Query 022657
Match_columns 294
No_of_seqs 159 out of 2010
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q80_A 2-C-methyl-D-erythritol 100.0 2.7E-39 9.3E-44 286.1 25.7 219 67-288 7-230 (231)
2 3f1c_A Putative 2-C-methyl-D-e 100.0 1.6E-37 5.4E-42 276.5 22.6 228 66-293 2-238 (246)
3 2yc3_A 2-C-methyl-D-erythritol 100.0 2.8E-35 9.7E-40 257.8 20.9 225 66-290 3-227 (228)
4 1i52_A 4-diphosphocytidyl-2-C- 100.0 5.4E-33 1.8E-37 244.9 22.4 224 66-292 6-232 (236)
5 1vgw_A 4-diphosphocytidyl-2C-m 100.0 1.3E-32 4.3E-37 241.2 23.8 222 62-288 1-229 (231)
6 2xwl_A 2-C-methyl-D-erythritol 100.0 4E-32 1.4E-36 236.6 23.8 222 66-292 1-223 (223)
7 1vpa_A 2-C-methyl-D-erythritol 100.0 1.1E-32 3.9E-37 242.2 20.2 219 66-291 12-231 (234)
8 2vsh_A TARI, 2-C-methyl-D-eryt 100.0 1.7E-31 5.7E-36 234.4 21.3 221 68-289 3-235 (236)
9 2px7_A 2-C-methyl-D-erythritol 100.0 1.6E-30 5.5E-35 229.9 21.7 214 64-291 22-235 (236)
10 1w55_A ISPD/ISPF bifunctional 100.0 1.6E-28 5.5E-33 230.7 13.9 204 66-288 2-205 (371)
11 1h7e_A 3-deoxy-manno-octuloson 100.0 1E-26 3.5E-31 205.5 22.6 219 66-293 1-243 (245)
12 4fce_A Bifunctional protein GL 99.9 3.9E-26 1.3E-30 219.0 23.0 226 62-291 3-246 (459)
13 3k8d_A 3-deoxy-manno-octuloson 99.9 9.8E-26 3.3E-30 202.8 23.1 217 64-288 15-264 (264)
14 3tqd_A 3-deoxy-manno-octuloson 99.9 5.6E-26 1.9E-30 203.6 20.5 218 62-287 4-256 (256)
15 2waw_A MOBA relate protein; un 99.9 4.9E-26 1.7E-30 194.2 19.2 195 62-289 1-197 (199)
16 4fcu_A 3-deoxy-manno-octuloson 99.9 9.8E-26 3.4E-30 201.6 21.4 216 68-291 2-252 (253)
17 1ezi_A CMP-N-acetylneuraminic 99.9 5.7E-27 1.9E-31 205.3 12.8 208 66-289 3-225 (228)
18 3oam_A 3-deoxy-manno-octuloson 99.9 2.1E-25 7.1E-30 199.1 22.2 217 66-290 1-250 (252)
19 2wee_A MOBA-related protein; u 99.9 1.3E-25 4.3E-30 191.6 16.7 191 65-287 3-195 (197)
20 2v0h_A Bifunctional protein GL 99.9 1.5E-24 5.3E-29 207.7 23.0 220 65-290 3-242 (456)
21 2y6p_A 3-deoxy-manno-octuloson 99.9 2.5E-24 8.4E-29 188.7 21.6 211 66-288 1-232 (234)
22 1hm9_A GLMU, UDP-N-acetylgluco 99.9 1.6E-23 5.5E-28 201.6 23.1 219 67-290 11-251 (468)
23 4ecm_A Glucose-1-phosphate thy 99.9 1.8E-23 6.2E-28 187.9 19.9 226 59-292 16-262 (269)
24 1vic_A 3-deoxy-manno-octuloson 99.9 7.2E-23 2.5E-27 183.1 23.6 216 66-290 1-254 (262)
25 3d5n_A Q97W15_sulso; NESG, SSR 99.9 2E-24 6.9E-29 185.6 12.1 187 66-291 1-192 (197)
26 1fxo_A Glucose-1-phosphate thy 99.9 3.1E-23 1.1E-27 189.1 18.9 219 66-289 1-241 (293)
27 1lvw_A Glucose-1-phosphate thy 99.9 9.4E-23 3.2E-27 186.1 21.2 218 68-289 4-242 (295)
28 3juk_A UDP-glucose pyrophospho 99.9 3.5E-23 1.2E-27 186.8 16.4 218 66-290 1-271 (281)
29 3ngw_A Molybdopterin-guanine d 99.9 2.4E-22 8.1E-27 174.6 19.6 183 68-290 1-195 (208)
30 3pnn_A Conserved domain protei 99.9 1.7E-22 5.8E-27 184.9 19.2 219 66-292 4-294 (303)
31 1e5k_A Molybdopterin-guanine d 99.9 8.6E-23 2.9E-27 176.1 16.1 185 65-286 4-193 (201)
32 1qwj_A Cytidine monophospho-N- 99.9 1.3E-22 4.6E-27 178.0 17.0 202 65-293 1-226 (229)
33 3rsb_A Adenosylcobinamide-phos 99.9 4E-24 1.4E-28 182.7 6.3 125 69-199 2-137 (196)
34 2pa4_A UTP-glucose-1-phosphate 99.9 1.1E-21 3.7E-26 181.0 19.5 218 67-288 12-281 (323)
35 3st8_A Bifunctional protein GL 99.9 6.3E-21 2.2E-25 185.7 24.6 228 62-291 7-261 (501)
36 1mc3_A Glucose-1-phosphate thy 99.9 5.3E-22 1.8E-26 181.2 15.6 217 68-289 4-242 (296)
37 2ux8_A Glucose-1-phosphate uri 99.9 1E-21 3.5E-26 178.8 16.6 221 61-288 8-278 (297)
38 1tzf_A Glucose-1-phosphate cyt 99.9 2.3E-20 7.9E-25 165.7 19.0 214 66-290 1-251 (259)
39 2e3d_A UTP--glucose-1-phosphat 99.9 2E-20 7E-25 170.5 19.0 213 67-286 8-278 (302)
40 1jyk_A LICC protein, CTP:phosp 99.9 7.3E-21 2.5E-25 169.7 14.7 211 66-289 24-252 (254)
41 4evw_A Nucleoside-diphosphate- 99.9 1.5E-20 5.1E-25 168.0 16.7 216 70-289 2-247 (255)
42 2e8b_A Probable molybdopterin- 99.8 4.6E-21 1.6E-25 165.1 11.6 106 66-183 13-120 (201)
43 2qh5_A PMI, ALGA, mannose-6-ph 99.8 9.1E-20 3.1E-24 167.0 18.7 219 66-287 3-282 (308)
44 2dpw_A Hypothetical protein TT 99.8 9.8E-21 3.3E-25 166.5 11.1 197 66-281 1-231 (232)
45 2ggo_A 401AA long hypothetical 99.8 2.3E-20 7.8E-25 176.1 14.0 206 69-290 2-225 (401)
46 2xme_A CTP-inositol-1-phosphat 99.8 3.4E-20 1.2E-24 162.5 12.0 203 66-287 17-232 (232)
47 3brk_X Glucose-1-phosphate ade 99.8 1.7E-19 5.9E-24 171.6 17.8 218 67-289 12-285 (420)
48 1yp2_A Glucose-1-phosphate ade 99.8 1.9E-18 6.5E-23 165.7 19.1 220 67-290 20-297 (451)
49 2x65_A Mannose-1-phosphate gua 99.8 6.5E-18 2.2E-22 156.7 17.4 215 68-283 2-270 (336)
50 2cu2_A Putative mannose-1-phos 99.8 3.2E-18 1.1E-22 158.9 12.8 215 66-284 1-266 (337)
51 2i5e_A Hypothetical protein MM 99.2 9E-11 3.1E-15 101.2 13.4 105 68-184 4-111 (211)
52 2i5k_A UTP--glucose-1-phosphat 99.0 3.4E-09 1.1E-13 102.5 12.8 133 64-198 89-263 (488)
53 2icy_A Probable UTP-glucose-1- 98.8 2.6E-08 8.8E-13 95.8 11.7 74 66-140 78-160 (469)
54 1jv1_A Glcnac1P uridyltransfer 98.7 6.3E-08 2.2E-12 94.0 12.1 67 65-132 100-180 (505)
55 3cgx_A Putative nucleotide-dip 98.5 1.8E-06 6E-11 76.1 14.4 98 95-198 37-138 (242)
56 3oc9_A UDP-N-acetylglucosamine 98.4 2.2E-06 7.6E-11 80.6 13.3 69 63-132 31-114 (405)
57 2oeg_A UTP-glucose-1-phosphate 98.4 9.2E-08 3.2E-12 92.6 3.8 64 67-131 75-144 (505)
58 2yqc_A UDP-N-acetylglucosamine 98.3 3.8E-07 1.3E-11 88.2 4.5 68 64-132 100-183 (486)
59 3r3i_A UTP--glucose-1-phosphat 97.6 6.5E-05 2.2E-09 72.6 6.8 69 65-133 125-198 (528)
60 3ogz_A UDP-sugar pyrophosphory 97.5 6.3E-05 2.2E-09 74.0 4.7 69 66-134 113-185 (630)
61 3gue_A UTP-glucose-1-phosphate 97.3 0.00041 1.4E-08 66.5 7.5 67 66-132 75-146 (484)
62 3bcv_A Putative glycosyltransf 95.3 0.36 1.2E-05 40.4 13.1 109 62-191 1-114 (240)
63 3ckj_A Putative uncharacterize 94.1 0.67 2.3E-05 41.5 12.5 106 64-189 46-160 (329)
64 3f1y_A Mannosyl-3-phosphoglyce 93.0 0.71 2.4E-05 42.8 10.9 105 65-189 93-208 (387)
65 1qg8_A Protein (spore coat pol 92.7 0.95 3.2E-05 38.2 10.7 92 94-189 12-116 (255)
66 1xhb_A Polypeptide N-acetylgal 90.1 2.6 8.8E-05 39.5 11.6 107 66-192 29-145 (472)
67 2z86_A Chondroitin synthase; G 87.1 4.3 0.00015 39.4 11.3 92 94-189 386-482 (625)
68 2ffu_A Ppgalnact-2, polypeptid 87.1 2.9 9.8E-05 39.6 9.7 108 65-192 65-177 (501)
69 4fix_A UDP-galactofuranosyl tr 83.9 2.9 9.9E-05 41.5 8.3 96 93-189 190-296 (657)
70 4hg6_A Cellulose synthase subu 83.5 7.9 0.00027 39.1 11.5 91 96-189 154-266 (802)
71 2d7i_A Polypeptide N-acetylgal 83.0 3.7 0.00013 39.7 8.6 93 96-192 126-227 (570)
72 2z86_A Chondroitin synthase; G 78.0 11 0.00037 36.4 10.1 110 62-192 89-205 (625)
73 2bo4_A Mannosylglycerate synth 73.4 24 0.00082 32.6 10.5 44 143-188 73-120 (397)
74 1omz_A Alpha-1,4-N-acetylhexos 61.8 7.1 0.00024 34.7 4.1 99 96-197 41-142 (293)
75 2zu9_A Mannosyl-3-phosphoglyce 55.3 97 0.0033 28.5 10.8 41 145-187 144-185 (394)
76 3l7i_A Teichoic acid biosynthe 37.7 6.9 0.00024 38.9 0.0 72 113-188 33-110 (729)
77 2nxv_A ATP synthase subunits r 36.7 46 0.0016 27.9 5.2 39 147-188 63-101 (249)
78 1fo8_A Alpha-1,3-mannosyl-glyc 33.4 2.4E+02 0.0082 25.2 9.6 96 89-186 7-124 (343)
79 7aat_A Aspartate aminotransfer 20.2 3.5E+02 0.012 23.5 8.2 101 92-194 103-212 (401)
80 1j2j_B ADP-ribosylation factor 20.1 69 0.0024 20.0 2.3 20 272-291 17-36 (45)
No 1
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=100.00 E-value=2.7e-39 Score=286.05 Aligned_cols=219 Identities=29% Similarity=0.370 Sum_probs=192.8
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCcH
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKER 146 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 146 (294)
++.+||||||.|+|||.+.||+|++++|+|||+|+++++.+++.+++|+||++++..+.+++.+.. .+.++.++.++
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---~v~~v~gg~~r 83 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---RAMIVAGGSNR 83 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---GCEEEECCSSH
T ss_pred ceEEEEECCCCCccCCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---CeEEEcCCCch
Confidence 478999999999999988899999999999999999999987679999999998765555555433 45677778889
Q ss_pred HHHHHHHHHhcccC--CCeEEEecCCCCCCCHHHHHHHHHHHHh-cCcEEEEEEcccceEEeCCCCcEEEeccccceeec
Q 022657 147 QDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEM 223 (294)
Q Consensus 147 ~~sv~~al~~~~~~--~~~vlv~~~D~Pli~~~~i~~ll~~~~~-~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~ 223 (294)
.+|+++|+..+.+. .++|+++++|+||+++++|+++++.+.+ .+++++++|+.+++++++++|.+.++++|+.++.+
T Consensus 84 ~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~ 163 (231)
T 3q80_A 84 TDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAV 163 (231)
T ss_dssp HHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEE
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEE
Confidence 99999999998743 5899999999999999999999999887 68889999999999988878999999999999999
Q ss_pred cCCceeChHHHHHHHHhhhh--CCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 224 QTPQVIKPDLLKKGFELVNR--EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 224 ~tP~~f~~~~l~~~~~~~~~--~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
||||+|+.+.+.++++.... .++++||+.++++..|.++..++++..+++|+||+||..||++++
T Consensus 164 qTPq~F~~~~L~~a~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~ 230 (231)
T 3q80_A 164 QTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230 (231)
T ss_dssp CSCEEEEHHHHHHHHHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred cCCcEEEHHHHHHHHHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence 99999999999999886543 358899999999999999999999989999999999999999985
No 2
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=100.00 E-value=1.6e-37 Score=276.54 Aligned_cols=228 Identities=25% Similarity=0.403 Sum_probs=191.9
Q ss_pred CceeEEEEeCCCCCCCCC-CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC--CceEEeCC
Q 022657 66 KSVSVILLAGGRGKRMGA-NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLP 142 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~-~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~--~~i~~v~~ 142 (294)
|++.+||||||.|+||+. ++||+|++++|+|||+|+++++.+++.+++|+||++++..+.+++.+..++ ..+.++.+
T Consensus 2 ~~~~aIIlAaG~g~Rm~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (246)
T 3f1c_A 2 SLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEG 81 (246)
T ss_dssp CCEEEEEECC-----C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEEC
T ss_pred CccEEEEECCccccccCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 468999999999999997 789999999999999999999998756999999999876555566666653 24667777
Q ss_pred CCcHHHHHHHHHHhccc-----CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccc
Q 022657 143 GKERQDSVYSGLQEVDF-----NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDR 217 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~-----~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~ 217 (294)
+.++.+|++.|+..+.+ +.++|+++++|+||+++++++++++.+.+.+++++++++.++++..+++|.+..+.+|
T Consensus 82 ~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~~r 161 (246)
T 3f1c_A 82 GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVR 161 (246)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCCCG
T ss_pred CCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEecCh
Confidence 78899999999998864 3589999999999999999999999998888888999999998887667778888899
Q ss_pred cceeeccCCceeChHHHHHHHHhh-hhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhhcC
Q 022657 218 KTLWEMQTPQVIKPDLLKKGFELV-NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 293 (294)
Q Consensus 218 ~~l~~~~tP~~f~~~~l~~~~~~~-~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~~~ 293 (294)
+.++..++|++|+.+.+.++++.. .+.++++||...+++..|.++..++++..|++||||+||..||++++.+.+.
T Consensus 162 ~~l~~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~~~ 238 (246)
T 3f1c_A 162 DHMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN 238 (246)
T ss_dssp GGEEEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC--
T ss_pred HHhhhhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccccc
Confidence 999999999999999888888765 3334789999999999999999999998999999999999999999987653
No 3
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=100.00 E-value=2.8e-35 Score=257.80 Aligned_cols=225 Identities=81% Similarity=1.216 Sum_probs=176.6
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 145 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 145 (294)
+++.+||||||.|+||+.+.||+|++++|+|||+|+++++.+++++++|+||+++...+..+.....++.++.++.++.+
T Consensus 3 ~~~~aiIlAaG~g~R~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 82 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKE 82 (228)
T ss_dssp TCEEEEEECCCCC-------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECCCSS
T ss_pred cceEEEEECCccccccCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECCCCC
Confidence 46889999999999999767999999999999999999999876799999999987533333232334445666776778
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccC
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQT 225 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~t 225 (294)
+.++++.|+..+..+.+.++++|+|+||++++.++++++.+.+.++++++++..++++.++++|.+.++++++.++..++
T Consensus 83 ~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (228)
T 2yc3_A 83 RQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQT 162 (228)
T ss_dssp HHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBCCCCSCCCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhcCceEEEEeccceEEEEcCCCceEEecCccceEEEeC
Confidence 89999999998865457899999999999999999999988766766667787777665565667777777877888889
Q ss_pred CceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhh
Q 022657 226 PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 226 P~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~ 290 (294)
|+.|+.+.+.+++......++++++...+++..|.++..++++..|+|||||+||+.++++++.+
T Consensus 163 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 227 (228)
T 2yc3_A 163 PQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED 227 (228)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred CcEEEHHHHHHHHHHHHhcCCCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence 99999887777776443445778888788888888888888777899999999999999998764
No 4
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=100.00 E-value=5.4e-33 Score=244.90 Aligned_cols=224 Identities=31% Similarity=0.457 Sum_probs=179.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCC-ceEEeCCCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~-~i~~v~~~~ 144 (294)
|++.+||||||.|+||+.+.||+|++++|+|||+|+++++.+++.+++|+||+++.. +.+.+ +..++. .+.++.++.
T Consensus 6 ~~~~~iIlA~G~g~R~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~v~~~~~~~ 83 (236)
T 1i52_A 6 LDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD-SRFAQ-LPLANHPQITVVDGGD 83 (236)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC-CSGGG-SGGGGCTTEEEEECCS
T ss_pred CceeEEEECCcCccccCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH-HHHHH-HHhcCCCCEEEECCCC
Confidence 578999999999999996679999999999999999999998755899999999764 22333 344432 465666667
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC-cEEEEEEcccceEEeCCC-CcEEEeccccceee
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSE-SFVVRTLDRKTLWE 222 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~-~~i~~~~~~~~~~~~~~~-G~v~~~~~~~~l~~ 222 (294)
++.++++.|+..+. +.+.++++++|+||++++.++++++.+...+ .++++++..++++.++++ |.+.+.+++..++.
T Consensus 84 g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 162 (236)
T 1i52_A 84 ERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWH 162 (236)
T ss_dssp SHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEE
T ss_pred CHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEeccccEEEEcCCCCceeeccChHhhee
Confidence 88999999999884 2578999999999999999999999876554 455567777776555544 57777777888888
Q ss_pred ccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhhc
Q 022657 223 MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 223 ~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~~ 292 (294)
.++|++|+.+.+.+.++...+.|..+++...++...+.++..++.+..|+|||||+||+.++++++.+..
T Consensus 163 ~~~p~~f~~~~l~~~~~~~~~~g~~~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~~~ 232 (236)
T 1i52_A 163 ALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIH 232 (236)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC---
T ss_pred eeCCceecHHHHHHHHHHHHhcCCCcccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHhhh
Confidence 8899999988777777765556666888878888888888888877789999999999999999987654
No 5
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=100.00 E-value=1.3e-32 Score=241.21 Aligned_cols=222 Identities=27% Similarity=0.421 Sum_probs=165.9
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC-CceEEe
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFS 140 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~-~~i~~v 140 (294)
|..+|++.+||||||.|+||+.+.||+|++++|+|||+|+++++.+++++++|+||+++.. +.+++ +..++ ..+.++
T Consensus 1 m~~~~~~~aiIlA~G~g~R~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~i~~~ 78 (231)
T 1vgw_A 1 MSLKRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADK-VQTAFPQVRVWK 78 (231)
T ss_dssp ---CCCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHH-HHHHCTTSEEEC
T ss_pred CCCCCceEEEEEcccccccCCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH-HHHHH-HHhcCCCceEEE
Confidence 5566889999999999999997679999999999999999999998756999999998765 34455 44443 246666
Q ss_pred CCCCcHHHHHHHHHHhccc-----CCCeEEEecCCCCCCCHHHHHHHHHHHHhcC-cEEEEEEcccceEEeCCCCcEEEe
Q 022657 141 LPGKERQDSVYSGLQEVDF-----NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRT 214 (294)
Q Consensus 141 ~~~~~~~~sv~~al~~~~~-----~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~-~~i~~~~~~~~~~~~~~~G~v~~~ 214 (294)
.++.++.++++.|+..+.. +.+.++++++|+||++++.++++++.+...+ +++++++..++.+.. ++|.+.+.
T Consensus 79 ~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~ 157 (231)
T 1vgw_A 79 NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRA-ESGQISAT 157 (231)
T ss_dssp CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEE-SSSBEEEE
T ss_pred cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccceEEe-CCCceEec
Confidence 6677889999999988742 3578999999999999999999999886554 456677777776554 45778777
Q ss_pred ccccceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 215 LDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 215 ~~~~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
.++..++..++|++|+.+.+.++++.....| +++...++...+.++..++.+..|+|||||+||+.++++++
T Consensus 158 ~~~~~~~~~~~p~~f~~~~l~~~~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 158 VDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp ECCTTEEEEEEEEEEEHHHHHHHHHC----C--CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred CChHHheeeeCCcEecHHHHHHHHHHHhhcC--CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence 7887787788899999887777776543344 66777777777888888887778999999999999998865
No 6
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=100.00 E-value=4e-32 Score=236.58 Aligned_cols=222 Identities=29% Similarity=0.414 Sum_probs=177.7
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 145 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 145 (294)
|++.+||||||+||||+...||+|++++|+|||+|+++++.+++.+++|+||+++...+.+++.+. +..+.++.++.+
T Consensus 1 m~~~~vIlA~G~g~R~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~--~~~v~~~~~~~~ 78 (223)
T 2xwl_A 1 MATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG--GEDSVIVSGGVD 78 (223)
T ss_dssp -CEEEEEECCCCCGGGTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC--BTTEEEEECCSS
T ss_pred CceEEEEECCccCcccCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc--cCCeEEEcCCCC
Confidence 568899999999999996679999999999999999999998755899999999875344444432 234666666667
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHH-HhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA-LRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~-~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
+.+++..|+..++ +.+.++++++|+|+++++.++++++.+ ...++++++++..++.+.++++|.+..+.++..++..+
T Consensus 79 ~~~~i~~al~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~~~~~d~~~~~~~~g~~~~~~e~~~l~~~~ 157 (223)
T 2xwl_A 79 RTESVALALEAAG-DAEFVLVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQ 157 (223)
T ss_dssp HHHHHHHHHTTCT-TCSEEEECCTTCTTCCHHHHHHHHHHHHHTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEEC
T ss_pred HHHHHHHHHHhcC-CCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEEecccceEEEcCCCcEEeecChHHheeee
Confidence 8999999999883 357889999999999999999999988 55566666778777777677678888888888887778
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhhc
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~~ 292 (294)
+|+.|+...+...++.. .++.+++...++...+.++..++.+..|+|||||+||+.++.+++.+++
T Consensus 158 ~p~~f~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~~~ 223 (223)
T 2xwl_A 158 TPQGFHADVLRRAYARA--TAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHHHH 223 (223)
T ss_dssp SCEEEEHHHHHHHHTTC--CSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHTC-
T ss_pred CCcccCHHHHHHHHHHh--hCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhccC
Confidence 99999987666665432 1455677777777778888888877789999999999999999987653
No 7
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=100.00 E-value=1.1e-32 Score=242.16 Aligned_cols=219 Identities=30% Similarity=0.415 Sum_probs=175.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 145 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 145 (294)
.++.|||||||+|+|||.+.||+|++++|+|||+|+++++++++.+++|+||++++..+.+++.+. ++.++.+..++.+
T Consensus 12 ~~~~aiILAaG~s~Rm~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~~~~~gg~~ 90 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-HEKVLGIVEGGDT 90 (234)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-CTTEEEEEECCSS
T ss_pred ccCeEEEEcCcchhhcCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-cCCceEEeCCCCc
Confidence 357899999999999997679999999999999999999998755899999999875333333322 2234556667778
Q ss_pred HHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeecc
Q 022657 146 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 224 (294)
Q Consensus 146 ~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~ 224 (294)
+.+|++.|++.+.+ +.++++++++|+||+++++++++++.+...++.+++++..++++.++++| + ++++++.++..+
T Consensus 91 ~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~g-v-~~~~r~~~~~~~ 168 (234)
T 1vpa_A 91 RSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR-I-EYIPRKGVYRIL 168 (234)
T ss_dssp HHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTE-E-EEECCTTEEEEE
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEecCCcEEEECCCC-c-ccCChhHeeeec
Confidence 99999999998853 35788999999999999999999998866666666777777766655667 7 888888888888
Q ss_pred CCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhh
Q 022657 225 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 225 tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~ 291 (294)
+|+.|+...+.+++.. . +..++...+++..+.++..++.+..|+|||||+||+.++++++.+.
T Consensus 169 ~p~~f~~~~l~~~~~~---~-~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 231 (234)
T 1vpa_A 169 TPQAFSYEILKKAHEN---G-GEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE 231 (234)
T ss_dssp EEEEEEHHHHHHHHTT---C-CCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC
T ss_pred CCccccHHHHHHHHHh---c-CCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhccc
Confidence 9999998877766653 2 3456666777777888888877777999999999999999987654
No 8
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=100.00 E-value=1.7e-31 Score=234.38 Aligned_cols=221 Identities=29% Similarity=0.400 Sum_probs=167.6
Q ss_pred eeEEEEeCCCCCCCCC-CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC--C--ceEEeCC
Q 022657 68 VSVILLAGGRGKRMGA-NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--V--DLKFSLP 142 (294)
Q Consensus 68 i~aIILAaG~gsRmg~-~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~--~--~i~~v~~ 142 (294)
+.+||||||.||||+. ++||+|++++|+|||+|+++++.+++++++|+||+++...+.+++.+..++ . .+.+..+
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKG 82 (236)
T ss_dssp EEEEEEEC-----------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEEC
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECC
Confidence 6799999999999985 678999999999999999999998756999999999875455666665555 2 3345566
Q ss_pred CCcHHHHHHHHHHhcc---c--CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCC-cEEEecc
Q 022657 143 GKERQDSVYSGLQEVD---F--NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES-FVVRTLD 216 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~---~--~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G-~v~~~~~ 216 (294)
+.++.++++.|+..+. . +.++++++++|+||++++.++++++.+.+.++++++++..++++.. ++| ++..+.+
T Consensus 83 ~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 161 (236)
T 2vsh_A 83 GADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVES-TNGQFITDIPN 161 (236)
T ss_dssp CSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEECCSCEEEC-SSSSBCCBCCC
T ss_pred CCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEeccccEEEe-CCCCeeeeecC
Confidence 6788999999998874 2 3478899999999999999999999887766556677877776654 567 7777777
Q ss_pred ccceeeccCCceeChHHHHHHHHhhhhCCcc-cccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhh
Q 022657 217 RKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 217 ~~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~-~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~ 289 (294)
+..++..++|++|+.+.+.++++.....|.. +++...++...+.++..++.+..|+|||||+||..++.+++.
T Consensus 162 ~~~~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~~ 235 (236)
T 2vsh_A 162 RAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEK 235 (236)
T ss_dssp GGGEEEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC-
T ss_pred hHHheeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhhc
Confidence 7777767789999988777777643333444 777666777778889888877789999999999999988754
No 9
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.97 E-value=1.6e-30 Score=229.89 Aligned_cols=214 Identities=34% Similarity=0.469 Sum_probs=164.5
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG 143 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~ 143 (294)
+.|++.+||||||+||||+.. ||+|++++|+|||+|++++ . .++++|+||+++ .. ++ +... .+.++.++
T Consensus 22 ~~M~~~aiILAgG~s~Rm~~~-~K~l~~i~gkpli~~~l~~-~--~~~~~ivvv~~~-~~---~~-~~~~--~v~~~~~~ 90 (236)
T 2px7_A 22 KHMEVSVLIPAAGNGLRLGRG-PKAFLQVGGRTLLEWTLAA-F--RDAAEVLVALPP-GA---EP-PKGL--GAVFLEGG 90 (236)
T ss_dssp --CCCEEEEECCC-------C-CGGGCBCSSSBHHHHHHHH-T--TTCSEEEEEECT-TC---CC-CTTC--SCEEEECC
T ss_pred cCCceEEEEEcCCCCccCCCC-CCeEEEECCEEHHHHHHHh-c--CCCCeEEEEeCH-HH---HH-hhcC--CcEEEeCC
Confidence 347789999999999999965 8999999999999999999 3 479999999996 21 11 2222 34566566
Q ss_pred CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeec
Q 022657 144 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEM 223 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~ 223 (294)
.++..+++.|+..+. .++++++++|+||++++.++.+++.+...++.+++++..++.+..+ +|++.++++++.++.+
T Consensus 91 ~~~~~~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~-~G~v~~~~~~~~~~~~ 167 (236)
T 2px7_A 91 ATRQASVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAPE-GEAYGRVVPREAFRLV 167 (236)
T ss_dssp SSHHHHHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEC-SSSCEEEECGGGCEEE
T ss_pred CchHHHHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEecCCcEEEec-CCeEEecCChHhhccc
Confidence 678999999999886 5788999999999999999999998876666666677777766554 7888888888878778
Q ss_pred cCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhhh
Q 022657 224 QTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 224 ~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~ 291 (294)
++|+.|+.+.+.+.++.....|+++++...+++..+.++..++.+..|+|||||+||+.++++++.+.
T Consensus 168 ~~~~~f~~~~l~~~~~~~~~~g~~~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 235 (236)
T 2px7_A 168 QTPQGFFTALLREAHAYARRKGLEASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS 235 (236)
T ss_dssp CSCEEEEHHHHHHHHHHHHHHTCCCSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC--
T ss_pred cCCeEEcHHHHHHHHHHHHhcCCCchhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhcc
Confidence 88999998877777765544456778877788878888888887778999999999999999987654
No 10
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.95 E-value=1.6e-28 Score=230.74 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=163.8
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 145 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 145 (294)
|++.+||||||+|+||+.+.||+|++++|+|||+|+++++.+++++++|+||++ . .+.+++.+. .+.++.++.+
T Consensus 2 mki~aIILAaG~ssRmg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~-~~~i~~~~~----~v~~v~~g~g 75 (371)
T 1w55_A 2 SEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-N-ITYMKKFTK----NYEFIEGGDT 75 (371)
T ss_dssp CCEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-C-HHHHHTTCS----SSEEEECCSS
T ss_pred CccEEEEECCCCCccCCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-C-HHHHHHHhC----CCEEEeCCCC
Confidence 568999999999999997779999999999999999999998667999999999 4 344443322 2556667778
Q ss_pred HHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccC
Q 022657 146 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQT 225 (294)
Q Consensus 146 ~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~t 225 (294)
+.+|++.|++.++ .+.++++++|+||++++.++++++.+...++++++++..++++.+ ....+++.++..++
T Consensus 76 ~~~sv~~aL~~l~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~vk~v------~~t~~r~~l~~~~~ 147 (371)
T 1w55_A 76 RAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFD------NEALQREKIKLIQT 147 (371)
T ss_dssp HHHHHHHHHTTCC--SSEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEET------TEEECGGGCCEECS
T ss_pred hHHHHHHHHHhcC--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCEEEEEEeecCeeee------eeecCccceeecCC
Confidence 9999999999886 578999999999999999999999877666666677776665432 12346667777789
Q ss_pred CceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 226 PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 226 P~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
|+.|+.+.+.++++. .++ .++...+++..+.++..++.+..++|||||+||+.++ ++.
T Consensus 148 P~~f~~~~l~~~~~~---~~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~ 205 (371)
T 1w55_A 148 PQISKTKLLKKALDQ---NLE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT 205 (371)
T ss_dssp CEEEEHHHHHHHTSS---CCC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred cceecHHHHHHHHHh---ccc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence 999998777766643 223 6777788888888998888777899999999999998 663
No 11
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.95 E-value=1e-26 Score=205.47 Aligned_cols=219 Identities=15% Similarity=0.156 Sum_probs=156.8
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~~ 144 (294)
|++.+||||||.|+||+ ||+|++++|+|||+|+++++.+++.+++|+||+++ +.+.+.+..++..+.... ...
T Consensus 1 m~~~aiIlA~G~~~R~~---~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~---~~i~~~~~~~~~~~~~~~~~~~ 74 (245)
T 1h7e_A 1 SKAVIVIPARYGSSRLP---GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD---PRVEQAVQAFGGKAIMTRNDHE 74 (245)
T ss_dssp CCEEEEEECCSCCSSST---TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC---HHHHHHHHHTTCEEEECCSCCS
T ss_pred CCeEEEEEcCCcCCCCC---CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc---HHHHHHHHHcCCeEEeCCCccC
Confidence 56899999999999996 89999999999999999999987445999999986 345556666665443321 233
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc-C--cEEEEEEcc-------cceEEe-CCCCcEEE
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAK-------ATIKEA-NSESFVVR 213 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~-~--~~i~~~~~~-------~~~~~~-~~~G~v~~ 213 (294)
....++..++..+. .+.++++++|+||++++.++++++.+... + .++++.+.. ..++.+ +++|.+..
T Consensus 75 ~g~~~~~~~~~~~~--~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 152 (245)
T 1h7e_A 75 SGTDRLVEVMHKVE--ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALY 152 (245)
T ss_dssp SHHHHHHHHHHHSC--CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEE
T ss_pred CcHHHHHHHHHhCC--CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCCcEEE
Confidence 45677778887763 57889999999999999999999988665 3 345555541 122222 55677654
Q ss_pred ecc------cc----ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHH--hCCCCEEEEecCCceecCCCHHHHH
Q 022657 214 TLD------RK----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTNIKVTTPDDLL 281 (294)
Q Consensus 214 ~~~------~~----~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~--~~g~~v~~v~~~~~~idVdTpeDL~ 281 (294)
+.+ ++ ..+...++++|+.+.+..+++ .....++++|....+. ..|.++..++.+..|+|||||+||+
T Consensus 153 ~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~-~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~ 231 (245)
T 1h7e_A 153 FSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQ-LPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLE 231 (245)
T ss_dssp EESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGG-SCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHH
T ss_pred eecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHh-CCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHH
Confidence 321 22 144567788999876665442 1112244555444344 5588999888888899999999999
Q ss_pred HHHHHHhhhhcC
Q 022657 282 IAERILNLSSES 293 (294)
Q Consensus 282 ~ae~~l~~~~~~ 293 (294)
.+++++..+..+
T Consensus 232 ~a~~~l~~~~~~ 243 (245)
T 1h7e_A 232 KVRALMAQELAE 243 (245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999999876543
No 12
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.95 E-value=3.9e-26 Score=219.05 Aligned_cols=226 Identities=17% Similarity=0.201 Sum_probs=164.4
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL 141 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~ 141 (294)
||+.|++.|||||||.|+||+.++||+|++++|+|||+|+++++.++ ++++|+|++++.. +.+++++..++..+....
T Consensus 3 ~M~~~~~~aiIlA~G~g~Rl~~~~pK~l~~i~g~pli~~~l~~l~~~-~~~~i~vv~~~~~-~~i~~~~~~~~~~~v~~~ 80 (459)
T 4fce_A 3 AMSNSSMSVVILAAGKGTRMYSDLPKVLHPLAGKPMVQHVIDAAMKL-GAQHVHLVYGHGG-ELLKKTLADPSLNWVLQA 80 (459)
T ss_dssp ----CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCH-HHHHHHC-----CEEECS
T ss_pred ccccCcceEEEECCCCCccCCCCCCcccCeeCCeeHHHHHHHHHHhC-CCCcEEEEeCCCH-HHHHHHhccCCcEEEeCC
Confidence 45568899999999999999988899999999999999999999987 5999999999874 556666555443332223
Q ss_pred CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccce----EEeCCCCcEEEeccc
Q 022657 142 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDR 217 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~----~~~~~~G~v~~~~~~ 217 (294)
...++.++++.|++.+.+ .+.++++++|+||++++.++++++.+.+.++++++.+..++. ...+ +|.+..+.++
T Consensus 81 ~~~g~~~~i~~~~~~~~~-~~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek 158 (459)
T 4fce_A 81 EQLGTGHAMQQAAPHFAD-DEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE-NGDVVGIVEH 158 (459)
T ss_dssp SCCCHHHHHHHHGGGSCT-TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEE-TTEEEEEECG
T ss_pred CCCCcHHHHHHHHHhcCC-CCcEEEEeCCcccCCHHHHHHHHHHHhhCCEEEEEEecCCCCcccEEEeC-CCcEEEEEEC
Confidence 344578999999998863 478999999999999999999999876666667777665542 2233 6788777664
Q ss_pred cce--------eeccCCceeChHHHHHHHHhhh----hCCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHHH
Q 022657 218 KTL--------WEMQTPQVIKPDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIA 283 (294)
Q Consensus 218 ~~l--------~~~~tP~~f~~~~l~~~~~~~~----~~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~a 283 (294)
... +....-+.|+.+.+.+.++... ...++++|....+...|.++..++.+ +.+++||||+||+.+
T Consensus 159 ~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~a 238 (459)
T 4fce_A 159 KDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSAL 238 (459)
T ss_dssp GGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHH
T ss_pred CCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHH
Confidence 211 1111234566665655554321 22367788878888888999998877 347899999999999
Q ss_pred HHHHhhhh
Q 022657 284 ERILNLSS 291 (294)
Q Consensus 284 e~~l~~~~ 291 (294)
+++++.+.
T Consensus 239 e~~l~~~~ 246 (459)
T 4fce_A 239 ERVFQTEQ 246 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 13
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.94 E-value=9.8e-26 Score=202.85 Aligned_cols=217 Identities=13% Similarity=0.175 Sum_probs=149.7
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP- 142 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~- 142 (294)
..|++.|||||||.||||+ +|+|++++|+|||+|+++++.++ ++++|+|+|+. +.+.+.+++++.++.+..+
T Consensus 15 ~~M~~~aIIlA~G~stRlp---~K~L~~i~GkPmi~~~l~~l~~~-~i~~IvV~t~~---~~i~~~~~~~g~~v~~~~~~ 87 (264)
T 3k8d_A 15 SHMSFVVIIPARYASTRLP---GKPLVDINGKPMIVHVLERARES-GAERIIVATDH---EDVARAVEAAGGEVCMTRAD 87 (264)
T ss_dssp ---CCEEEEECCSCCSSST---TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESC---HHHHHHHHHTTCEEEECCTT
T ss_pred CCCceEEEEEcCCCCCCCC---CcceeeECCeEHHHHHHHHHHhC-CCCEEEEECCH---HHHHHHHHHcCCEEEEecCC
Confidence 3478999999999999997 39999999999999999999987 59999999964 4456677777766655422
Q ss_pred CCcHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEccc--------ceEE-eCCCCc
Q 022657 143 GKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA--------TIKE-ANSESF 210 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~--------~~~~-~~~~G~ 210 (294)
.....+.+..++..+. .+.+.++++++|+||++++.++++++.+.+.++ +++++++.+ .++. .+++|+
T Consensus 88 ~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~ 167 (264)
T 3k8d_A 88 HQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGY 167 (264)
T ss_dssp CCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSB
T ss_pred CCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCe
Confidence 2223344666776663 235889999999999999999999999876543 667777654 2333 377888
Q ss_pred EEEecc------cc-----------ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHH--HhCCCCEEEE-ecCCc
Q 022657 211 VVRTLD------RK-----------TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYIT-EGSYT 270 (294)
Q Consensus 211 v~~~~~------~~-----------~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l--~~~g~~v~~v-~~~~~ 270 (294)
+..+-+ ++ ..+....-++|+.+.+...... ....++.++....+ .+.|.++..+ ..+..
T Consensus 168 ~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~ 246 (264)
T 3k8d_A 168 ALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVP 246 (264)
T ss_dssp EEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHS-CCCHHHHHHTCTTHHHHHTTCCEEEEECSCCC
T ss_pred EEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhC-CCChhhhHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 876422 21 1222233456777666554442 11113332222222 3568899886 45677
Q ss_pred eecCCCHHHHHHHHHHHh
Q 022657 271 NIKVTTPDDLLIAERILN 288 (294)
Q Consensus 271 ~idVdTpeDL~~ae~~l~ 288 (294)
|++|||||||++|+++++
T Consensus 247 ~~~IdtpeDl~~a~~~l~ 264 (264)
T 3k8d_A 247 GTGVDTPEDLERVRAEMR 264 (264)
T ss_dssp SCCCCSHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998864
No 14
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.94 E-value=5.6e-26 Score=203.56 Aligned_cols=218 Identities=12% Similarity=0.146 Sum_probs=147.4
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL 141 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~ 141 (294)
|..+|++.+||||||.||||+ ||+|++++|||||+|+++++.++ ++++|+|+|+. +.+++.+++++.++.+..
T Consensus 4 M~~~M~~~aIIlA~G~stRl~---~K~L~~i~GkPli~~~l~~l~~~-~i~~VvVvt~~---~~i~~~~~~~g~~v~~~~ 76 (256)
T 3tqd_A 4 MRGKMEFRVIIPARFDSTRLP---GKALVDIAGKPMIQHVYESAIKS-GAEEVVIATDD---KRIRQVAEDFGAVVCMTS 76 (256)
T ss_dssp -----CCEEEEECCCC---CT---TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESC---HHHHHHHHHTTCEEEECC
T ss_pred cccCCCceEEEEcCCCCCCCC---CCCeeeECCchHHHHHHHHHHhC-CCCEEEEECCH---HHHHHHHHHcCCeEEEeC
Confidence 555689999999999999997 69999999999999999999986 69999999974 446667777776665543
Q ss_pred C-CCcHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhc---CcEEEEEEccc--------ce-EEeCC
Q 022657 142 P-GKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRV---GAAVLGVPAKA--------TI-KEANS 207 (294)
Q Consensus 142 ~-~~~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~---~~~i~~~~~~~--------~~-~~~~~ 207 (294)
+ .....+.+..|++.+. .+.+.++++++|+||++++.++++++.+.+. +.++++.+..+ .+ +..++
T Consensus 77 ~~~~~Gt~~i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~ 156 (256)
T 3tqd_A 77 SDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNR 156 (256)
T ss_dssp TTCCSHHHHHHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECT
T ss_pred CCCCCcHHHHHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECC
Confidence 2 2333456888888874 2357899999999999999999999998753 34566676532 12 23467
Q ss_pred CCcEEEecc------cc------------ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHH--HHhCCCCEEEEec
Q 022657 208 ESFVVRTLD------RK------------TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEG 267 (294)
Q Consensus 208 ~G~v~~~~~------~~------------~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~--l~~~g~~v~~v~~ 267 (294)
+|++..+-+ ++ ..+..-.-++|+.+.+...... ....++.++..+. +...|.++..+..
T Consensus 157 ~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l-~~s~lE~~e~leqlr~le~G~~i~~~~~ 235 (256)
T 3tqd_A 157 RNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSW-DACPAEKMEALEQLRILWHGGRIHMVVA 235 (256)
T ss_dssp TSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred CCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhC-CCCcccchhhhHHHHHHHCCCeEEEEEe
Confidence 888765422 21 1223333467777766554432 1111322222122 2356889998887
Q ss_pred CC-ceecCCCHHHHHHHHHHH
Q 022657 268 SY-TNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 268 ~~-~~idVdTpeDL~~ae~~l 287 (294)
+. .|+||||||||+++++++
T Consensus 236 ~~~~~~~idtpeDl~~a~~~~ 256 (256)
T 3tqd_A 236 KSKCPPGVDTEEDLERVRAYF 256 (256)
T ss_dssp SSCCCCCCSSHHHHHHHHTTC
T ss_pred CCCCCCCcCCHHHHHHHHHhC
Confidence 75 589999999999998753
No 15
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.94 E-value=4.9e-26 Score=194.21 Aligned_cols=195 Identities=21% Similarity=0.198 Sum_probs=140.9
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL 141 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~ 141 (294)
|++ |++.+||||||.|+|||. ||+|++++|+|||+|+++++..+ ++++|+||+++.. +.+.+.+..++..+....
T Consensus 1 m~~-~~~~~iIlA~G~~~R~g~--~K~l~~~~g~pli~~~l~~l~~~-~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~ 75 (199)
T 2waw_A 1 MLR-SRVTGVVLAAGYSRRLGT--PKQLLPLGDTTLLGATLAMARRC-PFDQLIVTLGGAA-DEVLEKVELDGLDIVLVD 75 (199)
T ss_dssp -CC-CCEEEEEEESSCCTTTTS--CGGGCEETTEEHHHHHHHHHHTS-SCSEEEEEECTTH-HHHHHHSCCTTSEEEECC
T ss_pred CCC-CceEEEEECCCCCCCCCC--CEEeCEeCccCHHHHHHHHHHhC-CCCcEEEEeCCCH-HHHHHHhccCCCEEEECC
Confidence 443 779999999999999984 89999999999999999999987 4899999999864 455665555554443322
Q ss_pred C-CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccce
Q 022657 142 P-GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTL 220 (294)
Q Consensus 142 ~-~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l 220 (294)
+ ..++.++++.|+..+..+.+.++++++|+|+++++.++++++. ..++.+ +++.. +|..
T Consensus 76 ~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~-~~~~~--------~g~~--------- 135 (199)
T 2waw_A 76 DAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG--GRGATI-AVCEY--------ANGI--------- 135 (199)
T ss_dssp CCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSE-EEEEE--------TTEE---------
T ss_pred CcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCE-EEEec--------CCcc---------
Confidence 2 2345889999999884335789999999999999999999987 333322 22221 1210
Q ss_pred eeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHHHHHHHHhh
Q 022657 221 WEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 221 ~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~~ae~~l~~ 289 (294)
.+|..|+.+.+....... +. .....++...+.++..++.+ ..|+|||||+||+.++++++.
T Consensus 136 ---~~P~~~~~~~l~~~~~~~---~~--~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~~ 197 (199)
T 2waw_A 136 ---GHPFWVSRGVFGDLAELH---GD--KGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVVR 197 (199)
T ss_dssp ---EEEEEEEGGGHHHHHTCS---ST--TCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHHH
T ss_pred ---cCCEEEcHHHHHHHHhcC---CC--HHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHhh
Confidence 156778876665554321 11 12345667777778877764 479999999999999988763
No 16
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.94 E-value=9.8e-26 Score=201.64 Aligned_cols=216 Identities=15% Similarity=0.123 Sum_probs=153.6
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHH-HHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CCCc
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSF-YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKE 145 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i-~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~~~ 145 (294)
+.+||||||.||||+. |+|++++|+|||+|++ +++.++ ++++|+|+|++ +.+.+.+..++.++.+.. ....
T Consensus 2 ~~aiIlA~G~stR~~~---K~L~~i~GkPli~~~i~~~~~~~-~~~~vvVvt~~---~~i~~~~~~~g~~v~~~~~~~~~ 74 (253)
T 4fcu_A 2 KHIVIPARFSSSRLPG---KPLLLIHDRPMILRVVDQAKKVE-GFDDLCVATDD---ERIAEICRAEGVDVVLTSADHPS 74 (253)
T ss_dssp EEEEEECCSCCTTSTT---GGGSEETTEEHHHHHHHHHHTCT-TCCEEEEEESC---HHHHHHHHTTTCCEEECCTTCCC
T ss_pred eEEEEEeCCCCCCCCC---CceeeECCeEhHHHHHHHHHHhc-CCCEEEEECCH---HHHHHHHHHcCCeEEEeCCCCCC
Confidence 5799999999999985 9999999999999999 999886 69999999985 345666667776665543 2333
Q ss_pred HHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhc-Cc--EEEEEEccc--------ceE-EeCCCCcEE
Q 022657 146 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRV-GA--AVLGVPAKA--------TIK-EANSESFVV 212 (294)
Q Consensus 146 ~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~-~~--~i~~~~~~~--------~~~-~~~~~G~v~ 212 (294)
..+++..|+..+.. +.++++++++|+||++++.|+++++.+.+. ++ +.++.+..+ .++ ..+++|++.
T Consensus 75 Gt~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l 154 (253)
T 4fcu_A 75 GTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEAL 154 (253)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEE
T ss_pred hHHHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEE
Confidence 45678888887752 358999999999999999999999998765 22 334455321 122 346778876
Q ss_pred Eecc------cc-----------ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHH--hCCCCEEEEecCCc-ee
Q 022657 213 RTLD------RK-----------TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NI 272 (294)
Q Consensus 213 ~~~~------~~-----------~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~--~~g~~v~~v~~~~~-~i 272 (294)
.+.+ ++ .++....-++|+.+.+..... .....++.++....++ +.|.++..+..+.. |+
T Consensus 155 ~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~-~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~ 233 (253)
T 4fcu_A 155 YFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVT-WEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPP 233 (253)
T ss_dssp EEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTT-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCC
T ss_pred EecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHh-CCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCC
Confidence 5321 22 112222345777776655432 2112244444434333 56999999888777 99
Q ss_pred cCCCHHHHHHHHHHHhhhh
Q 022657 273 KVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 273 dVdTpeDL~~ae~~l~~~~ 291 (294)
+||||+||+.|+++++.|.
T Consensus 234 ~IdtpeDL~~a~~~l~~r~ 252 (253)
T 4fcu_A 234 GVDTQADLDRLNNMPVESF 252 (253)
T ss_dssp CCCSHHHHHHHHTSCGGGG
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999998775
No 17
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.94 E-value=5.7e-27 Score=205.25 Aligned_cols=208 Identities=18% Similarity=0.186 Sum_probs=142.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC----
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---- 141 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~---- 141 (294)
|++.+||||||.|+||+ ||+|++++|+|||+|+++++.+++.+++|+|+++++ .+.+.+.+++..+ +..
T Consensus 3 m~~~aiIlA~G~g~R~~---~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~-~~~~~~~ 75 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP---LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGG---LIAEEAKNFGVEV-VLRPAEL 75 (228)
T ss_dssp CEEEEEEECCSSCSSST---TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCH---HHHHHHHHTTCEE-EECCC--
T ss_pred CceEEEEecCCCCCCCC---CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCH---HHHHHHHHcCCEE-EeCchHH
Confidence 67899999999999999 799999999999999999999875589999999753 3445555666544 222
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEccc-ceEE--eCCCCcEEEe
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIKE--ANSESFVVRT 214 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~-~~~~--~~~~G~v~~~ 214 (294)
++.++.++++.|+..+..+.+.++++++|+||++++.++++++.+... ++++++.+..+ +++. ++++|.+..+
T Consensus 76 ~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~ 155 (228)
T 1ezi_A 76 ASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPM 155 (228)
T ss_dssp ----CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECC--CEEES
T ss_pred cCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcceeeEEcCCCcEeec
Confidence 455678999999998853357899999999999999999999876544 45666777665 2332 2556777666
Q ss_pred ccccceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHHHh---CCCCEEEEecC-CceecCCCHHHHHHHHHHHhh
Q 022657 215 LDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH---LKHPVYITEGS-YTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 215 ~~~~~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~---~g~~v~~v~~~-~~~idVdTpeDL~~ae~~l~~ 289 (294)
.+++.++ +....+...+. ...|.++++...+.+. .|.++..+..+ ..|+|||||+||+.++++++.
T Consensus 156 ~~~~~~~-------~~~~~~~~~~~--~~~giy~~~~~~l~~~~~~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 156 RHLSDLE-------QPRQQLPQAFR--PNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp SCHHHHT-------CCGGGSCCEEE--EEEEEEEEEHHHHHHHTSSCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred ccccccc-------CCcccCchhhe--eeeEEEEEeHHHHhhCCcccCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 5533211 01000000000 0123344444444443 46676655544 579999999999999998865
No 18
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.94 E-value=2.1e-25 Score=199.06 Aligned_cols=217 Identities=13% Similarity=0.170 Sum_probs=151.9
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-CC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~-~~ 144 (294)
|++.+||||||.||||+ ||+|++++|+|||+|+++++.++ ++++|+|++++ +.+.++++.++.++.+..+ ..
T Consensus 1 M~~~aiIlA~G~stRlp---~K~L~~i~GkPli~~~l~~l~~~-~~~~ivVv~~~---~~i~~~~~~~g~~v~~~~~~~~ 73 (252)
T 3oam_A 1 MSFTVVIPARYQSTRLP---GKPLADIGGKPMIQWVYEQAMQA-GADRVIIATDD---ERVEQAVQAFGGVVCMTSPNHQ 73 (252)
T ss_dssp CCEEEEEECCCCCSSST---TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESC---HHHHHHHHHTTCEEEECCTTCC
T ss_pred CceEEEEecCcCCCCCC---CcceeeECCEEHHHHHHHHHHhC-CCCeEEEECCH---HHHHHHHHHcCCEEEEcCCCCC
Confidence 67899999999999997 59999999999999999999987 59999999964 4566677777766655432 22
Q ss_pred cHHHHHHHHHHhcc-cCCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccc---------eEEeCCCCcEE
Q 022657 145 ERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT---------IKEANSESFVV 212 (294)
Q Consensus 145 ~~~~sv~~al~~~~-~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~---------~~~~~~~G~v~ 212 (294)
.....+..++..+. .+.+.++++++|+||+++++++++++.+.+. ++++++.++.++ .+..+++|++.
T Consensus 74 ~Gt~~~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~ 153 (252)
T 3oam_A 74 SGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYAL 153 (252)
T ss_dssp SHHHHHHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEE
T ss_pred CcHHHHHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEE
Confidence 23444777777763 2357899999999999999999999998764 345666666532 23456778887
Q ss_pred Eecc------cc-----------ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHHH--HhCCCCEEEEec-CCcee
Q 022657 213 RTLD------RK-----------TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEG-SYTNI 272 (294)
Q Consensus 213 ~~~~------~~-----------~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l--~~~g~~v~~v~~-~~~~i 272 (294)
.+.+ ++ ..+.....++|+.+.+........ ..++..+....+ ...|.++..+.. +..|+
T Consensus 154 ~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~-~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~ 232 (252)
T 3oam_A 154 YFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQP-SQLEKIECLEQLRVLWHGEKIHVAVALEAPPA 232 (252)
T ss_dssp EEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCC-CHHHHHHTCTTHHHHHTTCCEEEEECSSCCCC
T ss_pred EEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCC-CcccccchhHHHHHHHCCCeEEEEEecCCCCC
Confidence 6421 11 122333456777776665544311 111111111112 345888887644 46789
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 022657 273 KVTTPDDLLIAERILNLS 290 (294)
Q Consensus 273 dVdTpeDL~~ae~~l~~~ 290 (294)
|||||+||+.|+++++.+
T Consensus 233 ~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 233 GVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCCSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999999875
No 19
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.94 E-value=1.3e-25 Score=191.58 Aligned_cols=191 Identities=16% Similarity=0.145 Sum_probs=135.6
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CC
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PG 143 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~ 143 (294)
+|++.+||||||.|+||| .||+|++++|+|||+|+++++.++ ++++|+||+++.. +.+.+.+..++..+.... ..
T Consensus 3 ~~~~~~iIlA~G~~~R~g--~~K~l~~~~g~pll~~~l~~l~~~-~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (197)
T 2wee_A 3 ATQITGVVLAAGRSNRLG--TPKQLLPYRDTTVLGATLDVARQA-GFDQLILTLGGAA-SAVRAAMALDGTDVVVVEDVE 78 (197)
T ss_dssp CSEEEEEEEECCCCTTTS--SCGGGSEETTEEHHHHHHHHHHHT-TCSEEEEEECTTH-HHHHHHSCCTTSEEEECC---
T ss_pred CCceEEEEECCCCcccCC--CCeEcCeeCCccHHHHHHHHHHhc-CCCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcc
Confidence 478999999999999997 489999999999999999999986 5899999999874 455555554454333222 22
Q ss_pred CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeec
Q 022657 144 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEM 223 (294)
Q Consensus 144 ~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~ 223 (294)
.++.++++.|+..+..+.+.++++++|+|+++++.++++++. . .++.+ +++.. +|..
T Consensus 79 ~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~-~~~~i-~~~~~--------~g~~------------ 135 (197)
T 2wee_A 79 RGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV-G-PATEI-MVCRY--------ADGV------------ 135 (197)
T ss_dssp -CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH-G-GGSSE-EEEEE--------TTEE------------
T ss_pred cCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh-c-CCCCE-EEEec--------CCCc------------
Confidence 356899999999884234688999999999999999999987 3 33322 22321 2311
Q ss_pred cCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHHHHHHHH
Q 022657 224 QTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 224 ~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~~ae~~l 287 (294)
.+|..|+.+.+...... .+.. ....+++..+.++..++.+ ..|+|||||+||+.+++++
T Consensus 136 ~~P~~~~~~~l~~l~~~---~~~~--~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 136 GHPFWFSRTVFGELARL---HGDK--GVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp EEEEEEEGGGHHHHHTC---CSTT--HHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred CCCEEECHHHHHHHHhC---CCCh--hHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 25778887655554421 1110 1235666667778777764 4799999999999987654
No 20
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.93 E-value=1.5e-24 Score=207.74 Aligned_cols=220 Identities=18% Similarity=0.209 Sum_probs=162.1
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--C
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--P 142 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~ 142 (294)
+|++.|||||||.|+||+...||+|++++|+|||+|+++++.++ ++++|+|++++.. +.+.+++..++ +.++. .
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~-~~i~~~~~~~~--~~~v~~~~ 78 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQL-GSENIHLIYGHGG-DLMRTHLANEQ--VNWVLQTE 78 (456)
T ss_dssp -CCEEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHT-TCSCEEEEECTTH-HHHHHHTTTCC--CEEEECSC
T ss_pred CCcceEEEECCCCCcccCCCCCccccEECCccHHHHHHHHHHhC-CCCcEEEEeCCCH-HHHHHHhhcCC--cEEEeCCC
Confidence 47899999999999999977899999999999999999999986 5999999999864 55666655443 34442 3
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccce----EEeCCCCcEEEecccc
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRK 218 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~----~~~~~~G~v~~~~~~~ 218 (294)
..+..++++.|++.+.. .+.++++++|+||++++.++++++.+.+.+.++++.+..++. ...+ +|.+..+.++.
T Consensus 79 ~~g~~~~~~~~~~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~ 156 (456)
T 2v0h_A 79 QLGTAHAVQQAAPFFKD-NENIVVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRE-NGNVVAIVEQK 156 (456)
T ss_dssp CCCHHHHHHHHGGGCCT-TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSSCTTSCEEEEE-TTEEEEEECTT
T ss_pred CCCcHHHHHHHHHhcCC-CCeEEEEcCCcceeCHHHHHHHHHHHhcCCEEEEEeecCCCCccceEEEc-CCcEEEEEECC
Confidence 34578999999998853 478899999999999999999999875544455555554431 2224 67777776653
Q ss_pred ce-------eec-cCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHHHH
Q 022657 219 TL-------WEM-QTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAE 284 (294)
Q Consensus 219 ~l-------~~~-~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~ae 284 (294)
.. +.. ..++.|+.+.+.++++.... ..+.++|....+...|.++..++.+ ..+++||||+||+.++
T Consensus 157 ~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~ 236 (456)
T 2v0h_A 157 DANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALE 236 (456)
T ss_dssp TCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHH
T ss_pred CCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHH
Confidence 21 111 23577887766666643221 2356777777777788888887764 3478999999999999
Q ss_pred HHHhhh
Q 022657 285 RILNLS 290 (294)
Q Consensus 285 ~~l~~~ 290 (294)
+++..+
T Consensus 237 ~~l~~~ 242 (456)
T 2v0h_A 237 RYFQNK 242 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 21
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.93 E-value=2.5e-24 Score=188.70 Aligned_cols=211 Identities=16% Similarity=0.168 Sum_probs=143.6
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC-CC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~-~~ 144 (294)
|++.|||||||.|+||+ ||+|++++|+|||+|+++++.++ +++|+|++++ +.+.++++++ ..+.+..+ ..
T Consensus 1 m~~~aiIlA~G~g~R~~---~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~---~~i~~~~~~~-~~~~~~~~~~~ 71 (234)
T 2y6p_A 1 MRRAVIIPARLGSTRLK---EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDS---ERVKEVVEDL-CEVFLTPSDLP 71 (234)
T ss_dssp -CEEEEEECCSCCTTTT---TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESC---HHHHHHHTTT-SEEEECCTTCC
T ss_pred CceEEEEEcCCCCCCCC---CCcceeECCEEHHHHHHHHHHHh--CCEEEEECCh---HHHHHHHHhc-eEEEECCcccc
Confidence 56889999999999998 79999999999999999999975 8999999987 3345555544 44433322 22
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEE-EEEc------ccceEE-eCCCCcEEEecc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL-GVPA------KATIKE-ANSESFVVRTLD 216 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~-~~~~------~~~~~~-~~~~G~v~~~~~ 216 (294)
....++..+++.+. .+.++++++|+|+++++.++++++.+.+.++.++ +.+. ...+.. .+++|.+..+.+
T Consensus 72 ~g~~~~~~~~~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~e 149 (234)
T 2y6p_A 72 SGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKVVLDREGYALYFSR 149 (234)
T ss_dssp SHHHHHHHHHTTCC--CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEEEECTTSBEEEEES
T ss_pred cchHHHHHHHHhCC--CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEEEEcCCCCEeeeec
Confidence 33444556777664 5789999999999999999999998876554333 2221 122222 256788765543
Q ss_pred c------c----ceeeccCCceeChHHHHHHHHhhhhCCcccccHHHH--HHhCCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 217 R------K----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 217 ~------~----~l~~~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~--l~~~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
+ . ..+...++++|+.+.+....... ...+..++.... +...|.++..++.+..|+|||||+||..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~ 228 (234)
T 2y6p_A 150 SPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMP-PSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVE 228 (234)
T ss_dssp SCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSC-CCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHH
T ss_pred CCCCcccccccceeeEEEEEEEcCHHHHHHHHhCC-CCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHH
Confidence 2 1 13445678888887665544321 110111111111 223477888888888899999999999999
Q ss_pred HHHh
Q 022657 285 RILN 288 (294)
Q Consensus 285 ~~l~ 288 (294)
.+++
T Consensus 229 ~~~~ 232 (234)
T 2y6p_A 229 EKLK 232 (234)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8875
No 22
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.92 E-value=1.6e-23 Score=201.56 Aligned_cols=219 Identities=17% Similarity=0.186 Sum_probs=160.9
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC--CCC
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGK 144 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--~~~ 144 (294)
+..+||||||.|+||+..+||+|++++|+|||+|+++++.++ ++++|+|++++.. +.+.+.+.. .+.++. ...
T Consensus 11 ~~~~vIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~-~~i~~~~~~---~i~~v~~~~~~ 85 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKA-ELVEEVLAG---QTEFVTQSEQL 85 (468)
T ss_dssp CEEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTH-HHHHHSSSS---SSEEEECSSCC
T ss_pred CCcEEEEcCCCCccCCCCCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCH-HHHHHHhCC---CcEEEeCCccC
Confidence 467999999999999877899999999999999999999987 6999999999874 444444332 344443 234
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc----eEEeCCCCcEEEecccc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDRK 218 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~----~~~~~~~G~v~~~~~~~ 218 (294)
++..+++.|+..+.++.+.++++++|+||++++.++++++.+.+.++ .+++.+..++ ....+++|++..+.++.
T Consensus 86 G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~g~v~~~~ek~ 165 (468)
T 1hm9_A 86 GTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQK 165 (468)
T ss_dssp CHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECTT
T ss_pred ChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCCCCEEEEEECC
Confidence 67899999998886435788999999999999999999998876543 4445555433 23346678888776642
Q ss_pred --------ceeeccCCceeChHHHHHHHHhhhhC---C-cccccHHHHHHhCCCCEEEEecCCce--ecCCCHHHHHHHH
Q 022657 219 --------TLWEMQTPQVIKPDLLKKGFELVNRE---G-LEVTDDVSIVEHLKHPVYITEGSYTN--IKVTTPDDLLIAE 284 (294)
Q Consensus 219 --------~l~~~~tP~~f~~~~l~~~~~~~~~~---g-~~~td~~~~l~~~g~~v~~v~~~~~~--idVdTpeDL~~ae 284 (294)
..+....+++|+.+.+.+.+...... + ++++|....+...|.++..+..+..| ++||||+||..++
T Consensus 166 ~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~ 245 (468)
T 1hm9_A 166 DATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAE 245 (468)
T ss_dssp TCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHH
T ss_pred CCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHH
Confidence 12334567889887666665433221 2 55677666666778888877766555 5588999999999
Q ss_pred HHHhhh
Q 022657 285 RILNLS 290 (294)
Q Consensus 285 ~~l~~~ 290 (294)
+++..+
T Consensus 246 ~~~~~~ 251 (468)
T 1hm9_A 246 SVMRRR 251 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 23
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.91 E-value=1.8e-23 Score=187.90 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=153.0
Q ss_pred CcccccCCceeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh---h
Q 022657 59 GSVVVKDKSVSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---K 132 (294)
Q Consensus 59 ~~~m~~~~~i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~---~ 132 (294)
+..|+..+++.|||||||.|+||+. .+||+|++++|+|||+|+++++.++ ++++|+|++++...+.+.+++. .
T Consensus 16 ~~~~~~~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~~~~~~~~~~~ 94 (269)
T 4ecm_A 16 ENLYFQSNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQC-DITDIMIITGKEHMGDVVSFLGSGQE 94 (269)
T ss_dssp ----C---CEEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGG
T ss_pred ccccccccCcEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHC-CCCEEEEECChhhHHHHHHHHhhccc
Confidence 3446666789999999999999975 6899999999999999999999987 6999999999764344555554 2
Q ss_pred cCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEcccc----eEE
Q 022657 133 INVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKE 204 (294)
Q Consensus 133 ~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~~----~~~ 204 (294)
++.++.++. ...+..++++.|+..+. .+.++++.+|+|+. ..+.++++.+.+.+ +.+++.+..++ +..
T Consensus 95 ~~~~i~~~~~~~~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 170 (269)
T 4ecm_A 95 FGVSFTYRVQDKAGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVAN 170 (269)
T ss_dssp GTCEEEEEECSSCCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEE
T ss_pred cCceEEEeeCCccCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEE
Confidence 444555553 23456889999988876 46788889999874 67899999886543 34555554432 233
Q ss_pred eCCCCcEEEeccccc----eeeccCCceeChHHHHHHHHhhh---hCCcccccHHHHHHhCCCCEEEEecCCceecCCCH
Q 022657 205 ANSESFVVRTLDRKT----LWEMQTPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP 277 (294)
Q Consensus 205 ~~~~G~v~~~~~~~~----l~~~~tP~~f~~~~l~~~~~~~~---~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTp 277 (294)
.+ +|.|..+.++.. .+.....++|+.+.+ +.+.... ...+++++....+...+ ++..+..+..|+|||||
T Consensus 171 ~d-~g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~ 247 (269)
T 4ecm_A 171 IQ-NRKIIEIEEKPKEPKSSYAVTGIYLYDSKVF-SYIKELKPSARGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTH 247 (269)
T ss_dssp EE-TTEEEEEEESCSSCSCSEEEEEEEEECTTHH-HHHTSCCBCTTSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSH
T ss_pred Ec-CCEEEEEEECCCCCCCcEEEEEEEEECHHHH-HhhhhcCCCCCCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCH
Confidence 34 477776654321 111122346776644 3343221 12255666555555556 77777777889999999
Q ss_pred HHHHHHHHHHhhhhc
Q 022657 278 DDLLIAERILNLSSE 292 (294)
Q Consensus 278 eDL~~ae~~l~~~~~ 292 (294)
+||..|++.+.....
T Consensus 248 ~dl~~a~~~l~~~~~ 262 (269)
T 4ecm_A 248 VSLQRANALARDINF 262 (269)
T ss_dssp HHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876543
No 24
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.91 E-value=7.2e-23 Score=183.10 Aligned_cols=216 Identities=15% Similarity=0.225 Sum_probs=140.0
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~~ 144 (294)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++++ .+.+.+..++..+.... ...
T Consensus 1 m~~~aiIlA~G~g~R~~---~K~l~~~~gkpli~~~l~~l~~~-~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~ 73 (262)
T 1vic_A 1 MSFTVIIPARFASSRLP---GKPLADIKGKPMIQHVFEKALQS-GASRVIIATDNE---NVADVAKSFGAEVCMTSVNHN 73 (262)
T ss_dssp -CCEEEEECCCCCSSST---TGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESCH---HHHHHHHHTTCEEEECCCSSC
T ss_pred CCcEEEEEcCCCCCCCC---CCccccCCCeEHHHHHHHHHHhC-CCceEEEECCcH---HHHHHHHhcCCEEEECCcccc
Confidence 46789999999999997 49999999999999999999987 579999999863 34556666665442221 112
Q ss_pred cHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhc--CcEEEEEEcccc--------eEEe-CCCCcEE
Q 022657 145 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IKEA-NSESFVV 212 (294)
Q Consensus 145 ~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~--~~~i~~~~~~~~--------~~~~-~~~G~v~ 212 (294)
....++..++..+.. +.+.++++++|+||++++.++++++.+.+. ++++++.+..++ .+.+ +++|.+.
T Consensus 74 ~g~~~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 153 (262)
T 1vic_A 74 SGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVL 153 (262)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEE
T ss_pred CChHHHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEe
Confidence 222344445554432 357899999999999999999999988654 445667776553 2222 5567775
Q ss_pred Eecc------cccee-------eccCCc---------eeChHHHHHHHHhhhh--CCcccccHHHHHHhCCCCEEEEecC
Q 022657 213 RTLD------RKTLW-------EMQTPQ---------VIKPDLLKKGFELVNR--EGLEVTDDVSIVEHLKHPVYITEGS 268 (294)
Q Consensus 213 ~~~~------~~~l~-------~~~tP~---------~f~~~~l~~~~~~~~~--~g~~~td~~~~l~~~g~~v~~v~~~ 268 (294)
.+.. ++. + ..++|+ +|+.+.+......... ...++.+... +...|.++..++.+
T Consensus 154 ~f~~~~~~~~r~~-~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~-~l~~g~~v~~~~~~ 231 (262)
T 1vic_A 154 YFSRSVIPYDRDQ-FMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLR-VLYNGERIHVELAK 231 (262)
T ss_dssp EEESSCSSCCHHH-HTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHH-HHHTTCCEEEEECS
T ss_pred eeecCCCCcCCcc-ccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHH-HHHCCCeEEEEEeC
Confidence 4322 211 1 113442 4444444332211000 0011111112 23358889988887
Q ss_pred -CceecCCCHHHHHHHHHHHhhh
Q 022657 269 -YTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 269 -~~~idVdTpeDL~~ae~~l~~~ 290 (294)
..|+|||||+||+.|+.+++..
T Consensus 232 ~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 232 EVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp SCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc
Confidence 7899999999999999998753
No 25
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.91 E-value=2e-24 Score=185.61 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=122.9
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-C--
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-P-- 142 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~-- 142 (294)
|++.+||||||+|+|||. ||+|++++|+|||+|+++++... +|+||+++.. +.+.+.+. .+ + ++. .
T Consensus 1 M~~~~iIlAgG~g~Rmg~--~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~-~~~~~~~~-~~--~-~v~~~~~ 69 (197)
T 3d5n_A 1 MNIGVIILAAGEGKRFGG--DKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYV-NEMLPLLM-DQ--I-VIYNPFW 69 (197)
T ss_dssp CCEEEEEECSCCTTCCCS--SGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTH-HHHGGGCT-TS--C-EEECTTG
T ss_pred CceEEEEECCcCcccCCC--CeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCH-HHHHHHhc-CC--E-EEECCCC
Confidence 458899999999999986 89999999999999999999753 8889998863 44443332 23 3 332 2
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceee
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE 222 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~ 222 (294)
..++..|++.|++.+.+ .+.++++++|+||++++.++++++.+ ..++.+ +++.. +|.
T Consensus 70 ~~G~~~si~~al~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~-~~~~~--------~g~------------ 126 (197)
T 3d5n_A 70 NEGISTSLKLGLRFFKD-YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA-VIPTH--------KGE------------ 126 (197)
T ss_dssp GGCHHHHHHHHHHHTTT-SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE-EEEEE--------TTE------------
T ss_pred CCCHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE-EEEEe--------CCc------------
Confidence 24578999999998863 37889999999999999999999876 333222 22321 121
Q ss_pred ccCCceeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC--CceecCCCHHHHHHHHHHHhhhh
Q 022657 223 MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 223 ~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~--~~~idVdTpeDL~~ae~~l~~~~ 291 (294)
..+|+.|+.+.+...... .|. ++...+++..+.++..++.+ ..|+||||||||+.+++.+....
T Consensus 127 ~~~P~~~~~~~l~~l~~l---~g~--~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~~~ 192 (197)
T 3d5n_A 127 RGNPVLISKSLFNEIEKL---RGD--VGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHPLEH 192 (197)
T ss_dssp ECSCEEEEHHHHHHHHHC---CTT--CCTHHHHTTSCGGGEEEEECCGGGTCCTTTC--------------
T ss_pred ccCCEEECHHHHHHHHcc---CCC--ccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhcccc
Confidence 126889998766665532 221 23446676666667766654 35799999999999988776543
No 26
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.91 E-value=3.1e-23 Score=189.05 Aligned_cols=219 Identities=19% Similarity=0.268 Sum_probs=150.9
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEE
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKF 139 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~ 139 (294)
|++.+||||||.||||+ ..+||+|++++|+|||+|+++.+..+ ++++|+||+++...+.++++++. ++.++.+
T Consensus 1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~ 79 (293)
T 1fxo_A 1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDGSNWGLDLQY 79 (293)
T ss_dssp -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEE
T ss_pred CCceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHC-CCCEEEEEeccccHHHHHHHHhcccccCceEEE
Confidence 46789999999999998 34689999999999999999999986 69999988865434566766654 5655655
Q ss_pred eC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh--cCcEEEEEEcccce----EEeCCCCcE
Q 022657 140 SL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFV 211 (294)
Q Consensus 140 v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~--~~~~i~~~~~~~~~----~~~~~~G~v 211 (294)
+. ...+...++..|+..+.+ +.++++.+|+||.+ ..+.++++.+.+ .++.+++.++.++. ...+++|++
T Consensus 80 ~~~~~~~G~~~al~~a~~~i~~--~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v 156 (293)
T 1fxo_A 80 AVQPSPDGLAQAFLIGESFIGN--DLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKA 156 (293)
T ss_dssp EECSSCCCGGGHHHHTHHHHTT--SEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCE
T ss_pred eeCCCCCCHHHHHHHHHHHhCC--CCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCCCcE
Confidence 53 234568889999888752 44444559999987 688999988753 35566666765542 334667887
Q ss_pred EEeccc----cceeeccCCceeChHHHHHHHHhhh-hCC-cccccHHHHHHhCCCCEEEE-ecCC-ceecCCCHHHHHHH
Q 022657 212 VRTLDR----KTLWEMQTPQVIKPDLLKKGFELVN-REG-LEVTDDVSIVEHLKHPVYIT-EGSY-TNIKVTTPDDLLIA 283 (294)
Q Consensus 212 ~~~~~~----~~l~~~~tP~~f~~~~l~~~~~~~~-~~g-~~~td~~~~l~~~g~~v~~v-~~~~-~~idVdTpeDL~~a 283 (294)
..+.++ ...+....++.|+.+.+..+.+... ..| ++++|....+...| ++... .... .|+|||||+||..|
T Consensus 157 ~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a 235 (293)
T 1fxo_A 157 ISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEA 235 (293)
T ss_dssp EEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHH
T ss_pred EEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHHHHHhcC-CeEEEEeCCCCEEEcCCCHHHHHHH
Confidence 665432 1124455678888876544333211 123 56677655555555 34433 3334 59999999999999
Q ss_pred HHHHhh
Q 022657 284 ERILNL 289 (294)
Q Consensus 284 e~~l~~ 289 (294)
+++++.
T Consensus 236 ~~~~~~ 241 (293)
T 1fxo_A 236 GQFIAT 241 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 27
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.91 E-value=9.4e-23 Score=186.13 Aligned_cols=218 Identities=17% Similarity=0.272 Sum_probs=151.4
Q ss_pred eeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeC
Q 022657 68 VSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~ 141 (294)
+.+||||||.||||+ ..+||+|++++|+|||+|+++.+..+ ++++|+||+++...+.+++++.. ++.++.++.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~ 82 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRV 82 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEE
T ss_pred eEEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHC-CCCeEEEEeccchHHHHHHHhhhccccCceEEEee
Confidence 469999999999998 45799999999999999999999986 69999998875444667776654 565565553
Q ss_pred C--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh--cCcEEEEEEcccce----EEeCCCCcEEE
Q 022657 142 P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVR 213 (294)
Q Consensus 142 ~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~--~~~~i~~~~~~~~~----~~~~~~G~v~~ 213 (294)
+ ..+...++..|+..+.+ .+++++. +|+||++ ..+.++++.+.+ .++.+++.++.++. ...+++|++..
T Consensus 83 ~~~~~G~~~al~~a~~~i~~-~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~ 159 (295)
T 1lvw_A 83 QEEPRGIADAFIVGKDFIGD-SKVALVL-GDNVFYG-HRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVIS 159 (295)
T ss_dssp CSSCCCGGGHHHHTHHHHTT-SCEEEEE-TTCCEEC-TTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEE
T ss_pred CCCCCChHHHHHHHHHHhCC-CcEEEEE-CCccccC-cCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCCCcEEE
Confidence 2 34568889999988852 3555555 9999987 688999988753 35556666765542 33466788775
Q ss_pred ecccc----ceeeccCCceeChHHHHHHHHhhh-hCC-cccccHHHHHHhCCC-CEEEEecCCceecCCCHHHHHHHHHH
Q 022657 214 TLDRK----TLWEMQTPQVIKPDLLKKGFELVN-REG-LEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 214 ~~~~~----~l~~~~tP~~f~~~~l~~~~~~~~-~~g-~~~td~~~~l~~~g~-~v~~v~~~~~~idVdTpeDL~~ae~~ 286 (294)
+.++. ..+....++.|+.+.+..+.+... ..| ++++|....+...|. .+..+.....|+|||||+||..|+.+
T Consensus 160 ~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~ 239 (295)
T 1lvw_A 160 IEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSF 239 (295)
T ss_dssp EEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHH
Confidence 54321 124556778898876544333211 123 566776555555442 23333223369999999999999988
Q ss_pred Hhh
Q 022657 287 LNL 289 (294)
Q Consensus 287 l~~ 289 (294)
++.
T Consensus 240 ~~~ 242 (295)
T 1lvw_A 240 IET 242 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 28
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.90 E-value=3.5e-23 Score=186.85 Aligned_cols=218 Identities=11% Similarity=0.165 Sum_probs=149.7
Q ss_pred CceeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh----------
Q 022657 66 KSVSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---------- 132 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---------- 132 (294)
|.+.|||||||.||||+. .+||+|++++|+|||+|+++.+.++ ++++|+|++++.. +.+.+++..
T Consensus 1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~ 78 (281)
T 3juk_A 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEA-GCEVMAIVTGRNK-RSLEDYFDTSYEIEHQIQG 78 (281)
T ss_dssp CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHH-TCCEEEEEECTTH-HHHHHHTSCCC--------
T ss_pred CceEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhC-CCCEEEEEecCCH-HHHHHHHhcchhhhhhhhc
Confidence 456899999999999975 7899999999999999999999987 6999999999875 555555432
Q ss_pred --------------cCCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHH----HHHHHHHHHHhcCcE
Q 022657 133 --------------INVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK----DVQKVLMDALRVGAA 192 (294)
Q Consensus 133 --------------~~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~----~i~~ll~~~~~~~~~ 192 (294)
++.++.++.+ ..+..++++.|+..+. .+.++++.+|. +++.+ .++++++.+.+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~ 155 (281)
T 3juk_A 79 TNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCS 155 (281)
T ss_dssp CCHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSC
T ss_pred ccchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCC
Confidence 2344555532 3456899999999886 25677888998 77777 899999988765544
Q ss_pred EEE-EEc--cc----ceEEeCC--CC--cEEEeccccc------eeeccCCceeChHHHHHHHHhhh---hCCcccccHH
Q 022657 193 VLG-VPA--KA----TIKEANS--ES--FVVRTLDRKT------LWEMQTPQVIKPDLLKKGFELVN---REGLEVTDDV 252 (294)
Q Consensus 193 i~~-~~~--~~----~~~~~~~--~G--~v~~~~~~~~------l~~~~tP~~f~~~~l~~~~~~~~---~~g~~~td~~ 252 (294)
+++ .++ .+ .+...++ +| +|..+.++.. .+....-++|+.+.+ +.+.... ...+++++..
T Consensus 156 ~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l-~~l~~~~~~~~~e~~l~d~i 234 (281)
T 3juk_A 156 IVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIF-EILSETKPGKNNEIQITDAL 234 (281)
T ss_dssp EEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHHTCCCCGGGSCCHHHHH
T ss_pred EEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHH-HHHHhcCCCCCCceeHHHHH
Confidence 333 333 22 1233443 56 7776654321 111112346666544 3343321 1225566655
Q ss_pred HHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhh
Q 022657 253 SIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 253 ~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~ 290 (294)
..+...+ ++..+..+..|+|||||+||..|+..+...
T Consensus 235 ~~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 235 RTQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp HHHHHHS-CCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 5444445 777777778899999999999999877654
No 29
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.90 E-value=2.4e-22 Score=174.61 Aligned_cols=183 Identities=20% Similarity=0.292 Sum_probs=124.8
Q ss_pred eeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe-CCCCcH
Q 022657 68 VSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKER 146 (294)
Q Consensus 68 i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v-~~~~~~ 146 (294)
+.+||||||+|+||| .||+|++++|+|||+|+++++... +|+||+++. +.++.....++..+... ..+.++
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~--~~~~~~~~~~~~~~v~d~~~~~G~ 72 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDE--KQAEKLSSRYEAEFIWDLHKGVGS 72 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSH--HHHHHHHTTSCSCEECCTTCCCSH
T ss_pred CEEEEECCCchhhCC--CCCcccEECCeeHHHHHHHHhcCC----CEEEEECCH--HHHHHHHHhcCCeEEecCCCCCCh
Confidence 368999999999999 489999999999999999999853 899999753 44554444355433221 245578
Q ss_pred HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceeeccCC
Q 022657 147 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTP 226 (294)
Q Consensus 147 ~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~~~tP 226 (294)
..|++.|+..+ .+++ ++++|+||++++.++++++.+...+..++ ++. +. .+ +|
T Consensus 73 ~~si~~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v-~~~-~g------~~---------------~P 125 (208)
T 3ngw_A 73 IAGIHAALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPK-HD------YP---------------EP 125 (208)
T ss_dssp HHHHHHHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEE-EEE-SS------SB---------------CT
T ss_pred HHHHHHHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEE-EEc-CC------Ce---------------eE
Confidence 99999999988 4788 99999999999999999998864333222 222 11 11 34
Q ss_pred c--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEecC---------CceecCCCHHHHHHHHHHHhhh
Q 022657 227 Q--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGS---------YTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 227 ~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~~~---------~~~idVdTpeDL~~ae~~l~~~ 290 (294)
. .|+...+....+.....+.. ...++...+ +..++.+ ..++|||||+||+.+++++.++
T Consensus 126 l~al~~~~~~~~l~~~l~~G~~~---~~~~l~~~~--~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~~~~~~~ 195 (208)
T 3ngw_A 126 LLAYYAESAADELERAILQGIRK---ILVPLERLN--VVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKM 195 (208)
T ss_dssp TEEEECGGGHHHHHHHHHTTCCC---THHHHHTSC--EEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHHHHHHHC
T ss_pred EEEEEcHHHHHHHHHHHHcCCCC---HHHHHHhCC--EEEecHHHhcccCcccceEEecCCHHHHHHHHHHhccc
Confidence 3 36665444333322122222 134555544 4444322 3479999999999999988754
No 30
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=99.90 E-value=1.7e-22 Score=184.91 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=152.9
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeee--CCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc---CCceEEe
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPL--LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFS 140 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l--~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v 140 (294)
|++.+||||||.||||+. ||+|+++ +|+|||+|+++.+..+ ++++|+||+++...+.+.+++... +.++.++
T Consensus 4 m~~~~vIlAaG~g~R~~~--~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (303)
T 3pnn_A 4 MKPTLFVLAAGMGSRYGS--LKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTKYEGRIPVELV 80 (303)
T ss_dssp CCCEEEEECTTCBCTTSS--BCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEE
T ss_pred CceEEEEECCCCcccCCC--CceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEE
Confidence 568999999999999997 7999999 5999999999999886 799999999987435566555432 3455555
Q ss_pred CC-----------------CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh---cC--cEEEEEEc
Q 022657 141 LP-----------------GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR---VG--AAVLGVPA 198 (294)
Q Consensus 141 ~~-----------------~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~---~~--~~i~~~~~ 198 (294)
.+ ..+..++++.|...++ +.++++.+|. +++.+.++++++.+.+ .+ ..+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~---~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 156 (303)
T 3pnn_A 81 FQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR---EPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRV 156 (303)
T ss_dssp ECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC---SCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEG
T ss_pred ecccccccccccccccccccCCcHHHHHHHHHhcC---CCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEEC
Confidence 32 2456888999988884 3356667997 6788889999998764 22 34555555
Q ss_pred ccc----------eEEeCCCCcEEEeccccce-----------------------eeccCCceeChHHHHHHHHh-----
Q 022657 199 KAT----------IKEANSESFVVRTLDRKTL-----------------------WEMQTPQVIKPDLLKKGFEL----- 240 (294)
Q Consensus 199 ~~~----------~~~~~~~G~v~~~~~~~~l-----------------------~~~~tP~~f~~~~l~~~~~~----- 240 (294)
.++ +...+++|+|..+.++... +....-++|+.+.+. .+..
T Consensus 157 ~~~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~-~l~~~~~~~ 235 (303)
T 3pnn_A 157 GNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFD-YSEELFINF 235 (303)
T ss_dssp GGSCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHH-HHHHHHHHH
T ss_pred CCccCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHH-HHHHHHHHH
Confidence 433 3345667888766554211 111122456655432 2221
Q ss_pred ---h--hhC-CcccccHHHHHHhCCC-CEEEEecCCceecCCCHHHHHHHHHHHhhhhc
Q 022657 241 ---V--NRE-GLEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNLSSE 292 (294)
Q Consensus 241 ---~--~~~-g~~~td~~~~l~~~g~-~v~~v~~~~~~idVdTpeDL~~ae~~l~~~~~ 292 (294)
. ... .++++|....+...|. ++..++.+..|+|||||+||..|++.++...+
T Consensus 236 l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~~ 294 (303)
T 3pnn_A 236 LNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELTE 294 (303)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHHH
T ss_pred HHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHHH
Confidence 1 112 2567776666666675 88888888889999999999999999987643
No 31
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.90 E-value=8.6e-23 Score=176.13 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=122.2
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CC
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PG 143 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~ 143 (294)
+|++.+||||||+|+|||. .||+|++++|+|||+|+++++.. .+++|+||++++. +.+ ..++..+.... .+
T Consensus 4 mm~~~~iILAgG~s~Rmg~-~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~----~~~~~~~v~~~~~~ 75 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMGG-VDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY----QASGLKVIEDSLAD 75 (201)
T ss_dssp CCSEEEEEECCCCCSSSCS-SCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH----HTTSCCEECCCTTC
T ss_pred CCcceEEEEcCCCCCcCCC-CCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH----hhcCCeEEecCCCC
Confidence 4679999999999999983 58999999999999999999984 5899999998864 222 23443332111 22
Q ss_pred -CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccceEEeCCCCcEEEeccccceee
Q 022657 144 -KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWE 222 (294)
Q Consensus 144 -~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~~~~~~~~G~v~~~~~~~~l~~ 222 (294)
.++..+++.|++.+. .++++++++|+||++++.++.+++. ..++.++ ++. .++..
T Consensus 76 ~~G~~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~-~~~--------~~~~~----------- 131 (201)
T 1e5k_A 76 YPGPLAGMLSVMQQEA--GEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVV-WVH--------DGERD----------- 131 (201)
T ss_dssp CCSHHHHHHHHHHHCC--SSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEE-EEE--------CSSCE-----------
T ss_pred CCCHHHHHHHHHHhCC--CCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEE-EEe--------cCCcc-----------
Confidence 578999999999885 5788999999999999999999986 2333222 221 11111
Q ss_pred ccCCc--eeChHHHHHHHHhhhhCCcccccHHHHHHhCCCCEEEEe-cCCceecCCCHHHHHHHHHH
Q 022657 223 MQTPQ--VIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 223 ~~tP~--~f~~~~l~~~~~~~~~~g~~~td~~~~l~~~g~~v~~v~-~~~~~idVdTpeDL~~ae~~ 286 (294)
.|. .|+.+.+....+........ ...++...+.....++ ....++||||||||+.+++.
T Consensus 132 --~Pl~~~~~~~~~~~l~~~l~~g~~~---~~~~l~~~~~~~v~~~~~~~~~~didTpeDl~~~~~~ 193 (201)
T 1e5k_A 132 --HPTIALVNRAIEPLLLEYLQAGERR---VMVFMRLAGGHAVDFSDHKDAFVNVNTPEELARWQEK 193 (201)
T ss_dssp --EEEEEEEETTHHHHHHHHHHTTCCC---HHHHHHHTTCEEEECTTSTTTTCCCCSHHHHHTTC--
T ss_pred --ccEEEEEcHHHHHHHHHHHHcCCcc---HHHHHHHCCcEEEecCCCCCccccCCCHHHHHHHHHh
Confidence 232 55554443332222112121 2345555543333332 23468999999999877643
No 32
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.89 E-value=1.3e-22 Score=177.96 Aligned_cols=202 Identities=16% Similarity=0.087 Sum_probs=132.2
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC---
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--- 141 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~--- 141 (294)
+|++.+||||||.||||+. |+|++++|+|||+|+++++.+++.+++|+|+++. +.+.+.+..++.++....
T Consensus 1 ~~~~~aiIlA~G~s~R~~~---K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~---~~i~~~~~~~g~~~~~~~~~~ 74 (229)
T 1qwj_A 1 PPHLAALVLARGGSKGIPL---KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH---DEIENVAKQFGAQVHRRSSET 74 (229)
T ss_dssp CCCEEEEEECCSCCSSSSC---TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC---HHHHHHHHHTTCEEEECCGGG
T ss_pred CCcEEEEEEcCCCCCCCCC---cccceECCEEHHHHHHHHHHhCCCcCEEEEECCh---HHHHHHHHHcCCEEEeChhhh
Confidence 4678999999999999984 9999999999999999999987557999999964 345556666665542211
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccceEEeCCCCc--EEE--
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKEANSESF--VVR-- 213 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~~~~~~~~G~--v~~-- 213 (294)
+..+..+++..|+..+. +.+.++++++|+||+++++++++++.+...++ ++.+.+..++.+....+|. +.+
T Consensus 75 ~~~~~~~~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 153 (229)
T 1qwj_A 75 SKDSSTSLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPL 153 (229)
T ss_dssp SSTTCCHHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBS
T ss_pred cCCCCcHHHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhcccccccccccc
Confidence 23345688999999884 35788999999999999999999998866543 3333333333322101121 100
Q ss_pred ecc------cc---ceee-ccCCceeChHHHHHHHHhhhhCCcccccHHHHHH--hCCCCEEEEecC-CceecCCCHHHH
Q 022657 214 TLD------RK---TLWE-MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGS-YTNIKVTTPDDL 280 (294)
Q Consensus 214 ~~~------~~---~l~~-~~tP~~f~~~~l~~~~~~~~~~g~~~td~~~~l~--~~g~~v~~v~~~-~~~idVdTpeDL 280 (294)
... +. ..+. ....++|+.+.+ +. ..|..+..+..+ ..|+|||||+||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--------------------~~~~~~g~~~~~~~~~~~~~~dIdt~~Dl 213 (229)
T 1qwj_A 154 NLNPAKRPRRQDWDGELYENGSFYFAKRHLI--------------------EMGYLQGGKMAYYEMRAEHSVDIDVDIDW 213 (229)
T ss_dssp SSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--------------------HTTCSSCSSEEEEECCGGGCCCHHHHCSH
T ss_pred ccccccccCCCCCCceEEEeeEEEEEEHHHh--------------------ccccccCCeEEEEECCcccccCCCCHHHH
Confidence 000 00 0000 111222332221 11 124455542434 679999999999
Q ss_pred HHHHHHHhhhhcC
Q 022657 281 LIAERILNLSSES 293 (294)
Q Consensus 281 ~~ae~~l~~~~~~ 293 (294)
+.++++++....+
T Consensus 214 ~~a~~~~~~~~~~ 226 (229)
T 1qwj_A 214 PIAEQRVLRFGYF 226 (229)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999876544
No 33
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=4e-24 Score=182.71 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=90.9
Q ss_pred eEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCC--ceEEe-CCCC
Q 022657 69 SVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV--DLKFS-LPGK 144 (294)
Q Consensus 69 ~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~--~i~~v-~~~~ 144 (294)
.+||||||.|+||+. .||+|++++|+|||+|+++++.+++ +++|+|||+++. +.+.+++.. ++. .+.++ ..+.
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNT-PKTKEYINSAYKDYKNIVVIDTSGK 78 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTC-HHHHHHHHHHTTTTTEEEE------
T ss_pred EEEEECCCCCCcCCC-CCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHHhhccCCCCEEEEECCCC
Confidence 689999999999986 6899999999999999999999874 999999999875 455555554 321 34443 3455
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh-------cCcEEEEEEcc
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR-------VGAAVLGVPAK 199 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~-------~~~~i~~~~~~ 199 (294)
++.++++.|+..+ .+.++++++|+||++++.++++++.+.. .++.++++|..
T Consensus 79 g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~ 137 (196)
T 3rsb_A 79 GYIEDLNECIGYF---SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKE 137 (196)
T ss_dssp --CCCCCTTTTTC---SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETT
T ss_pred CcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEcc
Confidence 5677788888877 4678889999999999999999999875 24455566653
No 34
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=1.1e-21 Score=181.01 Aligned_cols=218 Identities=15% Similarity=0.165 Sum_probs=145.1
Q ss_pred ceeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-----------
Q 022657 67 SVSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------- 132 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----------- 132 (294)
.+.+||||||.||||+. .+||+|++++|+|||+|+++++..+ ++++|+||+++.. +.+.+++..
T Consensus 12 ~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~-~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 12 VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNK-AGVLAHFERSSELEETLMER 89 (323)
T ss_dssp CCEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTC-HHHHHTTSCCHHHHHHHHHT
T ss_pred ceEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcH-HHHHHHHhccchhhhhhhcc
Confidence 46799999999999974 5799999999999999999999986 7999999999864 444443321
Q ss_pred -------------cCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCC-HHHHHHHHHHHHhcCcEEE-E
Q 022657 133 -------------INVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGAAVL-G 195 (294)
Q Consensus 133 -------------~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~-~~~i~~ll~~~~~~~~~i~-~ 195 (294)
.+.++.++. ...+...+++.|+..+.++.+.++++.+|+|+ + +..++++++.+.+.++..+ +
T Consensus 90 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~ 168 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCA 168 (323)
T ss_dssp TCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEE
T ss_pred chhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEE
Confidence 233454443 23467889999998875433457888999998 6 6899999998876665433 3
Q ss_pred EEcc--c----ceEEeC----CCC--cEEEecccc------ceeeccCCceeChHHHHHHHHhhhh---CCcccccHHHH
Q 022657 196 VPAK--A----TIKEAN----SES--FVVRTLDRK------TLWEMQTPQVIKPDLLKKGFELVNR---EGLEVTDDVSI 254 (294)
Q Consensus 196 ~~~~--~----~~~~~~----~~G--~v~~~~~~~------~l~~~~tP~~f~~~~l~~~~~~~~~---~g~~~td~~~~ 254 (294)
.++. + .+...+ ++| .|..+.++. ..+....-++|+.+.+ ..+..... ..+++++....
T Consensus 169 ~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~-~~l~~~~~~~~ge~~l~d~i~~ 247 (323)
T 2pa4_A 169 VEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIF-DALRRITPGAGGELQLTDAIDL 247 (323)
T ss_dssp EECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHH-HHHHHCCCCGGGCCCHHHHHHH
T ss_pred EEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccccccEEEEEEEEECHHHH-HHHHhhCCCCCCeEeHHHHHHH
Confidence 3431 1 122223 343 666655432 1111122245666543 33332211 12445555444
Q ss_pred HHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 255 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 255 l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
+...|.++..+..+..|+|||||+||..++..+.
T Consensus 248 l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~ 281 (323)
T 2pa4_A 248 LIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFG 281 (323)
T ss_dssp HHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHh
Confidence 5555778888888778999999999999985543
No 35
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.88 E-value=6.3e-21 Score=185.66 Aligned_cols=228 Identities=16% Similarity=0.191 Sum_probs=167.6
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHh----hcCCce
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE----KINVDL 137 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~----~~~~~i 137 (294)
|..+..+.+||||||+||||+..+||+|+||+|+|||+|+++.+.++ ++++|+||+++.. +.++++++ .++.++
T Consensus 7 m~~~~~~~vvILAaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~i 84 (501)
T 3st8_A 7 MTFPGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDH-QRIAPLVGELADTLGRTI 84 (501)
T ss_dssp -----CEEEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTH-HHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCceEEEECCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCH-HHHHHHHHHHHHhcCCcE
Confidence 66677899999999999999988899999999999999999999987 7999999999985 55665553 356677
Q ss_pred EEeCCC--CcHHHHHHHHHHhcccC-CCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcccc----eEEeCCC
Q 022657 138 KFSLPG--KERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSE 208 (294)
Q Consensus 138 ~~v~~~--~~~~~sv~~al~~~~~~-~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~~~----~~~~~~~ 208 (294)
.++.+. .+.+++++.|+..+.++ .+.++++.+|.|+++.+.+.++++.++..++ .++..++.++ ....+++
T Consensus 85 ~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~ 164 (501)
T 3st8_A 85 DVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD 164 (501)
T ss_dssp EEEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccc
Confidence 777543 35689999999999743 3567888899999999999999998876543 4555665543 3344778
Q ss_pred CcEEEeccccce-------eec-cCCceeChHHHHHHHHhhhh----CCcccccHHHHHHhCCCCEEEEecCCc--eecC
Q 022657 209 SFVVRTLDRKTL-------WEM-QTPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYT--NIKV 274 (294)
Q Consensus 209 G~v~~~~~~~~l-------~~~-~tP~~f~~~~l~~~~~~~~~----~g~~~td~~~~l~~~g~~v~~v~~~~~--~idV 274 (294)
|.+.+++++... ..+ ..-++|..+.+...+..... ..++++|...++...|..+..+..+.. ...+
T Consensus 165 g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~ 244 (501)
T 3st8_A 165 HEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGV 244 (501)
T ss_dssp CCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCC
T ss_pred eeEEeeccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhccc
Confidence 888888765211 111 12356777777776654332 236788888888888888877765543 4578
Q ss_pred CCHHHHHHHHHHHhhhh
Q 022657 275 TTPDDLLIAERILNLSS 291 (294)
Q Consensus 275 dTpeDL~~ae~~l~~~~ 291 (294)
++..++..++..++.+.
T Consensus 245 n~~~~l~~~~~~~~~r~ 261 (501)
T 3st8_A 245 NNRVQLAELASELNRRV 261 (501)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhhh
Confidence 99999988887776553
No 36
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.88 E-value=5.3e-22 Score=181.20 Aligned_cols=217 Identities=16% Similarity=0.234 Sum_probs=147.5
Q ss_pred eeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh---cCCceEEeC
Q 022657 68 VSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~---~~~~i~~v~ 141 (294)
+.+||||||.||||+ ..+||+|++++|+|||+|+++.+..+ ++++|+||+++...+.+++++.. ++.++.++.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~ 82 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAE 82 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEE
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhC-CCCcEEEEechhHHHHHHHHHhcccccCceEEEec
Confidence 469999999999997 45799999999999999999999986 69999999875444667776653 455555543
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh--cCcEEEEEEcccce----EEeCCCCcEEE
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVR 213 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~--~~~~i~~~~~~~~~----~~~~~~G~v~~ 213 (294)
...+..+++..|+..+.+ .+++++. +|+||.. ..+.++++.+.. .++.+++.++.++. ...+++|++..
T Consensus 83 ~~~~~G~~~al~~a~~~i~~-~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~g~v~~ 159 (296)
T 1mc3_A 83 QPSPDGLAQAFIIGETFLNG-EPSCLVL-GDNIFFG-QGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAIS 159 (296)
T ss_dssp CSSCCCSTHHHHHTHHHHTT-SCEEEEE-TTEEEEC-SSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhCC-CCEEEEE-CCccccc-cCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCCCcEEE
Confidence 233557889999888862 3555554 9999987 678888888743 35566666665542 23455677776
Q ss_pred ecccc----ceeeccCCceeChHHHHHHHHhhh-hCC-cccccHHHHHHhCCCCEEEEec-CC-ceecCCCHHHHHHHHH
Q 022657 214 TLDRK----TLWEMQTPQVIKPDLLKKGFELVN-REG-LEVTDDVSIVEHLKHPVYITEG-SY-TNIKVTTPDDLLIAER 285 (294)
Q Consensus 214 ~~~~~----~l~~~~tP~~f~~~~l~~~~~~~~-~~g-~~~td~~~~l~~~g~~v~~v~~-~~-~~idVdTpeDL~~ae~ 285 (294)
+.++. ..+....++.|+.+.+..+..... ..| ++++|....+...| ++.+... .. .|+|||||+||..|+.
T Consensus 160 ~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~ 238 (296)
T 1mc3_A 160 LEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEAST 238 (296)
T ss_dssp CCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHH
Confidence 54421 123344567788765543322111 123 56666555544444 3444333 34 5999999999999998
Q ss_pred HHhh
Q 022657 286 ILNL 289 (294)
Q Consensus 286 ~l~~ 289 (294)
+++.
T Consensus 239 ~~~~ 242 (296)
T 1mc3_A 239 FVQT 242 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 37
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=99.88 E-value=1e-21 Score=178.80 Aligned_cols=221 Identities=12% Similarity=0.159 Sum_probs=137.5
Q ss_pred ccccCCceeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-----
Q 022657 61 VVVKDKSVSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----- 132 (294)
Q Consensus 61 ~m~~~~~i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----- 132 (294)
.|...+.+.|||||||.||||+. .+||+|++++|+|||+|+++++.++ ++++|+||+++.. +.+.+++..
T Consensus 8 ~~~~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~-~~i~~~~~~~~~l~ 85 (297)
T 2ux8_A 8 SMTIKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGK-SALEDHFDIAYELE 85 (297)
T ss_dssp --CCCCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTC-HHHHHHTSCCHHHH
T ss_pred cccccCccEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCH-HHHHHHHhhhhhhh
Confidence 35555778999999999999973 5799999999999999999999986 7999999999864 455555432
Q ss_pred ------------------cCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCC--HHHHHHHHHHHHhcC
Q 022657 133 ------------------INVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL--SKDVQKVLMDALRVG 190 (294)
Q Consensus 133 ------------------~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~--~~~i~~ll~~~~~~~ 190 (294)
.+.++.++. ...+...+++.|+..+. .+.++++.+|.|+ + +..++++++.+.+.+
T Consensus 86 ~~l~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~ 162 (297)
T 2ux8_A 86 ATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVG 162 (297)
T ss_dssp HHHHTTTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHC
T ss_pred hhhhhccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcC
Confidence 233455543 33467889999988875 3567788999994 5 589999999887655
Q ss_pred cEEEEE-Ec--ccc--eEEe--C--CCC--cEEEeccccc------eeeccCCceeChHHHHHHHHhhhh---CCccccc
Q 022657 191 AAVLGV-PA--KAT--IKEA--N--SES--FVVRTLDRKT------LWEMQTPQVIKPDLLKKGFELVNR---EGLEVTD 250 (294)
Q Consensus 191 ~~i~~~-~~--~~~--~~~~--~--~~G--~v~~~~~~~~------l~~~~tP~~f~~~~l~~~~~~~~~---~g~~~td 250 (294)
+..+++ +. .+. +..+ + ++| .|..+.++.. .+....-++|+.+.+ +.++.... ..+++++
T Consensus 163 ~~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d 241 (297)
T 2ux8_A 163 GNLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVM-RILENQGKGAGGEIQLTD 241 (297)
T ss_dssp SEEEEEC-----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHH-HHHHHTC--------CCT
T ss_pred CCEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhhCCCCCCeeEHHH
Confidence 433332 22 111 2112 2 134 4544433211 111112245666543 33332211 1244454
Q ss_pred HHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHh
Q 022657 251 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 288 (294)
Q Consensus 251 ~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~ 288 (294)
....+...+ ++..+..+..|+|||||+||..++..+.
T Consensus 242 ~i~~l~~~~-~v~~~~~~~~w~dIgt~~dl~~a~~~~~ 278 (297)
T 2ux8_A 242 AMQRMIGDQ-PFHGVTFQGTRYDCGDKAGFIQANLAVA 278 (297)
T ss_dssp TGGGGTTTS-CEEEEECSSEEEETTSHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CEEEEEecceEEeCCCHHHHHHHHHHHH
Confidence 433332333 7888887778999999999999985554
No 38
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=99.86 E-value=2.3e-20 Score=165.73 Aligned_cols=214 Identities=13% Similarity=0.112 Sum_probs=133.7
Q ss_pred CceeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC---CceEE
Q 022657 66 KSVSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKF 139 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~---~~i~~ 139 (294)
|++.|||||||.||||+. ++||+|++++|+|||+|+++++.++ ++++|+||+++.. +.+++++..+. ..+.+
T Consensus 1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~ 78 (259)
T 1tzf_A 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKG-YVIKEYFANYFLHMSDVTF 78 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTH-HHHHHHHHTHHHHHSCEEE
T ss_pred CCcEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHC-CCCEEEEEcccCH-HHHHHHHhhcccccccccc
Confidence 456899999999999984 5799999999999999999999987 6999999999875 55666654321 11221
Q ss_pred ---------e------------C--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEE
Q 022657 140 ---------S------------L--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV 196 (294)
Q Consensus 140 ---------v------------~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~ 196 (294)
. . ...+..++++.|+..+.. .+.++++.+|. + ....+.++++.+...++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~-~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 79 HMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD-DEAFLFTYGDG-V-ADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp EGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT-SSCEEEEETTE-E-ECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC-CCcEEEEECCE-e-cccCHHHHHHHHHHhCCeEEEE
Confidence 1 1 124568889999888742 35566778887 3 4567899998876655433333
Q ss_pred Eccc----ceEEeCCCCcEEEeccccc---eeeccCCceeChHHHHHHHHhhhhCCccc-ccHHHHHHhCCCCEEEEecC
Q 022657 197 PAKA----TIKEANSESFVVRTLDRKT---LWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEGS 268 (294)
Q Consensus 197 ~~~~----~~~~~~~~G~v~~~~~~~~---l~~~~tP~~f~~~~l~~~~~~~~~~g~~~-td~~~~l~~~g~~v~~v~~~ 268 (294)
.... .....+ +|+|..+.++.. .......++|+.+.+. .+ ......+ ++....+...+ ++..+..+
T Consensus 156 ~~~~~~~~g~v~~~-~g~v~~~~ekp~~~~~~~~~Giy~~~~~~l~-~l---~~~~~~~~~~~i~~~~~~~-~v~~~~~~ 229 (259)
T 1tzf_A 156 ATFPPGRFGALDIQ-AGQVRSFQEKPKGDGAMINGGFFVLNPSVID-LI---DNDATTWEQEPLMTLAQQG-ELMAFEHP 229 (259)
T ss_dssp EECCCCCSEEEEEE-TTEEEEEEESCSCCSCCEECCCEEECGGGGG-GC---CSTTCCTTTHHHHHHHHTT-CEEEEEEC
T ss_pred EecCCCCccEEEEc-CCEEEEEEecCCCCCceEEEEEEEeCHHHHH-hh---cccccccHHHHHHHHHHcC-CEEEEEeC
Confidence 3221 122334 677776654321 1111233456655431 11 1111112 33323333334 67777777
Q ss_pred CceecCCCHHHHHHHHHHHhhh
Q 022657 269 YTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 269 ~~~idVdTpeDL~~ae~~l~~~ 290 (294)
..|.|||||+||..+++.+...
T Consensus 230 ~~~~dI~t~~d~~~a~~~~~~~ 251 (259)
T 1tzf_A 230 GFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp SCEEECCSHHHHHHHHHHHHTT
T ss_pred cEEEeCCCHHHHHHHHHHHhcC
Confidence 7899999999999999988753
No 39
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=99.85 E-value=2e-20 Score=170.46 Aligned_cols=213 Identities=15% Similarity=0.168 Sum_probs=140.4
Q ss_pred ceeEEEEeCCCCCCCCC---CCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-----------
Q 022657 67 SVSVILLAGGRGKRMGA---NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------- 132 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~---~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~----------- 132 (294)
.+.+||||||.||||+. .+||+|++++|+|||+|+++++..+ ++++|+||+++.. +.+.+++..
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~ 85 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSK-NSIENHFDTSFELEAMLEKR 85 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGG-HHHHHHHSCCHHHHHHHC--
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCH-HHHHHHHhcchhhhhhhhhc
Confidence 36799999999999973 5799999999999999999999986 6999999999864 445555432
Q ss_pred --------------cCCceEEeC--CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCC----HH---HHHHHHHHHHhc
Q 022657 133 --------------INVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL----SK---DVQKVLMDALRV 189 (294)
Q Consensus 133 --------------~~~~i~~v~--~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~----~~---~i~~ll~~~~~~ 189 (294)
.+.++.++. ...+..++++.|+..+. .+.++++.+|+|+ + +. +++++++.+.+.
T Consensus 86 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~ 162 (302)
T 2e3d_A 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDET 162 (302)
T ss_dssp --CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHH
T ss_pred cchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhc
Confidence 133455543 34467899999998885 2567788999997 5 45 899999988665
Q ss_pred CcEEEE-EEcccc----eEEeC----CCC---cEEEeccccc------eeeccCCceeChHHHHHHHHhhhh---CCccc
Q 022657 190 GAAVLG-VPAKAT----IKEAN----SES---FVVRTLDRKT------LWEMQTPQVIKPDLLKKGFELVNR---EGLEV 248 (294)
Q Consensus 190 ~~~i~~-~~~~~~----~~~~~----~~G---~v~~~~~~~~------l~~~~tP~~f~~~~l~~~~~~~~~---~g~~~ 248 (294)
++.+++ .+..+. +...+ ++| .|..+.++.. .+....-++|+.+.+ +.+..... ..+++
T Consensus 163 ~~~~i~~~~~~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l 241 (302)
T 2e3d_A 163 GHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQL 241 (302)
T ss_dssp CCEEEEEEECSCGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHTCCCC----CCCH
T ss_pred CCcEEEEEEccCCCCccEEEecccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHH-HHHHhhCCCCCCceeh
Confidence 554333 333221 22221 345 5554443211 111112245666533 33332111 12444
Q ss_pred ccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHH
Q 022657 249 TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 286 (294)
Q Consensus 249 td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~ 286 (294)
++....+...+ ++..+..+..|+|||||+||..++..
T Consensus 242 ~d~i~~l~~~~-~v~~~~~~~~~~DIgt~~d~~~a~~~ 278 (302)
T 2e3d_A 242 TDAIDMLIEKE-TVEAYHMKGKSHDCGNKLGYMQAFVE 278 (302)
T ss_dssp HHHHHHHHHHS-CEEEEECCSCEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CEEEEEeCCeEEcCCCHHHHHHHHHH
Confidence 55444444445 78888887789999999999999833
No 40
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.85 E-value=7.3e-21 Score=169.73 Aligned_cols=211 Identities=18% Similarity=0.162 Sum_probs=134.1
Q ss_pred CceeEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC
Q 022657 66 KSVSVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP 142 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~ 142 (294)
|++.+||||||.||||+ .++||+|++++|+|||+|+++++..+ ++++|+||+++.. +.+++..+.++..+.....
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~-~~i~~~~~~~~~~iv~~~~ 101 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLK-EQFDYLKEKYGVRLVFNDK 101 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTG-GGGTHHHHHHCCEEEECTT
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHC-CCCeEEEEeCCcH-HHHHHHHHhCCcEEEECCC
Confidence 67889999999999997 45799999999999999999999986 6999999999764 3445454555543322221
Q ss_pred --CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEccc---ceE-EeCCCCcEEEecc
Q 022657 143 --GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA---TIK-EANSESFVVRTLD 216 (294)
Q Consensus 143 --~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~---~~~-~~~~~G~v~~~~~ 216 (294)
..+...+++.|+..++ + ++++.+|.|+.. +.++++++ .+ .++++...+ .+. ..+++|+|..+.+
T Consensus 102 ~~~~g~~~al~~a~~~~~---~-~lv~~~D~~~~~-~~~~~~~~----~~-~~~t~~~~~~~~~~~v~~d~~g~v~~~~e 171 (254)
T 1jyk_A 102 YADYNNFYSLYLVKEELA---N-SYVIDADNYLFK-NMFRNDLT----RS-TYFSVYREDCTNEWFLVYGDDYKVQDIIV 171 (254)
T ss_dssp TTTSCTHHHHHTTGGGCT---T-EEEEETTEEESS-CCCCSCCC----SE-EEEECEESSCSSCCEEEECTTCBEEEEEC
T ss_pred ccCCCcHHHHHHHHHHCC---C-EEEEeCCcccCH-HHHHHHHh----CC-ceEEEEcccCCCCeEEEECCCCeEEEEEE
Confidence 2345788888887764 3 567889999987 55544432 22 222322211 122 2466788887765
Q ss_pred cccee-eccCCceeChH---HHHHHHHhhhhCC----cccccHHHHHHhCCCCEEEEecC-CceecCCCHHHHHHHHHHH
Q 022657 217 RKTLW-EMQTPQVIKPD---LLKKGFELVNREG----LEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 217 ~~~l~-~~~tP~~f~~~---~l~~~~~~~~~~g----~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeDL~~ae~~l 287 (294)
+.... ....-+.|+.+ .+.+.++...+.+ ++.+|....+ ..+.++..+..+ ..|++||||+||+.+++++
T Consensus 172 ~~~~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l-~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l 250 (254)
T 1jyk_A 172 DSKAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDN-IKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 250 (254)
T ss_dssp CCSSEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTT-GGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHH-HhhCCeEEEEecCCeEEEcCCHHHHHHHHHHh
Confidence 43211 11122456543 2333343322221 2333321111 235677777666 6799999999999999998
Q ss_pred hh
Q 022657 288 NL 289 (294)
Q Consensus 288 ~~ 289 (294)
++
T Consensus 251 ~~ 252 (254)
T 1jyk_A 251 KN 252 (254)
T ss_dssp C-
T ss_pred hh
Confidence 75
No 41
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=99.85 E-value=1.5e-20 Score=168.01 Aligned_cols=216 Identities=11% Similarity=0.080 Sum_probs=142.5
Q ss_pred EEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCch--HHHHHHHhhcCC-c--eEEeC
Q 022657 70 VILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINV-D--LKFSL 141 (294)
Q Consensus 70 aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~--~~~~~~~~~~~~-~--i~~v~ 141 (294)
+||||||.||||+ .++||+|+|++|+|||+|+++++....++++|+||+++... +.+.+.+.+++. . +.+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELH 81 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEES
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeC
Confidence 6999999999995 46899999999999999999999883379999999998742 234444455542 2 22222
Q ss_pred -CCCcHHHHHHHHHHhcc----cCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccc---eEEeCCCC--cE
Q 022657 142 -PGKERQDSVYSGLQEVD----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IKEANSES--FV 211 (294)
Q Consensus 142 -~~~~~~~sv~~al~~~~----~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~---~~~~~~~G--~v 211 (294)
...+.+++++.|+..+. +..+.++++.+|. +++...+.++ ....++.+++.+..++ +...+++| +|
T Consensus 82 ~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~---~~~~~~~i~~~~~~~p~yG~v~~d~~g~~~V 157 (255)
T 4evw_A 82 TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNFVFPDI---SQHSDGYLEVFQGGGDNWSFAKPEHAGSTKV 157 (255)
T ss_dssp SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTCCCCGG---GGSSSEEEEEEECCSSCSCEEEESSTTCCBE
T ss_pred CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecchhHHH---hhcCCcEEEEEecCCCceeEEEECCCCCeEE
Confidence 23456899999999882 1234577888997 5544334332 1223445566655443 33446667 88
Q ss_pred EEeccccce--eeccCCceeChH-HHHHHHHh----hh----hCCcccccHHHHHHhCCCCEEEEecC-CceecCCCHHH
Q 022657 212 VRTLDRKTL--WEMQTPQVIKPD-LLKKGFEL----VN----REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDD 279 (294)
Q Consensus 212 ~~~~~~~~l--~~~~tP~~f~~~-~l~~~~~~----~~----~~g~~~td~~~~l~~~g~~v~~v~~~-~~~idVdTpeD 279 (294)
.++.++... ......+.|+.. .+.+++.. .. ...++++|....+...|.++..+..+ ..|+||+||+|
T Consensus 158 ~~i~EK~~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~ 237 (255)
T 4evw_A 158 IQTAEKNPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDE 237 (255)
T ss_dssp EEEESSSCSSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHH
T ss_pred EEEEeccCccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHH
Confidence 888776321 111223566653 33333322 11 22377888877777888888887765 78999999999
Q ss_pred HHHHHHHHhh
Q 022657 280 LLIAERILNL 289 (294)
Q Consensus 280 L~~ae~~l~~ 289 (294)
|+.+++.-++
T Consensus 238 l~~~~~~~~~ 247 (255)
T 4evw_A 238 YTDFLRQPQP 247 (255)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhcCCc
Confidence 9999876654
No 42
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.85 E-value=4.6e-21 Score=165.08 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=86.3
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-CCC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGK 144 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-~~~ 144 (294)
+++.+||||||+|+|||. ||+|++++|+|||+|+++++.+. +++|+||+++... +.+. +..+.... .+.
T Consensus 13 ~~~~~iILA~G~g~Rmg~--~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~--~~~~v~~~~~~~ 82 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFGE--DKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFL--NAPVVLDEFEES 82 (201)
T ss_dssp SCCEEEEEEESSCCCCST--THHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGG--TCCEEECCCSSC
T ss_pred cCceEEEECCCCCccCCC--CcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcC--CceEEecCCCCC
Confidence 457899999999999994 89999999999999999999874 8999999998752 1111 33332211 345
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHH-HH
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQK-VL 183 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~-ll 183 (294)
++.++++.|++.+. .+.++++.+|+|+++++.++. ++
T Consensus 83 g~~~~i~~al~~~~--~~~~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 83 ASIIGLYTALKHAK--EENVFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp CHHHHHHHHHHHCS--SSEEEEEETTCTTCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHcC--CCCEEEEeCCcCcCCHHHHHHHHh
Confidence 78999999999885 478889999999999999999 88
No 43
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=99.84 E-value=9.1e-20 Score=167.01 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=123.8
Q ss_pred CceeEEEEeCCCCCCCC--C--CCCceeeee-CCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCC-ceE
Q 022657 66 KSVSVILLAGGRGKRMG--A--NMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-DLK 138 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg--~--~~pK~Ll~l-~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~-~i~ 138 (294)
|++.+||||||.||||+ . ..||+|+++ +|+|||+|+++++.++ +++|+|++++...+.+.+++.. ++. ++.
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~ 80 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVG 80 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEE
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccE
Confidence 55789999999999995 2 479999999 6999999999999975 8999999998644556666665 554 444
Q ss_pred Ee--CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHH---HHhcCcE--EEEEEccc----ceEEeCC
Q 022657 139 FS--LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD---ALRVGAA--VLGVPAKA----TIKEANS 207 (294)
Q Consensus 139 ~v--~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~---~~~~~~~--i~~~~~~~----~~~~~~~ 207 (294)
++ ....+...++..++..+. ..+.++++.+|.|+++.+.++++++. +.+.++. +.+.+..+ .+...++
T Consensus 81 ~i~~~~~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d~ 159 (308)
T 2qh5_A 81 FLLESLSKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPN 159 (308)
T ss_dssp EEEESSCCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECSS
T ss_pred EEeCCCCCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEECC
Confidence 44 234467888999998884 23568888999998888889999986 3344442 22333322 1223344
Q ss_pred CCcEEEecccc------------ceeeccCCceeChHHHHHHHHhhh--------h----C--C----cccc----cHHH
Q 022657 208 ESFVVRTLDRK------------TLWEMQTPQVIKPDLLKKGFELVN--------R----E--G----LEVT----DDVS 253 (294)
Q Consensus 208 ~G~v~~~~~~~------------~l~~~~tP~~f~~~~l~~~~~~~~--------~----~--g----~~~t----d~~~ 253 (294)
+|.|..+.++. ..+....-++|+.+.+.+.++... . . . .+++ +...
T Consensus 160 ~~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 239 (308)
T 2qh5_A 160 GLDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQ 239 (308)
T ss_dssp SSBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHH
T ss_pred CCEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHh
Confidence 56766554432 111112234566655433332111 0 0 0 2222 1111
Q ss_pred ---------HHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 254 ---------IVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 254 ---------~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
.+.+.+.++..++.+..|.||+||+||..+++.-
T Consensus 240 ~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 240 DLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp TSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred hCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 1223367888888888999999999999887643
No 44
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.84 E-value=9.8e-21 Score=166.46 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=123.5
Q ss_pred CceeEEEEeCCC---CCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCC
Q 022657 66 KSVSVILLAGGR---GKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP 142 (294)
Q Consensus 66 ~~i~aIILAaG~---gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~ 142 (294)
|++.+||||||. |+||+. .||+|++++|+|||+|+++++..+ ++ +|+||+..+ .+++++ + +.+ ..
T Consensus 1 m~~~~vIlAaG~tRl~~r~~~-~~K~l~~i~g~pll~~~l~~l~~~-~~-~ivvv~~~~---~i~~~~---~--~~~-~~ 68 (232)
T 2dpw_A 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAA-GL-SPVYVGENP---GLVPAP---A--LTL-PD 68 (232)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHT-TC-EEEEESCCS---SCSSCC---S--EEE-CC
T ss_pred CceeEEEECCCCCccccccCC-CCceeeEECCEEHHHHHHHHHHhc-CC-EEEEEeChH---HHhhhc---C--eEe-cC
Confidence 457899999999 888874 599999999999999999999986 46 898876642 122221 2 444 55
Q ss_pred CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcC--cEEEEEEcccc-eEEeCCCCcEEEeccccc
Q 022657 143 GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT-IKEANSESFVVRTLDRKT 219 (294)
Q Consensus 143 ~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~--~~i~~~~~~~~-~~~~~~~G~v~~~~~~~~ 219 (294)
+.++.+++..|+..++ +.++++++|+||++++.++++++ + ..+ .++.+.+..+. .....-.+.+.+..++.
T Consensus 69 ~~g~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ek~- 142 (232)
T 2dpw_A 69 RGGLLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRTKRTYARLREGT- 142 (232)
T ss_dssp CSSHHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTCCCCCEEETTEE-
T ss_pred CCCHHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCcceeEEEEecCc-
Confidence 6678999999999875 67888999999999999999998 5 333 23333332111 00000012233333321
Q ss_pred eeeccCCceeChHHHHHHHHhh-------------------------hhCCcccccHH-HHHHhCCCCEEEEecC--Cce
Q 022657 220 LWEMQTPQVIKPDLLKKGFELV-------------------------NREGLEVTDDV-SIVEHLKHPVYITEGS--YTN 271 (294)
Q Consensus 220 l~~~~tP~~f~~~~l~~~~~~~-------------------------~~~g~~~td~~-~~l~~~g~~v~~v~~~--~~~ 271 (294)
+.....+.|+.+.+....+.. ....+.+++.. .+....|.++..+..+ ..|
T Consensus 143 -~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~ 221 (232)
T 2dpw_A 143 -FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVG 221 (232)
T ss_dssp -EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGT
T ss_pred -eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhc
Confidence 111223344433222111100 01224555543 3334457788887764 458
Q ss_pred ecCCCHHHHH
Q 022657 272 IKVTTPDDLL 281 (294)
Q Consensus 272 idVdTpeDL~ 281 (294)
+|||||+||+
T Consensus 222 ~dIdtpeDl~ 231 (232)
T 2dpw_A 222 VDVDREEDLV 231 (232)
T ss_dssp CCCCSHHHHC
T ss_pred cCCCChhhcc
Confidence 9999999985
No 45
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.83 E-value=2.3e-20 Score=176.14 Aligned_cols=206 Identities=17% Similarity=0.278 Sum_probs=135.4
Q ss_pred eEEEEeCCCCCCCC---CCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC--
Q 022657 69 SVILLAGGRGKRMG---ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-- 143 (294)
Q Consensus 69 ~aIILAaG~gsRmg---~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~-- 143 (294)
.+||||||.|+||+ ...||+|++++|+|||+|+++++.++ ++++|+|++++. +++++......+.++.+.
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~-~~~~i~vv~~~~----i~~~~~~~~~~i~~~~~~~~ 76 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKC-GIRDITVIVSSK----NKEYFEKKLKEISIVTQKDD 76 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGG----GHHHHHHHCTTCEEEECCTT
T ss_pred eEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHC-CCCEEEEEeCHH----HHHHhhccCCcEEEEeCCCC
Confidence 58999999999996 34699999999999999999999987 599999999976 233333332234544322
Q ss_pred -CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEEEcccc----eEEeCCCCcEEEecccc
Q 022657 144 -KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRTLDRK 218 (294)
Q Consensus 144 -~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~~~~~~----~~~~~~~G~v~~~~~~~ 218 (294)
.+...+++.++. .+.++++.+|+|+.+++.++++++ ..++.+++.+..++ ....+++|++..+.++.
T Consensus 77 ~~g~~~~l~~~~~-----~~~~lv~~~D~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~v~~~~~g~v~~~~ek~ 148 (401)
T 2ggo_A 77 IKGTGAAILSAKF-----NDEALIIYGDLFFSNEKEICNIIT---LKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKP 148 (401)
T ss_dssp CCBSTTTGGGCCC-----SSEEEEEETTEEESCSHHHHHHTT---CSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSC
T ss_pred CCChHHHHHHhcc-----CCCEEEEeCccccccHHHHHHHHH---hcCCEEEEEEcCCCcceeEEEECCCCeEEEEEECC
Confidence 233444443332 366778889999998999999887 23455556655432 22345567777665431
Q ss_pred -----ceeeccCCceeChHHHHHHHHhhh---hCCcccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhh
Q 022657 219 -----TLWEMQTPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 219 -----~l~~~~tP~~f~~~~l~~~~~~~~---~~g~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~ 290 (294)
.++. ..-+.|+.+.+. .++... ...+.+++....+ ..+.++..++.+..|+|||||+||+.+++++..+
T Consensus 149 ~~~~~~~~~-~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~ 225 (401)
T 2ggo_A 149 EIPPSNLIN-AGIYKLNSDIFT-YLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN 225 (401)
T ss_dssp SSCSCSEEE-EEEEEEETHHHH-HHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEE-EEEEEEcHHHHH-HhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence 1111 111245555443 233221 1224556554445 4466788888777899999999999999988654
No 46
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.82 E-value=3.4e-20 Score=162.54 Aligned_cols=203 Identities=18% Similarity=0.234 Sum_probs=110.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEeCCC--
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-- 143 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~~~-- 143 (294)
+++.+||||||.||||+.. ||+|++++|+|||+|+++++.+. +++|+||+ +...+..+.....++.++.++.++
T Consensus 17 ~~~~~iIlA~G~g~R~~~~-~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (232)
T 2xme_A 17 KLMKAVILAAGLGTRLGGV-PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRYADDIDAFLKDKGFNYKIVRHDRP 92 (232)
T ss_dssp CCEEEEEEECC------CC-CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STTHHHHHHHHTTSCCCEEEEECSCG
T ss_pred ccceEEEECCcCcCcCCCC-CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CChHHHHHHHHHhcCCcEEEEECCCC
Confidence 3588999999999999863 89999999999999999999875 89999999 554333333344455456665422
Q ss_pred -CcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcEEEEE-----Ecccce-EEeCCCCcEEEecc
Q 022657 144 -KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV-----PAKATI-KEANSESFVVRTLD 216 (294)
Q Consensus 144 -~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~i~~~-----~~~~~~-~~~~~~G~v~~~~~ 216 (294)
.++.++++.|+..++ .+ ++++.+|+|+ +++.++++++. .+ .++.. +..+.. ...+ +|.+..+.+
T Consensus 93 ~~g~~~~i~~a~~~~~--~~-~lv~~~D~p~-~~~~~~~l~~~---~~-~~~~~~~~~~~~~~~~~v~~~-~g~v~~~~~ 163 (232)
T 2xme_A 93 EKGNGYSLLVAKNHVE--DR-FILTMGDHVY-SQQFIEKAVRG---EG-VIADREPRFVDIGEATKIRVE-DGRVAKIGK 163 (232)
T ss_dssp GGCHHHHHHTTGGGCC--SS-EEEEETTEEE-CHHHHHHHTTC---CE-EEEESSCSSSCTTTSCEEEEE-TTEEEEEET
T ss_pred CCCcHHHHHHHHHHCC--CC-EEEEcCCccc-CHHHHHHHHhC---CC-cEEEccccccCCCcceEEEEc-CCEEEEeec
Confidence 356899999998875 23 5567899997 89888888763 12 11110 111221 1223 566654433
Q ss_pred cc---ceeeccCCceeChHHHHHHHHhhhhCC-cccccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHH
Q 022657 217 RK---TLWEMQTPQVIKPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 287 (294)
Q Consensus 217 ~~---~l~~~~tP~~f~~~~l~~~~~~~~~~g-~~~td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l 287 (294)
+. .... .....|+.+.+. .+......| ..++ .+++..+.....+. +..|+|||||+||+.+++++
T Consensus 164 ~~~~~~~~~-~g~~~~~~~~~~-~l~~~~~~g~~~l~---~ll~~~~v~~~~~~-~~~~~dI~tpeDl~~a~~~l 232 (232)
T 2xme_A 164 DLREFDCVD-TGFFVLDDSIFE-HAEKLRDREEIPLS---EIVKLARLPVTYVD-GELWMDVDTKEDVRRANRAL 232 (232)
T ss_dssp TCSSCSEEE-EEEEEECTTHHH-HHGGGTTSSCCCHH---HHHHHHTCBEEECC-SCCEEEEECC----------
T ss_pred CCCCcceEE-EEEEEECHHHHH-HHHHHHhcChhHHH---HHHHcCCEEEEEEC-CCCEEeCCCHHHHHHHHhhC
Confidence 21 1100 011245544333 333222222 3332 34544443333332 35699999999999988754
No 47
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.82 E-value=1.7e-19 Score=171.59 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=142.0
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cCC------
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV------ 135 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~~------ 135 (294)
++.|||||||.|+||+ ..+||+|++++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++.. ++.
T Consensus 12 ~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~ 89 (420)
T 3brk_X 12 DAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNS-GIRRIGVATQYKA-HSLIRHLQRGWDFFRPERN 89 (420)
T ss_dssp GEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHT-TCCEEEEEECTTC-HHHHHHHHHHSCCCCGGGT
T ss_pred ceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhC-CCCeEEEEeCCCh-HHHHHHHhhhhcccccccc
Confidence 4789999999999997 5679999999999 9999999999986 6999999999875 455555544 432
Q ss_pred -ceEEeCC------C---CcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEc--cc
Q 022657 136 -DLKFSLP------G---KERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KA 200 (294)
Q Consensus 136 -~i~~v~~------~---~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~--~~ 200 (294)
.+.++.. . .+..++++.|+..+.. +.+.++++.+|. +. ...++++++.+.+.++ .+.+.+. .+
T Consensus 90 ~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~ 167 (420)
T 3brk_X 90 ESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSGADVTIGCLEVPRME 167 (420)
T ss_dssp CEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTTCSEEEEEEEEETTG
T ss_pred CCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcCCeEEEEEeecCccc
Confidence 2444321 2 4678999999888752 246788888998 43 4568899988766543 3444433 12
Q ss_pred ----ceEEeCCCCcEEEeccccc-----------eeeccCCceeChHHHHHHHHhhhh---CCccc-ccHHHHHHhCCCC
Q 022657 201 ----TIKEANSESFVVRTLDRKT-----------LWEMQTPQVIKPDLLKKGFELVNR---EGLEV-TDDVSIVEHLKHP 261 (294)
Q Consensus 201 ----~~~~~~~~G~v~~~~~~~~-----------l~~~~tP~~f~~~~l~~~~~~~~~---~g~~~-td~~~~l~~~g~~ 261 (294)
.+...+++|++..+.++.. .+....-++|+.+.+.+.++.... ....+ +|....+...+ +
T Consensus 168 ~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g-~ 246 (420)
T 3brk_X 168 ATGFGVMHVNEKDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHG-K 246 (420)
T ss_dssp GGGSEEEEECTTSBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHS-C
T ss_pred cCcccEEEECCCCcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhC-c
Confidence 1233466788876654321 111122346776665554432211 11112 23222233334 7
Q ss_pred EEEEec-----------CCceecCCCHHHHHHHHHHHhh
Q 022657 262 VYITEG-----------SYTNIKVTTPDDLLIAERILNL 289 (294)
Q Consensus 262 v~~v~~-----------~~~~idVdTpeDL~~ae~~l~~ 289 (294)
+..+.. +..|+|||||+||..++..+..
T Consensus 247 v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~ 285 (420)
T 3brk_X 247 AVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTD 285 (420)
T ss_dssp EEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTS
T ss_pred EEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhC
Confidence 776666 6689999999999999987754
No 48
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.80 E-value=1.9e-18 Score=165.70 Aligned_cols=220 Identities=14% Similarity=0.068 Sum_probs=140.1
Q ss_pred ceeEEEEeCCCCCCCC---CCCCceeeeeCCe-ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhh-cC--C----
Q 022657 67 SVSVILLAGGRGKRMG---ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN--V---- 135 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg---~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~-~~--~---- 135 (294)
++.+||||||.||||+ ..+||+|++++|+ |||+|+++.+.++ ++++|+|++++.. +.+.+++.+ ++ .
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~ 97 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 97 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCC-HHHHHHHHHHCC-------
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCH-HHHHHHHhhhhhccccccc
Confidence 4789999999999997 4579999999999 9999999999986 7999999999875 444444432 21 1
Q ss_pred ---ceEEe--CC-------CCcHHHHHHHHHHhccc-CCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc--EEEEEEcc-
Q 022657 136 ---DLKFS--LP-------GKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK- 199 (294)
Q Consensus 136 ---~i~~v--~~-------~~~~~~sv~~al~~~~~-~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~--~i~~~~~~- 199 (294)
.+.++ .+ ..+..++++.|+..+.. ..+.++++.+|+ +. ...++++++.+.+.++ .+++.+..
T Consensus 98 ~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~ 175 (451)
T 1yp2_A 98 NEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDH-LY-RMDYEKFIQAHRETDADITVAALPMDE 175 (451)
T ss_dssp -CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCE-EC-CCCHHHHHHHHHHTTCSEEEEEEEECH
T ss_pred ccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EE-cCCHHHHHHHHHHcCCcEEEEEEEcCh
Confidence 12332 11 24678999999988753 246788889998 44 4568999988766554 23334432
Q ss_pred -----cceEEeCCCCcEEEeccccc-------------------------eeeccCCceeChHHHHHHHHhhhhCCccc-
Q 022657 200 -----ATIKEANSESFVVRTLDRKT-------------------------LWEMQTPQVIKPDLLKKGFELVNREGLEV- 248 (294)
Q Consensus 200 -----~~~~~~~~~G~v~~~~~~~~-------------------------l~~~~tP~~f~~~~l~~~~~~~~~~g~~~- 248 (294)
..+...+++|+|..+.++.. .+....-++|+.+.+.+.++........+
T Consensus 176 ~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 255 (451)
T 1yp2_A 176 KRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFG 255 (451)
T ss_dssp HHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTT
T ss_pred hhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchH
Confidence 12344566788877654321 11112234677766655554321111122
Q ss_pred ccHHHHHHhCCCCEEEEecCCceecCCCHHHHHHHHHHHhhh
Q 022657 249 TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 290 (294)
Q Consensus 249 td~~~~l~~~g~~v~~v~~~~~~idVdTpeDL~~ae~~l~~~ 290 (294)
.+....+...|.++..+..+..|.||+||+||..+++.+..+
T Consensus 256 ~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~ 297 (451)
T 1yp2_A 256 SEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 297 (451)
T ss_dssp TTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred hhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcc
Confidence 222223334467888888888899999999999999877654
No 49
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.77 E-value=6.5e-18 Score=156.74 Aligned_cols=215 Identities=15% Similarity=0.228 Sum_probs=134.6
Q ss_pred eeEEEEeCCCCCCCC----CCCCceeeeeCC-eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcC-CceEEeC
Q 022657 68 VSVILLAGGRGKRMG----ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSL 141 (294)
Q Consensus 68 i~aIILAaG~gsRmg----~~~pK~Ll~l~G-kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~-~~i~~v~ 141 (294)
+.+||||||.||||+ ..+||+|++++| +|||+|+++++....++++|+|+|++...+.+.+++...+ ..+....
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~ 81 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEP 81 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEES
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCC
Confidence 468999999999996 457999999998 9999999999998657999999999875455666555432 1343333
Q ss_pred CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHH----HHhcCcEE-EEE-Eccc----ceEEeCCC---
Q 022657 142 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD----ALRVGAAV-LGV-PAKA----TIKEANSE--- 208 (294)
Q Consensus 142 ~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~----~~~~~~~i-~~~-~~~~----~~~~~~~~--- 208 (294)
...+...++..|...+. ..+.++++.+|+|+..++.+..+++. +.+.++.+ +++ |... .+...+++
T Consensus 82 ~~~gta~ai~~a~~~~~-~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~ 160 (336)
T 2x65_A 82 MKKNTAPACFIGTKLAD-DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEE 160 (336)
T ss_dssp SCCCHHHHHHHHHTTSC-TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEET
T ss_pred CCCCcHHHHHHHHHhhC-CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCC
Confidence 44567888888877653 24678888999999998887766664 33334432 222 3221 12222222
Q ss_pred --CcEEEeccccc------------eeeccCCceeChHHHHHHHHhhhhC------CcccccH---HHHHH---------
Q 022657 209 --SFVVRTLDRKT------------LWEMQTPQVIKPDLLKKGFELVNRE------GLEVTDD---VSIVE--------- 256 (294)
Q Consensus 209 --G~v~~~~~~~~------------l~~~~tP~~f~~~~l~~~~~~~~~~------g~~~td~---~~~l~--------- 256 (294)
+.|..+.++.. ++....-++|+.+.+.+.++..... ...-..+ ...+.
T Consensus 161 ~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy 240 (336)
T 2x65_A 161 GVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDY 240 (336)
T ss_dssp TEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHH
T ss_pred CccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHH
Confidence 45666554321 1111223456665554333221100 0000000 11222
Q ss_pred ---hCCCCEEEEecCCceecCCCHHHHHHH
Q 022657 257 ---HLKHPVYITEGSYTNIKVTTPDDLLIA 283 (294)
Q Consensus 257 ---~~g~~v~~v~~~~~~idVdTpeDL~~a 283 (294)
+.+.++..++.+..|.||+||+||..+
T Consensus 241 ~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 241 AVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 235678888888899999999999887
No 50
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.76 E-value=3.2e-18 Score=158.86 Aligned_cols=215 Identities=15% Similarity=0.174 Sum_probs=132.2
Q ss_pred CceeEEEEeCCCCCCCC----CCCCceeeeeCC-eehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe
Q 022657 66 KSVSVILLAGGRGKRMG----ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 140 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg----~~~pK~Ll~l~G-kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v 140 (294)
|++.+||||||.||||. ..+||+|++++| +|||+|+++++....++++|+|||++...+.+.+++.. ..+ +.
T Consensus 1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--~~~-i~ 77 (337)
T 2cu2_A 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--IRL-LL 77 (337)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--SEE-EE
T ss_pred CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--Cce-Ee
Confidence 45789999999999995 357999999998 99999999999886568999999998643333333222 122 33
Q ss_pred C-CCCcHHHHHHHHHHhcc--cCCCeEEEecCCCCCCCHHHHHHHHHHHHh---cCcEE-EEE-Eccc----ceEEeCCC
Q 022657 141 L-PGKERQDSVYSGLQEVD--FNSELVCIHDSARPLVLSKDVQKVLMDALR---VGAAV-LGV-PAKA----TIKEANSE 208 (294)
Q Consensus 141 ~-~~~~~~~sv~~al~~~~--~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~---~~~~i-~~~-~~~~----~~~~~~~~ 208 (294)
. ...+...++..+.. +. ...+.++++.+|+|+..++.+..+++.+.+ .++.+ +++ |... .+...+++
T Consensus 78 e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~~~~ 156 (337)
T 2cu2_A 78 EPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPR 156 (337)
T ss_dssp ESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEE
T ss_pred cCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEECCc
Confidence 2 33455667776665 42 124678889999999999888887775421 24332 222 3321 12222322
Q ss_pred ----CcEEEeccccc-----------eeeccCCceeChHHHHHHHHhhhhC----------CcccccHHH---------H
Q 022657 209 ----SFVVRTLDRKT-----------LWEMQTPQVIKPDLLKKGFELVNRE----------GLEVTDDVS---------I 254 (294)
Q Consensus 209 ----G~v~~~~~~~~-----------l~~~~tP~~f~~~~l~~~~~~~~~~----------g~~~td~~~---------~ 254 (294)
+.|..+.++.. ++....-++|+.+.+.+.++..... +-...+... .
T Consensus 157 ~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~ 236 (337)
T 2cu2_A 157 EGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYG 236 (337)
T ss_dssp ETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHH
T ss_pred ccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHH
Confidence 55666655421 1111223567766554443322110 000001111 0
Q ss_pred HHhCCCCEEEEecCCceecCCCHHHHHHHH
Q 022657 255 VEHLKHPVYITEGSYTNIKVTTPDDLLIAE 284 (294)
Q Consensus 255 l~~~g~~v~~v~~~~~~idVdTpeDL~~ae 284 (294)
+.+.+.++..++.+..|.||+||++|..+.
T Consensus 237 vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 237 VMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp TGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 122356888888888999999999998874
No 51
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=99.24 E-value=9e-11 Score=101.20 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=78.1
Q ss_pred eeEEEEe--CCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCCCeE-EEEcCCCchHHHHHHHhhcCCceEEeCCCC
Q 022657 68 VSVILLA--GGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLPGK 144 (294)
Q Consensus 68 i~aIILA--aG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i~~I-vVv~~~~~~~~~~~~~~~~~~~i~~v~~~~ 144 (294)
+.+||+| |...||+.....+......|+||++|+++++... +++.+ +|++++.... +. ++ +.++.+..
T Consensus 4 ~~~vip~k~g~~KtRL~~~l~~~~~~~l~~~ll~~vl~~l~~~-~~~~v~vvv~~~~~~~---~~---~~--~~~v~~~~ 74 (211)
T 2i5e_A 4 MRAVIPYKKAGAKSRLSPVLSLQEREEFVELMLNQVISSLKGA-GIEQVDILSPSVYGLE---EM---TE--ARVLLDEK 74 (211)
T ss_dssp CEEEEECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTTCS---SC---CS--SEEEECCS
T ss_pred eEEEEEeCCCCCccccCccCCHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEEcCcHHHH---hh---cC--CEEEECCC
Confidence 5689999 6777887643334444466799999999999886 58899 8888875321 11 23 34443336
Q ss_pred cHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHH
Q 022657 145 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM 184 (294)
Q Consensus 145 ~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~ 184 (294)
+..+++..|++.+ .+.++++.+|+|++++++++++++
T Consensus 75 gl~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 75 DLNEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp CHHHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred CHHHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 6788999999876 357888899999999999999987
No 52
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.4e-09 Score=102.51 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=86.4
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHhccC---CCC-eEEEEcCCCchHHHHHHHhhc---CC
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLL-GQPIALYSFYTFSRMV---EVK-EIVVVCDPSYSDIFEETKEKI---NV 135 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~-GkpLl~~~i~~l~~~~---~i~-~IvVv~~~~~~~~~~~~~~~~---~~ 135 (294)
...++.+||||||+|||||.+.||.|+++. |+|||+|++++++... ++. .++|+++....+.++++++++ +.
T Consensus 89 ~~~k~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~ 168 (488)
T 2i5k_A 89 NLSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRI 168 (488)
T ss_dssp TGGGEEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSC
T ss_pred hcCCceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCc
Confidence 446788999999999999998999999998 9999999999987652 222 366767744456677777654 33
Q ss_pred ceEEeCCC------------------------C--cHHHHHH--HH---HHhc-ccCCCeEEEecCCCCCCCHHHHHHHH
Q 022657 136 DLKFSLPG------------------------K--ERQDSVY--SG---LQEV-DFNSELVCIHDSARPLVLSKDVQKVL 183 (294)
Q Consensus 136 ~i~~v~~~------------------------~--~~~~sv~--~a---l~~~-~~~~~~vlv~~~D~Pli~~~~i~~ll 183 (294)
++.++.++ . +.++.+. .+ +..+ ....+++++..+|. ++...++. ++
T Consensus 169 ~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L 246 (488)
T 2i5k_A 169 RIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-IL 246 (488)
T ss_dssp EEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HH
T ss_pred eEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HH
Confidence 45544222 1 1122222 22 4444 22257889999998 87666665 44
Q ss_pred HHHHhcCc--EEEEEEc
Q 022657 184 MDALRVGA--AVLGVPA 198 (294)
Q Consensus 184 ~~~~~~~~--~i~~~~~ 198 (294)
..+...++ .+.+++.
T Consensus 247 ~~~~~~~a~~t~~v~~~ 263 (488)
T 2i5k_A 247 NHMIETGAEYIMELTDK 263 (488)
T ss_dssp HHHHHSCCSEEEEEEEC
T ss_pred HHHHhcCCcEEEEEEEe
Confidence 55444443 3444444
No 53
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=98.80 E-value=2.6e-08 Score=95.84 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=57.0
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHhccC---C--CCeEEEEcCCCchHHHHHHHhh---cCCc
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLL-GQPIALYSFYTFSRMV---E--VKEIVVVCDPSYSDIFEETKEK---INVD 136 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~-GkpLl~~~i~~l~~~~---~--i~~IvVv~~~~~~~~~~~~~~~---~~~~ 136 (294)
.++.+||||||.|||||.+.||+|+++. |+|+|++.++++++.. + +. ++|.+.+...+.+++++++ ++.+
T Consensus 78 ~k~~vviLAGGlGTRLg~~~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ip-~vimts~~t~e~t~~~f~~~~~fG~~ 156 (469)
T 2icy_A 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVP-LVLMNSFNTHDDTHKIVEKYTNSNVD 156 (469)
T ss_dssp TTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCC-EEEEECTTTHHHHHHHHGGGTTSSSC
T ss_pred ccceEEEEcCCccccCCCCCCccccccCCCCCHHHHHHHHHHHHHHhcCCCcc-EEEEeCCCCHHHHHHHHHhcccCCce
Confidence 5689999999999999988999999998 9999999999998752 3 44 5555555434667777754 3556
Q ss_pred eEEe
Q 022657 137 LKFS 140 (294)
Q Consensus 137 i~~v 140 (294)
+.+.
T Consensus 157 I~~f 160 (469)
T 2icy_A 157 IHTF 160 (469)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 54
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=98.73 E-value=6.3e-08 Score=93.96 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=51.6
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeee---CCeehHHHHHHHHhc--------cC---CCCeEEEEcCCCchHHHHHHH
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPL---LGQPIALYSFYTFSR--------MV---EVKEIVVVCDPSYSDIFEETK 130 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l---~GkpLl~~~i~~l~~--------~~---~i~~IvVv~~~~~~~~~~~~~ 130 (294)
..++.+||||||.|||||.+.||+|+++ .|+|+|++.++.+++ .+ .+..+++++++. .+.+.+++
T Consensus 100 ~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t-~e~t~~~f 178 (505)
T 1jv1_A 100 QNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT-MESTKEFF 178 (505)
T ss_dssp TTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT-HHHHHHHH
T ss_pred cCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC-HHHHHHHH
Confidence 4679999999999999998889999999 799999999999765 11 256555555544 35556665
Q ss_pred hh
Q 022657 131 EK 132 (294)
Q Consensus 131 ~~ 132 (294)
++
T Consensus 179 ~~ 180 (505)
T 1jv1_A 179 TK 180 (505)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 55
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=98.53 E-value=1.8e-06 Score=76.12 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=68.2
Q ss_pred eehHHHHHHHHhccCCCCeEEEEcCCCchHHH--HHHHhhcCCceEEe-CCCCcHHHHHHHHHHhc-ccCCCeEEEecCC
Q 022657 95 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFS-LPGKERQDSVYSGLQEV-DFNSELVCIHDSA 170 (294)
Q Consensus 95 kpLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~--~~~~~~~~~~i~~v-~~~~~~~~sv~~al~~~-~~~~~~vlv~~~D 170 (294)
++|+.++++.+.+. +.+.++++++......+ .... +..+.+. +.+.+..+++.+|+..+ ....+.++++.+|
T Consensus 37 ~~ll~~tl~~~~~~-~~~~vvvvt~~~~~~~~~~~~~~---~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD 112 (242)
T 3cgx_A 37 RHFVQDMLQGLARL-HADLHICYVPGDADLPEKFKAWL---GPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSD 112 (242)
T ss_dssp HHHHHHHHHHHTTS-SSEEEEEECCCCTTHHHHHHHHH---CTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEcCCchhhhhhhhhhc---cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 78999999999886 56777777766543322 3332 2223333 45567899999999876 3335678888899
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEEEEc
Q 022657 171 RPLVLSKDVQKVLMDALRVGAAVLGVPA 198 (294)
Q Consensus 171 ~Pli~~~~i~~ll~~~~~~~~~i~~~~~ 198 (294)
+|+++++.|+++++.+...+ ++..|.
T Consensus 113 ~P~L~~~~l~~a~~~l~~~d--~VigPa 138 (242)
T 3cgx_A 113 IPDYPCELVQKALNDLQHYD--AAIGPA 138 (242)
T ss_dssp CTTCCHHHHHHHHHHTTTCS--EEEEEB
T ss_pred CCCCCHHHHHHHHHHhccCC--eEEEEc
Confidence 99999999999998765544 333454
No 56
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=98.44 E-value=2.2e-06 Score=80.63 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=53.0
Q ss_pred ccCCceeEEEEeCCCCCCCCCCCCceeeee---CCeehHHHHHHHHhc------------cCCCCeEEEEcCCCchHHHH
Q 022657 63 VKDKSVSVILLAGGRGKRMGANMPKQYLPL---LGQPIALYSFYTFSR------------MVEVKEIVVVCDPSYSDIFE 127 (294)
Q Consensus 63 ~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l---~GkpLl~~~i~~l~~------------~~~i~~IvVv~~~~~~~~~~ 127 (294)
.+..++.+|+||||.|||||.+.||+++++ .|+|++++.++.+++ ...+.-++...++ ..+.+.
T Consensus 31 i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~-t~e~t~ 109 (405)
T 3oc9_A 31 ISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEE-TIEEIN 109 (405)
T ss_dssp HHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTT-THHHHH
T ss_pred HhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCc-cHHHHH
Confidence 355689999999999999999899999999 899999999988853 1246655444444 445666
Q ss_pred HHHhh
Q 022657 128 ETKEK 132 (294)
Q Consensus 128 ~~~~~ 132 (294)
+++++
T Consensus 110 ~~f~~ 114 (405)
T 3oc9_A 110 NYFKE 114 (405)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 57
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=98.43 E-value=9.2e-08 Score=92.57 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=50.9
Q ss_pred ceeEEEEeCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHhccCCCC-----eEEEEcCCCchHHHHHHHh
Q 022657 67 SVSVILLAGGRGKRMGANMPKQYLPLL-GQPIALYSFYTFSRMVEVK-----EIVVVCDPSYSDIFEETKE 131 (294)
Q Consensus 67 ~i~aIILAaG~gsRmg~~~pK~Ll~l~-GkpLl~~~i~~l~~~~~i~-----~IvVv~~~~~~~~~~~~~~ 131 (294)
++.+||||||.|||||.+.||+|++++ |+|+|++.++++.+. +.. .++|.+.....+.+.++++
T Consensus 75 k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~-~~~~g~~ip~viMtS~~t~e~t~~~f~ 144 (505)
T 2oeg_A 75 STVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYL-RQHCSEHLRFMLMDSFNTSASTKSFLK 144 (505)
T ss_dssp TEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHH-HHHTCTTCEEEEEECHHHHHHHHHHHH
T ss_pred cceEEEEcCCcccccCCCCCCcccccCCCCcHHHHHHHHHHHH-HHhcCCCcCEEEEeCCCCHHHHHHHHh
Confidence 789999999999999988999999999 999999999999875 222 4656665443355555554
No 58
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=98.29 E-value=3.8e-07 Score=88.16 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=53.7
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHhccC-------C------CCeEEEEcCCCchHHHH
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLL---GQPIALYSFYTFSRMV-------E------VKEIVVVCDPSYSDIFE 127 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~---GkpLl~~~i~~l~~~~-------~------i~~IvVv~~~~~~~~~~ 127 (294)
+.-++.+||||||.|||||.+.||++++++ |+|+|++.++++.... + +..++.++++. .+.+.
T Consensus 100 ~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t-~~~t~ 178 (486)
T 2yqc_A 100 GNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPT-RNATE 178 (486)
T ss_dssp HTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGG-HHHHH
T ss_pred hhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCC-HHHHH
Confidence 335789999999999999988999999999 9999999999998751 2 66666665554 35556
Q ss_pred HHHhh
Q 022657 128 ETKEK 132 (294)
Q Consensus 128 ~~~~~ 132 (294)
+++++
T Consensus 179 ~~~~~ 183 (486)
T 2yqc_A 179 SFFIE 183 (486)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66643
No 59
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=97.65 E-value=6.5e-05 Score=72.61 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=53.5
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeC-CeehHHHHHHHHhcc----CCCCeEEEEcCCCchHHHHHHHhhc
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLL-GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEKI 133 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~-GkpLl~~~i~~l~~~----~~i~~IvVv~~~~~~~~~~~~~~~~ 133 (294)
-.++.+|+||||.|||||.+.||.++++. |+++++..+++++.. +..=..+|-|.....+...++++++
T Consensus 125 l~kvavvlLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~ 198 (528)
T 3r3i_A 125 LNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY 198 (528)
T ss_dssp CTTEEEEEECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG
T ss_pred cCceEEEEeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc
Confidence 36799999999999999988899999995 999999999998764 1122466777766555556666554
No 60
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=97.51 E-value=6.3e-05 Score=73.97 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=55.7
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeC---CeehHHHHHHHHhccCCCC-eEEEEcCCCchHHHHHHHhhcC
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLL---GQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKIN 134 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~---GkpLl~~~i~~l~~~~~i~-~IvVv~~~~~~~~~~~~~~~~~ 134 (294)
.++.+|+||||.|||||.+.||.+++++ |++++++.++.+++..++. .++|-|.....+...+++++++
T Consensus 113 ~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fg 185 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQ 185 (630)
T ss_dssp GGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTT
T ss_pred hhceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhC
Confidence 3789999999999999987899999996 9999999999988643332 5677777766666677777665
No 61
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=97.31 E-value=0.00041 Score=66.46 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=53.2
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeee-CCeehHHHHHHHHhccC---CC-CeEEEEcCCCchHHHHHHHhh
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPL-LGQPIALYSFYTFSRMV---EV-KEIVVVCDPSYSDIFEETKEK 132 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l-~GkpLl~~~i~~l~~~~---~i-~~IvVv~~~~~~~~~~~~~~~ 132 (294)
.++.+|+||||.|||||.+.||.++++ .|+++++..+++++... ++ =.++|-|.....+...+++++
T Consensus 75 ~kvavvlLaGGlGTRLG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k 146 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRK 146 (484)
T ss_dssp TTEEEEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGG
T ss_pred hhcEEEEEcCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHh
Confidence 479999999999999998889999999 79999999998887531 12 257787887765666666654
No 62
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=95.26 E-value=0.36 Score=40.42 Aligned_cols=109 Identities=18% Similarity=0.069 Sum_probs=68.8
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCC-CCeEEEEcCCCc---hHHHHHHHhhcCCce
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDL 137 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~-i~~IvVv~~~~~---~~~~~~~~~~~~~~i 137 (294)
|...+++++||++-. ....|..+++.+.+... --+|+||-+... .+.+++...++ .++
T Consensus 1 M~~~p~vsViIp~yn-----------------~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~-~~i 62 (240)
T 3bcv_A 1 MSLIPKVSVIVPIYN-----------------VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQY-PNI 62 (240)
T ss_dssp --CCCSEEEEEEESS-----------------CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHC-SSE
T ss_pred CCCCCcEEEEEecCC-----------------CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhC-CCE
Confidence 444567888888743 23457788888765321 126777655332 12333433333 346
Q ss_pred EEeC-CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCc
Q 022657 138 KFSL-PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 191 (294)
Q Consensus 138 ~~v~-~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~ 191 (294)
+++. ...+...+.-.|++.+. .++++++|+|. ++.++.+..+++.+.+.+.
T Consensus 63 ~~i~~~n~G~~~a~N~g~~~a~--g~~i~~lD~Dd-~~~~~~l~~l~~~~~~~~~ 114 (240)
T 3bcv_A 63 KVIHKKNAGLGMACNSGLDVAT--GEYVAFCDSDD-YVDSDMYMTMYNVAQKYTC 114 (240)
T ss_dssp EEEECCCCCHHHHHHHHHHHCC--SSEEEECCTTC-CCCTTHHHHHHHHHHHHTC
T ss_pred EEEECCCCChHHHHHHHHHHcC--CCEEEEECCCC-cCCHHHHHHHHHHHHhcCC
Confidence 6553 34456777888888875 68999999995 5789999999998876443
No 63
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.05 E-value=0.67 Score=41.53 Aligned_cols=106 Identities=16% Similarity=0.050 Sum_probs=69.2
Q ss_pred cCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhcc--CCCCeEEEEcCCCchHHHHHHHhhcCCceE---
Q 022657 64 KDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRM--VEVKEIVVVCDPSYSDIFEETKEKINVDLK--- 138 (294)
Q Consensus 64 ~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~--~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~--- 138 (294)
..+++++||++=. ....|..+++.+.+. +...+|+||-+... |...+.+++++..+.
T Consensus 46 ~~~~vSViIp~yN-----------------~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~ 107 (329)
T 3ckj_A 46 AGRTISVVLPALD-----------------EEDTIGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSRE 107 (329)
T ss_dssp TTCCEEEEEEESS-----------------CTTTHHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHH
T ss_pred cCCcEEEEEeeCC-----------------CHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccce
Confidence 4477888888853 224466777777653 22368888765442 334445555554321
Q ss_pred -Ee---CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 139 -FS---LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 139 -~v---~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
++ ....+...++..|++.+. .++++++|+|.-.+.++.+.++++.+..+
T Consensus 108 ~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~lD~D~~~~~p~~l~~l~~~l~~~ 160 (329)
T 3ckj_A 108 QALPEVPIRPGKGEALWRSLAASR--GDIVVFVDSDLINPHPMFVPWLVGPLLTG 160 (329)
T ss_dssp HHCTTSCCCCSHHHHHHHHHHHCC--CSEEEECCTTEESCCTTHHHHHHHHHHSC
T ss_pred eeeccCCCCCCHHHHHHHHHHhCC--CCEEEEECCCCCCcChHHHHHHHHHHHhC
Confidence 11 234456778888998875 68999999997546889999999986543
No 64
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=92.96 E-value=0.71 Score=42.79 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=68.0
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHH----hccCCCCeEEEEcCCCchHHHHHHHhhcCCceEEe
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTF----SRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 140 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l----~~~~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v 140 (294)
.+++++||++=-.. ..|..+++.+ .+.+...+|+||-+... |...+.+++++..+...
T Consensus 93 ~p~vSVVIP~yNe~-----------------~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~ 154 (387)
T 3f1y_A 93 GLTVSAVLPSRNVA-----------------DTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSE 154 (387)
T ss_dssp TCCEEEEEEESSCT-----------------TTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEG
T ss_pred CCeEEEEEEcCCCH-----------------HHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhccc
Confidence 46788888875432 2344444444 33333568888766543 44445566665433211
Q ss_pred -------CCCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 141 -------LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 141 -------~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
....+...++..|++.+. .++++++|+|.-.+.++.+.++++.+.+.
T Consensus 155 ~~~~i~~~~n~G~g~A~n~G~~~A~--gd~i~~lDaD~~~~~p~~L~~l~~~l~~~ 208 (387)
T 3f1y_A 155 NELMSGYGDAHGKGDAMWRALSVTR--GDLVLYIDADTRDFRPQLAYGVLGPVLEV 208 (387)
T ss_dssp GGTTGGGCSCCSHHHHHHHHTTTCC--SSEEEECCTTCSSCCTHHHHTTHHHHHHS
T ss_pred ceeEecCCccCCHHHHHHHHHHhcC--CCEEEEEcCCCCcCCHHHHHHHHHHHHHC
Confidence 134556888889998875 68999999996546899999999988654
No 65
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=92.69 E-value=0.95 Score=38.19 Aligned_cols=92 Identities=8% Similarity=0.040 Sum_probs=62.0
Q ss_pred CeehHHHHHHHHhccCCC-CeEEEEcCCCchHHHHHHHhhc--CCceEEeCC----------CCcHHHHHHHHHHhcccC
Q 022657 94 GQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI--NVDLKFSLP----------GKERQDSVYSGLQEVDFN 160 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~i-~~IvVv~~~~~~~~~~~~~~~~--~~~i~~v~~----------~~~~~~sv~~al~~~~~~ 160 (294)
....|..+++.+.+...- -+|+||-+... |...+.++.+ ..++.++.. ..+...+...|++.+.
T Consensus 12 ~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~-- 88 (255)
T 1qg8_A 12 KSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE-- 88 (255)
T ss_dssp CTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcC--
Confidence 345788888888653221 26777665443 4445555555 446776643 3345666777888775
Q ss_pred CCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 161 SELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 161 ~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
.++++++|+|.- +.++.+..+++.+.+.
T Consensus 89 g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 89 GEYITYATDDNI-YMPDRLLKMVRELDTH 116 (255)
T ss_dssp CSEEEEEETTEE-ECTTHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCc-cChHHHHHHHHHHHhC
Confidence 789999999954 5889999999998765
No 66
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=90.12 E-value=2.6 Score=39.47 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=70.9
Q ss_pred CceeEEEEeCCCCCCCCCCCCceeeeeCCe-ehHHHHHHHHhccCCC---CeEEEEcCCCc----hHHHHHHHhhcCCce
Q 022657 66 KSVSVILLAGGRGKRMGANMPKQYLPLLGQ-PIALYSFYTFSRMVEV---KEIVVVCDPSY----SDIFEETKEKINVDL 137 (294)
Q Consensus 66 ~~i~aIILAaG~gsRmg~~~pK~Ll~l~Gk-pLl~~~i~~l~~~~~i---~~IvVv~~~~~----~~~~~~~~~~~~~~i 137 (294)
+++++||++-. .. ..|..+++.+.+...- .+|+||-+... .+.+++...+++..+
T Consensus 29 p~vSVIIp~yN-----------------~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v 91 (472)
T 1xhb_A 29 PTTSVVIVFHN-----------------EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPV 91 (472)
T ss_dssp CCEEEEEEESS-----------------CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCE
T ss_pred CCeEEEEEeCC-----------------CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcE
Confidence 56888888743 22 5677777777653211 37888765432 123444444444356
Q ss_pred EEeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE
Q 022657 138 KFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA 192 (294)
Q Consensus 138 ~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~ 192 (294)
+++.. ..+...+...|++.+. .++++++|+|.- ++++.+..+++.+.+....
T Consensus 92 ~vi~~~~n~G~~~a~N~g~~~A~--gd~i~flD~D~~-~~p~~L~~ll~~~~~~~~~ 145 (472)
T 1xhb_A 92 HVIRMEQRSGLIRARLKGAAVSR--GQVITFLDAHCE-CTAGWLEPLLARIKHDRRT 145 (472)
T ss_dssp EEEECSSCCCHHHHHHHHHHHCC--SSEEEEEESSEE-ECTTCHHHHHHHHHHCTTE
T ss_pred EEEECCCCCChHHHHHHHHHhcc--CCeEEEECCCeE-eCccHHHHHHHHHHhCCCE
Confidence 76643 3456777888888876 689999999954 7889999999998765543
No 67
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=87.13 E-value=4.3 Score=39.38 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=58.9
Q ss_pred CeehHHHHHHHHhccCCCC-eEEEEcCCCc---hHHHHHHHhhcCCceEEeC-CCCcHHHHHHHHHHhcccCCCeEEEec
Q 022657 94 GQPIALYSFYTFSRMVEVK-EIVVVCDPSY---SDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCIHD 168 (294)
Q Consensus 94 GkpLl~~~i~~l~~~~~i~-~IvVv~~~~~---~~~~~~~~~~~~~~i~~v~-~~~~~~~sv~~al~~~~~~~~~vlv~~ 168 (294)
+...|..+++.+..-...+ +|+||-+... .+.+++...+. ..+.++. ...+...+...|++.+. .++++++|
T Consensus 386 ~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~-~~i~~~~~~n~G~~~a~n~g~~~a~--g~~i~~ld 462 (625)
T 2z86_A 386 CSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANH-PRVRFISQKNKGIGSASNTAVRLCR--GFYIGQLD 462 (625)
T ss_dssp CTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTC-TTEEEEEECCCCHHHHHHHHHHHCC--SSEEEECC
T ss_pred CHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhC-CcEEEEeCCCCCHHHHHHHHHHhcC--CCEEEEEC
Confidence 3457888888886532222 6777654332 12233332222 3455553 34456777888888875 68999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc
Q 022657 169 SARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 169 ~D~Pli~~~~i~~ll~~~~~~ 189 (294)
+|. .+.++.+..+++.+...
T Consensus 463 ~D~-~~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 463 SDD-FLEPDAVELCLDEFRKD 482 (625)
T ss_dssp TTC-EECTTHHHHHHHHHHHC
T ss_pred CCc-ccChhHHHHHHHHHHhC
Confidence 995 46899999999988654
No 68
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=87.06 E-value=2.9 Score=39.60 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=69.1
Q ss_pred CCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccCCC---CeEEEEcCCCchHHHHHHHhhcCCceEEeC
Q 022657 65 DKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINVDLKFSL 141 (294)
Q Consensus 65 ~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~~i---~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~ 141 (294)
.+++++||++-... ...|..+|+.+.....- -+|+||-+....+.+...+.++ ..++++.
T Consensus 65 ~p~vSVIIp~yN~~----------------~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~-~~v~vi~ 127 (501)
T 2ffu_A 65 LPATSVVITFHNEA----------------RSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKI-EKVRVLR 127 (501)
T ss_dssp CCCEEEEEEESSCC----------------HHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGB-TTEEEEE
T ss_pred CCCEEEEEEeCcCc----------------HHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcC-CCEEEEE
Confidence 35688888874321 12677777776543222 2788876543322233334433 3566664
Q ss_pred --CCCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE
Q 022657 142 --PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA 192 (294)
Q Consensus 142 --~~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~ 192 (294)
...+...+...|++.+. .++++++|+|. .+.++.+..+++.+.+....
T Consensus 128 ~~~n~G~~~A~N~G~~~A~--gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~ 177 (501)
T 2ffu_A 128 NDRREGLMRSRVRGADAAQ--AKVLTFLDSHC-ECNEHWLEPLLERVAEDRTR 177 (501)
T ss_dssp CSSCCHHHHHHHHHHHHCC--SSEEEECCSSE-EECTTCHHHHHHHHHHCTTE
T ss_pred CCCCcCHHHHHHHHHHhcC--CCEEEEECCCc-ccCccHHHHHHHHHHhCCCe
Confidence 33455777888888875 68999999996 45789999999998776543
No 69
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=83.89 E-value=2.9 Score=41.45 Aligned_cols=96 Identities=7% Similarity=-0.016 Sum_probs=62.6
Q ss_pred CCeehHHHHHHHHhccC----CCCeEEEEcCCCc----hHHHHHHHhhcCCceEEeCCC-CcHHHHHHHHHHhccc--CC
Q 022657 93 LGQPIALYSFYTFSRMV----EVKEIVVVCDPSY----SDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDF--NS 161 (294)
Q Consensus 93 ~GkpLl~~~i~~l~~~~----~i~~IvVv~~~~~----~~~~~~~~~~~~~~i~~v~~~-~~~~~sv~~al~~~~~--~~ 161 (294)
++...|..+|+.+.+.. ...+|+||=+... .+.+.+.++..+..+.++..+ .+...+.-.|++.+.. +.
T Consensus 190 N~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~N~G~a~a~N~Gl~~A~g~~~~ 269 (657)
T 4fix_A 190 NRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQPNLGGSGGYSRVMYEALKNTDC 269 (657)
T ss_dssp SCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 56778999999987532 2447877755432 113344444444567766433 3345555667766532 46
Q ss_pred CeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 162 ELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 162 ~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
++++++|.|. .++++.+..+++.+...
T Consensus 270 dyIlfLD~D~-~~~pd~L~~ll~~l~~~ 296 (657)
T 4fix_A 270 QQILFMDDDI-RLEPDSILRVLAMHRFA 296 (657)
T ss_dssp SEEEEECSSE-EECTHHHHHHHHHHHHB
T ss_pred CEEEEECCCC-ccChhHHHHHHHHHHhC
Confidence 8999999995 57899999999998765
No 70
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=83.52 E-value=7.9 Score=39.15 Aligned_cols=91 Identities=10% Similarity=0.111 Sum_probs=57.1
Q ss_pred ehHHHHHHHHhccCCCC---eEEEEcCCCch------------------HHHHHHHhhcCCceEEeCCC-CcHHHHHHHH
Q 022657 96 PIALYSFYTFSRMVEVK---EIVVVCDPSYS------------------DIFEETKEKINVDLKFSLPG-KERQDSVYSG 153 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~---~IvVv~~~~~~------------------~~~~~~~~~~~~~i~~v~~~-~~~~~sv~~a 153 (294)
.++..+++.+.+...-+ +|+||.+.... +.+++..++++..+.....+ .+...++..|
T Consensus 154 ~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~GKa~alN~g 233 (802)
T 4hg6_A 154 DMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGNMSAA 233 (802)
T ss_dssp HHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCCcchHHHHHH
Confidence 46688888886542222 68887764321 11223334444322222222 3346678888
Q ss_pred HHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhc
Q 022657 154 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 189 (294)
Q Consensus 154 l~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~ 189 (294)
++..+ .|+++++|+|. .+.++.++++++.+.+.
T Consensus 234 l~~a~--gd~Il~lDaD~-~~~pd~L~~lv~~~~~d 266 (802)
T 4hg6_A 234 LERLK--GELVVVFDADH-VPSRDFLARTVGYFVED 266 (802)
T ss_dssp HHHCC--CSEEEECCTTE-EECTTHHHHHHHHHHHS
T ss_pred HHhcC--CCEEEEECCCC-CcChHHHHHHHHHHhcC
Confidence 88875 68999999996 45899999999998654
No 71
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=83.01 E-value=3.7 Score=39.71 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=60.8
Q ss_pred ehHHHHHHHHhccCCCC---eEEEEcCCCc----hHHHHHHHhhcCCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEE
Q 022657 96 PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI 166 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~---~IvVv~~~~~----~~~~~~~~~~~~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv 166 (294)
..|..+|+.+.+...-+ +|+||-+... .+.++++..++ ..++++.. ..+...+...|++.+. .+++++
T Consensus 126 ~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~-~~v~vi~~~~n~G~~~A~N~G~~~A~--gd~i~f 202 (570)
T 2d7i_A 126 SSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALF-PSVRILRTKKREGLIRTRMLGASVAT--GDVITF 202 (570)
T ss_dssp HHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTS-TTEEEEECSSCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred HHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhC-CeEEEEECCCCCCHHHHHHHHHHhcC--CCEEEE
Confidence 46777777775432222 7888765432 23344444433 35666643 3456788888998875 689999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCcE
Q 022657 167 HDSARPLVLSKDVQKVLMDALRVGAA 192 (294)
Q Consensus 167 ~~~D~Pli~~~~i~~ll~~~~~~~~~ 192 (294)
+|+|.- ++++.+..+++.+.+....
T Consensus 203 LD~D~~-~~p~~L~~ll~~l~~~~~~ 227 (570)
T 2d7i_A 203 LDSHCE-ANVNWLPPLLDRIARNRKT 227 (570)
T ss_dssp CCSSEE-ECTTCSHHHHHHHHHCTTE
T ss_pred EcCCcc-ccccHHHHHHHHHHhCCCE
Confidence 999854 4888999999988765433
No 72
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=78.03 E-value=11 Score=36.45 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=70.2
Q ss_pred cccCCceeEEEEeCCCCCCCCCCCCceeeeeCCeehHHHHHHHHhccC--CCCeEEEEcCCCchHHHHHHHhhcC--Cce
Q 022657 62 VVKDKSVSVILLAGGRGKRMGANMPKQYLPLLGQPIALYSFYTFSRMV--EVKEIVVVCDPSYSDIFEETKEKIN--VDL 137 (294)
Q Consensus 62 m~~~~~i~aIILAaG~gsRmg~~~pK~Ll~l~GkpLl~~~i~~l~~~~--~i~~IvVv~~~~~~~~~~~~~~~~~--~~i 137 (294)
|...+++++||++-. ....|..+++.+.... .-.+|+||-+... +...+.++++. ..+
T Consensus 89 ~~~~p~vsviIp~~n-----------------~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i 150 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN-----------------RAKILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNI 150 (625)
T ss_dssp -CCCCCEEEEEEESS-----------------CHHHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCE
T ss_pred cccCCcEEEEEecCC-----------------cHHHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCe
Confidence 334467888888643 2356888888887542 1346777765432 33344454442 245
Q ss_pred EEeC-C--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHhcCcE
Q 022657 138 KFSL-P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA 192 (294)
Q Consensus 138 ~~v~-~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~~~~~ 192 (294)
.++. . +.+...+...|++.+. .++++++|+|.- ++++.+..+++.+...+..
T Consensus 151 ~~i~~~~~~~g~~~a~N~g~~~a~--g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~~~ 205 (625)
T 2z86_A 151 KYVRQKDYGYQLCAVRNLGLRAAK--YNYVAILDCDMA-PNPLWVQSYMELLAVDDNV 205 (625)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHCC--SSEEEEECTTEE-ECTTHHHHHHHHHHHCTTE
T ss_pred EEEEeCCCCcchhHHHHHHHHhCC--cCEEEEECCCCC-CCHHHHHHHHHHHhcCCce
Confidence 5442 2 2235677778888875 689999999964 4899999999998765543
No 73
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=73.35 E-value=24 Score=32.57 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHH----HhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh
Q 022657 143 GKERQDSVYSGL----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 143 ~~~~~~sv~~al----~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
..+...++..|+ .... .++++++|+|.--..++.+.++++....
T Consensus 73 n~GkG~Al~~G~~~Al~~a~--gd~vv~mDADlq~~~P~~i~~Ll~~l~~ 120 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLEETQ--WERIHFYDADITSFGPDWITKAEEAADF 120 (397)
T ss_dssp SSSHHHHHHHHHHHHHHHCC--CSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCHHHHHHHHHHHHc
Confidence 457788899999 5543 7899999998533579999999987754
No 74
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=61.75 E-value=7.1 Score=34.73 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=59.7
Q ss_pred ehHHHHHHHHhccCCCCeEEEEcCCCchHHHHHHHhhc---CCceEEeCCCCcHHHHHHHHHHhcccCCCeEEEecCCCC
Q 022657 96 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 172 (294)
Q Consensus 96 pLl~~~i~~l~~~~~i~~IvVv~~~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~sv~~al~~~~~~~~~vlv~~~D~P 172 (294)
.+|...++.+.+++.+++|+||=+.....--......+ ++.+.+..+..+....-..-...+ .++.|+.+|-|.
T Consensus 41 ~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~p~~~i--~T~AVLslDDDv- 117 (293)
T 1omz_A 41 DLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEV--ETNAVLMVDDDT- 117 (293)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTC--CSSEEEEECTTE-
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccCCCccC--CcCEEEEEcCCC-
Confidence 57888899999989999999998764210001111222 346666543322111111111222 268999999986
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEEEE
Q 022657 173 LVLSKDVQKVLMDALRVGAAVLGVP 197 (294)
Q Consensus 173 li~~~~i~~ll~~~~~~~~~i~~~~ 197 (294)
.++.+.|+...+..++..--+++++
T Consensus 118 ~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 118 LISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp EECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CCCHHHHHHHHHHHHHCccceecCc
Confidence 6899999888887776654454443
No 75
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=55.26 E-value=97 Score=28.53 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHhc-ccCCCeEEEecCCCCCCCHHHHHHHHHHHH
Q 022657 145 ERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDAL 187 (294)
Q Consensus 145 ~~~~sv~~al~~~-~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~ 187 (294)
+-..+++.|+..+ ....++|+++|+|. ..|..+.++.+.+.
T Consensus 144 GKG~Am~aGl~~A~~~~gd~Vv~~DaDl--~iP~~v~~~~kgy~ 185 (394)
T 2zu9_A 144 GKGEGMLVGLLLAKAIGAEYVGFVDADN--YIPGAVNEYVKDYA 185 (394)
T ss_dssp SHHHHHHHHHHHHHHTTCSEEEECCSCB--SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEEeCCC--CCHHHHHHHHHHhh
Confidence 5577788898877 11368999999997 45777777777654
No 76
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=37.70 E-value=6.9 Score=38.93 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred eEEEEcCCCchHH----HHHHHhhcCCceEEeCC--CCcHHHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 113 EIVVVCDPSYSDI----FEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 113 ~IvVv~~~~~~~~----~~~~~~~~~~~i~~v~~--~~~~~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
+|+||-+.. .|. +++...+++..++++.. ..+...+.-.|++.+. .++++++|+|.- +.++.+..+++.+
T Consensus 33 EIIVVDDgS-tD~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A~--gdyI~flD~Dd~-~~p~~l~~l~~~l 108 (729)
T 3l7i_A 33 NLIIVNDGS-TDQSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEVE--TPYFMFLDADDE-LASYAITFYLEKF 108 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEECCC-CCcHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhcc--CCEEEEECCCCC-CChhHHHHHHHHh
Confidence 566654433 232 33333333445666542 2334556666777665 689999999854 5889999999887
Q ss_pred Hh
Q 022657 187 LR 188 (294)
Q Consensus 187 ~~ 188 (294)
..
T Consensus 109 ~~ 110 (729)
T 3l7i_A 109 NN 110 (729)
T ss_dssp --
T ss_pred cC
Confidence 63
No 77
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=36.72 E-value=46 Score=27.90 Aligned_cols=39 Identities=5% Similarity=-0.014 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcccCCCeEEEecCCCCCCCHHHHHHHHHHHHh
Q 022657 147 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 188 (294)
Q Consensus 147 ~~sv~~al~~~~~~~~~vlv~~~D~Pli~~~~i~~ll~~~~~ 188 (294)
..+.-.|++.+. .++++++|+|.- +++..+.++++.+..
T Consensus 63 a~a~N~Gi~~A~--g~yl~fln~D~~-~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 63 FSWHKQMLPRCK--GRYVIFCHEDVE-LVDRGYDDLVAAIEA 101 (249)
T ss_dssp TTHHHHHGGGCC--SSEEEEEETTEE-CSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCEEEEECCCcc-cCccHHHHHHHHHHh
Confidence 344556776655 689999999964 488889999887765
No 78
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=33.38 E-value=2.4e+02 Score=25.18 Aligned_cols=96 Identities=7% Similarity=-0.058 Sum_probs=54.5
Q ss_pred eeeeCCeehHHHHHHHHhccC-CC--CeEEEEcCCCchHHHHHHHhhcCCceEEeC---------CCCcH--------HH
Q 022657 89 YLPLLGQPIALYSFYTFSRMV-EV--KEIVVVCDPSYSDIFEETKEKINVDLKFSL---------PGKER--------QD 148 (294)
Q Consensus 89 Ll~l~GkpLl~~~i~~l~~~~-~i--~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~---------~~~~~--------~~ 148 (294)
++...++|=+.++++.+.+.. .. .+|+|+-+... +...+.++.++..+..+. ..... ..
T Consensus 7 iI~~yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~-~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia~ 85 (343)
T 1fo8_A 7 LVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGH-EETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIAR 85 (343)
T ss_dssp EEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTC-HHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCC-HHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHhH
Confidence 344456776788888887753 22 35777665543 456667776654444321 11111 24
Q ss_pred HHHHHHHhccc--CCCeEEEecCCCCCCCHHHHHHHHHHH
Q 022657 149 SVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVLMDA 186 (294)
Q Consensus 149 sv~~al~~~~~--~~~~vlv~~~D~Pli~~~~i~~ll~~~ 186 (294)
.+..|+..+=+ ..+.+++++.|. .++++.+.-+.+.+
T Consensus 86 h~~~al~~vf~~~~~~~vIiLEDDl-~~spdF~~y~~~~l 124 (343)
T 1fo8_A 86 HYRWALGQIFHNFNYPAAVVVEDDL-EVAPDFFEYFQATY 124 (343)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEETTE-EECTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEEEcCCC-eECHHHHHHHHHHH
Confidence 45556554311 367888888884 46777776555544
No 79
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=20.15 E-value=3.5e+02 Score=23.51 Aligned_cols=101 Identities=7% Similarity=0.033 Sum_probs=52.9
Q ss_pred eCCeehHHHHHHHHhcc-CCCCeEEEEcCCCchHHHHHHHhhcCCceEEeC-----CCCcHHHHHHHHHHhcccCCCeEE
Q 022657 92 LLGQPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFNSELVC 165 (294)
Q Consensus 92 l~GkpLl~~~i~~l~~~-~~i~~IvVv~~~~~~~~~~~~~~~~~~~i~~v~-----~~~~~~~sv~~al~~~~~~~~~vl 165 (294)
-+|..-+..++..+... ..-++|++. .+.+.. +...++..|.++..+. .+.-..+.+...++.+.+...+++
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~-~p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 180 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLP-KPSWGN-HTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEE-ESCCTT-HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEE
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEc-CCCchh-HHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEE
Confidence 35566666666655411 112555554 333322 3344455565544432 111125556667766433334555
Q ss_pred EecCCCCC---CCHHHHHHHHHHHHhcCcEEE
Q 022657 166 IHDSARPL---VLSKDVQKVLMDALRVGAAVL 194 (294)
Q Consensus 166 v~~~D~Pl---i~~~~i~~ll~~~~~~~~~i~ 194 (294)
++....|. .+.+.++++++.+++++..++
T Consensus 181 i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li 212 (401)
T 7aat_A 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAY 212 (401)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 55444443 577889999988887775444
No 80
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=20.11 E-value=69 Score=20.00 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=15.7
Q ss_pred ecCCCHHHHHHHHHHHhhhh
Q 022657 272 IKVTTPDDLLIAERILNLSS 291 (294)
Q Consensus 272 idVdTpeDL~~ae~~l~~~~ 291 (294)
+.=..|+||..|.+++..+.
T Consensus 17 l~s~~P~Dlq~AN~LiK~mv 36 (45)
T 1j2j_B 17 LKSSHPEDLRAANKLIKEMV 36 (45)
T ss_dssp HTCSCHHHHHHHHHHHHHHH
T ss_pred HHcCChhhHHHHHHHHHHHh
Confidence 44578999999999887653
Done!