeCCCC-hHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHHhC--CCEEEEECCCc-
Confidence 67888888887642 457877776554 33333321 11 2233333 233445677777888764 78999999995
Q ss_pred CCCHHHHHHHHHHHHh
Q 022657 173 LVLSKDVQKVLMDALR 188 (294)
Q Consensus 173 li~~~~i~~ll~~~~~ 188 (294)
.++++.++++++.+..
T Consensus 89 ~~~~~~l~~l~~~~~~ 104 (235)
T cd06434 89 VWPPNALPEMLKPFED 104 (235)
T ss_pred eeChhHHHHHHHhccC
Confidence 5678899999998863
No 125
>PRK10073 putative glycosyl transferase; Provisional
Probab=92.20 E-value=4.7 Score=37.55 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=58.9
Q ss_pred CeehHHHHHHHHhccCC-CCeEEEEcCCCc---hHHHHHHHhhcCCceEEeC-CCCcHHHHHHHHHHhcccCCCeEEEec
Q 022657 94 GQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCIHD 168 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~-i~~IvVv~~~~~---~~~~~~~~~~~~~~i~~v~-~~~~~~~sv~~al~~~~~~~~~vlv~~ 168 (294)
....|..+++.+..-.. --+|+||-+... .+.+++...+. ..+.++. ...+...+.-.|++.+. .++++++|
T Consensus 17 ~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~-~~i~vi~~~n~G~~~arN~gl~~a~--g~yi~flD 93 (328)
T PRK10073 17 AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY-PHVRLLHQANAGVSVARNTGLAVAT--GKYVAFPD 93 (328)
T ss_pred CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhC-CCEEEEECCCCChHHHHHHHHHhCC--CCEEEEEC
Confidence 34567777777764321 136777654332 12233333222 3455553 33455666777888775 68999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 169 SARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 169 ~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
+|. ++.++.+..+++.+...+..+
T Consensus 94 ~DD-~~~p~~l~~l~~~~~~~~~dv 117 (328)
T PRK10073 94 ADD-VVYPTMYETLMTMALEDDLDV 117 (328)
T ss_pred CCC-ccChhHHHHHHHHHHhCCCCE
Confidence 985 578999999998876554433
No 126
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.88 E-value=3.1 Score=33.20 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=61.7
Q ss_pred CCeehHHHHHHHHhccC-CCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecC
Q 022657 93 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDS 169 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~-~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~ 169 (294)
+....+..+++.+.+.. ...+|+|+-+... +...+.+.+...++.++. ...+...+...|++.+. .++++++|+
T Consensus 7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~-~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D~ 83 (166)
T cd04186 7 NSLEYLKACLDSLLAQTYPDFEVIVVDNAST-DGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLNP 83 (166)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEEECCCC-chHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCC--CCEEEEECC
Confidence 44568888888887642 2357777766543 333344444433455543 23345777788888874 789999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 022657 170 ARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 170 D~Pli~~~~i~~ll~~~~~~~ 190 (294)
|. .++++.+..+++.+....
T Consensus 84 D~-~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 84 DT-VVEPGALLELLDAAEQDP 103 (166)
T ss_pred Cc-EECccHHHHHHHHHHhCC
Confidence 85 467889999998776553
No 127
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=91.74 E-value=2.5 Score=39.11 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhcc---CCCCeEEEEcCCCchHHHHHHHhhcCCceE---
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRM---VEVKEIVVVCDPSYSDIFEETKEKINVDLK--- 138 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~---~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~--- 138 (294)
.+++++||+|=-.. ..|..+++.+.+. ....+|+||-+.. .|...+.+.+++..+.
T Consensus 30 ~~~vSVVIPayNee-----------------~~I~~~l~sl~~~~~~~~~~EIIVVDDgS-tD~T~~ia~~~~~~v~~~~ 91 (306)
T PRK13915 30 GRTVSVVLPALNEE-----------------ETVGKVVDSIRPLLMEPLVDELIVIDSGS-TDATAERAAAAGARVVSRE 91 (306)
T ss_pred CCCEEEEEecCCcH-----------------HHHHHHHHHHHHHhccCCCcEEEEEeCCC-ccHHHHHHHHhcchhhcch
Confidence 35688888875433 2344444444421 2346888765544 3444445555443211
Q ss_pred -Ee---CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 139 -FS---LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 139 -~v---~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
.+ ....+...++..|+.... .++++++|+|.-..+++.+.++++.+...
T Consensus 92 ~~~~~~~~n~Gkg~A~~~g~~~a~--gd~vv~lDaD~~~~~p~~l~~l~~~l~~~ 144 (306)
T PRK13915 92 EILPELPPRPGKGEALWRSLAATT--GDIVVFVDADLINFDPMFVPGLLGPLLTD 144 (306)
T ss_pred hhhhccccCCCHHHHHHHHHHhcC--CCEEEEEeCccccCCHHHHHHHHHHHHhC
Confidence 11 123345677888887754 68999999996446899999999987533
No 128
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.34 E-value=5 Score=36.43 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=59.4
Q ss_pred ehHHHHHHHHhccC--CC-CeEEEEcCCCchHHHHHH----HhhcCCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEE
Q 022657 96 PIALYSFYTFSRMV--EV-KEIVVVCDPSYSDIFEET----KEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI 166 (294)
Q Consensus 96 pLl~~~i~~l~~~~--~i-~~IvVv~~~~~~~~~~~~----~~~~~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv 166 (294)
..|..+++.+.+.. .. .+|+||-+.......... .......++++.. ..+...+.-.|++... .+++++
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd~i~f 89 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--GDVLVF 89 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--CCEEEE
Confidence 57888888876431 12 378887654431111111 1223335666642 3345667777888765 689999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCcE
Q 022657 167 HDSARPLVLSKDVQKVLMDALRVGAA 192 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~~~~~ 192 (294)
+|+|.- +++..+.++++.+...+..
T Consensus 90 LD~D~~-~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 90 LDSHCE-VNVGWLEPLLARIAENRKT 114 (299)
T ss_pred EeCCcc-cCccHHHHHHHHHHhCCCe
Confidence 999965 4899999999988765543
No 129
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.89 E-value=5.2 Score=33.36 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=56.3
Q ss_pred CCe-ehHHHHHHHHhccCC-CCeEEEEcCCCchHHHHHHHhhc---CCceEEeC--CCCcHHHHHHHHHHhcccCCCeEE
Q 022657 93 LGQ-PIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 93 ~Gk-pLl~~~i~~l~~~~~-i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vl 165 (294)
++. ..|..+++.+.+... ..+|+||-+.......+...+.+ ...+.++. ...+...+...|++... .++++
T Consensus 11 n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~ 88 (202)
T cd04184 11 NTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELAT--GEFVA 88 (202)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhc--CCEEE
Confidence 344 667788887765321 23677765443211222222211 22344442 33345677778888765 68999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHh
Q 022657 166 IHDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 166 v~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
++|+|. .++++.+..+++.+..
T Consensus 89 ~ld~D~-~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 89 LLDHDD-ELAPHALYEVVKALNE 110 (202)
T ss_pred EECCCC-cCChHHHHHHHHHHHh
Confidence 999986 5689999999998844
No 130
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.30 E-value=4.3 Score=34.98 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=57.5
Q ss_pred eehHHHHHHHHhccC---CCCeEEEEcCCCchHHHHHHHhhc---CCceEEeC-CCCcHHHHHHHHHHhcccCCCeEEEe
Q 022657 95 QPIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCIH 167 (294)
Q Consensus 95 kpLl~~~i~~l~~~~---~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v~-~~~~~~~sv~~al~~~~~~~~~vlv~ 167 (294)
.+.|..+++.+.+.. .--+|+||-+... +...+.++.+ ...+.++. .+.+...++..|++... .++++++
T Consensus 12 ~~~l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~a~--~d~v~~l 88 (249)
T cd02525 12 EKYIEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSR--GDIIIRV 88 (249)
T ss_pred hhhHHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHHhC--CCEEEEE
Confidence 456777777776432 1236777755443 3223333332 22355553 33334566777888764 6899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 168 DSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 168 ~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
|+|. .+++..+.++++.+...+.
T Consensus 89 D~D~-~~~~~~l~~~~~~~~~~~~ 111 (249)
T cd02525 89 DAHA-VYPKDYILELVEALKRTGA 111 (249)
T ss_pred CCCc-cCCHHHHHHHHHHHhcCCC
Confidence 9986 5789999999987765443
No 131
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=89.91 E-value=9.2 Score=37.11 Aligned_cols=92 Identities=7% Similarity=0.123 Sum_probs=56.6
Q ss_pred eehHHHHHHHHhccCC-CC--eEEEEcCCCchHHHHH----HHhhcC-CceEEeCCCCcHHHHHHHHHHhcccCCCeEEE
Q 022657 95 QPIALYSFYTFSRMVE-VK--EIVVVCDPSYSDIFEE----TKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSELVCI 166 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~-i~--~IvVv~~~~~~~~~~~----~~~~~~-~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv 166 (294)
...|..+++.+.+... -+ +|+||-+.. .|...+ ....++ ..+.......+...++..|++... .+++++
T Consensus 61 ~~~l~~~l~sl~~q~yp~~~~eIiVVDd~S-tD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~--g~~v~~ 137 (439)
T TIGR03111 61 EDTLFNCIESIYNQTYPIELIDIILANNQS-TDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI--GKYIIH 137 (439)
T ss_pred hHHHHHHHHHHHhcCCCCCCeEEEEEECCC-ChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc--CCEEEE
Confidence 4567777777764321 12 466654433 233222 222222 123334444556778888998765 689999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 167 HDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
.|+|.- ++++.++++++.+.+.+
T Consensus 138 ~DaD~~-~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 138 IDSDGK-LHKDAIKNMVTRFENNP 160 (439)
T ss_pred ECCCCC-cChHHHHHHHHHHHhCC
Confidence 999964 58999999999987543
No 132
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=89.69 E-value=7.6 Score=33.85 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=55.6
Q ss_pred ehHHHHHHHHhccC--CC-CeEEEEcCCCchHHHHHHHhhcC----CceEEeCC--CCcHHHHHHHHHHhcccCCCeEEE
Q 022657 96 PIALYSFYTFSRMV--EV-KEIVVVCDPSYSDIFEETKEKIN----VDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI 166 (294)
Q Consensus 96 pLl~~~i~~l~~~~--~i-~~IvVv~~~~~~~~~~~~~~~~~----~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv 166 (294)
-.|..+++.+.+.. .. -+|+||.+... +...+.++++. ..+..... ..+...++..|++... .+++++
T Consensus 14 ~~l~~~l~sl~~~~y~~~~~eiivVdd~s~-d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~i~~ 90 (241)
T cd06427 14 EVLPQLIASLSALDYPRSKLDVKLLLEEDD-EETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEYVVI 90 (241)
T ss_pred HHHHHHHHHHHhCcCCcccEEEEEEECCCC-chHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCEEEE
Confidence 45667777775431 11 25666655442 33334444432 13333332 2345677888998765 689999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhc
Q 022657 167 HDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
+|+|. .+.++.+.++++.+.+.
T Consensus 91 ~DaD~-~~~~~~l~~~~~~~~~~ 112 (241)
T cd06427 91 YDAED-APDPDQLKKAVAAFARL 112 (241)
T ss_pred EcCCC-CCChHHHHHHHHHHHhc
Confidence 99995 47899999999988653
No 133
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.68 E-value=6.4 Score=31.05 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=55.7
Q ss_pred eehHHHHHHHHhccC-CCCeEEEEcCCCchHHHHHHHhhcC----CceEEe--CCCCcHHHHHHHHHHhcccCCCeEEEe
Q 022657 95 QPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKIN----VDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIH 167 (294)
Q Consensus 95 kpLl~~~i~~l~~~~-~i~~IvVv~~~~~~~~~~~~~~~~~----~~i~~v--~~~~~~~~sv~~al~~~~~~~~~vlv~ 167 (294)
...|..+++.+.+.. .-.+|+|+-+... +...+.+..+. ..+.+. ....+...+...|++.+. .++++++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~~~ 85 (180)
T cd06423 9 EAVIERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVVVL 85 (180)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEEEE
Confidence 457788888887632 1346777755443 22222333221 122222 233345677778888774 6899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcC
Q 022657 168 DSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 168 ~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
|+|. .+.+..+.+++..+....
T Consensus 86 D~D~-~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 86 DADT-ILEPDALKRLVVPFFADP 107 (180)
T ss_pred CCCC-CcChHHHHHHHHHhccCC
Confidence 9996 568999999966655443
No 134
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=89.44 E-value=11 Score=33.00 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=48.9
Q ss_pred eEEEEcCCCc---hHHHHHHHhhcC-CceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 113 EIVVVCDPSY---SDIFEETKEKIN-VDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 113 ~IvVv~~~~~---~~~~~~~~~~~~-~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
+|+||-+... .+.+++..+.++ ..+.++. ...+...++..|+.... .++++++|+|.- .+++.+.++++.+
T Consensus 42 eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~--g~~i~~lD~D~~-~~~~~l~~l~~~~ 118 (243)
T PLN02726 42 EIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS--GDFVVIMDADLS-HHPKYLPSFIKKQ 118 (243)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC--CCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 6777654332 123333333333 2344442 33455677888888765 689999999975 5899999999987
Q ss_pred HhcCcEE
Q 022657 187 LRVGAAV 193 (294)
Q Consensus 187 ~~~~~~i 193 (294)
...++.+
T Consensus 119 ~~~~~~~ 125 (243)
T PLN02726 119 RETGADI 125 (243)
T ss_pred HhcCCcE
Confidence 6554433
No 135
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=89.25 E-value=4.1 Score=37.30 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=61.4
Q ss_pred eeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc-CCceEEeCCCCc--HHHHHHHHHHhcccC-CCeE
Q 022657 89 YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGKE--RQDSVYSGLQEVDFN-SELV 164 (294)
Q Consensus 89 Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~-~~~i~~v~~~~~--~~~sv~~al~~~~~~-~~~v 164 (294)
.+..+....+..++..+.+....++.+|+++....+...+.++.. .+++.++..+.+ -+.+.-.|+..+..+ .+++
T Consensus 9 iv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~ 88 (305)
T COG1216 9 IVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYV 88 (305)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEE
Confidence 344566777888888887764444444434432223333344433 346777654333 244444455444322 2378
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 165 CIHDSARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 165 lv~~~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
++++.|. .+++..+.++++.++..+...
T Consensus 89 l~LN~D~-~~~~~~l~~ll~~~~~~~~~~ 116 (305)
T COG1216 89 LLLNPDT-VVEPDLLEELLKAAEEDPAAG 116 (305)
T ss_pred EEEcCCe-eeChhHHHHHHHHHHhCCCCe
Confidence 8888884 578999999999998765433
No 136
>PRK11204 N-glycosyltransferase; Provisional
Probab=89.11 E-value=5.4 Score=38.12 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=65.8
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCC-CCeEEEEcCCCc---hHHHHHHHhhcCCceEEe
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDLKFS 140 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~-i~~IvVv~~~~~---~~~~~~~~~~~~~~i~~v 140 (294)
.+++++||+|-... ..|..+++.+.+... -.+|+||-+... .+.+++...++ .++.++
T Consensus 53 ~p~vsViIp~yne~-----------------~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i 114 (420)
T PRK11204 53 YPGVSILVPCYNEG-----------------ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVI 114 (420)
T ss_pred CCCEEEEEecCCCH-----------------HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEE
Confidence 35677788775422 446677777654321 236777755432 12223333332 245555
Q ss_pred C--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 141 L--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 141 ~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
. ...+...++..|++... .|++++.|+|. .++++.+.++++.+.+.+
T Consensus 115 ~~~~n~Gka~aln~g~~~a~--~d~i~~lDaD~-~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 115 HLAENQGKANALNTGAAAAR--SEYLVCIDGDA-LLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred EcCCCCCHHHHHHHHHHHcC--CCEEEEECCCC-CCChhHHHHHHHHHHhCC
Confidence 3 33455777888888765 78999999996 568999999999886543
No 137
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=89.10 E-value=6.6 Score=33.33 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=56.6
Q ss_pred CeehHHHHHHHHhcc-----CCCCeEEEEcCCCc---hHHHHHHHhhcCCceEEeC--CCCcHHHHHHHHHHhcccCCCe
Q 022657 94 GQPIALYSFYTFSRM-----VEVKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSEL 163 (294)
Q Consensus 94 GkpLl~~~i~~l~~~-----~~i~~IvVv~~~~~---~~~~~~~~~~~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~ 163 (294)
....|..+++.+.+. ....+|+||-+... .+.+++...+++..+.++. ...+...++..|++.+. .++
T Consensus 8 ~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--gd~ 85 (211)
T cd04188 8 EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--GDY 85 (211)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--CCE
Confidence 344555566555432 12347777654432 1223333333333334443 23456778888998876 689
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 164 VCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 164 vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
++++|+|. ..+++.+.++++.+...+.
T Consensus 86 i~~ld~D~-~~~~~~l~~l~~~~~~~~~ 112 (211)
T cd04188 86 ILFADADL-ATPFEELEKLEEALKTSGY 112 (211)
T ss_pred EEEEeCCC-CCCHHHHHHHHHHHhccCC
Confidence 99999985 4689999999998554443
No 138
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.87 E-value=6.5 Score=32.32 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=55.9
Q ss_pred CCeehHHHHHHHHhccCCCC--eEEEEcCCCchHHHHHHHhhcCCc-eEEe-CCCCcHHHHHHHHHHhcccCCCeEEEec
Q 022657 93 LGQPIALYSFYTFSRMVEVK--EIVVVCDPSYSDIFEETKEKINVD-LKFS-LPGKERQDSVYSGLQEVDFNSELVCIHD 168 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~i~--~IvVv~~~~~~~~~~~~~~~~~~~-i~~v-~~~~~~~~sv~~al~~~~~~~~~vlv~~ 168 (294)
++...|+.+++.+.+- ... +|+||=+.. .+...+.++++... +.+. ....+...++..|++.+. .++++++|
T Consensus 8 n~~~~l~~~l~sl~~q-~~~~~evivvDd~s-~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld 83 (202)
T cd06433 8 NQAETLEETIDSVLSQ-TYPNIEYIVIDGGS-TDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALAT--GDIIGFLN 83 (202)
T ss_pred chHHHHHHHHHHHHhC-CCCCceEEEEeCCC-CccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeC
Confidence 4456788888888653 223 576664333 23334444444322 2333 334456777888998876 68999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc
Q 022657 169 SARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 169 ~D~Pli~~~~i~~ll~~~~~~ 189 (294)
+|. .+.++.+..++..+...
T Consensus 84 ~D~-~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 84 SDD-TLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCc-ccCchHHHHHHHHHHhC
Confidence 985 45678888887555443
No 139
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.86 E-value=5.9 Score=37.71 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=68.6
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCC-CeEEEEcCCCchHHH----HHHHhhcCCceEEe
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIF----EETKEKINVDLKFS 140 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i-~~IvVv~~~~~~~~~----~~~~~~~~~~i~~v 140 (294)
.++..+|+|-+.... .++.+++.+.+...- -+|+||.+... |.. ++...+++.++++.
T Consensus 54 p~vsviiP~ynE~~~----------------~~~~~l~s~~~~dyp~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~ 116 (439)
T COG1215 54 PKVSVIIPAYNEEPE----------------VLEETLESLLSQDYPRYEVIVVDDGST-DETYEILEELGAEYGPNFRVI 116 (439)
T ss_pred CceEEEEecCCCchh----------------hHHHHHHHHHhCCCCCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEE
Confidence 556667766553221 889999998765322 27888776442 333 33333332344444
Q ss_pred ---CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 141 ---LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 141 ---~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
....+-..++..|+.... .|+|++.|+|.. ..++.+.+++..+...+.
T Consensus 117 ~~~~~~~gK~~al~~~l~~~~--~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 117 YPEKKNGGKAGALNNGLKRAK--GDVVVILDADTV-PEPDALRELVSPFEDPPV 167 (439)
T ss_pred eccccCccchHHHHHHHhhcC--CCEEEEEcCCCC-CChhHHHHHHhhhcCCCe
Confidence 233334677888888776 789999999964 689999999999876543
No 140
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=88.73 E-value=9.2 Score=31.42 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=46.0
Q ss_pred CeEEEEcCCCch---HHHHHHHhhcCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 112 KEIVVVCDPSYS---DIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 112 ~~IvVv~~~~~~---~~~~~~~~~~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
-+|+||-+.... +.++....+. .++.++. ...+...++..|++.+. .++++++|+|.. +.++.+.++++..
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~-~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i~~~D~D~~-~~~~~l~~l~~~~ 105 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARD-PRVKVIRLSRNFGQQAALLAGLDHAR--GDAVITMDADLQ-DPPELIPEMLAKW 105 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhC-CCEEEEEecCCCCcHHHHHHHHHhcC--CCEEEEEeCCCC-CCHHHHHHHHHHH
Confidence 478777654431 2223332222 2455442 33455777888888776 589999999976 4889999999885
Q ss_pred H
Q 022657 187 L 187 (294)
Q Consensus 187 ~ 187 (294)
.
T Consensus 106 ~ 106 (181)
T cd04187 106 E 106 (181)
T ss_pred h
Confidence 4
No 141
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=88.11 E-value=8.3 Score=32.70 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=56.5
Q ss_pred CCeehHHHHHHHHhccC--CCCeEEEEcCCCch---HHHHHHHhhcCCceEEe--CCCCcHHHHHHHHHHhcccCCCeEE
Q 022657 93 LGQPIALYSFYTFSRMV--EVKEIVVVCDPSYS---DIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~--~i~~IvVv~~~~~~---~~~~~~~~~~~~~i~~v--~~~~~~~~sv~~al~~~~~~~~~vl 165 (294)
++...|..+++.+.+.. .-.+|+||-+.... +..++..++. ..+.++ ....+...++..|++.+. .++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~-~~i~~~~~~~n~G~~~a~n~g~~~a~--gd~i~ 83 (224)
T cd06442 7 NERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY-PRVRLIVRPGKRGLGSAYIEGFKAAR--GDVIV 83 (224)
T ss_pred chhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC-CceEEEecCCCCChHHHHHHHHHHcC--CCEEE
Confidence 33456777877776532 13467777554321 1222232222 233443 233445677888888876 58999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhc
Q 022657 166 IHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 166 v~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
++|+|.- +.++.+..+++.+...
T Consensus 84 ~lD~D~~-~~~~~l~~l~~~~~~~ 106 (224)
T cd06442 84 VMDADLS-HPPEYIPELLEAQLEG 106 (224)
T ss_pred EEECCCC-CCHHHHHHHHHHHhcC
Confidence 9999854 5799999999986443
No 142
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=87.95 E-value=13 Score=31.64 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCeehHHHHHHHHhccCCC--CeEEEEcCCCch---HHHHHHHhhcC-CceEEe--C----CCCcHHHHHHHHHHhcccC
Q 022657 93 LGQPIALYSFYTFSRMVEV--KEIVVVCDPSYS---DIFEETKEKIN-VDLKFS--L----PGKERQDSVYSGLQEVDFN 160 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~i--~~IvVv~~~~~~---~~~~~~~~~~~-~~i~~v--~----~~~~~~~sv~~al~~~~~~ 160 (294)
++...|..+++.+.....- -+|+||-+.... +.+++...++. ..+.++ . .+.+...+.-.|++...
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~-- 84 (219)
T cd06913 7 NGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS-- 84 (219)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcC--
Confidence 4566888888888653211 277777554321 23333333322 133332 1 12344566667777654
Q ss_pred CCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 161 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 161 ~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
.++++++|+|. ++.++.+.+++..+.+....+
T Consensus 85 gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~ 116 (219)
T cd06913 85 GRYLCFLDSDD-VMMPQRIRLQYEAALQHPNSI 116 (219)
T ss_pred CCEEEEECCCc-cCChhHHHHHHHHHHhCCCcE
Confidence 68999999985 467888888888776544333
No 143
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.83 E-value=10 Score=31.72 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCeehHHHHHHHHhccCC-CCeEEEEcCCCchHHHHHHHhhcCC--ceEEeC--CCCcHHHHHHHHHHhc-ccCCCeEEE
Q 022657 93 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINV--DLKFSL--PGKERQDSVYSGLQEV-DFNSELVCI 166 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~-i~~IvVv~~~~~~~~~~~~~~~~~~--~i~~v~--~~~~~~~sv~~al~~~-~~~~~~vlv 166 (294)
++...|..+++.+.+... -.+|+|+-+... +...+.++++.. ++.++. ...+...++..|+..+ ....+++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ 85 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWL 85 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEEE
Confidence 455678888888875421 246777655432 334444444432 234442 2233344555555543 234689999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHh
Q 022657 167 HDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
+|+|. .+.++.++++++.+..
T Consensus 86 ld~D~-~~~~~~l~~l~~~~~~ 106 (202)
T cd04185 86 MDDDA-IPDPDALEKLLAYADK 106 (202)
T ss_pred eCCCC-CcChHHHHHHHHHHhc
Confidence 99985 5688999999998863
No 144
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=87.81 E-value=15 Score=30.79 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=50.9
Q ss_pred ehHHHHHHHHhcc--CCCCeEEEEcCCCch---HHHHHHHhhcC-CceEEeCCC--Cc---HHHHHHHHHHhcccCCCeE
Q 022657 96 PIALYSFYTFSRM--VEVKEIVVVCDPSYS---DIFEETKEKIN-VDLKFSLPG--KE---RQDSVYSGLQEVDFNSELV 164 (294)
Q Consensus 96 pLl~~~i~~l~~~--~~i~~IvVv~~~~~~---~~~~~~~~~~~-~~i~~v~~~--~~---~~~sv~~al~~~~~~~~~v 164 (294)
+-|...++.+.+. +. -+|+||.+.... +.+++....++ .++.++... .+ ...++..|++... .+++
T Consensus 14 ~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~--~d~i 90 (196)
T cd02520 14 PNLYENLESFFQQDYPK-YEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR--YDIL 90 (196)
T ss_pred ccHHHHHHHHHhccCCC-eEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC--CCEE
Confidence 3456666666542 22 477777664431 22333333332 234443211 11 1334556777655 6899
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHh
Q 022657 165 CIHDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 165 lv~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
+++|+|. .+++..+.++++.+..
T Consensus 91 ~~~D~D~-~~~~~~l~~l~~~~~~ 113 (196)
T cd02520 91 VISDSDI-SVPPDYLRRMVAPLMD 113 (196)
T ss_pred EEECCCc-eEChhHHHHHHHHhhC
Confidence 9999996 4689999999988643
No 145
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=87.80 E-value=2.9 Score=31.13 Aligned_cols=78 Identities=21% Similarity=0.116 Sum_probs=44.4
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe---CCCC--cHHHHHHHHHHhcccCCCeEEEecC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS---LPGK--ERQDSVYSGLQEVDFNSELVCIHDS 169 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v---~~~~--~~~~sv~~al~~~~~~~~~vlv~~~ 169 (294)
.++|...+.-.... |+++|+|..+... +...+.+.++.. +.++ .+.. ......+.++..-..+.+|++.+|+
T Consensus 4 ~~~L~~wl~~~~~l-G~d~i~i~d~~s~-D~t~~~l~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~ 80 (97)
T PF13704_consen 4 ADYLPEWLAHHLAL-GVDHIYIYDDGST-DGTREILRALPG-VGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDA 80 (97)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEECCCC-ccHHHHHHhCCC-cEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEee
Confidence 35667777776665 7999999877653 444555655532 3322 1111 1233344444332234689999999
Q ss_pred CCCCCC
Q 022657 170 ARPLVL 175 (294)
Q Consensus 170 D~Pli~ 175 (294)
|.=+..
T Consensus 81 DEfl~~ 86 (97)
T PF13704_consen 81 DEFLVP 86 (97)
T ss_pred eEEEec
Confidence 964443
No 146
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.64 E-value=11 Score=31.91 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=56.2
Q ss_pred eehHHHHHHHHhccC-CCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCCC
Q 022657 95 QPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPL 173 (294)
Q Consensus 95 kpLl~~~i~~l~~~~-~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pl 173 (294)
.+.|...++.+.... ...+|+||-+... +...+.+++ ..+.+.....+...+...|+..+. .++++++|+|. .
T Consensus 11 ~~~l~~~l~sl~~q~~~~~evivvdd~s~-d~~~~~~~~--~~~~~~~~~~g~~~a~n~g~~~a~--~~~i~~~D~D~-~ 84 (221)
T cd02522 11 AENLPRLLASLRRLNPLPLEIIVVDGGST-DGTVAIARS--AGVVVISSPKGRARQMNAGAAAAR--GDWLLFLHADT-R 84 (221)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEeCCCC-ccHHHHHhc--CCeEEEeCCcCHHHHHHHHHHhcc--CCEEEEEcCCC-C
Confidence 346777777776532 2356777654432 333344444 234555444555666677887765 68999999985 5
Q ss_pred CCHHHHHHHHHHHHhcC
Q 022657 174 VLSKDVQKVLMDALRVG 190 (294)
Q Consensus 174 i~~~~i~~ll~~~~~~~ 190 (294)
+++..+++++......+
T Consensus 85 ~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 85 LPPDWDAAIIETLRADG 101 (221)
T ss_pred CChhHHHHHHHHhhcCC
Confidence 58899999876655444
No 147
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=87.20 E-value=6.7 Score=33.91 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=57.6
Q ss_pred CeehHHHHHHHHhccCCCC-eEEEEcCCCc---hHHHHHHHhhcC-CceEEeC--CCCcHHHHHHHHHHhcccCCCeEEE
Q 022657 94 GQPIALYSFYTFSRMVEVK-EIVVVCDPSY---SDIFEETKEKIN-VDLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 166 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~i~-~IvVv~~~~~---~~~~~~~~~~~~-~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv 166 (294)
+-|++.|.+.......+.+ +|+||-+... .+..+...+.++ .++.+.. +..+...+..+|+.++. .+++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~fivi 94 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GDFIVI 94 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CCeEEE
Confidence 4567777776654433454 5666543221 123333323354 3565543 33455788899999886 688888
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 167 HDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
.|+|.- =.|..+.++++..++..
T Consensus 95 MDaDls-HhPk~ipe~i~lq~~~~ 117 (238)
T KOG2978|consen 95 MDADLS-HHPKFIPEFIRLQKEGN 117 (238)
T ss_pred EeCccC-CCchhHHHHHHHhhccC
Confidence 999854 36788999988766543
No 148
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=87.03 E-value=7.7 Score=36.88 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=65.8
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhcc--CCCCeEEEEcCCCch---HHHHHHHhhcC--Cce
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRM--VEVKEIVVVCDPSYS---DIFEETKEKIN--VDL 137 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~--~~i~~IvVv~~~~~~---~~~~~~~~~~~--~~i 137 (294)
.+++++||+|-+. ...|..+++.+.+. +..-+|+||-+.... +.+++...+++ .++
T Consensus 39 ~p~VSVIIpa~Ne-----------------~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i 101 (384)
T TIGR03469 39 WPAVVAVVPARNE-----------------ADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRL 101 (384)
T ss_pred CCCEEEEEecCCc-----------------HhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcE
Confidence 3568888887653 34466666666542 212378777664431 22333333332 145
Q ss_pred EEeCCC------CcHHHHHHHHHHhccc---CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 138 KFSLPG------KERQDSVYSGLQEVDF---NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 138 ~~v~~~------~~~~~sv~~al~~~~~---~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
+++... .+...++..|++...+ +.|+++++|+|.- ++++.+.++++.+.+.+.
T Consensus 102 ~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~~~ 163 (384)
T TIGR03469 102 TVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAEGL 163 (384)
T ss_pred EEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhCCC
Confidence 555421 1335567777776542 2689999999964 689999999998876543
No 149
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=86.47 E-value=14 Score=34.83 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=61.5
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccC-CCCeEEEEcCCCc---hHHHHHHHhhcC-CceEEe
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMV-EVKEIVVVCDPSY---SDIFEETKEKIN-VDLKFS 140 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~-~i~~IvVv~~~~~---~~~~~~~~~~~~-~~i~~v 140 (294)
+.+++||++-+.. +.|...++.+.+.. .--||+|+.+... .+.+++..++++ .++.++
T Consensus 41 p~VSViiP~~nee-----------------~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v 103 (373)
T TIGR03472 41 PPVSVLKPLHGDE-----------------PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLV 103 (373)
T ss_pred CCeEEEEECCCCC-----------------hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEE
Confidence 4577888877643 44556666664321 1257877665432 233444444443 245544
Q ss_pred CCC----Cc-HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 141 LPG----KE-RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 141 ~~~----~~-~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
..+ .. ....+..+++..+ .|++++.|+|. .++++.+++++..+.+.+
T Consensus 104 ~~~~~~G~~~K~~~l~~~~~~a~--ge~i~~~DaD~-~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 104 IDARRHGPNRKVSNLINMLPHAR--HDILVIADSDI-SVGPDYLRQVVAPLADPD 155 (373)
T ss_pred ECCCCCCCChHHHHHHHHHHhcc--CCEEEEECCCC-CcChhHHHHHHHHhcCCC
Confidence 321 11 2344555565544 78999999995 458999999998885433
No 150
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=86.22 E-value=18 Score=32.74 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHH---HHHhcCcEEEEEE
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM---DALRVGAAVLGVP 197 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~---~~~~~~~~i~~~~ 197 (294)
+.+.+.-.|++.+. +++++++|+|. +++++.+.++++ ........+++.|
T Consensus 75 ~~a~arN~g~~~A~--~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p 127 (281)
T PF10111_consen 75 SRAKARNIGAKYAR--GDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP 127 (281)
T ss_pred CHHHHHHHHHHHcC--CCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34555666777665 78999999995 678999999999 4444433344444
No 151
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=86.18 E-value=13 Score=31.12 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=57.3
Q ss_pred CCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh-hc-CCceEEeC-----CCCcHHHHHHHHHHhccc------
Q 022657 93 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI-NVDLKFSL-----PGKERQDSVYSGLQEVDF------ 159 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~-~~-~~~i~~v~-----~~~~~~~sv~~al~~~~~------ 159 (294)
+....|..+++.+.+...-.+|+||-+... |...+.++ .. ...+.++. ...+...++..|++.+..
T Consensus 7 Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g 85 (191)
T cd06436 7 NEEAVIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG 85 (191)
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence 556688888888876422236777665443 33333333 21 23455542 123557778888876531
Q ss_pred ---CCCeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 160 ---NSELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 160 ---~~~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
..++++++|+|.- +++..+..+...+.
T Consensus 86 ~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~ 115 (191)
T cd06436 86 ADPERVIIAVIDADGR-LDPNALEAVAPYFS 115 (191)
T ss_pred cCCCccEEEEECCCCC-cCHhHHHHHHHhhc
Confidence 2368999999964 68899998776654
No 152
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=85.84 E-value=17 Score=38.52 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=56.7
Q ss_pred hHHHHHHHHhccCC-CC--eEEEEcCCCchHHHHHHHhhcCCceEEeC--CCC-cHHHHHHHHHHhcccCCCeEEEecCC
Q 022657 97 IALYSFYTFSRMVE-VK--EIVVVCDPSYSDIFEETKEKINVDLKFSL--PGK-ERQDSVYSGLQEVDFNSELVCIHDSA 170 (294)
Q Consensus 97 Ll~~~i~~l~~~~~-i~--~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~~-~~~~sv~~al~~~~~~~~~vlv~~~D 170 (294)
++..++.++.+... -+ +|+|+-+.. .|..++.+++.+ +.++. ++. .....+..|++..+ .|++++.|+|
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS-~D~t~~la~~~~--v~yI~R~~n~~gKAGnLN~aL~~a~--GEyIavlDAD 349 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGG-REEFRQFAQEVG--VKYIARPTHEHAKAGNINNALKYAK--GEFVAIFDCD 349 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCC-ChHHHHHHHHCC--cEEEEeCCCCcchHHHHHHHHHhCC--CCEEEEECCC
Confidence 56667776654321 12 577664443 466677777665 44442 112 23566788888765 7899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 022657 171 RPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 171 ~Pli~~~~i~~ll~~~~~~~ 190 (294)
.- .+++.+++++..+.+++
T Consensus 350 ~i-p~pdfL~~~V~~f~~dP 368 (852)
T PRK11498 350 HV-PTRSFLQMTMGWFLKDK 368 (852)
T ss_pred CC-CChHHHHHHHHHHHhCC
Confidence 64 68899999988765544
No 153
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=85.77 E-value=13 Score=33.33 Aligned_cols=90 Identities=8% Similarity=-0.048 Sum_probs=58.2
Q ss_pred ehHHHHHHHHhccCCCCeEEEEcCCCc-hHHHHHHHhhcCCceEEeCC--CCcHHHHHHHHHHhcc-cCCCeEEEecCCC
Q 022657 96 PIALYSFYTFSRMVEVKEIVVVCDPSY-SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSELVCIHDSAR 171 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~~IvVv~~~~~-~~~~~~~~~~~~~~i~~v~~--~~~~~~sv~~al~~~~-~~~~~vlv~~~D~ 171 (294)
..|..+++.+.+ ...+|+||=+... .+.+++..... .++.++.. ..+.+.+...|++.+. .+.|+++++|.|.
T Consensus 8 ~~l~~~l~sl~~--q~~~iiVVDN~S~~~~~~~~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~ 84 (281)
T TIGR01556 8 EHLGELITSLPK--QVDRIIAVDNSPHSDQPLKNARLRG-QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDS 84 (281)
T ss_pred HHHHHHHHHHHh--cCCEEEEEECcCCCcHhHHHHhccC-CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 467788888875 4578877755531 12344443332 35666643 3344666777776652 2468999999996
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 022657 172 PLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 172 Pli~~~~i~~ll~~~~~~ 189 (294)
- +.++.+.++++.+...
T Consensus 85 ~-~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 85 R-PGNAFLAAQWKLLSAE 101 (281)
T ss_pred C-CCHHHHHHHHHHHHhc
Confidence 4 5789999999887654
No 154
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.67 E-value=12 Score=31.35 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCeehHHHHHHHHhccC-CCCeEEEEcCCCc---hHHHHHHHhhcCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEE
Q 022657 93 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 166 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~-~i~~IvVv~~~~~---~~~~~~~~~~~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv 166 (294)
+....|..+++.+.+.. .--+|+||-+... .+.+++...+++..+.+.. .+.+...++..|+.... .+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~--g~~v~~ 85 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD--GDYVFF 85 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC--CCEEEE
Confidence 34457788888876532 1236777655332 1233333333332344443 33345666777877654 789999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhc
Q 022657 167 HDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
+|+|. .+.++.+..+++.+...
T Consensus 86 ld~Dd-~~~~~~l~~~~~~~~~~ 107 (214)
T cd04196 86 CDQDD-IWLPDKLERLLKAFLKD 107 (214)
T ss_pred ECCCc-ccChhHHHHHHHHHhcC
Confidence 99984 56799999999985443
No 155
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=85.01 E-value=18 Score=35.02 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=64.5
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccC-CCCeEEEEcCCCch---HHHHHHHhhcCCceEEeC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYS---DIFEETKEKINVDLKFSL 141 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~-~i~~IvVv~~~~~~---~~~~~~~~~~~~~i~~v~ 141 (294)
+.+++||++-... ..+..+++.+.+.. .--+|+||.+.... +.+++...++ .++.++.
T Consensus 75 p~vsViIP~yNE~-----------------~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~ 136 (444)
T PRK14583 75 PLVSILVPCFNEG-----------------LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-PRLRVIH 136 (444)
T ss_pred CcEEEEEEeCCCH-----------------HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEE
Confidence 4577777776533 34566666665431 12478777654321 2233333333 2455443
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
...+...++..|+.... .|++++.|+|. .++++.+.++++.+.+.+
T Consensus 137 ~~~n~Gka~AlN~gl~~a~--~d~iv~lDAD~-~~~~d~L~~lv~~~~~~~ 184 (444)
T PRK14583 137 LAHNQGKAIALRMGAAAAR--SEYLVCIDGDA-LLDKNAVPYLVAPLIANP 184 (444)
T ss_pred eCCCCCHHHHHHHHHHhCC--CCEEEEECCCC-CcCHHHHHHHHHHHHhCC
Confidence 44456778888888754 78999999996 468999999998876543
No 156
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=84.49 E-value=10 Score=35.45 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=46.2
Q ss_pred CeEEEEcCCCc---hHHHHHHHhhc---CCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHH
Q 022657 112 KEIVVVCDPSY---SDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL 183 (294)
Q Consensus 112 ~~IvVv~~~~~---~~~~~~~~~~~---~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll 183 (294)
-+|+||-+... .+..++...+. +..+.++. ...+...++..|+.... .++++++|+|.. .+++.+.+++
T Consensus 108 ~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~a~--gd~I~~~DaD~~-~~~~~l~~l~ 184 (333)
T PTZ00260 108 YEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASR--GKYILMVDADGA-TDIDDFDKLE 184 (333)
T ss_pred EEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHHcc--CCEEEEEeCCCC-CCHHHHHHHH
Confidence 47877765332 12223332222 12355553 33456778888998765 689999999964 5788888888
Q ss_pred HHHHh
Q 022657 184 MDALR 188 (294)
Q Consensus 184 ~~~~~ 188 (294)
+.+..
T Consensus 185 ~~l~~ 189 (333)
T PTZ00260 185 DIMLK 189 (333)
T ss_pred HHHHH
Confidence 87753
No 157
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=84.21 E-value=18 Score=30.96 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=55.7
Q ss_pred eeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--CCCcHHHHHHHHHHhccc-CCCeEEE
Q 022657 91 PLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDF-NSELVCI 166 (294)
Q Consensus 91 ~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~~~~~~sv~~al~~~~~-~~~~vlv 166 (294)
..++. ..|..+++.+.+ ...+|+||=+... +......+.....+.++. ...+...+...|++.+.. +.+++++
T Consensus 5 ~yn~~~~~l~~~l~sl~~--q~~~iivvDn~s~-~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 5 TYNPDLSKLKELLAALAE--QVDKVVVVDNSSG-NDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred EecCCHHHHHHHHHHHhc--cCCEEEEEeCCCC-ccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEE
Confidence 34666 789999999876 3567777654432 222222221123444443 334456667778877642 4589999
Q ss_pred ecCCCCCCCHHHHHHHH
Q 022657 167 HDSARPLVLSKDVQKVL 183 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll 183 (294)
+|+|.- ++++.+.+++
T Consensus 82 lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDSV-PPPDMVEKLL 97 (237)
T ss_pred ECCCCC-cCHhHHHHHH
Confidence 999965 5799999996
No 158
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=82.43 E-value=7.5 Score=33.21 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=52.3
Q ss_pred eehHHHHHHHHhccCC-CCeEEEEcCCCc---hHHHHHHHhhcCC-ceEEeCCCC--c---HHHHHHHHHHhcccCCCeE
Q 022657 95 QPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINV-DLKFSLPGK--E---RQDSVYSGLQEVDFNSELV 164 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~-i~~IvVv~~~~~---~~~~~~~~~~~~~-~i~~v~~~~--~---~~~sv~~al~~~~~~~~~v 164 (294)
.+.|..+++.+.+... --+|+|+.+... .+.+++....++. .+.++.... + ...++..|++... .+++
T Consensus 13 ~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~--~d~i 90 (228)
T PF13641_consen 13 DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR--GDYI 90 (228)
T ss_dssp HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-----SEE
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC--CCEE
Confidence 3577888888875321 135666664332 1234444444542 455553322 1 2455677887765 7899
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 165 CIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 165 lv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
+++|+|.- ++++.+.++++.+...+.
T Consensus 91 ~~lD~D~~-~~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 91 LFLDDDTV-LDPDWLERLLAAFADPGV 116 (228)
T ss_dssp EEE-SSEE-E-CHHHHHHHHHHHBSS-
T ss_pred EEECCCcE-ECHHHHHHHHHHHHhCCC
Confidence 99999954 599999999999843333
No 159
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=81.28 E-value=28 Score=36.14 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=55.0
Q ss_pred hHHHHHHHHhccCCC---CeEEEEcCCC-----------------chHHHHHHHhhcCCceEEeC--CCC-cHHHHHHHH
Q 022657 97 IALYSFYTFSRMVEV---KEIVVVCDPS-----------------YSDIFEETKEKINVDLKFSL--PGK-ERQDSVYSG 153 (294)
Q Consensus 97 Ll~~~i~~l~~~~~i---~~IvVv~~~~-----------------~~~~~~~~~~~~~~~i~~v~--~~~-~~~~sv~~a 153 (294)
+++.+++.+.+...- -+|+|+-+.. ..+.+++..++++ +.++. .+. .....+..|
T Consensus 146 iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~--v~yi~r~~n~~~KAgnLN~a 223 (713)
T TIGR03030 146 IVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLG--VNYITRPRNVHAKAGNINNA 223 (713)
T ss_pred HHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcC--cEEEECCCCCCCChHHHHHH
Confidence 566677776543221 2677665431 1123444445554 44442 111 225668888
Q ss_pred HHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 154 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 154 l~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
++..+ .|++++.|+|.- .+++.+++++..+.+.+.
T Consensus 224 l~~a~--gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 224 LKHTD--GELILIFDADHV-PTRDFLQRTVGWFVEDPK 258 (713)
T ss_pred HHhcC--CCEEEEECCCCC-cChhHHHHHHHHHHhCCC
Confidence 88765 689999999964 579999999998865443
No 160
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=80.08 E-value=30 Score=28.05 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=53.1
Q ss_pred CeehHHHHHHHHhccC-CCCeEEEEcCCCchHHHHHHHhhc----CCceEEe-CCCC--cHHHHHHHHHHhcccCCCeEE
Q 022657 94 GQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKI----NVDLKFS-LPGK--ERQDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~-~i~~IvVv~~~~~~~~~~~~~~~~----~~~i~~v-~~~~--~~~~sv~~al~~~~~~~~~vl 165 (294)
....+..+++.+.+.. .-.+|+|+-+... +...+.++.+ +.++..+ .... +...+...|++... .++++
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--g~~i~ 84 (182)
T cd06420 8 RPEALELVLKSVLNQSILPFEVIIADDGST-EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--GDYLI 84 (182)
T ss_pred ChHHHHHHHHHHHhccCCCCEEEEEeCCCc-hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc--CCEEE
Confidence 3446788888886532 2347777655443 3333333332 2223222 2222 23455666777655 68999
Q ss_pred EecCCCCCCCHHHHHHHHHHH
Q 022657 166 IHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 166 v~~~D~Pli~~~~i~~ll~~~ 186 (294)
++|+|. .+++..+.++++.+
T Consensus 85 ~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 85 FIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EEcCCc-ccCHHHHHHHHHHh
Confidence 999986 55888999998876
No 161
>PRK10018 putative glycosyl transferase; Provisional
Probab=79.33 E-value=41 Score=30.58 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=57.0
Q ss_pred CCeehHHHHHHHHhccCC-CCeEEEEcCCCc-hHHHHHHHhhc-CCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEEe
Q 022657 93 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY-SDIFEETKEKI-NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIH 167 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~-i~~IvVv~~~~~-~~~~~~~~~~~-~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~ 167 (294)
+....|..+++.+..-.. --+|+||-+... .+.+++....+ ...+.++.. ..+...+.-.|+..+. .++++++
T Consensus 15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~--g~~I~~l 92 (279)
T PRK10018 15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQ--GEYITGI 92 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEEEE
Confidence 344456777777654211 136777654332 23445554443 345666543 3344566677888765 7899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHh
Q 022657 168 DSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 168 ~~D~Pli~~~~i~~ll~~~~~ 188 (294)
|+|. ...++.+..+++.+..
T Consensus 93 DaDD-~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 93 DDDD-EWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCCC-CCCccHHHHHHHHHHh
Confidence 9985 4568889988887755
No 162
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=78.77 E-value=28 Score=29.88 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=52.1
Q ss_pred CeehHHHHHHHHhccCCC---CeEEEEcCCCc--hHHHHHHHhhc---CCceEEeCCC--Cc-HHHHHHHHHHhcccCCC
Q 022657 94 GQPIALYSFYTFSRMVEV---KEIVVVCDPSY--SDIFEETKEKI---NVDLKFSLPG--KE-RQDSVYSGLQEVDFNSE 162 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~i---~~IvVv~~~~~--~~~~~~~~~~~---~~~i~~v~~~--~~-~~~sv~~al~~~~~~~~ 162 (294)
....|..+|+.+.+...- -+|+|+-+... .+.+++....+ +.++..+... .+ ...++..|++... .+
T Consensus 12 e~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~--~~ 89 (232)
T cd06437 12 EKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAK--GE 89 (232)
T ss_pred cHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCC--CC
Confidence 345677888887653211 25655544221 12233333222 3345544221 22 3556777888765 78
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 163 LVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 163 ~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
+++++|+|. .+.++.+.++...+.
T Consensus 90 ~i~~~DaD~-~~~~~~l~~~~~~~~ 113 (232)
T cd06437 90 YVAIFDADF-VPPPDFLQKTPPYFA 113 (232)
T ss_pred EEEEEcCCC-CCChHHHHHhhhhhc
Confidence 999999996 458999999766553
No 163
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=73.82 E-value=76 Score=32.98 Aligned_cols=101 Identities=8% Similarity=0.102 Sum_probs=58.6
Q ss_pred eeeeCCeeh------HHHHHHHHhccCCCC--eEEEEcCCCchHH-------HHHHHhhcC--CceEEeC--CCCcH-HH
Q 022657 89 YLPLLGQPI------ALYSFYTFSRMVEVK--EIVVVCDPSYSDI-------FEETKEKIN--VDLKFSL--PGKER-QD 148 (294)
Q Consensus 89 Ll~l~GkpL------l~~~i~~l~~~~~i~--~IvVv~~~~~~~~-------~~~~~~~~~--~~i~~v~--~~~~~-~~ 148 (294)
++|+.|+.. |+-+++.+.....-+ +|+|+.+....+. +++..++++ .++.+.. .+.+. ..
T Consensus 129 liP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaG 208 (691)
T PRK05454 129 LMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAG 208 (691)
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHH
Confidence 455556553 555555554332222 5777766543221 223344443 2455542 12222 44
Q ss_pred HHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 149 SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 149 sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
.+..+++....+.|++++.|+|. .++++.+.+++..+..+.
T Consensus 209 Nl~~~~~~~~~~~eyivvLDADs-~m~~d~L~~lv~~m~~dP 249 (691)
T PRK05454 209 NIADFCRRWGGAYDYMVVLDADS-LMSGDTLVRLVRLMEANP 249 (691)
T ss_pred HHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHHHHHHHHhhCc
Confidence 56666766554579999999995 578999999999886543
No 164
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=72.00 E-value=20 Score=34.73 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=48.3
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeee-CCeehHHHHHHHHhcc---CCCC-eEEEEcCCCchHHHHHHHhhcC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPL-LGQPIALYSFYTFSRM---VEVK-EIVVVCDPSYSDIFEETKEKIN 134 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l-~GkpLl~~~i~~l~~~---~~i~-~IvVv~~~~~~~~~~~~~~~~~ 134 (294)
.+...+=|-||.|+-||..-||.+.++ +|.+.++-++++.... -.++ ..++-......+..++.+++|.
T Consensus 102 ~KLavlKLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred hheEEEEecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 356778899999999998789999999 6899888777766432 1344 3444444443345566777663
No 165
>PRK10063 putative glycosyl transferase; Provisional
Probab=71.40 E-value=73 Score=28.18 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCeehHHHHHHHHhcc---CCC-CeEEEEcCCCchHHHHHHHhhcC--CceEEeC-CCCcHHHHHHHHHHhcccCCCeEE
Q 022657 93 LGQPIALYSFYTFSRM---VEV-KEIVVVCDPSYSDIFEETKEKIN--VDLKFSL-PGKERQDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~---~~i-~~IvVv~~~~~~~~~~~~~~~~~--~~i~~v~-~~~~~~~sv~~al~~~~~~~~~vl 165 (294)
+....|..+++.+.+. ... -+|+||=+.. .|...+.++++. .++.++. ...+...++..|++.+. .++++
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~~~~~i~~i~~~~~G~~~A~N~Gi~~a~--g~~v~ 87 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQ--GRFAL 87 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhcccCCEEEEECCCCCHHHHHHHHHHHcC--CCEEE
Confidence 3444567777766421 112 2566654333 243444555543 1355553 33455777888888775 68999
Q ss_pred EecCCCCCCCHHHHH
Q 022657 166 IHDSARPLVLSKDVQ 180 (294)
Q Consensus 166 v~~~D~Pli~~~~i~ 180 (294)
++|+|.-+ .++.++
T Consensus 88 ~ld~DD~~-~~~~~~ 101 (248)
T PRK10063 88 FLNSGDIF-HQDAAN 101 (248)
T ss_pred EEeCCccc-CcCHHH
Confidence 99986433 444433
No 166
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=67.68 E-value=92 Score=27.84 Aligned_cols=101 Identities=8% Similarity=0.128 Sum_probs=55.9
Q ss_pred eeeeCCee--hHHHHHHHHhc----cC--CCCeEEEEcCCCchHH-H------HHHHhhc--CCceEEeC--CCCcH-HH
Q 022657 89 YLPLLGQP--IALYSFYTFSR----MV--EVKEIVVVCDPSYSDI-F------EETKEKI--NVDLKFSL--PGKER-QD 148 (294)
Q Consensus 89 Ll~l~Gkp--Ll~~~i~~l~~----~~--~i~~IvVv~~~~~~~~-~------~~~~~~~--~~~i~~v~--~~~~~-~~ 148 (294)
|+|+.|.+ ++.-.+.++.+ .. .--+|+|+=+....+. . .+....+ +.++.+.. .+.+. ..
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag 83 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAG 83 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHH
Confidence 56777766 35555555432 10 1246755544332111 1 1122223 23455553 22333 45
Q ss_pred HHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 149 SVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 149 sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
.+..++.......+++++.|+|. .+.++.+.+++..+...+
T Consensus 84 ~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~ 124 (254)
T cd04191 84 NIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANP 124 (254)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCC
Confidence 56666665433468999999995 578999999999886543
No 167
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=61.21 E-value=12 Score=33.56 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=56.5
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHH-HHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCCC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFE-ETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPL 173 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pl 173 (294)
...|...+..+.+++.+.+|+||=+... ..-. ......+++++++.........-......++ ++.|+.+|-|. .
T Consensus 12 ~~~L~~~l~~l~~~~~l~~IvVvWn~~~-~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i~--T~AVl~~DDDv-~ 87 (247)
T PF09258_consen 12 SDLLKRLLRHLASSPSLRKIVVVWNNPN-PPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEIE--TDAVLSLDDDV-M 87 (247)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEEE-TS---THHHHHT---S-EEEEEESSHHGGGGGS--TT----SSEEEEEETTE-E
T ss_pred hHHHHHHHHHHHcCCCCCeEEEEeCCCC-CCCcccccCCCCceEEEEecCCccHHhcCcCccccC--cceEEEecCCc-c
Confidence 3578888999998899999999987642 2111 1112234567766433322222223334444 68899999985 5
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEEE
Q 022657 174 VLSKDVQKVLMDALRVGAAVLGVP 197 (294)
Q Consensus 174 i~~~~i~~ll~~~~~~~~~i~~~~ 197 (294)
++.+.++...+..++..--+++++
T Consensus 88 ~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 88 LSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp E-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCHHHHHHHHHHHHhChhheeCCc
Confidence 789999988888776544444443
No 168
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=50.89 E-value=1.4e+02 Score=25.94 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCCCHHHHHHHHHHHHhcC
Q 022657 160 NSELVCIHDSARPLVLSKDVQKVLMDALRVG 190 (294)
Q Consensus 160 ~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~ 190 (294)
..++++++|+|.- ++++.+.++++.+...+
T Consensus 73 ~~e~i~~~DaD~~-~~~~~l~~l~~~~~~~p 102 (244)
T cd04190 73 DPEFILLVDADTK-FDPDSIVQLYKAMDKDP 102 (244)
T ss_pred CCCEEEEECCCCc-CCHhHHHHHHHHHHhCC
Confidence 3789999999964 58999999999886543
No 169
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=49.10 E-value=99 Score=22.31 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=32.9
Q ss_pred EEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecC
Q 022657 115 VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 169 (294)
Q Consensus 115 vVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~ 169 (294)
+++..+.+-+.+...++.++....--....+...+++..++.+++...+.+..|+
T Consensus 14 ~lvS~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDG 68 (74)
T PF04028_consen 14 ALVSRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKEGYSIAITPDG 68 (74)
T ss_pred EEEccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 3444444456777788887754322233445577888888888754445444444
No 170
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=45.15 E-value=2e+02 Score=28.72 Aligned_cols=92 Identities=8% Similarity=0.006 Sum_probs=50.6
Q ss_pred CCeehHHHHHHHH-hccCC-CCeEEEEcCCCch---HHHHHHHhhcCCceEE--eC--CCCcHHHHHHHHHHhcc-----
Q 022657 93 LGQPIALYSFYTF-SRMVE-VKEIVVVCDPSYS---DIFEETKEKINVDLKF--SL--PGKERQDSVYSGLQEVD----- 158 (294)
Q Consensus 93 ~GkpLl~~~i~~l-~~~~~-i~~IvVv~~~~~~---~~~~~~~~~~~~~i~~--v~--~~~~~~~sv~~al~~~~----- 158 (294)
++...|..+++.+ .+... --+|+|++..... +.+++...+++ +++. .. ++.+-..++-.|++.+.
T Consensus 76 NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p-~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~ 154 (504)
T PRK14716 76 READVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYP-RVHLVIVPHDGPTSKADCLNWIYQAIFAFERE 154 (504)
T ss_pred CchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCC-CeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 4455778888764 33211 1268777644321 23444444443 2332 22 22234666766776541
Q ss_pred --cCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 159 --FNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 159 --~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
...|+++++|+|. .++++.++.+...+
T Consensus 155 ~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 155 RGIRFAIIVLHDAED-VIHPLELRLYNYLL 183 (504)
T ss_pred cCCCcCEEEEEcCCC-CcCccHHHHHHhhc
Confidence 1248999999984 57888888764433
No 171
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.39 E-value=2.9e+02 Score=25.46 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=54.5
Q ss_pred eeEEEEeCCCCCCC-CCCCCceeeeeC-Cee-hHHHHHHHHhccCCC---CeEEEEcCCCchHHHHHHHhhcCCceEEeC
Q 022657 68 VSVILLAGGRGKRM-GANMPKQYLPLL-GQP-IALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINVDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRm-g~~~pK~Ll~l~-Gkp-Ll~~~i~~l~~~~~i---~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~ 141 (294)
-.+||||+|.-||. +-+-|+.+.-+. +.| ++++=-+.|....+. ....|.++-...+ +.+.+...|
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~d-w~~~L~~~G------- 165 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDD-WPQALAAAG------- 165 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccc-hHHHHHhcC-------
Confidence 56899999999997 222234233221 344 666665666543211 2233333322111 111111111
Q ss_pred CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 142 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
.+.+...++++.+-.++++++.+++++.....+
T Consensus 166 ---------------~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~ 198 (297)
T COG3315 166 ---------------FDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAAL 198 (297)
T ss_pred ---------------CCcCCCeEEEeccccccCCHHHHHHHHHHHHHh
Confidence 112345677788888999999999999987653
No 172
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.58 E-value=3.6e+02 Score=26.40 Aligned_cols=84 Identities=12% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCceeeeeCCee------hHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCC---ceEEeCCCCcHHHHHHHHHH
Q 022657 85 MPKQYLPLLGQP------IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQ 155 (294)
Q Consensus 85 ~pK~Ll~l~Gkp------Ll~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~---~i~~v~~~~~~~~sv~~al~ 155 (294)
.|-.++.|+|.| ||..+..++.+. + ++.-|++.+...+++--.++++. ++.+. . ++..+.+...++
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~-~--~vLYVsGEES~~QiklRA~RL~~~~~~l~l~-a-Et~~e~I~~~l~ 165 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKR-G--KVLYVSGEESLQQIKLRADRLGLPTNNLYLL-A-ETNLEDIIAELE 165 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhc-C--cEEEEeCCcCHHHHHHHHHHhCCCccceEEe-h-hcCHHHHHHHHH
Confidence 566677777754 777788887754 3 77788888876676655566653 33322 2 345777888887
Q ss_pred hcccCCCeEEEecCCCCCCCH
Q 022657 156 EVDFNSELVCIHDSARPLVLS 176 (294)
Q Consensus 156 ~~~~~~~~vlv~~~D~Pli~~ 176 (294)
..+ .-+++.|+-|-+.++
T Consensus 166 ~~~---p~lvVIDSIQT~~s~ 183 (456)
T COG1066 166 QEK---PDLVVIDSIQTLYSE 183 (456)
T ss_pred hcC---CCEEEEeccceeecc
Confidence 654 335566776555444
No 173
>PRK05967 cystathionine beta-lyase; Provisional
Probab=36.55 E-value=3.8e+02 Score=25.76 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=59.4
Q ss_pred eeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchH---HHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEE
Q 022657 89 YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD---IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 89 Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~---~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vl 165 (294)
++--.|..-+..++..+.+. + |+|++. .+.+.. .+.+.++.+|.++.++... ..+.+..++. +....|+
T Consensus 83 v~~sSG~aAi~~~l~all~~-G-D~Vlv~-~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~--~~e~l~~al~---~~TklV~ 154 (395)
T PRK05967 83 ILVPSGLAAVTVPFLGFLSP-G-DHALIV-DSVYYPTRHFCDTMLKRLGVEVEYYDPE--IGAGIAKLMR---PNTKVVH 154 (395)
T ss_pred EEECcHHHHHHHHHHHhcCC-C-CEEEEc-cCCcHHHHHHHHHHHHhcCeEEEEeCCC--CHHHHHHhcC---cCceEEE
Confidence 33334666677777777653 2 666554 433321 2335566778777777432 1234554443 3456677
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhcCcEE
Q 022657 166 IHDSARPLVLSKDVQKVLMDALRVGAAV 193 (294)
Q Consensus 166 v~~~D~Pli~~~~i~~ll~~~~~~~~~i 193 (294)
+.....|..+...++++.+..++++..+
T Consensus 155 lesPsNP~l~v~dl~~I~~la~~~g~~v 182 (395)
T PRK05967 155 TEAPGSNTFEMQDIPAIAEAAHRHGAIV 182 (395)
T ss_pred EECCCCCCCcHHHHHHHHHHHHHhCCEE
Confidence 7666779999999999999888777543
No 174
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.36 E-value=4.1e+02 Score=25.53 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=49.1
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC---CcHHHHHHHHHHhcccCCCeEEEecCCC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG---KERQDSVYSGLQEVDFNSELVCIHDSAR 171 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~---~~~~~sv~~al~~~~~~~~~vlv~~~D~ 171 (294)
.--++-.+..+.+ + =|+++|+.+-..-+.+.+.++.|+.++..+..+ .-..+.+..+|..-+ +.+.|.++.++.
T Consensus 66 t~amEAav~sl~~-p-gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~-~~~~V~~vH~ET 142 (383)
T COG0075 66 TLAMEAAVASLVE-P-GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDP-DIKAVAVVHNET 142 (383)
T ss_pred HHHHHHHHHhccC-C-CCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC-CccEEEEEeccC
Confidence 3446666666654 2 366666666554466777777777666554321 223566777776322 344555555542
Q ss_pred CCCCHHHHHHHHHHHHhcCc
Q 022657 172 PLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 172 Pli~~~~i~~ll~~~~~~~~ 191 (294)
+==--..++++.+..+++++
T Consensus 143 STGvlnpl~~I~~~~k~~g~ 162 (383)
T COG0075 143 STGVLNPLKEIAKAAKEHGA 162 (383)
T ss_pred cccccCcHHHHHHHHHHcCC
Confidence 21111134444444455554
No 175
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=34.97 E-value=2.2e+02 Score=22.15 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=45.2
Q ss_pred ehHHHHHHHHhccCCCC-eEEEEcCCCchHHHHHHHhhcCCc---eEEe--CCCCcHHHHHHHHHHhcccCCCeEEEecC
Q 022657 96 PIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKINVD---LKFS--LPGKERQDSVYSGLQEVDFNSELVCIHDS 169 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~-~IvVv~~~~~~~~~~~~~~~~~~~---i~~v--~~~~~~~~sv~~al~~~~~~~~~vlv~~~ 169 (294)
..|..+++.+.+....+ +|+||-+.. .|...+.+..+... +... ....+...+...++.... .++++..|+
T Consensus 16 ~~l~~~l~s~~~q~~~~~eiivvddgs-~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~d~ 92 (291)
T COG0463 16 EYLPEALESLLNQTYKDFEIIVVDDGS-TDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEYAR--GDYIVFLDA 92 (291)
T ss_pred hhHHHHHHHHHhhhhcceEEEEEeCCC-CCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHhcc--CCEEEEEcc
Confidence 45666776666532222 655554433 34333344444321 2222 233445666777877766 488888999
Q ss_pred CCCCCCHHHHHHHHHH
Q 022657 170 ARPLVLSKDVQKVLMD 185 (294)
Q Consensus 170 D~Pli~~~~i~~ll~~ 185 (294)
|.- . +..+..+.+.
T Consensus 93 d~~-~-~~~~~~~~~~ 106 (291)
T COG0463 93 DDQ-H-PPELIPLVAA 106 (291)
T ss_pred CCC-C-CHHHHHHHHH
Confidence 865 4 4444444443
No 176
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=32.80 E-value=1.9e+02 Score=24.64 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 111 VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 111 i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
+++|+||=|-.....++.. +..++ +.++|..-......-+..+....+++++.|+|.| .+-|++.+...
T Consensus 2 IkevIVVEGK~D~~~lk~~---~d~~~-I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~---GekIRk~i~~~ 70 (174)
T TIGR00334 2 IKEIIVVEGKDDQARIKQA---FDVDV-IETNGSALKDETINLIKKAQKKQGVIILTDPDFP---GEKIRKKIEQH 70 (174)
T ss_pred CCeEEEEecchHHHHHHHh---cCceE-EEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCc---hHHHHHHHHHH
Confidence 6789888776533333332 22232 2334443222333333333334578888898865 57787777753
No 177
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=32.70 E-value=1.4e+02 Score=24.97 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh
Q 022657 147 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 147 ~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
...+..+++. ....|++++.|+|. .++++.+.+++..+..
T Consensus 19 v~nL~~~~~~-~a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 19 VNNLAQGLEA-GAKYDYLVISDSDI-RVPPDYLRELVAPLAD 58 (175)
T ss_pred HHHHHHHHHh-hCCCCEEEEECCCe-eECHHHHHHHHHHHhC
Confidence 5567777776 23378999999995 6799999999998875
No 178
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=31.59 E-value=33 Score=30.27 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.4
Q ss_pred ceecCCCHHHHHHHHHHHhhhhc
Q 022657 270 TNIKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 270 ~~idVdTpeDL~~ae~~l~~~~~ 292 (294)
.-+|||+|.||-++.++|+-+++
T Consensus 120 LPVDINDPYDlGLLLRhLRHHSN 142 (238)
T PF02084_consen 120 LPVDINDPYDLGLLLRHLRHHSN 142 (238)
T ss_pred cccccCChhhHHHHHHHHHHHHH
Confidence 36899999999999998887654
No 179
>PRK11914 diacylglycerol kinase; Reviewed
Probab=31.49 E-value=4e+02 Score=24.17 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCceeeeeC---C--e--ehHHHHHHHHhccCCCCeEEEEcCCCc-hHHH-HHHHhhcCCceEEeCCCCcH
Q 022657 76 GRGKRMGANMPKQYLPLL---G--Q--PIALYSFYTFSRMVEVKEIVVVCDPSY-SDIF-EETKEKINVDLKFSLPGKER 146 (294)
Q Consensus 76 G~gsRmg~~~pK~Ll~l~---G--k--pLl~~~i~~l~~~~~i~~IvVv~~~~~-~~~~-~~~~~~~~~~i~~v~~~~~~ 146 (294)
|+=+||.. .|-++-++ | + -.++.+++.|.+. +++-.++.+.... ...+ ++.. ..+.++.++.+|.+.
T Consensus 1 ~~~~~~~~--~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~-g~~~~~~~t~~~~~~~~~a~~~~-~~~~d~vvv~GGDGT 76 (306)
T PRK11914 1 GQLRRHEI--GKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVEIVGTDAHDARHLVAAAL-AKGTDALVVVGGDGV 76 (306)
T ss_pred CCcCcCCC--ceEEEEECCCCCCCcHHHHHHHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHHHH-hcCCCEEEEECCchH
Confidence 34456654 25555444 3 2 3566777777664 5653444444332 1122 2222 223456667788877
Q ss_pred HHHHHHHHH
Q 022657 147 QDSVYSGLQ 155 (294)
Q Consensus 147 ~~sv~~al~ 155 (294)
...+..++.
T Consensus 77 i~evv~~l~ 85 (306)
T PRK11914 77 ISNALQVLA 85 (306)
T ss_pred HHHHhHHhc
Confidence 777777774
No 180
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=30.61 E-value=2.3e+02 Score=26.25 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=58.6
Q ss_pred eecccccCCCcccccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhcc----CCC-CeEEEEcCCCchH
Q 022657 50 IRCSAKVDNGSVVVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRM----VEV-KEIVVVCDPSYSD 124 (294)
Q Consensus 50 ~~~~~~~~~~~~m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~----~~i-~~IvVv~~~~~~~ 124 (294)
.+|....++++.| -+++||+|=-+..|++. |++-+++-++.- +.+ .+|+|| ++...|
T Consensus 55 ~~lp~~~d~~~~~----~lsVIVpaynE~~ri~~-------------mldeav~~le~ry~~~~~F~~eiiVv-ddgs~d 116 (323)
T KOG2977|consen 55 RTLPNIRDSPEKM----YLSVIVPAYNEEGRIGA-------------MLDEAVDYLEKRYLSDKSFTYEIIVV-DDGSTD 116 (323)
T ss_pred eeCcccccChhhc----eeEEEEecCCcccchHH-------------HHHHHHHHHHHHhccCCCCceeEEEe-CCCCch
Confidence 4555555655555 57889999888888774 455555554322 223 456665 444344
Q ss_pred HHHHH----HhhcCC-ceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCC
Q 022657 125 IFEET----KEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARP 172 (294)
Q Consensus 125 ~~~~~----~~~~~~-~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~P 172 (294)
...++ ..+++. ++.+.. ...+.+.+++.|+-... .+.+++.|+|-|
T Consensus 117 ~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~r--G~~ilfadAdGa 169 (323)
T KOG2977|consen 117 STVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSR--GQKILFADADGA 169 (323)
T ss_pred hHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhcc--CceEEEEcCCCC
Confidence 33222 235553 444442 22233566777776654 577788888755
No 181
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=30.51 E-value=6.5e+02 Score=26.44 Aligned_cols=90 Identities=9% Similarity=0.060 Sum_probs=51.7
Q ss_pred CCeehHHHHHHHHh---ccCCCCeEEEEcCCCc---hHHHHHHHhhcCCceE--Ee-C-CCCcHHHHHHHHHHhcc----
Q 022657 93 LGQPIALYSFYTFS---RMVEVKEIVVVCDPSY---SDIFEETKEKINVDLK--FS-L-PGKERQDSVYSGLQEVD---- 158 (294)
Q Consensus 93 ~GkpLl~~~i~~l~---~~~~i~~IvVv~~~~~---~~~~~~~~~~~~~~i~--~v-~-~~~~~~~sv~~al~~~~---- 158 (294)
+....+..+++.+. ..|. -+|+|++..+. .+.+++...+++ ++. .. . +..+-..++..++..+.
T Consensus 73 nE~~vi~~~i~~ll~~ldYP~-~eI~vi~~~nD~~T~~~~~~l~~~~p-~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~ 150 (727)
T PRK11234 73 NETGVIGNMAELAATTLDYEN-YHIFVGTYPNDPATQADVDAVCARFP-NVHKVVCARPGPTSKADCLNNVLDAITQFER 150 (727)
T ss_pred cchhhHHHHHHHHHHhCCCCC-eEEEEEecCCChhHHHHHHHHHHHCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 34456777777553 2344 47888764332 234455545554 233 22 2 23345788888887762
Q ss_pred ---cCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 159 ---FNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 159 ---~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
.+.+.++++|+|. .+++..++ ++..+
T Consensus 151 ~~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l 179 (727)
T PRK11234 151 SANFAFAGFILHDAED-VISPMELR-LFNYL 179 (727)
T ss_pred ccCCcccEEEEEcCCC-CCChhHHH-HHHhh
Confidence 1246778899984 67899997 44444
No 182
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.02 E-value=4.6e+02 Score=25.33 Aligned_cols=97 Identities=21% Similarity=0.330 Sum_probs=60.5
Q ss_pred CCeehHHHHHHHHhccCCCCeEEEEcC-CCc-hHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCC
Q 022657 93 LGQPIALYSFYTFSRMVEVKEIVVVCD-PSY-SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 170 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~i~~IvVv~~-~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D 170 (294)
.|..-|.-++-.+.+. | |+|++.-+ +.. ...+...++++++++.++.+.. ...+..++.. +....|++-...
T Consensus 86 SGmaAI~~~~l~ll~~-G-D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~--~~~~~~~~~~--~~tk~v~lEtPs 159 (396)
T COG0626 86 SGMAAISTALLALLKA-G-DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGD--DEALEAAIKE--PNTKLVFLETPS 159 (396)
T ss_pred CcHHHHHHHHHHhcCC-C-CEEEecCCccchHHHHHHHHHHhcCeEEEEECCCC--hHHHHHHhcc--cCceEEEEeCCC
Confidence 4555566666667654 2 77766443 221 2345667778888887775432 2223333321 246777777778
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEEE
Q 022657 171 RPLVLSKDVQKVLMDALRVGAAVLGV 196 (294)
Q Consensus 171 ~Pli~~~~i~~ll~~~~~~~~~i~~~ 196 (294)
.|++.-.+|.++.+..++.+ +++++
T Consensus 160 NP~l~v~DI~~i~~~A~~~g-~~vvV 184 (396)
T COG0626 160 NPLLEVPDIPAIARLAKAYG-ALVVV 184 (396)
T ss_pred CcccccccHHHHHHHHHhcC-CEEEE
Confidence 89999999999999888877 34344
No 183
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.99 E-value=2.1e+02 Score=25.14 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCC-chHHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecC
Q 022657 110 EVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 169 (294)
Q Consensus 110 ~i~~IvVv~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~ 169 (294)
...++++.+.+. +-+++...++++|..+.--....+...+++..+..+.+..++++..|+
T Consensus 66 ~~~~~~amvS~s~DGEliA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itpDg 126 (214)
T COG2121 66 KGKKIYAMVSPSRDGELIARLLEKFGLRVIRGSSNKGGISALRALLKALKQGKSIAITPDG 126 (214)
T ss_pred CCCcEEEEEcCCcCHHHHHHHHHHcCceEEeccCCcchHHHHHHHHHHHhCCCcEEEcCCC
Confidence 345566666543 446677788888853321123445678889999999876677766665
No 184
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=28.48 E-value=4.2e+02 Score=23.44 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEe--CCCC
Q 022657 70 VILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFS--LPGK 144 (294)
Q Consensus 70 aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v--~~~~ 144 (294)
.++||-|.=..+... ++ -+.-..+|...+.++.. + .++.|++...+ +.....++ ++.++.++ .+..
T Consensus 91 illlCTG~F~~l~~~--~~--lleP~ril~~lV~al~~--~-~~vGVivP~~e--Q~~~~~~kW~~l~~~~~~a~asPy~ 161 (221)
T PF07302_consen 91 ILLLCTGEFPGLTAR--NP--LLEPDRILPPLVAALVG--G-HQVGVIVPLPE--QIAQQAEKWQPLGNPVVVAAASPYE 161 (221)
T ss_pred EEEeccCCCCCCCCC--cc--eeehHHhHHHHHHHhcC--C-CeEEEEecCHH--HHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 577888876666652 33 44556899999999864 3 78999888653 33333333 33344443 3343
Q ss_pred cHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHH
Q 022657 145 ERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMD 185 (294)
Q Consensus 145 ~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~ 185 (294)
+..+.+..|-+.+. .+.|+ ++.|| --.+ +..++.++.
T Consensus 162 ~~~~~l~~Aa~~L~~~gadl-IvLDC--mGYt-~~~r~~~~~ 199 (221)
T PF07302_consen 162 GDEEELAAAARELAEQGADL-IVLDC--MGYT-QEMRDIVQR 199 (221)
T ss_pred CCHHHHHHHHHHHHhcCCCE-EEEEC--CCCC-HHHHHHHHH
Confidence 33445555444443 34555 45577 2233 334555554
No 185
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=28.48 E-value=4.2e+02 Score=24.36 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=33.0
Q ss_pred ceeeeeCCee---hHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCC
Q 022657 87 KQYLPLLGQP---IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV 135 (294)
Q Consensus 87 K~Ll~l~Gkp---Ll~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~ 135 (294)
|-+.-++.+| ++..+++++.+.+.++-.+|+||.+. +...+..+.++.
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~~~~~~~~~~~i 52 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-EMLDQVLDLFHL 52 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-HHHHHHHHhcCC
Confidence 3444556566 67888889987667888888898764 455555555654
No 186
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=28.31 E-value=5.1e+02 Score=24.42 Aligned_cols=95 Identities=12% Similarity=0.255 Sum_probs=57.6
Q ss_pred ceeeeeCC-eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCC--cHHHHHHHHHHhcccCCCe
Q 022657 87 KQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK--ERQDSVYSGLQEVDFNSEL 163 (294)
Q Consensus 87 K~Ll~l~G-kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~--~~~~sv~~al~~~~~~~~~ 163 (294)
.+...-+| ..+|+.+++.+.. ++ +.|++ +.+.. ..++...+..|.++..+.-.. -..+++..++.. +.+.
T Consensus 76 ~~V~~gnGsde~i~~l~~~~~~-~g-d~vl~-~~Ptf-~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~---~~~l 148 (356)
T COG0079 76 ENVLVGNGSDELIELLVRAFVE-PG-DTVLI-PEPTF-SMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD---KTKL 148 (356)
T ss_pred ceEEEcCChHHHHHHHHHHhhc-CC-CEEEE-cCCCh-HHHHHHHHhcCCeEEEecccccccCHHHHHHhhhc---CCCE
Confidence 34444444 5588888888875 34 66655 44443 344555555665555443221 224556555543 3678
Q ss_pred EEEecCCCC---CCCHHHHHHHHHHHHh
Q 022657 164 VCIHDSARP---LVLSKDVQKVLMDALR 188 (294)
Q Consensus 164 vlv~~~D~P---li~~~~i~~ll~~~~~ 188 (294)
++++....| +++.+.++++++....
T Consensus 149 v~i~nPNNPTG~~~~~~~l~~l~~~~~~ 176 (356)
T COG0079 149 VFLCNPNNPTGTLLPREELRALLEALPE 176 (356)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 888865544 6889999999987655
No 187
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.99 E-value=5.3e+02 Score=24.62 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=59.4
Q ss_pred CCeehHHHHHHHHhccCCCCeEEEEcCCCch---HHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecC
Q 022657 93 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 169 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~---~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~ 169 (294)
-|..-|..++..+.+. + ++|++ .+.-+. ..+++.+..+++++.++... ..+.+..+++. ...+|++-..
T Consensus 78 SGmaAi~~~l~~ll~~-G-d~iv~-~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~--d~~~l~~~l~~---~t~~v~~Esp 149 (386)
T PF01053_consen 78 SGMAAISAALLALLKP-G-DHIVA-SDDLYGGTYRLLEELLPRFGVEVTFVDPT--DLEALEAALRP---NTKLVFLESP 149 (386)
T ss_dssp SHHHHHHHHHHHHS-T-T-BEEEE-ESSSSHHHHHHHHHCHHHTTSEEEEESTT--SHHHHHHHHCT---TEEEEEEESS
T ss_pred chHHHHHHHHHhhccc-C-CceEe-cCCccCcchhhhhhhhcccCcEEEEeCch--hHHHHHhhccc---cceEEEEEcC
Confidence 4566677777777764 2 66555 454432 33455566778888777542 35667777753 3456766666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEE
Q 022657 170 ARPLVLSKDVQKVLMDALRVGAAVLGVP 197 (294)
Q Consensus 170 D~Pli~~~~i~~ll~~~~~~~~~i~~~~ 197 (294)
..|.++..+|.++.+..++.+.+.+++.
T Consensus 150 sNP~l~v~Dl~~i~~~a~~~g~~~~vVD 177 (386)
T PF01053_consen 150 SNPTLEVPDLEAIAKLAKEHGDILVVVD 177 (386)
T ss_dssp BTTTTB---HHHHHHHHHHTTT-EEEEE
T ss_pred CCcccccccHHHHHHHHHHhCCceEEee
Confidence 7899999999999998888762333443
No 188
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=27.55 E-value=1.6e+02 Score=28.32 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=55.2
Q ss_pred ehHHHHHHHHhccC-CCCeEEEEcCCCc---hHHHHHHHhhcC-CceEEeCCCCcH-----HHHHHHHHHhcccCCCeEE
Q 022657 96 PIALYSFYTFSRMV-EVKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLPGKER-----QDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 96 pLl~~~i~~l~~~~-~i~~IvVv~~~~~---~~~~~~~~~~~~-~~i~~v~~~~~~-----~~sv~~al~~~~~~~~~vl 165 (294)
|-+.+-++.+-... +--|+..++...+ .+.++..+++|+ ++.+++.+|... +.-+.-|.+... .|+|+
T Consensus 98 ~nl~~Nlesffts~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~--ydlvl 175 (431)
T KOG2547|consen 98 PNLYHNLESFFTSQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAK--YDLVL 175 (431)
T ss_pred chhHHhHHHHHhhccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhc--CCEEE
Confidence 34555555554331 2235666665433 345667778884 456655444321 334445555554 67999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhc
Q 022657 166 IHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 166 v~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
++|.+ -++.++++-++...+..+
T Consensus 176 isDsg-I~m~pdtildm~t~M~sh 198 (431)
T KOG2547|consen 176 ISDSG-IFMKPDTILDMATTMMSH 198 (431)
T ss_pred EecCC-eeecCchHHHHHHhhhcc
Confidence 99887 578899999998877643
No 189
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.90 E-value=2.8e+02 Score=23.54 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=48.2
Q ss_pred CCceeeeeCC---eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CCCcHHHHHHHHHHhcccC
Q 022657 85 MPKQYLPLLG---QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFN 160 (294)
Q Consensus 85 ~pK~Ll~l~G---kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~sv~~al~~~~~~ 160 (294)
..-.|+++.+ .|=+...+..++.. ++. ++||.+-.+ ..++...+.++. .++. .......+++.|++...-+
T Consensus 35 lDNTLv~wd~~~~tpe~~~W~~e~k~~-gi~-v~vvSNn~e-~RV~~~~~~l~v--~fi~~A~KP~~~~fr~Al~~m~l~ 109 (175)
T COG2179 35 LDNTLVPWDNPDATPELRAWLAELKEA-GIK-VVVVSNNKE-SRVARAAEKLGV--PFIYRAKKPFGRAFRRALKEMNLP 109 (175)
T ss_pred ccCceecccCCCCCHHHHHHHHHHHhc-CCE-EEEEeCCCH-HHHHhhhhhcCC--ceeecccCccHHHHHHHHHHcCCC
Confidence 3456788753 55555556666664 454 666666443 456656666664 4443 4445577899999887633
Q ss_pred C-CeEEEecCCCC
Q 022657 161 S-ELVCIHDSARP 172 (294)
Q Consensus 161 ~-~~vlv~~~D~P 172 (294)
. +.+|+ +|+-
T Consensus 110 ~~~vvmV--GDqL 120 (175)
T COG2179 110 PEEVVMV--GDQL 120 (175)
T ss_pred hhHEEEE--cchh
Confidence 3 45555 5543
No 190
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=26.78 E-value=4.2e+02 Score=22.95 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=47.4
Q ss_pred CeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeC-------CCCcHHHHHHHHHHhccc---C
Q 022657 94 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL-------PGKERQDSVYSGLQEVDF---N 160 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~-------~~~~~~~sv~~al~~~~~---~ 160 (294)
.-++++.+++.+.. .-..++|-++....+...+.++. ...++.++. ++-+...+.+.+++.+-. +
T Consensus 11 ~~~~~~~l~~~l~~--~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ll~~al~~~~~ 88 (244)
T PF02485_consen 11 DPEQLERLLRLLYH--PDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNLLREALKRDGD 88 (244)
T ss_dssp -HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHHHHHHH-S-
T ss_pred CHHHHHHHHHHhcC--CCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHHHHHHHhcCCC
Confidence 34578888888763 34667787887632322222222 123555543 333445555555544321 3
Q ss_pred CCe-EEEecCCCCCCCHHHHHHHHHHH
Q 022657 161 SEL-VCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 161 ~~~-vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
.++ +++...|.|+.+.+.|.+.++..
T Consensus 89 ~~y~~llSg~D~Pl~s~~~i~~~l~~~ 115 (244)
T PF02485_consen 89 WDYFILLSGQDYPLKSNEEIHEFLESN 115 (244)
T ss_dssp --EEEEEETTEEESS-HHHHHHHHHHT
T ss_pred CcEEEEcccccccccchHHHHHHHHhc
Confidence 554 55566799999999998888765
No 191
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.60 E-value=5.4e+02 Score=24.17 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=51.5
Q ss_pred eeeeCCee-hHHHHHHHHhccC-C--CCeEEEEcCCCchHHHHHHHhhcCCceEEeCC---C-Cc--------HHHHHH-
Q 022657 89 YLPLLGQP-IALYSFYTFSRMV-E--VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---G-KE--------RQDSVY- 151 (294)
Q Consensus 89 Ll~l~Gkp-Ll~~~i~~l~~~~-~--i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~---~-~~--------~~~sv~- 151 (294)
++...++| -+.++++.+.+.. . -.+|+|+.+... +...+.+..++..++++.+ + .. ...++.
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~-~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~ 83 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGY-EEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIAR 83 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCc-hHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHH
Confidence 34456788 6999999998752 2 246777755443 2234445455333433321 0 00 001122
Q ss_pred ---HHHHhcc--cCCCeEEEecCCCCCCCHHHH---HHHHHHHHhcC
Q 022657 152 ---SGLQEVD--FNSELVCIHDSARPLVLSKDV---QKVLMDALRVG 190 (294)
Q Consensus 152 ---~al~~~~--~~~~~vlv~~~D~Pli~~~~i---~~ll~~~~~~~ 190 (294)
.|+..+= ...+.+++++.|. .+.|+.+ .+++..++...
T Consensus 84 hyk~aln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D~ 129 (334)
T cd02514 84 HYKWALTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEEDP 129 (334)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcCC
Confidence 2443331 1257788888774 5678855 44455544433
No 192
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=25.98 E-value=4e+02 Score=25.66 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=49.8
Q ss_pred ceeeeeCCee---hHHHHHHHHhccCCCCeEEEEcCCCch-HHHHHHHhhcCC---ceE--EeCCCCcHHHH---HHHHH
Q 022657 87 KQYLPLLGQP---IALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINV---DLK--FSLPGKERQDS---VYSGL 154 (294)
Q Consensus 87 K~Ll~l~Gkp---Ll~~~i~~l~~~~~i~~IvVv~~~~~~-~~~~~~~~~~~~---~i~--~v~~~~~~~~s---v~~al 154 (294)
|-+.-+|-+| -+.-++.++.+.+.++.++|+||.... +.....++.++. +.. +..++.+..+. +..++
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~ 84 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGL 84 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHH
Confidence 4444455555 345567778776669999999997642 333334443332 222 22234444333 34444
Q ss_pred Hhcc--cCCCeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 155 QEVD--FNSELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 155 ~~~~--~~~~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
..+- ...|.|||+ +|+ ..++...+.++.
T Consensus 85 ~~vl~~~kPD~VlVh-GDT----~t~lA~alaa~~ 114 (383)
T COG0381 85 SKVLEEEKPDLVLVH-GDT----NTTLAGALAAFY 114 (383)
T ss_pred HHHHHhhCCCEEEEe-CCc----chHHHHHHHHHH
Confidence 4331 124677765 764 345554444443
No 193
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.58 E-value=2.7e+02 Score=23.27 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=7.2
Q ss_pred CCCCeEEEEcCCC
Q 022657 109 VEVKEIVVVCDPS 121 (294)
Q Consensus 109 ~~i~~IvVv~~~~ 121 (294)
+.+|.++++++..
T Consensus 104 ~~iD~~vLvSgD~ 116 (160)
T TIGR00288 104 PNIDAVALVTRDA 116 (160)
T ss_pred CCCCEEEEEeccH
Confidence 4456666655554
No 194
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=25.46 E-value=4.9e+02 Score=24.41 Aligned_cols=117 Identities=12% Similarity=0.157 Sum_probs=61.7
Q ss_pred eeEEEEeC--CCCCCCCCC--CC-ceeeeeCCeehHHHHHHHHhcc-CCCCeEEEEcCCCc---h---HHHHHHHhhcCC
Q 022657 68 VSVILLAG--GRGKRMGAN--MP-KQYLPLLGQPIALYSFYTFSRM-VEVKEIVVVCDPSY---S---DIFEETKEKINV 135 (294)
Q Consensus 68 i~aIILAa--G~gsRmg~~--~p-K~Ll~l~GkpLl~~~i~~l~~~-~~i~~IvVv~~~~~---~---~~~~~~~~~~~~ 135 (294)
+-.|..|+ +.|.++-.+ .| .+..-+.+..-++..++.++.. |+++.|.|..++.+ . +.++..+++.|.
T Consensus 110 iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl 189 (322)
T COG2984 110 IPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGL 189 (322)
T ss_pred CCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCC
Confidence 33444444 566666421 12 3555577777788888877655 78999989898775 2 334444445554
Q ss_pred ceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 136 DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 136 ~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
.+.-. .-....-+..+++.+....|.+++ ..| +++ ...+..+++.....
T Consensus 190 ~vve~--~v~~~ndi~~a~~~l~g~~d~i~~-p~d-n~i-~s~~~~l~~~a~~~ 238 (322)
T COG2984 190 EVVEA--AVTSVNDIPRAVQALLGKVDVIYI-PTD-NLI-VSAIESLLQVANKA 238 (322)
T ss_pred EEEEE--ecCcccccHHHHHHhcCCCcEEEE-ecc-hHH-HHHHHHHHHHHHHh
Confidence 33221 111111234444444334566554 344 232 23556666654433
No 195
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=24.69 E-value=4.2e+02 Score=22.20 Aligned_cols=85 Identities=5% Similarity=0.034 Sum_probs=41.8
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCch-HHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhc--------ccCCCeEE
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV--------DFNSELVC 165 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~-~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~--------~~~~~~vl 165 (294)
+++++-+.+..-- ...-+.++|+|+... .-+...++..+.++.+.. ..+...+.+.+.-. -...|+++
T Consensus 7 ~S~~d~i~r~t~~-~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e--~DPi~alqA~~dGf~v~~~~~a~~~adi~v 83 (162)
T PF00670_consen 7 QSLVDGIMRATNL-MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTE--IDPIRALQAAMDGFEVMTLEEALRDADIFV 83 (162)
T ss_dssp HHHHHHHHHHH-S---TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE---SSHHHHHHHHHTT-EEE-HHHHTTT-SEEE
T ss_pred hhHHHHHHhcCce-eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEE--CChHHHHHhhhcCcEecCHHHHHhhCCEEE
Confidence 4555555544322 233567788898754 234556666777666553 23444443332111 12467777
Q ss_pred EecCCCCCCCHHHHHHH
Q 022657 166 IHDSARPLVLSKDVQKV 182 (294)
Q Consensus 166 v~~~D~Pli~~~~i~~l 182 (294)
...+....++.+.++.+
T Consensus 84 taTG~~~vi~~e~~~~m 100 (162)
T PF00670_consen 84 TATGNKDVITGEHFRQM 100 (162)
T ss_dssp E-SSSSSSB-HHHHHHS
T ss_pred ECCCCccccCHHHHHHh
Confidence 66777777888777765
No 196
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.61 E-value=5.2e+02 Score=22.92 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=40.2
Q ss_pred hHHHHHHHHhccCCCCeEEEEcCCCch--HHHHHHHhhcCCceEEeC--CC-------CcHHHHHHHHHHhc-ccCCCeE
Q 022657 97 IALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLKFSL--PG-------KERQDSVYSGLQEV-DFNSELV 164 (294)
Q Consensus 97 Ll~~~i~~l~~~~~i~~IvVv~~~~~~--~~~~~~~~~~~~~i~~v~--~~-------~~~~~sv~~al~~~-~~~~~~v 164 (294)
-..-++++|+.. ++++|.|++.|... +.+.+.+.+.|.++.-.. +- ....+++..++..+ .++.|.+
T Consensus 107 ~~~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 107 PSSAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 466677888876 89999999998741 234455556665543221 10 01244555555443 2345666
Q ss_pred EEe
Q 022657 165 CIH 167 (294)
Q Consensus 165 lv~ 167 (294)
++.
T Consensus 186 fis 188 (239)
T TIGR02990 186 FLS 188 (239)
T ss_pred EEe
Confidence 664
No 197
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=22.59 E-value=5.6e+02 Score=25.02 Aligned_cols=90 Identities=8% Similarity=0.027 Sum_probs=59.0
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc---CCceEEe-------CCCCcHHHHHHHHHHhccc---CC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFS-------LPGKERQDSVYSGLQEVDF---NS 161 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v-------~~~~~~~~sv~~al~~~~~---~~ 161 (294)
--.+++.++++-. | -...+|.++.+..+.++...++. -.+|.+. .+|.++..+.+++++.+-. +.
T Consensus 115 ~~~verll~aiYh-P-qN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~c~~~Ll~~~~~W 192 (439)
T KOG0799|consen 115 YEQVERLLQAIYH-P-QNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLNCLADLLKLSGDW 192 (439)
T ss_pred HHHHHHHHHHHhC-C-cCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHHHHHHHHhcCCCC
Confidence 4477888888864 4 56778888877655555333322 1244432 3566677777888777632 36
Q ss_pred CeEEE-ecCCCCCCCHHHHHHHHHHH
Q 022657 162 ELVCI-HDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 162 ~~vlv-~~~D~Pli~~~~i~~ll~~~ 186 (294)
++++. ...|-|+.+...+.+.++.+
T Consensus 193 ~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 193 DYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred ceeeeccCCCcccCCHHHHHHHHHHc
Confidence 76555 45599999998888888776
No 198
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.34 E-value=65 Score=32.52 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=57.2
Q ss_pred eCCCCCCC----CCCCCc-e----eeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHH-hhcCCceEEeCCC
Q 022657 74 AGGRGKRM----GANMPK-Q----YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK-EKINVDLKFSLPG 143 (294)
Q Consensus 74 AaG~gsRm----g~~~pK-~----Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~-~~~~~~i~~v~~~ 143 (294)
|||.|+-| |+++|. + |+-..-..++.-.+++|...|...+|+||-+... +-..+.. ...|+.+.++.-.
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk-~P~ddl~WPdigvPv~viR~~ 709 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPK-DPPDDLTWPDIGVPVEVIRVA 709 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCC-CChhcccCcCCCCceEEEEcc
Confidence 56666665 555663 2 3334556688889999998889999999988653 2112211 2345556555322
Q ss_pred CcHHHHHHH-HHHhcccCCCeEEEecCCCCCCCHHHH
Q 022657 144 KERQDSVYS-GLQEVDFNSELVCIHDSARPLVLSKDV 179 (294)
Q Consensus 144 ~~~~~sv~~-al~~~~~~~~~vlv~~~D~Pli~~~~i 179 (294)
++ ++-. -+.+-.-+.+.|+-+|.|.-+...+++
T Consensus 710 ~N---sLNNRFlPwd~IETEAvLS~DDDahLrhdEI~ 743 (907)
T KOG2264|consen 710 EN---SLNNRFLPWDRIETEAVLSLDDDAHLRHDEII 743 (907)
T ss_pred cc---cccccccCchhhhheeeeecccchhhhhhhee
Confidence 11 1111 111111136788888887666554443
No 199
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=22.11 E-value=3.7e+02 Score=23.41 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=39.8
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCCceEEeCCC-Cc--HHHHHHHHHHhcccC---CCeEEEe
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INVDLKFSLPG-KE--RQDSVYSGLQEVDFN---SELVCIH 167 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~~i~~v~~~-~~--~~~sv~~al~~~~~~---~~~vlv~ 167 (294)
..||+++++.|+. . -.+.|+++.-+...=++.+.+ .+.++.-+.-| .- ..+-+..|++.+... .|++++-
T Consensus 27 TaLie~~~~~L~~--~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~~~~~Dll~iE 103 (202)
T COG0378 27 TALIEKTLRALKD--E-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLDFPDLDLLFIE 103 (202)
T ss_pred HHHHHHHHHHHHh--h-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhcCCcCCEEEEe
Confidence 3499999999975 3 458888886543222333444 55444433322 11 355567777776532 3555553
No 200
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.04 E-value=3.3e+02 Score=20.11 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=39.6
Q ss_pred EEEEcCC-CchHHHHHHHhhcCCceEEe--CCCCcH-HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 114 IVVVCDP-SYSDIFEETKEKINVDLKFS--LPGKER-QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 114 IvVv~~~-~~~~~~~~~~~~~~~~i~~v--~~~~~~-~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
|.||.|. .....+++.++++|....+. .++... ..-+...+. ..|+|++... +++=.....+-+..++.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~----~aD~VIv~t~---~vsH~~~~~vk~~akk~ 74 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIK----KADLVIVFTD---YVSHNAMWKVKKAAKKY 74 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcC----CCCEEEEEeC---CcChHHHHHHHHHHHHc
Confidence 6677772 33456788888888766655 222211 112333443 3566555322 46667777777776666
Q ss_pred Cc
Q 022657 190 GA 191 (294)
Q Consensus 190 ~~ 191 (294)
+-
T Consensus 75 ~i 76 (97)
T PF10087_consen 75 GI 76 (97)
T ss_pred CC
Confidence 54
No 201
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=21.11 E-value=3.7e+02 Score=20.22 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=29.4
Q ss_pred CceeeeeCCeehHHHHHHHHhcc-CCCCeEEEEcCCCc
Q 022657 86 PKQYLPLLGQPIALYSFYTFSRM-VEVKEIVVVCDPSY 122 (294)
Q Consensus 86 pK~Ll~l~GkpLl~~~i~~l~~~-~~i~~IvVv~~~~~ 122 (294)
+++..-++.||...|++..+.+. .+.+++++-..-..
T Consensus 3 ~envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGra 40 (91)
T COG1581 3 EENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRA 40 (91)
T ss_pred CccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecchh
Confidence 46788899999999999887655 36899998776543
No 202
>PRK06823 ornithine cyclodeaminase; Validated
Probab=20.15 E-value=6.2e+02 Score=23.39 Aligned_cols=83 Identities=10% Similarity=0.132 Sum_probs=49.3
Q ss_pred CceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCch-HHHHHHHhhcCCceEEeCCCCcHHHHHHHHHHhcccCCCeE
Q 022657 86 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 164 (294)
Q Consensus 86 pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~-~~~~~~~~~~~~~i~~v~~~~~~~~sv~~al~~~~~~~~~v 164 (294)
+|.+.-+|--..-.+.++.+.....+++|.|.....+. +.+.+..++.+.++..+. +...+++ +.|+|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~-------~~~~av~----~ADIV 196 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTL-------DAAEVAH----AANLI 196 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEC-------CHHHHhc----CCCEE
Confidence 58888888667777777888777778998886544321 234343333343443331 2444443 35665
Q ss_pred EE-ecCCCCCCCHHHH
Q 022657 165 CI-HDSARPLVLSKDV 179 (294)
Q Consensus 165 lv-~~~D~Pli~~~~i 179 (294)
+. ..+..|++..+.+
T Consensus 197 ~taT~s~~P~~~~~~l 212 (315)
T PRK06823 197 VTTTPSREPLLQAEDI 212 (315)
T ss_pred EEecCCCCceeCHHHc
Confidence 54 4457888876544
Done!