BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022660
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 217 bits (552), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 131/206 (63%), Gaps = 5/206 (2%)
Query: 80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
++ F++ L QL V++ K PE +NSPY FP YAE
Sbjct: 1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60
Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
I ST LSEVA+ I ++GGSIPE +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61 I-----PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115
Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
FDID+PGKITF ESK+L+ G++ + DT ++G+GICYD+RF ELA IY RG L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175
Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
PGAFN+TTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNLTTGPAHWELLQRARAVDNQV 201
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER--SGDRLY 178
PE +NSPYS D F Y+E I+ + S S LS +A KI +VGG+IPE D++Y
Sbjct: 52 PECFNSPYSTDQFRKYSEVINPK-EPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIY 110
Query: 179 NTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICY 238
NT +F DGKLI KHRK+HLFD+DIP I+F ES++L+ GE T +DT G+ G+GICY
Sbjct: 111 NTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICY 170
Query: 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
D+RF ELAM+ +GA + YP AFN TGPLHW LL R+RA DNQV
Sbjct: 171 DMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQV 217
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 178 YNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG-ETPTIVDTDVGRIGIGI 236
+NT + SDG A++ K+HLFD++IPGK+ +ES+ AG E VDT +GR+G+ I
Sbjct: 109 WNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSI 168
Query: 237 CYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
CYD+RF EL++ RGA L+ +P AF + TG HWE L RARA +NQ
Sbjct: 169 CYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQ 216
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 122 EIWNSPY---SHDSFPV--YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--- 173
E W P+ + + FP +AE+ + G P+T ML+E+A+ + I+ SI ER
Sbjct: 120 EAWTMPFAFCTREKFPWCEFAEEAENG----PTTKMLAELAKAYNMVIIH-SILERDMEH 174
Query: 174 GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT-IVDTDVGRI 232
G+ ++NT V + G+ + KHRK H IP F ES G T + +T+ G++
Sbjct: 175 GETIWNTAVVISNSGRYLGKHRKNH-----IPRVGDFNESTYYMEGNTGHPVFETEFGKL 229
Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPGA-FNMTTGPLHWELLQRARATDN 283
+ ICY + M++G GA ++ P A + PL W + R A N
Sbjct: 230 AVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPL-WSIEARNAAIAN 280
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 27/149 (18%)
Query: 121 PEIWNSPYSHDS----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
PE++++ Y+ +S F V A+ I G +T L E+AR L + IV G+ E+SG+
Sbjct: 41 PELFDTGYNFESREEVFDV-AQQIPEG----ETTTFLXELARELGLYIVAGT-AEKSGNY 94
Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDI----PGKITFIESKSLTAGETPTIVDTDVGRI 232
LYN+ V G G I K+RKIHLF + PG + F + D ++
Sbjct: 95 LYNSAVVVGPRG-YIGKYRKIHLFYREKVFFEPGDLGF------------KVFDIGFAKV 141
Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPG 261
G+ IC+D F E A +GA +I +P
Sbjct: 142 GVXICFDWFFPESARTLALKGAEIIAHPA 170
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNT 180
PE WN+ Y + A++ + S + + +A K+ IV GS+ ++++NT
Sbjct: 60 PEXWNNGYDLEHLNEKADN-----NLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNT 114
Query: 181 CCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVGRIGIGICY 238
G+LI ++ K+HL +P E + LTAGE +D + ICY
Sbjct: 115 AFSVNKSGQLINEYDKVHL----VP---XLREHEFLTAGEYVAEPFQLSDGTYVTQLICY 167
Query: 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
D+RF EL + Y AR I + A + HW L +ARA +N
Sbjct: 168 DLRFPEL-LRYPARSGAKIAFYVAQWPXSRLQHWHSLLKARAIENN 212
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 121 PEIWNSPYSHDS----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
PE++++ Y+ ++ F + A+ I G +T L +VAR + IV G+ E+ GD
Sbjct: 41 PELFDTGYNFETREEVFEI-AQKIPEG----ETTTFLMDVARDTGVYIVAGT-AEKDGDV 94
Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDI----PGKITFIESKSLTAGETPTIVDTDVGRI 232
LYN+ V G G I K+RKIHLF + PG + F + D ++
Sbjct: 95 LYNSAVVVGPRG-FIGKYRKIHLFYREKFFFEPGDLGF------------RVFDLGFMKV 141
Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
G+ I +D F E A +GA +I +P M P + RA +N+V
Sbjct: 142 GVMIXFDWFFPESARTLALKGADVIAHPANLVMPYAPRAMPI----RALENKV 190
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
R +NT + GK++ K+RKIHL PG + +E + G+ + D
Sbjct: 106 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 160
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
D ++G+ IC D R+ E + G RGA +IC G +N T
Sbjct: 161 VDAAKMGMFICNDRRWPEAWRVMGLRGAEIIC--GGYNTPT 199
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
R +NT + GK++ K+RKIHL PG + +E + G+ + D
Sbjct: 107 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 161
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
D ++G+ IC D R+ E + G +GA +IC G +N T
Sbjct: 162 VDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPT 200
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
R +NT + GK++ K+RKIHL PG + +E + G+ + D
Sbjct: 107 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 161
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
D ++G+ IC D R+ E + G +GA +IC G +N T
Sbjct: 162 VDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPT 200
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
R +NT + GK++ K+RKIHL PG + +E + G+ + D
Sbjct: 107 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 161
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
D ++G+ IC D R+ E + G +GA +IC G +N T
Sbjct: 162 VDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPT 200
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
R +NT + GK++ K+RKIHL PG + +E + G+ + D
Sbjct: 106 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 160
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
D ++G+ I D R+ E + G RGA +IC G +N T
Sbjct: 161 VDAAKMGMFIANDRRWPEAWRVMGLRGAEIIC--GGYNTPT 199
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 30/174 (17%)
Query: 121 PEIWNSPY--SHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV----GGSIPERSG 174
PE++ Y S V AE +DA + + L +AR I +V G PE+ G
Sbjct: 60 PELFGFGYVPSQICAQVSAEQVDA------ARSRLRGIARDRGIALVWSLPGPEGPEQRG 113
Query: 175 DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGR-IG 233
T + G+++A ++K+ L+ + E + GE P V + GR +
Sbjct: 114 ----ITAELADEHGEVLASYQKVQLYGPE--------EKAAFVPGEQPPPVLSWGGRQLS 161
Query: 234 IGICYDIRFQELAMIYGARGAHLICYPGAF--NMTTGPLHWELLQRARATDNQV 285
+ +CYD+ F E+ ARGA L+ P A + T+ P +L ARA +N +
Sbjct: 162 LLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVP---GILLPARAVENGI 212
>pdb|2E11|A Chain A, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|B Chain B, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|C Chain C, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|D Chain D, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
Length = 266
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 66/173 (38%), Gaps = 30/173 (17%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNT 180
PE + S +S+++ AED+D P+ A + A L I G S+ R+ ++N
Sbjct: 42 PETFTSGFSNEAID-KAEDMDG-----PTVAWIRTQAARLGAAITG-SVQLRTEHGVFNR 94
Query: 181 CCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240
DG L + K HLF E AG V+ RI +CYD+
Sbjct: 95 LLWATPDGAL-QYYDKRHLFRFGN-------EHLRYAAGRERLCVEWKGWRINPQVCYDL 146
Query: 241 RFQELAMIYGARGAHLICYPGAFNM----------TTGPLHWELLQRARATDN 283
RF R + PG + + W+ L RARA +N
Sbjct: 147 RFPVF-----CRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIEN 194
>pdb|3TK2|A Chain A, Crystallographic Structure Of Phenylalanine Hydroxylase
From Chromobacterium Violaceum Cocrystallized With
Phenylalanine In A Site Distal To The Active Site
pdb|3TK4|A Chain A, Crystal Structure Of Phenylalanine Hydroxylase From
Chromobacterium Violaceum Bound To Cobalt
Length = 302
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 121 PEIWNSPYSHDSF---PVYAEDIDA---GGDASPSTAMLSEVARLLKITIVGGSIPERSG 174
P++++ + H PV+A+ ++A GG + + L +ARL T+ G I +G
Sbjct: 139 PDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWYTVEFGLINTPAG 198
Query: 175 DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF 210
R+Y G L +K I+ D P ++ F
Sbjct: 199 MRIYGA-------GILSSKSESIYCLDSASPNRVGF 227
>pdb|3TCY|A Chain A, Crystallographic Structure Of Phenylalanine Hydroxylase
From Chromobacterium Violaceum (Cpah) Bound To
Phenylalanine In A Site Distal To The Active Site
Length = 302
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 121 PEIWNSPYSHDSF---PVYAEDIDA---GGDASPSTAMLSEVARLLKITIVGGSIPERSG 174
P++++ + H PV+A+ ++A GG + + L +ARL T+ G I +G
Sbjct: 139 PDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWYTVEFGLINTPAG 198
Query: 175 DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF 210
R+Y G L +K I+ D P ++ F
Sbjct: 199 MRIYGA-------GILSSKSESIYCLDSASPNRVGF 227
>pdb|1LTU|A Chain A, Crystal Structure Of Chromobacterium Violaceum, Apo (No
Iron Bound) Structure
pdb|1LTV|A Chain A, Crystal Structure Of Chromobacterium Violaceum
Phenylalanine Hydroxylase, Structure With Bound Oxidized
Fe(Iii)
pdb|1LTZ|A Chain A, Crystal Structure Of Chromobacterium Violaceum
Phenylalanine Hydroxylase, Structure Has Bound Iron
(iii) And Oxidized Cofactor 7,8-dihydrobiopterin
Length = 297
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 121 PEIWNSPYSHDSF---PVYAEDIDA---GGDASPSTAMLSEVARLLKITIVGGSIPERSG 174
P++++ + H PV+A+ ++A GG + + L +ARL T+ G I +G
Sbjct: 134 PDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWYTVEFGLINTPAG 193
Query: 175 DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF 210
R+Y G L +K I+ D P ++ F
Sbjct: 194 MRIYGA-------GILSSKSESIYCLDSASPNRVGF 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,393,300
Number of Sequences: 62578
Number of extensions: 268386
Number of successful extensions: 445
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 21
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)