Query 022660
Match_columns 294
No_of_seqs 147 out of 1402
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02798 nitrilase 100.0 7E-41 1.5E-45 307.2 25.7 210 78-292 6-219 (286)
2 cd07572 nit Nit1, Nit 2, and r 100.0 6.8E-41 1.5E-45 302.9 24.3 206 84-292 1-208 (265)
3 cd07587 ML_beta-AS mammalian-l 100.0 1.1E-40 2.3E-45 315.2 25.7 210 73-292 54-280 (363)
4 TIGR03381 agmatine_aguB N-carb 100.0 5.5E-40 1.2E-44 299.2 25.0 203 83-292 1-211 (279)
5 PRK10438 C-N hydrolase family 100.0 9.4E-40 2E-44 295.4 23.7 192 80-292 1-193 (256)
6 cd07583 nitrilase_5 Uncharacte 100.0 1E-39 2.3E-44 293.6 23.8 196 84-292 1-197 (253)
7 cd07568 ML_beta-AS_like mammal 100.0 3.4E-39 7.3E-44 295.7 25.3 205 81-292 2-217 (287)
8 PLN00202 beta-ureidopropionase 100.0 3.1E-39 6.8E-44 308.7 25.0 202 80-292 84-301 (405)
9 cd07579 nitrilase_1_R2 Second 100.0 1.6E-39 3.4E-44 297.6 21.9 190 84-292 1-209 (279)
10 cd07567 biotinidase_like bioti 100.0 3.4E-39 7.3E-44 297.6 22.3 199 83-292 1-236 (299)
11 cd07576 R-amidase_like Pseudom 100.0 1.3E-38 2.9E-43 286.2 23.5 195 84-292 1-196 (254)
12 cd07564 nitrilases_CHs Nitrila 100.0 1E-38 2.2E-43 294.4 23.1 200 83-292 1-214 (297)
13 PLN02504 nitrilase 100.0 2.9E-38 6.4E-43 297.1 25.6 202 78-293 20-238 (346)
14 PLN02747 N-carbamolyputrescine 100.0 4.5E-38 9.7E-43 289.8 25.1 207 79-292 3-217 (296)
15 COG0388 Predicted amidohydrola 100.0 5.2E-38 1.1E-42 286.2 24.0 201 82-292 2-205 (274)
16 cd07584 nitrilase_6 Uncharacte 100.0 4.8E-38 1E-42 283.6 23.3 197 84-292 1-200 (258)
17 cd07581 nitrilase_3 Uncharacte 100.0 6.4E-38 1.4E-42 282.1 23.9 197 85-292 1-203 (255)
18 cd07580 nitrilase_2 Uncharacte 100.0 3.2E-38 7E-43 286.5 22.1 197 84-292 1-204 (268)
19 cd07573 CPA N-carbamoylputresc 100.0 7.9E-38 1.7E-42 285.9 24.7 203 83-292 1-214 (284)
20 cd07570 GAT_Gln-NAD-synth Glut 100.0 2E-38 4.4E-43 286.5 19.9 199 84-292 1-202 (261)
21 cd07565 aliphatic_amidase alip 100.0 1.2E-37 2.5E-42 286.8 23.9 193 83-292 1-207 (291)
22 cd07574 nitrilase_Rim1_like Un 100.0 7E-38 1.5E-42 285.9 22.1 200 83-292 1-208 (280)
23 cd07569 DCase N-carbamyl-D-ami 100.0 3E-37 6.4E-42 285.3 24.2 210 81-292 2-235 (302)
24 cd07585 nitrilase_7 Uncharacte 100.0 2.6E-37 5.5E-42 279.3 23.0 194 84-292 1-198 (261)
25 KOG0807 Carbon-nitrogen hydrol 100.0 5.3E-38 1.1E-42 271.9 14.0 205 83-292 16-225 (295)
26 cd07578 nitrilase_1_R1 First n 100.0 9.4E-37 2E-41 275.6 22.5 193 83-292 1-198 (258)
27 cd07577 Ph0642_like Pyrococcus 100.0 7.2E-37 1.6E-41 276.4 21.4 190 84-292 1-192 (259)
28 cd07575 Xc-1258_like Xanthomon 100.0 2.1E-36 4.5E-41 272.6 22.4 191 83-292 1-192 (252)
29 cd07197 nitrilase Nitrilase su 100.0 3.7E-36 8.1E-41 269.1 23.8 196 85-292 1-197 (253)
30 cd07571 ALP_N-acyl_transferase 100.0 1.6E-36 3.4E-41 276.4 19.9 195 83-292 1-218 (270)
31 cd07586 nitrilase_8 Uncharacte 100.0 5.9E-36 1.3E-40 271.5 22.1 195 84-292 1-204 (269)
32 cd07582 nitrilase_4 Uncharacte 100.0 1.2E-35 2.6E-40 273.6 23.9 207 84-292 2-228 (294)
33 PRK13286 amiE acylamide amidoh 100.0 8.4E-36 1.8E-40 279.9 22.6 199 78-292 8-220 (345)
34 cd07566 ScNTA1_like Saccharomy 100.0 6.2E-36 1.3E-40 275.7 21.2 205 84-292 1-248 (295)
35 PRK13287 amiF formamidase; Pro 100.0 3.2E-35 7E-40 275.2 24.8 198 78-292 9-219 (333)
36 KOG0806 Carbon-nitrogen hydrol 100.0 1.7E-36 3.6E-41 273.3 14.0 218 75-292 6-229 (298)
37 PRK13981 NAD synthetase; Provi 100.0 3.2E-35 7E-40 291.5 23.6 197 83-292 1-201 (540)
38 TIGR00546 lnt apolipoprotein N 100.0 2.6E-34 5.6E-39 274.6 17.2 198 81-292 158-378 (391)
39 PRK02628 nadE NAD synthetase; 100.0 1.5E-33 3.2E-38 285.6 23.2 205 78-292 8-235 (679)
40 PF00795 CN_hydrolase: Carbon- 100.0 5.9E-33 1.3E-37 237.9 17.1 171 84-262 1-186 (186)
41 PLN02339 NAD+ synthase (glutam 100.0 4.7E-32 1E-36 274.6 22.1 202 80-292 1-231 (700)
42 PRK00302 lnt apolipoprotein N- 100.0 2.8E-32 6E-37 268.6 17.7 197 81-292 218-438 (505)
43 PRK12291 apolipoprotein N-acyl 100.0 1.3E-30 2.9E-35 250.6 19.9 186 83-291 195-401 (418)
44 KOG0805 Carbon-nitrogen hydrol 100.0 2.3E-28 5E-33 212.7 15.7 201 78-294 13-232 (337)
45 COG0815 Lnt Apolipoprotein N-a 99.9 1.3E-26 2.8E-31 227.5 17.7 199 78-291 223-448 (518)
46 PRK13825 conjugal transfer pro 99.9 5.3E-26 1.1E-30 216.3 20.4 187 84-291 187-386 (388)
47 KOG0808 Carbon-nitrogen hydrol 99.9 5.6E-21 1.2E-25 167.8 16.1 223 58-291 50-289 (387)
48 KOG2303 Predicted NAD synthase 99.5 2.9E-14 6.3E-19 135.2 7.9 171 80-263 2-202 (706)
49 cd07565 aliphatic_amidase alip 80.9 12 0.00026 34.3 9.2 71 106-193 161-232 (291)
50 cd07572 nit Nit1, Nit 2, and r 73.8 10 0.00023 33.7 6.5 70 106-191 161-232 (265)
51 cd07570 GAT_Gln-NAD-synth Glut 72.9 16 0.00034 32.5 7.4 70 109-193 157-227 (261)
52 cd07567 biotinidase_like bioti 71.8 17 0.00037 33.6 7.6 68 109-194 191-260 (299)
53 cd07576 R-amidase_like Pseudom 71.8 27 0.0006 30.7 8.7 68 108-192 152-220 (254)
54 cd07580 nitrilase_2 Uncharacte 71.5 35 0.00076 30.4 9.4 74 108-192 154-228 (268)
55 cd07584 nitrilase_6 Uncharacte 69.9 35 0.00076 30.1 9.0 69 107-192 155-224 (258)
56 PRK09856 fructoselysine 3-epim 69.4 19 0.00042 32.2 7.3 64 96-167 85-148 (275)
57 cd07587 ML_beta-AS mammalian-l 69.3 18 0.0004 34.4 7.4 66 110-191 237-319 (363)
58 TIGR03381 agmatine_aguB N-carb 68.5 48 0.001 29.6 9.7 75 108-192 160-239 (279)
59 PRK13286 amiE acylamide amidoh 67.8 42 0.0009 31.8 9.4 71 106-193 174-245 (345)
60 cd07586 nitrilase_8 Uncharacte 67.8 42 0.0009 29.9 9.1 73 110-192 155-228 (269)
61 cd07585 nitrilase_7 Uncharacte 67.3 34 0.00074 30.3 8.4 73 107-192 149-222 (261)
62 cd07568 ML_beta-AS_like mammal 67.3 38 0.00082 30.6 8.8 70 107-192 171-244 (287)
63 PRK13210 putative L-xylulose 5 64.6 29 0.00062 31.1 7.4 64 96-167 89-152 (284)
64 cd07582 nitrilase_4 Uncharacte 64.3 46 0.001 30.3 8.8 70 107-192 182-256 (294)
65 PRK15018 1-acyl-sn-glycerol-3- 64.1 25 0.00054 31.6 6.8 58 94-166 119-176 (245)
66 PLN02274 inosine-5'-monophosph 63.2 43 0.00092 33.5 8.8 61 230-292 237-297 (505)
67 cd07573 CPA N-carbamoylputresc 63.2 58 0.0012 29.2 9.1 78 107-192 160-242 (284)
68 cd07577 Ph0642_like Pyrococcus 63.0 49 0.0011 29.3 8.5 65 108-192 151-220 (259)
69 TIGR00530 AGP_acyltrn 1-acyl-s 62.4 29 0.00063 26.8 6.2 51 101-166 76-126 (130)
70 cd07581 nitrilase_3 Uncharacte 61.4 48 0.001 29.2 8.1 68 107-192 156-223 (255)
71 PLN02798 nitrilase 59.7 40 0.00087 30.6 7.5 70 107-192 172-244 (286)
72 PLN00202 beta-ureidopropionase 59.3 37 0.00079 32.9 7.4 65 111-191 259-340 (405)
73 TIGR00542 hxl6Piso_put hexulos 59.3 45 0.00098 30.0 7.7 62 97-166 90-151 (279)
74 cd07583 nitrilase_5 Uncharacte 57.6 50 0.0011 29.1 7.6 70 106-192 151-221 (253)
75 PLN02504 nitrilase 56.1 50 0.0011 31.2 7.6 65 108-192 196-281 (346)
76 PLN02747 N-carbamolyputrescine 55.8 1.1E+02 0.0023 27.8 9.6 76 107-192 165-249 (296)
77 PRK13209 L-xylulose 5-phosphat 55.8 46 0.001 29.9 7.2 63 96-166 94-156 (283)
78 COG0388 Predicted amidohydrola 55.4 56 0.0012 29.2 7.6 66 111-192 163-230 (274)
79 PF01553 Acyltransferase: Acyl 53.4 32 0.00069 26.6 5.1 51 100-165 77-127 (132)
80 cd01821 Rhamnogalacturan_acety 53.1 60 0.0013 27.3 7.1 63 95-165 88-150 (198)
81 cd07197 nitrilase Nitrilase su 52.6 64 0.0014 28.0 7.4 68 108-192 153-221 (253)
82 PF01784 NIF3: NIF3 (NGG1p int 51.8 44 0.00096 29.7 6.2 59 231-290 32-94 (241)
83 smart00563 PlsC Phosphate acyl 50.8 41 0.0009 25.1 5.2 52 98-165 60-111 (118)
84 PF09587 PGA_cap: Bacterial ca 49.2 96 0.0021 27.5 8.0 71 220-290 119-222 (250)
85 PRK13981 NAD synthetase; Provi 47.7 88 0.0019 31.3 8.3 72 107-193 154-226 (540)
86 PRK10438 C-N hydrolase family 47.4 86 0.0019 27.9 7.4 64 113-193 154-219 (256)
87 KOG2733 Uncharacterized membra 47.1 62 0.0013 31.1 6.5 58 234-293 66-146 (423)
88 smart00481 POLIIIAc DNA polyme 44.4 85 0.0018 21.6 5.6 45 102-167 16-60 (67)
89 cd07578 nitrilase_1_R1 First n 43.6 1.3E+02 0.0028 26.6 8.0 66 108-192 156-222 (258)
90 cd00019 AP2Ec AP endonuclease 43.1 56 0.0012 29.3 5.6 63 96-167 80-142 (279)
91 PF14488 DUF4434: Domain of un 41.8 1.1E+02 0.0024 25.7 6.8 70 97-168 16-85 (166)
92 PF01261 AP_endonuc_2: Xylose 41.1 1.1E+02 0.0024 25.3 6.9 65 97-167 67-131 (213)
93 cd01828 sialate_O-acetylestera 40.2 1.7E+02 0.0037 23.6 7.7 72 84-165 50-128 (169)
94 cd07564 nitrilases_CHs Nitrila 40.1 1.1E+02 0.0025 27.8 7.2 73 106-192 165-253 (297)
95 TIGR00486 YbgI_SA1388 dinuclea 39.9 94 0.002 27.8 6.4 57 232-290 37-97 (249)
96 COG1131 CcmA ABC-type multidru 38.9 88 0.0019 28.7 6.2 72 107-193 147-218 (293)
97 cd07569 DCase N-carbamyl-D-ami 38.6 2.1E+02 0.0046 26.0 8.8 39 154-192 220-259 (302)
98 cd07993 LPLAT_DHAPAT-like Lyso 38.2 1.2E+02 0.0025 26.1 6.6 27 101-127 88-114 (205)
99 PRK10799 metal-binding protein 38.0 1.2E+02 0.0025 27.2 6.7 57 233-290 37-96 (247)
100 PRK13287 amiF formamidase; Pro 37.9 2.6E+02 0.0056 26.2 9.3 70 107-193 174-244 (333)
101 KOG0806 Carbon-nitrogen hydrol 37.7 25 0.00054 32.7 2.3 42 158-201 110-151 (298)
102 PF08821 CGGC: CGGC domain; I 37.7 1.2E+02 0.0026 23.7 5.9 55 100-168 51-106 (107)
103 cd07990 LPLAT_LCLAT1-like Lyso 37.7 78 0.0017 26.8 5.4 50 98-166 86-137 (193)
104 cd07986 LPLAT_ACT14924-like Ly 37.7 77 0.0017 27.3 5.4 59 98-166 83-141 (210)
105 PTZ00314 inosine-5'-monophosph 37.7 2.4E+02 0.0051 28.2 9.4 61 230-292 230-290 (495)
106 COG1120 FepC ABC-type cobalami 37.2 1.1E+02 0.0024 27.8 6.5 76 101-191 143-218 (258)
107 PF07355 GRDB: Glycine/sarcosi 35.8 1.4E+02 0.0031 28.4 7.0 61 228-290 47-117 (349)
108 PRK09461 ansA cytoplasmic aspa 35.7 2.2E+02 0.0049 26.7 8.5 61 230-292 210-272 (335)
109 cd04501 SGNH_hydrolase_like_4 35.4 1.7E+02 0.0037 24.0 7.0 76 84-165 61-142 (183)
110 cd03012 TlpA_like_DipZ_like Tl 35.3 2.1E+02 0.0045 22.1 7.3 91 84-193 24-121 (126)
111 cd07988 LPLAT_ABO13168-like Ly 33.7 96 0.0021 25.7 5.2 35 114-166 95-129 (163)
112 PF02126 PTE: Phosphotriestera 33.3 1E+02 0.0022 28.7 5.7 53 96-168 33-85 (308)
113 cd02968 SCO SCO (an acronym fo 33.0 1.3E+02 0.0028 23.5 5.7 42 152-195 97-141 (142)
114 KOG2792 Putative cytochrome C 32.6 95 0.0021 28.4 5.1 98 97-198 156-262 (280)
115 PRK09997 hydroxypyruvate isome 32.4 1.6E+02 0.0034 26.1 6.7 61 96-166 80-142 (258)
116 PF00809 Pterin_bind: Pterin b 31.4 77 0.0017 27.6 4.4 52 232-290 71-122 (210)
117 cd01832 SGNH_hydrolase_like_1 31.3 2.1E+02 0.0045 23.4 6.9 63 95-165 86-149 (185)
118 smart00870 Asparaginase Aspara 31.1 2.2E+02 0.0048 26.6 7.6 61 230-292 212-272 (323)
119 PF00795 CN_hydrolase: Carbon- 30.8 1.6E+02 0.0035 24.2 6.1 45 246-290 27-90 (186)
120 cd00411 Asparaginase Asparagin 30.8 2.2E+02 0.0048 26.6 7.6 61 230-292 210-270 (323)
121 PRK10528 multifunctional acyl- 30.6 1.7E+02 0.0036 24.7 6.3 69 84-165 73-146 (191)
122 cd01841 NnaC_like NnaC (CMP-Ne 30.4 2.3E+02 0.005 22.9 7.0 75 84-165 53-134 (174)
123 cd01838 Isoamyl_acetate_hydrol 30.0 2.1E+02 0.0044 23.5 6.7 75 82-165 63-160 (199)
124 cd07574 nitrilase_Rim1_like Un 29.9 1.9E+02 0.0041 25.8 6.8 45 107-167 162-206 (280)
125 cd01822 Lysophospholipase_L1_l 29.6 2.6E+02 0.0055 22.5 7.1 69 84-165 66-139 (177)
126 cd03293 ABC_NrtD_SsuB_transpor 29.5 2.6E+02 0.0057 23.9 7.4 73 107-193 142-215 (220)
127 PTZ00056 glutathione peroxidas 29.4 3.6E+02 0.0079 23.1 9.0 38 84-121 40-79 (199)
128 COG1504 Uncharacterized conser 29.3 1.9E+02 0.0041 22.9 5.6 93 172-275 13-107 (121)
129 smart00642 Aamy Alpha-amylase 29.0 2.5E+02 0.0054 23.4 6.9 64 100-167 18-89 (166)
130 PRK12677 xylose isomerase; Pro 28.4 3.6E+02 0.0079 25.9 8.8 64 97-166 110-177 (384)
131 PTZ00261 acyltransferase; Prov 28.3 1.6E+02 0.0036 28.1 6.2 52 100-165 201-252 (355)
132 PLN02901 1-acyl-sn-glycerol-3- 27.8 2E+02 0.0044 24.8 6.4 55 97-167 106-160 (214)
133 cd06551 LPLAT Lysophospholipid 27.6 3.1E+02 0.0067 22.4 7.4 47 107-167 93-140 (187)
134 cd01825 SGNH_hydrolase_peri1 S 27.4 3E+02 0.0065 22.4 7.2 75 84-165 58-141 (189)
135 PF13472 Lipase_GDSL_2: GDSL-l 26.7 2.7E+02 0.0059 21.8 6.7 75 84-165 63-147 (179)
136 PF09587 PGA_cap: Bacterial ca 26.5 2.7E+02 0.0058 24.6 7.1 67 100-181 170-237 (250)
137 TIGR01918 various_sel_PB selen 25.9 2.5E+02 0.0055 27.5 7.0 64 225-290 40-113 (431)
138 TIGR01917 gly_red_sel_B glycin 25.8 2.5E+02 0.0055 27.5 7.0 61 228-290 43-113 (431)
139 cd07388 MPP_Tt1561 Thermus the 25.8 77 0.0017 28.1 3.4 34 82-120 4-37 (224)
140 COG2706 3-carboxymuconate cycl 25.4 1.4E+02 0.0031 28.3 5.2 56 182-238 150-210 (346)
141 KOG2178 Predicted sugar kinase 25.3 3.5E+02 0.0076 26.3 7.8 125 97-258 105-230 (409)
142 COG0566 SpoU rRNA methylases [ 25.3 2.1E+02 0.0046 25.8 6.3 65 103-167 123-189 (260)
143 COG0252 AnsB L-asparaginase/ar 24.4 3.3E+02 0.0071 26.0 7.5 62 229-292 229-291 (351)
144 cd03018 PRX_AhpE_like Peroxire 24.3 2.8E+02 0.0062 21.7 6.3 28 94-121 42-69 (149)
145 COG1135 AbcC ABC-type metal io 24.3 1.2E+02 0.0026 28.6 4.4 76 103-194 148-224 (339)
146 cd03297 ABC_ModC_molybdenum_tr 24.3 2.7E+02 0.0059 23.7 6.6 70 107-191 142-211 (214)
147 PF13342 Toprim_Crpt: C-termin 23.9 1.6E+02 0.0034 20.6 4.0 41 149-191 17-57 (62)
148 PRK11096 ansB L-asparaginase I 23.8 2.9E+02 0.0064 26.2 7.1 61 230-292 233-293 (347)
149 cd01829 SGNH_hydrolase_peri2 S 23.8 3.6E+02 0.0077 22.3 7.1 56 98-165 92-147 (200)
150 cd07579 nitrilase_1_R2 Second 23.8 2.2E+02 0.0048 25.7 6.1 45 246-290 24-77 (279)
151 COG2089 SpsE Sialic acid synth 23.5 5.5E+02 0.012 24.4 8.5 82 81-166 14-108 (347)
152 PRK09989 hypothetical protein; 22.8 2.6E+02 0.0056 24.7 6.3 62 96-166 80-142 (258)
153 CHL00200 trpA tryptophan synth 22.7 1.9E+02 0.0041 26.3 5.4 30 234-263 205-234 (263)
154 PF02630 SCO1-SenC: SCO1/SenC; 22.5 1.5E+02 0.0034 24.7 4.5 47 149-195 123-172 (174)
155 TIGR01302 IMP_dehydrog inosine 22.4 7.4E+02 0.016 24.2 9.9 96 179-292 176-273 (450)
156 TIGR00520 asnASE_II L-asparagi 22.2 3.7E+02 0.0081 25.5 7.5 61 230-292 239-299 (349)
157 COG4586 ABC-type uncharacteriz 22.1 3.2E+02 0.007 25.5 6.6 68 110-192 170-237 (325)
158 COG1121 ZnuC ABC-type Mn/Zn tr 21.9 2.6E+02 0.0057 25.4 6.0 68 103-185 146-213 (254)
159 PRK09875 putative hydrolase; P 21.9 2.1E+02 0.0045 26.4 5.6 49 100-168 33-81 (292)
160 cd07241 Glo_EDI_BRP_like_3 Thi 21.7 3.3E+02 0.0071 20.1 6.0 41 149-192 83-123 (125)
161 cd07992 LPLAT_AAK14816-like Ly 21.5 1.3E+02 0.0028 25.7 3.9 26 101-126 97-122 (203)
162 PRK06843 inosine 5-monophospha 21.3 2.8E+02 0.0061 27.0 6.5 61 230-292 142-202 (404)
163 COG1082 IolE Sugar phosphate i 21.1 4.3E+02 0.0094 23.1 7.4 65 97-167 80-145 (274)
164 cd07266 HPCD_N_class_II N-term 20.7 2.1E+02 0.0046 21.4 4.7 45 148-194 72-116 (121)
165 cd03256 ABC_PhnC_transporter A 20.6 3.5E+02 0.0077 23.3 6.7 70 107-191 155-224 (241)
166 cd03298 ABC_ThiQ_thiamine_tran 20.5 3.8E+02 0.0083 22.6 6.7 70 107-191 139-208 (211)
167 TIGR01184 ntrCD nitrate transp 20.5 3.4E+02 0.0073 23.5 6.5 71 106-191 124-194 (230)
168 cd00984 DnaB_C DnaB helicase C 20.3 3.1E+02 0.0066 23.7 6.2 62 100-168 108-170 (242)
169 TIGR02153 gatD_arch glutamyl-t 20.3 4.3E+02 0.0093 25.7 7.6 61 230-292 276-336 (404)
170 PRK07807 inosine 5-monophospha 20.3 2.3E+02 0.0049 28.2 5.7 60 231-292 217-276 (479)
171 cd08362 BphC5-RrK37_N_like N-t 20.2 2.9E+02 0.0062 20.4 5.3 45 148-193 70-114 (120)
172 TIGR03569 NeuB_NnaB N-acetylne 20.1 2.1E+02 0.0046 26.9 5.3 73 95-167 10-95 (329)
No 1
>PLN02798 nitrilase
Probab=100.00 E-value=7e-41 Score=307.24 Aligned_cols=210 Identities=34% Similarity=0.512 Sum_probs=183.0
Q ss_pred CCCCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCC-CCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660 78 PPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEI-WNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (294)
Q Consensus 78 ~~~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~-~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (294)
.+.++||||++|+...+|.+.|++++++++++|+++|+|||||||+ .++||...+...+.+. ..++..+.|+++
T Consensus 6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~-----~~~~~~~~l~~~ 80 (286)
T PLN02798 6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEP-----LDGPIMQRYRSL 80 (286)
T ss_pred cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhccc-----CCCHHHHHHHHH
Confidence 3446799999999988999999999999999999999999999998 4577764433222222 234689999999
Q ss_pred HHhcCcEEEEeeeeee--eCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEE
Q 022660 157 ARLLKITIVGGSIPER--SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGI 234 (294)
Q Consensus 157 A~~~~i~Iv~Gs~~~~--~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi 234 (294)
|+++++.|++|..+++ +++++||++++++++|+++++|+|+||+++.+|....+.|..+|.+|+++.+|+++++|+|+
T Consensus 81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~ 160 (286)
T PLN02798 81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGL 160 (286)
T ss_pred HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEE
Confidence 9999999998866655 46789999999999999999999999988777876666788889999999999999999999
Q ss_pred eeeccCcCcHHHHHHH-HCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 235 GICYDIRFQELAMIYG-ARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 235 ~ICyD~~fpe~~r~la-~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+||||.+||+++|.++ ++|||+|++|++|+...+..+|..+.++||+||++|||++|.
T Consensus 161 ~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~ 219 (286)
T PLN02798 161 TVCYDLRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQ 219 (286)
T ss_pred EEEEcccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecc
Confidence 9999999999999998 999999999999887667789999999999999999999985
No 2
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=6.8e-41 Score=302.90 Aligned_cols=206 Identities=50% Similarity=0.824 Sum_probs=184.1
Q ss_pred EEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcE
Q 022660 84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (294)
Q Consensus 84 rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~ 163 (294)
|||++|+++.+|.+.|++++++++++|++.|+|||||||++++||...+...... .....++..+.|+++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~---~~~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALA---EEEGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhh---ccccCChHHHHHHHHHHHCCeE
Confidence 6999999988999999999999999999999999999999999998655433210 1112346899999999999999
Q ss_pred EEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCc
Q 022660 164 IVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR 241 (294)
Q Consensus 164 Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~ 241 (294)
|++|+++++++ +++||++++++++|+++.+|+|+||+++++|....|.|..+|.+|+.+.+|+++++|+|++||||.+
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~ 157 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLR 157 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEEEEEeccC
Confidence 99887777766 8999999999999999999999999887778776788889999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 242 fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||++++.++++|||+|++|++|+...+..+|..+.++||+||++|++++|.
T Consensus 158 ~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~ 208 (265)
T cd07572 158 FPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQ 208 (265)
T ss_pred cHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcc
Confidence 999999999999999999999887777889999999999999999999985
No 3
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.1e-40 Score=315.22 Aligned_cols=210 Identities=28% Similarity=0.449 Sum_probs=179.8
Q ss_pred CCCCCCCCCceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-----cchhhh
Q 022660 73 LPLPTPPVAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-----PVYAED 139 (294)
Q Consensus 73 ~~~~~~~~~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~-----~~~~~~ 139 (294)
.+..+.+.+.||||++|+++. +|.+.|++++.+++++|+++|+|||||||++++||..... ..+++.
T Consensus 54 ~~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~ 133 (363)
T cd07587 54 APEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAES 133 (363)
T ss_pred ChhhcCCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhc
Confidence 344455666899999998753 4899999999999999999999999999999999864221 122222
Q ss_pred hccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCc
Q 022660 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSL 216 (294)
Q Consensus 140 ~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f 216 (294)
. .+++.++.|+++|++++++|++| +.++++ +++||++++|+++|+++++|+|+||++.+ .|.|..+|
T Consensus 134 ~----~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~-----~~~E~~~f 203 (363)
T cd07587 134 A----EDGPTTKFCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVG-----DFNESTYY 203 (363)
T ss_pred c----CCChHHHHHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCC-----CccceeEE
Confidence 2 23689999999999999999987 666653 68999999999999999999999996532 56788999
Q ss_pred cCCCC-CeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 217 TAGET-PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 217 ~~G~~-~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.+|+. +.+|+++++|||++||||.+|||++|.++.+|||++++|++|+...+..+|..++++||+||++|||++|.
T Consensus 204 ~~G~~~~~vf~t~~griG~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~Nr 280 (363)
T cd07587 204 MEGNTGHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINR 280 (363)
T ss_pred ecCCCCCceEEcCCceEEEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEecc
Confidence 99985 78999999999999999999999999999999999999999876655679999999999999999999985
No 4
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=5.5e-40 Score=299.23 Aligned_cols=203 Identities=30% Similarity=0.474 Sum_probs=173.1
Q ss_pred eEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc-hhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 83 ~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~-~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
||||++|+++.+|.+.|++++.+++++|+++|+|||||||++++||...+... +.+. ......+++++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~-a~~~~~~~~~~~l~~~a~~~~ 79 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFAL-AQPVEGHPAIKRFQALAKELG 79 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhh-cCcCCCChHHHHHHHHHHHcC
Confidence 69999999988999999999999999999999999999999999997644211 1111 000112478999999999999
Q ss_pred cEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccC
Q 022660 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDI 240 (294)
Q Consensus 162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~ 240 (294)
++|++| +++++++++||++++++++|+++++|+|+||+. ...+.|..+|++|+ .+.+|+++++|+|++||||.
T Consensus 80 i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~ 153 (279)
T TIGR03381 80 VVIPVS-FFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPD-----GPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQ 153 (279)
T ss_pred cEEEEe-eeecCCCceEEeEEEECCCCCEEEEEEeeecCC-----CCCcccceeEccCCCCCceEecCCceEEEEEEcCC
Confidence 999998 677778899999999999999999999999953 12456778899998 48999999999999999999
Q ss_pred cCcHHHHHHHHCCCeEEEEcCCCCCC------CCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 241 RFQELAMIYGARGAHLICYPGAFNMT------TGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 241 ~fpe~~r~la~~Gadlil~ps~~~~~------~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+|||.+|.++++|||+|++|++|+.. ....+|..+.++||+||++|+|++|.
T Consensus 154 ~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~ 211 (279)
T TIGR03381 154 WFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANR 211 (279)
T ss_pred cChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEec
Confidence 99999999999999999999997543 23468888889999999999999985
No 5
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=9.4e-40 Score=295.43 Aligned_cols=192 Identities=24% Similarity=0.348 Sum_probs=163.8
Q ss_pred CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
|++||||++|+++. +|.+.|++++.++++++ .|+|||||||++++||...+.. +.+. .++..+.|+++|+
T Consensus 1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~---~~~~----~~~~~~~l~~~A~ 71 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAA---SSLP----QDDVVAWMTAKAQ 71 (256)
T ss_pred CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchh---hccc----cchHHHHHHHHHH
Confidence 34699999999975 89999999999999875 7999999999999999764321 1111 2368899999999
Q ss_pred hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeec
Q 022660 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICY 238 (294)
Q Consensus 159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICy 238 (294)
++++.| +|+..+++++++|||+++++++|. +..|+|+||+++ +.|..+|++|+++.+|+++++|+|++|||
T Consensus 72 ~~~~~i-~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~iG~~ICy 142 (256)
T PRK10438 72 QTNALI-AGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM-------ADEHLHYKAGNARVIVEWRGWRILPLVCY 142 (256)
T ss_pred HcCeEE-EEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEe
Confidence 999855 454555566789999999999997 579999999863 36788999999999999999999999999
Q ss_pred cCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 239 D~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|++|||++|.+ +|+|+|++|++|+.. ...+|..+.++||+||++|||++|.
T Consensus 143 D~~fPe~~r~l--~gad~i~~~s~~~~~-~~~~~~~~~~aRA~En~~~vv~~n~ 193 (256)
T PRK10438 143 DLRFPVWSRNR--NDYDLALYVANWPAP-RSLHWQTLLTARAIENQAYVAGCNR 193 (256)
T ss_pred ecCCHHHHHhh--cCCCEEEEecCCCCC-chHHHHHHHHHHHHhcCcEEEEecc
Confidence 99999999986 799999999998754 4468999999999999999999995
No 6
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1e-39 Score=293.60 Aligned_cols=196 Identities=41% Similarity=0.661 Sum_probs=174.5
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|+++. .|.+.|++++.+++++|++.|+|||||||++++||...+....+. ...++..+.++++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~-----~~~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELAD-----EDGGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhc-----ccCchHHHHHHHHHHHcCc
Confidence 6999999987 899999999999999999999999999999999997655332211 1235799999999999999
Q ss_pred EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (294)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f 242 (294)
++++|+.++++++++||++++++++|+++.+|+|+||+++ +.|..+|.+|+++.+|+++++|+|++||||.+|
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~-------~~e~~~~~~G~~~~v~~~~~~rig~~IC~D~~~ 148 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL-------MGEDKYLTAGDELEVFELDGGKVGLFICYDLRF 148 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC-------cCchhhccCCCCceEEEeCCeEEEEEEEecccc
Confidence 9999976677778999999999999999999999999874 257788999999999999999999999999999
Q ss_pred cHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 243 QELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 243 pe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||+.|.++++|||+|++|++|+.. ...+|..+.++||+||++|++++|.
T Consensus 149 pe~~r~~~~~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~ 197 (253)
T cd07583 149 PELFRKLALEGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNR 197 (253)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcC
Confidence 999999999999999999997653 4578888889999999999999985
No 7
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=3.4e-39 Score=295.71 Aligned_cols=205 Identities=31% Similarity=0.411 Sum_probs=173.3
Q ss_pred CceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHH
Q 022660 81 AKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTA 151 (294)
Q Consensus 81 ~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~ 151 (294)
++||||++|+++. ++.+.|++++.+++++|++.|+|||||||++++||...+.. ...+.. ....++++.+
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFA-EEIPNGPTTK 80 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhc-ccCCCChHHH
Confidence 4689999999865 78899999999999999999999999999999998643311 111110 0011357899
Q ss_pred HHHHHHHhcCcEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCC
Q 022660 152 MLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDV 229 (294)
Q Consensus 152 ~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~ 229 (294)
.|+++|++++++|++| +.+++ ++++||++++|+++|+++++|+|+||++++ .+.|..+|.+|+ ...+|++++
T Consensus 81 ~l~~~a~~~~i~ii~g-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~-----~~~e~~~f~~G~~~~~~f~~~~ 154 (287)
T cd07568 81 RFAALAKEYNMVLILP-IYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVG-----GFWEKFYFRPGNLGYPVFDTAF 154 (287)
T ss_pred HHHHHHHHCCEEEEEE-eEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCC-----ccceeeeecCCCCCCceEEcCC
Confidence 9999999999999998 45554 578999999999999999999999997653 466788899998 589999999
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+|+|++||||.+||+++|.++++|||+|++|++++......+|..+.++||+||++|++.+|.
T Consensus 155 ~~iG~~ICyD~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~ 217 (287)
T cd07568 155 GKIGVYICYDRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINR 217 (287)
T ss_pred ceEEEEEEecccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEecc
Confidence 999999999999999999999999999999999875545568888889999999999999984
No 8
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=3.1e-39 Score=308.67 Aligned_cols=202 Identities=30% Similarity=0.484 Sum_probs=176.2
Q ss_pred CCceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCC----CccchhhhhccCCCCc
Q 022660 80 VAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD----SFPVYAEDIDAGGDAS 147 (294)
Q Consensus 80 ~~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~----~~~~~~~~~~~~~~~~ 147 (294)
.++||||++|.++. .+.+.|++++.+++++|++.|+|||||||++++||... .+.+.++.+ ++
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~-----~g 158 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-----DG 158 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhC-----CC
Confidence 56799999999963 58999999999999999999999999999999998642 122333332 35
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeee---CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-Ce
Q 022660 148 PSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PT 223 (294)
Q Consensus 148 ~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~ 223 (294)
+..+.++++|++++++|++| +.+++ ++++|||+++|+++|+++++|+|+||++++ .|.|..+|.+|+. ..
T Consensus 159 ~~~~~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g-----~~~E~~~f~~G~~g~~ 232 (405)
T PLN00202 159 ESTKFLQELARKYNMVIVSP-ILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVG-----DFNESTYYMEGNTGHP 232 (405)
T ss_pred HHHHHHHHHHHHCCeEEEEE-eeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCC-----CccccceeecCCCCce
Confidence 78999999999999999998 66654 357999999999999999999999998754 4678889999986 68
Q ss_pred EEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 224 IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 224 v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+|++++||||++||||.+|||++|.++.+|||+|++|++|+...+..+|..++++||+||++||+++|.
T Consensus 233 vf~t~~gkiGv~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNr 301 (405)
T PLN00202 233 VFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINR 301 (405)
T ss_pred EEEeCCCeEEEEEccccccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEecc
Confidence 999999999999999999999999999999999999999876656679999999999999999999995
No 9
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-39 Score=297.55 Aligned_cols=190 Identities=34% Similarity=0.563 Sum_probs=165.3
Q ss_pred EEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcE
Q 022660 84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (294)
Q Consensus 84 rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~ 163 (294)
|||++|+++..|.+.|++++.+++++|++.|+|||||||++++||.... ..++. ..++.++.|+++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~--~~~~~-----~~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA--SEAES-----DTGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH--Hhccc-----CCCHHHHHHHHHHHHcCeE
Confidence 6999999987799999999999999999999999999999999986431 11111 2357899999999999999
Q ss_pred EEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcCc
Q 022660 164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ 243 (294)
Q Consensus 164 Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~fp 243 (294)
|++| .++++++++||++++++++| ++.+|+|+||++ .|..+|.+|+++.+|+++++|+|++||||++||
T Consensus 74 iv~G-~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~---------~E~~~f~~G~~~~v~~~~~~kiG~~ICyD~~fP 142 (279)
T cd07579 74 LVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE---------PERSWATPGDTWPVYDLPLGRVGLLIGHDALFP 142 (279)
T ss_pred EEEe-ceEccCCcEEEEEEEEeCCe-eEEEEecccCCC---------cchhhccCCCCCeeEEcCceeEEEEEeccccCc
Confidence 9999 56777789999999999999 679999999965 467789999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCC-----------------CCC--HHHHHHHHHHHHHHhCCeeEeecc
Q 022660 244 ELAMIYGARGAHLICYPGAFNM-----------------TTG--PLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 244 e~~r~la~~Gadlil~ps~~~~-----------------~~~--~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|++|.++++|||+|++|++|.. ..+ ..+|. +.++||+||++|||+||.
T Consensus 143 e~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~ 209 (279)
T cd07579 143 EAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANV 209 (279)
T ss_pred HHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeec
Confidence 9999999999999999998742 111 25787 579999999999999994
No 10
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=3.4e-39 Score=297.56 Aligned_cols=199 Identities=30% Similarity=0.352 Sum_probs=166.9
Q ss_pred eEEEEEeccc-cccH-------HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc--hhhhhc-----------
Q 022660 83 FKVGLCQLSV-TADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV--YAEDID----------- 141 (294)
Q Consensus 83 ~rValvQ~~v-~~d~-------~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~--~~~~~~----------- 141 (294)
+|+|++|..+ +.|. +.|++++++++++|++.|+|||||||++++||...++.. +++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 4789999985 3444 899999999999999999999999999999998655321 111110
Q ss_pred -cCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-----------C-CeeEEEEEEEccCCcEEEEEeecccCCCCCCCcc
Q 022660 142 -AGGDASPSTAMLSEVARLLKITIVGGSIPERS-----------G-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKI 208 (294)
Q Consensus 142 -~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----------~-~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~ 208 (294)
.....+++++.|+++|++++++|++| +.++. + +++||++++|+++|+++++|||+|||
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-------- 151 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-------- 151 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc--------
Confidence 01123578999999999999999998 45542 2 36999999999999999999999995
Q ss_pred ccccccCccCCC-CCeEEEeCCc-eEEEeeeccCcCcHHHHHHHHC-CCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCC
Q 022660 209 TFIESKSLTAGE-TPTIVDTDVG-RIGIGICYDIRFQELAMIYGAR-GAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285 (294)
Q Consensus 209 ~f~E~~~f~~G~-~~~v~~~~~g-rigi~ICyD~~fpe~~r~la~~-Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~ 285 (294)
.|..+|.+|+ ++.+|++++| |||++||||++|||++|.++++ |||+|++|++|+...+..+|..+.++||+||++
T Consensus 152 --~E~~~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~ 229 (299)
T cd07567 152 --GEPGFDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGV 229 (299)
T ss_pred --ccccccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCc
Confidence 3666788986 5899999986 9999999999999999999999 999999999987654557999999999999999
Q ss_pred eeEeecc
Q 022660 286 LPHSPFV 292 (294)
Q Consensus 286 ~vv~an~ 292 (294)
||+.+|.
T Consensus 230 ~vi~~N~ 236 (299)
T cd07567 230 NLLAANY 236 (299)
T ss_pred eEEEecC
Confidence 9999996
No 11
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.3e-38 Score=286.19 Aligned_cols=195 Identities=31% Similarity=0.458 Sum_probs=171.1
Q ss_pred EEEEEeccc-cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v-~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|+++ .+|.+.|++++.+++++|+++|+|||||||++++||...+..... . ....++..+.++++|+++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~-~---~~~~~~~~~~l~~~a~~~~~ 76 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARL-A---EPADGPALQALRAIARRHGI 76 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhh-h---cccCChHHHHHHHHHHHcCC
Confidence 699999998 489999999999999999999999999999999999865432111 0 11235789999999999999
Q ss_pred EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (294)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f 242 (294)
++++| ++++.++++||++++++++|+++.+|+|+||+++ .|..+|.+|+++.+|+++++|+|++||||++|
T Consensus 77 ~ii~G-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--------~E~~~~~~G~~~~v~~~~~~kig~~IC~D~~f 147 (254)
T cd07576 77 AIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD--------SERAAFTPGDRFPVVELRGLRVGLLICYDVEF 147 (254)
T ss_pred EEEEe-ccccCCCceEEEEEEECCCCCEeeEEEeeccCCc--------chhhhccCCCCceEEEECCeEEEEEEeecCCC
Confidence 99999 7777888999999999999999999999999752 46778999999999999999999999999999
Q ss_pred cHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 243 QELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 243 pe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||+++.++++|||+|++|++++...+ .+|..+.++||+||++|+|++|.
T Consensus 148 pe~~~~~~~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~ 196 (254)
T cd07576 148 PELVRALALAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANR 196 (254)
T ss_pred CHHHHHHHHCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcc
Confidence 99999999999999999998654433 56788889999999999999985
No 12
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1e-38 Score=294.44 Aligned_cols=200 Identities=29% Similarity=0.377 Sum_probs=169.9
Q ss_pred eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc--------chhhhhc-cCCCCcHHHHH
Q 022660 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP--------VYAEDID-AGGDASPSTAM 152 (294)
Q Consensus 83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~--------~~~~~~~-~~~~~~~~~~~ 152 (294)
||||++|+++. +|.+.|++++++++++|+++|+|||||||++++||...++. .+....+ +...++++++.
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER 80 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence 69999999864 89999999999999999999999999999999999764321 1111111 11124578999
Q ss_pred HHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC--CCeEEEeCCc
Q 022660 153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVG 230 (294)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~--~~~v~~~~~g 230 (294)
|+++|++++++|++| .++++++++||++++|+++|+++++|+|+||+. .|..+|.+|+ ++.+|+++++
T Consensus 81 l~~~a~~~~i~iv~G-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~---------~E~~~~~~g~~~~~~v~~~~~~ 150 (297)
T cd07564 81 LAEAARENGIYVVLG-VSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH---------AERLVWGQGDGSGLRVVDTPIG 150 (297)
T ss_pred HHHHHHHcCcEEEEe-eEeccCCceEEEEEEEcCCCCEeeeeeccCCCc---------hhhhhcccCCCCCceEEecCCc
Confidence 999999999999999 567777899999999999999999999999843 5777888876 5789999999
Q ss_pred eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC--CCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 231 RIGIGICYDIRFQELAMIYGARGAHLICYPGA--FNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 231 rigi~ICyD~~fpe~~r~la~~Gadlil~ps~--~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|||++||||++|||++|.++++|||+++++++ |....+..+|..+.++||+||++|||++|.
T Consensus 151 kig~~ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~ 214 (297)
T cd07564 151 RLGALICWENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQ 214 (297)
T ss_pred eEEEEEEhhcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEccc
Confidence 99999999999999999999999999999766 333456789999999999999999999984
No 13
>PLN02504 nitrilase
Probab=100.00 E-value=2.9e-38 Score=297.06 Aligned_cols=202 Identities=28% Similarity=0.418 Sum_probs=172.4
Q ss_pred CCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC-cc------------chhhhh-cc
Q 022660 78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FP------------VYAEDI-DA 142 (294)
Q Consensus 78 ~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~-~~------------~~~~~~-~~ 142 (294)
+.+++||||++|+++. .|.+.|++++++++++|++.|+|||||||++++||+... +. .+.... .+
T Consensus 20 ~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (346)
T PLN02504 20 ASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASA 99 (346)
T ss_pred ccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhc
Confidence 3556899999999975 899999999999999999999999999999999997521 11 111111 11
Q ss_pred CCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC--
Q 022660 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-- 220 (294)
Q Consensus 143 ~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-- 220 (294)
...+++.++.|+++|++++++|++| ..+++++++||++++|+++|+++.+|+|+|+++ .|..+|.+|.
T Consensus 100 ~~~~g~~i~~l~~~A~~~~i~iv~G-~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~---------~E~~~f~~G~g~ 169 (346)
T PLN02504 100 IDVPGPEVDRLAAMAGKYKVYLVMG-VIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA---------LERLIWGFGDGS 169 (346)
T ss_pred ccCCCHHHHHHHHHHHHcCCEEEEe-eeecCCCceEEEEEEECCCCCEEeEEeeccCCc---------ccceeeecCCCC
Confidence 1234688999999999999999999 567778899999999999999999999999853 5777788876
Q ss_pred CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeeccc
Q 022660 221 TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVF 293 (294)
Q Consensus 221 ~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~~ 293 (294)
.+.+|+++++|||++||||.+|||++|.++.+|||++++|+++. ..+|+.+.++||+||++|||++|..
T Consensus 170 ~~~vf~~~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~v 238 (346)
T PLN02504 170 TIPVYDTPIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQF 238 (346)
T ss_pred CCceEEcCCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEeccc
Confidence 58899999999999999999999999999999999999999863 3689999999999999999999973
No 14
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=4.5e-38 Score=289.83 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=173.9
Q ss_pred CCCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHH
Q 022660 79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVA 157 (294)
Q Consensus 79 ~~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA 157 (294)
+..++|||++|+.+.+|.+.|++++.+++++|++.|+|||||||++++||...... ...+. ......++.++.++++|
T Consensus 3 ~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 3 MGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQR-AKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhh-cccCCCChHHHHHHHHH
Confidence 34579999999998899999999999999999999999999999999998754211 11110 00111236889999999
Q ss_pred HhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEee
Q 022660 158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGI 236 (294)
Q Consensus 158 ~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~I 236 (294)
++++++|++| +++++++++||++++++++|+++++|+|+||+. ...+.|..+|.+|+ .+.+|+++++|+|++|
T Consensus 82 ~~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~e~~~~~~G~~~~~~~~~~~~rig~~I 155 (296)
T PLN02747 82 KELGVVIPVS-FFEEANNAHYNSIAIIDADGTDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFDTKFAKIGVAI 155 (296)
T ss_pred HHcCeEEEee-eeecCCCceEEEEEEECCCCCCcceEEEEecCC-----CCCccceeeecCCCCCCeeEEcCCccEEEEE
Confidence 9999999998 567778899999999999999999999999943 12345777899997 4899999999999999
Q ss_pred eccCcCcHHHHHHHHCCCeEEEEcCCCCCC------CCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 237 CYDIRFQELAMIYGARGAHLICYPGAFNMT------TGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 237 CyD~~fpe~~r~la~~Gadlil~ps~~~~~------~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|||.+||+++|.++++|||+|++|++|+.. ....+|..+.++||+||++||+.+|.
T Consensus 156 C~D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~ 217 (296)
T PLN02747 156 CWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNR 217 (296)
T ss_pred EccccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEec
Confidence 999999999999999999999999997532 13468999999999999999999985
No 15
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=5.2e-38 Score=286.17 Aligned_cols=201 Identities=36% Similarity=0.631 Sum_probs=175.0
Q ss_pred ceEEEEEeccc-cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhc
Q 022660 82 KFKVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL 160 (294)
Q Consensus 82 ~~rValvQ~~v-~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~ 160 (294)
.||||++|+.+ ..|.+.|++++.+++++|++.|||||||||++++||.+.+ ....+... ....++..+.+.++++++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~-~~~~~~~~-~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED-DLFLEEAA-AEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc-HHHHHhhh-hccCChHHHHHHHHHHhC
Confidence 58999999997 5999999999999999999999999999999999999875 11111111 112357999999999988
Q ss_pred CcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCC-eEEEeCCceEEEeeecc
Q 022660 161 KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYD 239 (294)
Q Consensus 161 ~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~-~v~~~~~grigi~ICyD 239 (294)
++++++|+.+++. ..||++++++++|+++++|+|+||++. .+.|..+|.+|+.. .+|+++++|+|++||||
T Consensus 80 ~~~ivg~~~~~~~--~~~~~~~~i~~~G~ii~~y~K~hl~~~------~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D 151 (274)
T COG0388 80 GVIIVGGPLPERE--KLYNNAALIDPDGEILGKYRKLHLFDA------FYEERRFFTPGDEGVVVFETDGGKIGLLICYD 151 (274)
T ss_pred CeEEEEeeeeccc--cceeeEEEEcCCCcEEeEEeeecCCCC------ccchhhhccCCCccceeEEeCCceEEEEEEee
Confidence 8888888665544 899999999999999999999999762 35688999999988 59999999999999999
Q ss_pred CcCcHHHHHH-HHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 240 IRFQELAMIY-GARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 240 ~~fpe~~r~l-a~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
++|||+.+.+ +.+|||+|++|++|+...+.++|..+.++||+||++||+.+|+
T Consensus 152 ~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~ 205 (274)
T COG0388 152 LRFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANR 205 (274)
T ss_pred ccCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecc
Confidence 9999988877 7889999999999998888899999999999999999999996
No 16
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.8e-38 Score=283.56 Aligned_cols=197 Identities=32% Similarity=0.527 Sum_probs=169.6
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|+.+. +|.+.|++++++++++|++.|+|||||||++++||...++........ ....++..+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELS-EPIDGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhc-cCCCCcHHHHHHHHHHHcCe
Confidence 6899999865 899999999999999999999999999999999998654322111111 11234689999999999999
Q ss_pred EEEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccC
Q 022660 163 TIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240 (294)
Q Consensus 163 ~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~ 240 (294)
+|++| .+++++ +++||++++|+++|+++..|+|+||++ .|..+|.+|+.+.+|+++++|+|++||||+
T Consensus 80 ~i~~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~g~~IC~D~ 149 (258)
T cd07584 80 YIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG---------LEKQYFREGEQYPVFDTPFGKIGVMICYDM 149 (258)
T ss_pred EEEEe-ehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc---------hhhhhccCCCCCeeEEcCCceEEEEEEcCc
Confidence 99999 455543 689999999999999999999999965 466789999999999999999999999999
Q ss_pred cCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 241 ~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+||++.|.++++|+|+|++|++|... ...+|....++||+||++||+++|.
T Consensus 150 ~fpe~~r~~~~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~ 200 (258)
T cd07584 150 GFPEVARILTLKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNR 200 (258)
T ss_pred cChHHHHHHHHCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECc
Confidence 99999999999999999999998654 4578888899999999999999884
No 17
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.4e-38 Score=282.14 Aligned_cols=197 Identities=38% Similarity=0.593 Sum_probs=171.5
Q ss_pred EEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 85 VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 85 ValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
||++|++..+|.+.|++++.+.+++|+++|+|||||||++++||..++. ......+ .+++++.|+++|+++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~i 75 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPL-----DGPFVSALARLARELGI 75 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccC-----CCHHHHHHHHHHHHcCe
Confidence 6899999889999999999999999999999999999999999976542 1222222 34789999999999999
Q ss_pred EEEEeeeeeeeC-CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC--CeEEEeCCceEEEeeecc
Q 022660 163 TIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET--PTIVDTDVGRIGIGICYD 239 (294)
Q Consensus 163 ~Iv~Gs~~~~~~-~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~--~~v~~~~~grigi~ICyD 239 (294)
++++| .+++++ +++||++++|+++|+++++|+|+||++.. .+.|..+|.+|++ +.+++++++|+|++||||
T Consensus 76 ~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~-----~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D 149 (255)
T cd07581 76 TVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAF-----GFRESDTVAPGDELPPVVFVVGGVKVGLATCYD 149 (255)
T ss_pred EEEEE-eeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCC-----CcCcccccCCCCCCCceEEecCCceEEEEEEec
Confidence 99999 556654 48999999999999999999999997531 3568889999998 788998899999999999
Q ss_pred CcCcHHHHHHHHCCCeEEEEcCCCCCCC-CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 240 IRFQELAMIYGARGAHLICYPGAFNMTT-GPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 240 ~~fpe~~r~la~~Gadlil~ps~~~~~~-~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.+||++.+.++++|||+|++|++|.... ..++|..+.++||+||++|++++|.
T Consensus 150 ~~~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~ 203 (255)
T cd07581 150 LRFPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQ 203 (255)
T ss_pred ccCHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcC
Confidence 9999999999999999999999986543 4678999999999999999999984
No 18
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.2e-38 Score=286.49 Aligned_cols=197 Identities=33% Similarity=0.486 Sum_probs=170.2
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|+++. +|.+.|++++.+++++|.+.|+|||||||++++||...+.....+.. ....+++.++.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALA-EEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhh-ccCCCCchHHHHHHHHHHcCc
Confidence 6999999976 89999999999999999999999999999999999776533221111 111234688999999999999
Q ss_pred EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCceEEEeeeccCc
Q 022660 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGICYDIR 241 (294)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~grigi~ICyD~~ 241 (294)
+|++| +++++++++||++++++++|. +.+|+|+||++ .|..+|.+|++ +.+|+++++|+|++||||++
T Consensus 80 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~---------~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~ 148 (268)
T cd07580 80 YIVAG-FAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN---------EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGW 148 (268)
T ss_pred EEEee-cccccCCceEEEEEEECCCCc-EEEEEEecCCc---------hhcceecCCCCCCceEEcCCCcEEEEEECccc
Confidence 99999 677777899999999999995 78999999965 47778999998 99999999999999999999
Q ss_pred CcHHHHHHHHCCCeEEEEcCCCCCCCCH-----HHHHHHHHHHHHHhCCeeEeecc
Q 022660 242 FQELAMIYGARGAHLICYPGAFNMTTGP-----LHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 242 fpe~~r~la~~Gadlil~ps~~~~~~~~-----~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||+++|.++.+|||+|++|++|++..+. .+|..+.++||+||++|||++|.
T Consensus 149 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~ 204 (268)
T cd07580 149 FPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADR 204 (268)
T ss_pred chHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEee
Confidence 9999999999999999999998765433 57888889999999999999985
No 19
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=7.9e-38 Score=285.91 Aligned_cols=203 Identities=30% Similarity=0.455 Sum_probs=172.3
Q ss_pred eEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 83 ~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
||||++|+++.+|.+.|++++.+++++|.+.|+|||||||++++||...+.. ...+. ......+++++.+.++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~la~~~~ 79 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDL-AEPPIPGPTTARFQALAKELG 79 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHh-ccccCCCHHHHHHHHHHHHCC
Confidence 6999999999899999999999999999999999999999999999765431 11110 000123578899999999999
Q ss_pred cEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeecc
Q 022660 162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYD 239 (294)
Q Consensus 162 i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD 239 (294)
++|++|. .+++ ++++||++++++++|+++.+|+|+||+. ...+.|..+|.+|+ ++.+|+++++|+|++||||
T Consensus 80 i~iv~g~-~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 153 (284)
T cd07573 80 VVIPVSL-FEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPD-----DPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWD 153 (284)
T ss_pred EEEEecc-eeeCCCCcEEEEEEEECCCCCEEeEEeeeccCC-----CCcccccceecCCCCCCceEecCCceEEEEEecc
Confidence 9999995 4554 4689999999999999999999999843 22456778899999 7999999999999999999
Q ss_pred CcCcHHHHHHHHCCCeEEEEcCCCCCC--------CCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 240 IRFQELAMIYGARGAHLICYPGAFNMT--------TGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 240 ~~fpe~~r~la~~Gadlil~ps~~~~~--------~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.+||+++|.++++|||+|++|+++++. ....+|..+.++||+||++|+|++|.
T Consensus 154 ~~fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 214 (284)
T cd07573 154 QWFPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNR 214 (284)
T ss_pred ccchHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEecc
Confidence 999999999999999999999997542 23468888899999999999999985
No 20
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=2e-38 Score=286.50 Aligned_cols=199 Identities=27% Similarity=0.358 Sum_probs=167.1
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|+++. +|.+.|++++.+++++|++.|+|||||||++++||...+.......... ..+.++.|++.++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~i 77 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA---AEEALEELAAATADLDI 77 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH---HHHHHHHHHHhcccCCc
Confidence 6999999975 8999999999999999999999999999999999976442211111110 11345556666666799
Q ss_pred EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (294)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f 242 (294)
++++| .++++++++||+++++ ++|+++++|+|+||.+++ .+.|..+|.+|+...+|+++++|||++||||.+|
T Consensus 78 ~ii~G-~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~f 150 (261)
T cd07570 78 AVVVG-LPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYG-----VFDEKRYFTPGDKPDVLFFKGLRIGVEICEDLWV 150 (261)
T ss_pred EEEEe-ceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCc-----cccccccCccCCCCCeEEECCEEEEEEeecccCC
Confidence 99999 5677778999999999 699999999999996653 4568889999999999999999999999999999
Q ss_pred cHH-HHHHHHCCCeEEEEcCCCCCCCC-HHHHHHHHHHHHHHhCCeeEeecc
Q 022660 243 QEL-AMIYGARGAHLICYPGAFNMTTG-PLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 243 pe~-~r~la~~Gadlil~ps~~~~~~~-~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|++ .|.++++|||+|++|++|+...+ ..+|..+.++||+||++|||++|.
T Consensus 151 pe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~ 202 (261)
T cd07570 151 PDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQ 202 (261)
T ss_pred CCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 999 99999999999999999875543 357788899999999999999996
No 21
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=1.2e-37 Score=286.80 Aligned_cols=193 Identities=23% Similarity=0.311 Sum_probs=164.7
Q ss_pred eEEEEEeccc-----cccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCcHHHHHH
Q 022660 83 FKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAML 153 (294)
Q Consensus 83 ~rValvQ~~v-----~~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l 153 (294)
++||++|+++ .+|.+.|++++.+++++|++ .|+|||||||++++||..+.. .+.++. .+++..+.|
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~-----~~~~~~~~l 75 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACT-----VPGPETDIF 75 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccC-----CCChhHHHH
Confidence 4799999997 37999999999999999986 599999999999999975321 222222 235789999
Q ss_pred HHHHHhcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeC-
Q 022660 154 SEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTD- 228 (294)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~- 228 (294)
+++|+++++++++| +.++++ +++||++++|+++|+++.+|+|+||+. | ...|.+|++ +.++++.
T Consensus 76 ~~lA~~~~i~i~~g-~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~---~-------~e~~~~G~~~~~v~~~~~ 144 (291)
T cd07565 76 AEACKEAKVWGVFS-IMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV---P-------IEPWYPGDLGTPVCEGPK 144 (291)
T ss_pred HHHHHHCCeEEEEE-eeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC---C-------cccccCCCCCceeeECCC
Confidence 99999999999988 556653 689999999999999999999999853 1 124789987 8899986
Q ss_pred CceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 229 ~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
++|||++||||++|||++|.++++|||+|++|++|+.. ...+|..+.++||+||++||+++|.
T Consensus 145 g~riG~~ICyD~~fPe~~r~la~~GAdill~ps~~~~~-~~~~w~~~~~aRA~En~~~vv~aN~ 207 (291)
T cd07565 145 GSKIALIICHDGMYPEIARECAYKGAELIIRIQGYMYP-AKDQWIITNKANAWCNLMYTASVNL 207 (291)
T ss_pred CCEEEEEEEcCCCCcHHHHHHHHCCCeEEEECCcCCCC-cchHHHHHHHHHHHhcCcEEEEecc
Confidence 56999999999999999999999999999999998754 3568999999999999999999986
No 22
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7e-38 Score=285.86 Aligned_cols=200 Identities=31% Similarity=0.473 Sum_probs=169.9
Q ss_pred eEEEEEecccc--ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCC---CCCcc---chhhhhccCCCCcHHHHHHH
Q 022660 83 FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS---HDSFP---VYAEDIDAGGDASPSTAMLS 154 (294)
Q Consensus 83 ~rValvQ~~v~--~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~---~~~~~---~~~~~~~~~~~~~~~~~~l~ 154 (294)
||||++|+++. +|.+.|++++++++++|++.|+|||||||++++||. ..+.. ....... ...+++++.|+
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 78 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALA--ALTPDYVALFS 78 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHH--HHHHHHHHHHH
Confidence 69999999974 799999999999999999999999999999998853 22211 1111111 11246889999
Q ss_pred HHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEE
Q 022660 155 EVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGI 234 (294)
Q Consensus 155 ~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi 234 (294)
++|++++++|++|++++++++++||++++++++|.+ .+|+|+||++++ .+..+|.+|+++.+|+++++|+|+
T Consensus 79 ~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e-------~~~~~~~~G~~~~v~~~~~~~ig~ 150 (280)
T cd07574 79 ELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE-------REEWGISGGDKLKVFDTDLGKIGI 150 (280)
T ss_pred HHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh-------hhcccccCCCCceEEecCCccEEE
Confidence 999999999999976677788999999999999987 999999998742 344568999999999999999999
Q ss_pred eeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 235 GICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 235 ~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+||||++||+++|.++.+|+|+|++|++++...+..+|....++||+||++|++++|.
T Consensus 151 ~IC~D~~fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~ 208 (280)
T cd07574 151 LICYDSEFPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGT 208 (280)
T ss_pred EEecccccHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCC
Confidence 9999999999999999999999999999876666678887889999999999999985
No 23
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=3e-37 Score=285.29 Aligned_cols=210 Identities=23% Similarity=0.282 Sum_probs=170.0
Q ss_pred CceEEEEEecccc-c--cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc----chhhhhccCCCCcHHHHHH
Q 022660 81 AKFKVGLCQLSVT-A--DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP----VYAEDIDAGGDASPSTAML 153 (294)
Q Consensus 81 ~~~rValvQ~~v~-~--d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~----~~~~~~~~~~~~~~~~~~l 153 (294)
++||||++|++.. . +.++|++++.+++++|++.|+|||||||++++||...... ...... .....++..+.+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 80 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFF-ETEMPNPETQPL 80 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhh-hhcCCChhHHHH
Confidence 3689999999754 3 8899999999999999999999999999999998653211 111100 111235788899
Q ss_pred HHHHHhcCcEEEEeeeeee-eCC---eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcc-ccccccCccCCC-CCeEE
Q 022660 154 SEVARLLKITIVGGSIPER-SGD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI-TFIESKSLTAGE-TPTIV 225 (294)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~-~~~---~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~-~f~E~~~f~~G~-~~~v~ 225 (294)
.++|++++++|++| ++++ .++ ++||++++|+++|+++++|+|+||++++ .|... .+.|..+|.+|+ ++.+|
T Consensus 81 ~~~a~~~~i~iv~G-~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~ 159 (302)
T cd07569 81 FDRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVF 159 (302)
T ss_pred HHHHHHhCeEEEEe-ceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceE
Confidence 99999999999999 5554 344 8999999999999999999999998765 23321 234778899999 89999
Q ss_pred EeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCC---C------CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 226 DTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMT---T------GPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 226 ~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~---~------~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+++++|||++||||.+|||++|.++.+|||+|++|+++.+. . ...+|....++||+||++||+++|.
T Consensus 160 ~~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~ 235 (302)
T cd07569 160 RVPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAK 235 (302)
T ss_pred ecCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeec
Confidence 99999999999999999999999999999999998764221 1 1246777889999999999999985
No 24
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.6e-37 Score=279.28 Aligned_cols=194 Identities=36% Similarity=0.468 Sum_probs=169.5
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|+++. +|.+.|++++++++++|++.|+|||||||++++||...+..... .....++..+.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~----~~~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSRE----AEVPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchh----cccCCChHHHHHHHHHHHcCc
Confidence 6999999975 89999999999999999999999999999999999875432211 111235789999999999999
Q ss_pred EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242 (294)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f 242 (294)
+|++| +++++++++||++++++++|. +.+|+|+||++ .|..+|.+|+++.+|+++++|+|++||||.+|
T Consensus 77 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~---------~E~~~~~~G~~~~v~~~~~~rig~~IC~D~~~ 145 (261)
T cd07585 77 TILAG-LIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR---------REHPYIAAGDEYPVFATPGVRFGILICYDNHF 145 (261)
T ss_pred EEEEe-ccccCCCceeEEEEEECCCCc-EeEEeeecCCc---------cccceEcCCCCCceEEcCCceEEEEEEcCCcC
Confidence 99999 567778899999999999997 58999999975 46778999999999999999999999999999
Q ss_pred cHHHHHHHHCCCeEEEEcCCCCCCC---CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 243 QELAMIYGARGAHLICYPGAFNMTT---GPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 243 pe~~r~la~~Gadlil~ps~~~~~~---~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||++|.++++|||+|++|++++... ....|....++||+||++|++++|.
T Consensus 146 pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~ 198 (261)
T cd07585 146 PENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNG 198 (261)
T ss_pred cHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecc
Confidence 9999999999999999999876543 3457878889999999999999984
No 25
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-38 Score=271.89 Aligned_cols=205 Identities=37% Similarity=0.575 Sum_probs=182.9
Q ss_pred eEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCC-CCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWN-SPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 83 ~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
.+||++|+....|...|++...++|++|++.||++|.|||.+- -|-....-.+.++. .++++.+.++++|++++
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~-----l~~k~m~~y~elar~~n 90 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEP-----LDGKFMEQYRELARSHN 90 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccc-----cChHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999852 11111111233333 24689999999999999
Q ss_pred cEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCceEEEeee
Q 022660 162 ITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGIC 237 (294)
Q Consensus 162 i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~grigi~IC 237 (294)
|++.+|...++.+ .+++|+-++++.+|+++..|+|.|||+.++|+.....|+....||.. ...++++.||+|..||
T Consensus 91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaIC 170 (295)
T KOG0807|consen 91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAIC 170 (295)
T ss_pred eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeee
Confidence 9998887777653 68999999999999999999999999999999999999999999988 5669999999999999
Q ss_pred ccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 238 YDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 238 yD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||++|||++..+.+.||+|+.+|++|...+|..||+.+.|+||+|++||||+|.+
T Consensus 171 YDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ 225 (295)
T KOG0807|consen 171 YDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQ 225 (295)
T ss_pred eeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhh
Confidence 9999999999999999999999999999999999999999999999999999876
No 26
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.4e-37 Score=275.57 Aligned_cols=193 Identities=33% Similarity=0.476 Sum_probs=162.8
Q ss_pred eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
+|||++|++.. +|.+.|++++.+++++|+++|+|||||||++++||...+......... ...++..+.++++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVE--PIPGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcc--cCCCHHHHHHHHHHHHcC
Confidence 58999999975 899999999999999999999999999999999998655432222111 113468899999999999
Q ss_pred cEEEEeeeeeee--CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeec
Q 022660 162 ITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICY 238 (294)
Q Consensus 162 i~Iv~Gs~~~~~--~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICy 238 (294)
+.|++| ++++. ++++||++++|+++| ++..|+|+||+. .|..+|.+|+ .+.+|+++++|+|++|||
T Consensus 79 i~ii~G-~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~---------~e~~~~~~g~~~~~v~~~~~~rig~~IC~ 147 (258)
T cd07578 79 CYIVVG-LPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI---------SEPKWAADGDLGHQVFDTEIGRIALLICM 147 (258)
T ss_pred cEEEEe-cceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc---------ccccccCCCCCCceEEECCCccEEEEEee
Confidence 999999 45554 468999999999998 789999999853 4667889998 588999999999999999
Q ss_pred cCcCcHHHHHHHHCCCeEEEEcCCCCCCCCH-HHHHHHHHHHHHHhCCeeEeecc
Q 022660 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 239 D~~fpe~~r~la~~Gadlil~ps~~~~~~~~-~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|++|||++|.++++||++|++|++|...... .+| ++||+||++|+|++|.
T Consensus 148 D~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~ 198 (258)
T cd07578 148 DIHFFETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNR 198 (258)
T ss_pred CCCchHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecc
Confidence 9999999999999999999999998654332 234 5899999999999985
No 27
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.2e-37 Score=276.36 Aligned_cols=190 Identities=33% Similarity=0.486 Sum_probs=163.0
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i 162 (294)
|||++|++.. +|.+.|++++.+++++|. +|||||||++++||.........+... ...++++++.|+++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAE-SIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhc-ccCCChHHHHHHHHHHHhCc
Confidence 6899999975 899999999999998873 999999999999998643222111111 11135789999999999999
Q ss_pred EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccCc
Q 022660 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDIR 241 (294)
Q Consensus 163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~~ 241 (294)
+|++| .++++++++||++++++++| ++.+|+|+||++ .|..+|.+|+ .+.+|+++++|+|++||||.+
T Consensus 77 ~ii~G-~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~ 145 (259)
T cd07577 77 YIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY---------EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWY 145 (259)
T ss_pred EEEec-ceeccCCceEEEEEEECCCc-cEeeEeeccCCh---------hhhccccCCCCCCceEEeCCcEEEEEEEcCcc
Confidence 99999 66777889999999999999 899999999964 5677899999 799999999999999999999
Q ss_pred CcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 242 fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|||++|.++++|||+|++|++|.. ..|..+.++||+||++|+|++|.
T Consensus 146 fpe~~r~~~~~Gadli~~ps~~~~----~~~~~~~~~rA~en~~~vv~~n~ 192 (259)
T cd07577 146 FPEAARTLALKGADIIAHPANLVL----PYCPKAMPIRALENRVFTITANR 192 (259)
T ss_pred cchHHHHHHHcCCCEEEECCccCC----chhhhhhhHhhhhcCceEEEEec
Confidence 999999999999999999999752 25777789999999999999985
No 28
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=2.1e-36 Score=272.57 Aligned_cols=191 Identities=28% Similarity=0.422 Sum_probs=166.2
Q ss_pred eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
||||++|+++. +|++.|++++++++++|++ |+|||||||++++||...+. ..++. ..++.++.++++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-~~~~~-----~~~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-ALAEP-----MNGPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-Hhhcc-----cCChHHHHHHHHHHHCC
Confidence 69999999986 8999999999999999987 99999999999999976432 12222 23578999999999999
Q ss_pred cEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCc
Q 022660 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR 241 (294)
Q Consensus 162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~ 241 (294)
+.|++| +++++++++||++++++++|++. .|+|+||+++ +.|..+|.+|++..+|+++++|+|++||||.+
T Consensus 74 i~i~~~-~~~~~~~~~yNs~~~i~~~G~i~-~y~K~~l~~~-------~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~ 144 (252)
T cd07575 74 AAITGS-LIIKEGGKYYNRLYFVTPDGEVY-HYDKRHLFRM-------AGEHKVYTAGNERVIVEYKGWKILLQVCYDLR 144 (252)
T ss_pred eEEEEE-EEEccCCceEEEEEEECCCCCEE-EEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEeccC
Confidence 988876 67777889999999999999864 9999999764 26778899999999999999999999999999
Q ss_pred CcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 242 fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|||++|.++. ||+|++|++|+.. ...+|..+.++||+||++||+.+|.
T Consensus 145 ~pe~~r~~~~--a~lil~~s~~~~~-~~~~~~~~~~arA~en~~~vv~~n~ 192 (252)
T cd07575 145 FPVWSRNTND--YDLLLYVANWPAP-RRAAWDTLLKARAIENQAYVIGVNR 192 (252)
T ss_pred ChHHHHhhcC--CCEEEEeCCCCCC-chHHHHHHhHHHHhhccceEEEecc
Confidence 9999998753 9999999998654 4578988889999999999999985
No 29
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=3.7e-36 Score=269.08 Aligned_cols=196 Identities=43% Similarity=0.644 Sum_probs=172.0
Q ss_pred EEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcE
Q 022660 85 VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (294)
Q Consensus 85 ValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~ 163 (294)
||++|+++. +|.++|++++.+.+++|.++|+|||||||++++||...+........ ....+...+.++++|+++++.
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLA--EELDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhc--ccCCchHHHHHHHHHHHhCeE
Confidence 689999987 99999999999999999999999999999999999876533211000 112346899999999999999
Q ss_pred EEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcCc
Q 022660 164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ 243 (294)
Q Consensus 164 Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~fp 243 (294)
+++|+ ++++++++||++++++++|+++.+|+|+||++ |.|..+|.+|+...+|+++++|+|++||||.+||
T Consensus 79 ii~G~-~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~--------~~E~~~~~~g~~~~~f~~~~~~ig~~IC~d~~~~ 149 (253)
T cd07197 79 IVAGI-AEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD--------FGERRYFSPGDEFPVFDTPGGKIGLLICYDLRFP 149 (253)
T ss_pred EEeee-EEccCCceEEEEEEECCCCeEEEEEEEeecCC--------CcccceecCCCCCceEEcCCceEEEEEEecCCCc
Confidence 99995 57777899999999999999999999999976 3677789999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 244 ELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 244 e~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+..+.+.++|+|+|++|+++.+.. ..+|..+.+.||+||++|++++|.
T Consensus 150 ~~~~~~~~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~ 197 (253)
T cd07197 150 ELARELALKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANR 197 (253)
T ss_pred HHHHHHHHCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecC
Confidence 999999999999999999976553 678999999999999999999995
No 30
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=1.6e-36 Score=276.41 Aligned_cols=195 Identities=21% Similarity=0.282 Sum_probs=167.4
Q ss_pred eEEEEEecccc-c------cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHH
Q 022660 83 FKVGLCQLSVT-A------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE 155 (294)
Q Consensus 83 ~rValvQ~~v~-~------d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (294)
+|||++|+++. . |.+.|++++.+++++|+++|+|||||||++++||... .++.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~--------------~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR--------------DPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc--------------CHHHHHHHHH
Confidence 58999999975 3 7899999999999999999999999999999998521 2468999999
Q ss_pred HHHhcCcEEEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCC--CCcccc--------ccccCccCCCCCe
Q 022660 156 VARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDI--PGKITF--------IESKSLTAGETPT 223 (294)
Q Consensus 156 lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~--P~~~~f--------~E~~~f~~G~~~~ 223 (294)
+|+++++++++|. .++++ +++||++++++++|+++.+|+|+||++++. |....+ .|..+|.+|++..
T Consensus 67 ~ak~~~i~ii~G~-~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~ 145 (270)
T cd07571 67 AARAVGAPLLTGA-PRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQ 145 (270)
T ss_pred HHHhcCCeEEEee-eeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCC
Confidence 9999999999994 45544 589999999999999999999999988652 322111 3677899999999
Q ss_pred EEEeCC-ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 224 IVDTDV-GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 224 v~~~~~-grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+|++++ +|+|++||||.+|||.+|.++++|||+|++|+++. ......+|..++++||+||++|||++|.
T Consensus 146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~ 218 (270)
T cd07571 146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAAN 218 (270)
T ss_pred ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcC
Confidence 999999 99999999999999999999999999999999832 2335667788889999999999999985
No 31
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.9e-36 Score=271.49 Aligned_cols=195 Identities=28% Similarity=0.409 Sum_probs=163.7
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
|||++|++.. +|.+.|++++++++++|+++|+|||||||++++||...+.. ..+.. ..++.++.|+++++ +
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~--~ 73 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMH-----ADDPRLQALAEASG--G 73 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcc-----cchHHHHHHHHHcC--C
Confidence 6999999976 89999999999999999999999999999999999875421 11111 12356666666653 7
Q ss_pred cEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccC
Q 022660 162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240 (294)
Q Consensus 162 i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~ 240 (294)
+.+++|+ +++. ++++||+++++ ++|+++++|+|+|| |.+..|.|..+|.+|+++.+|+++++|||++||||.
T Consensus 74 ~~ii~G~-~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~l-----p~~~~~~e~~~~~~G~~~~vf~~~~~~ig~~IC~D~ 146 (269)
T cd07586 74 ICVVFGF-VEEGRDGRFYNSAAYL-EDGRVVHVHRKVYL-----PTYGLFEEGRYFAPGSHLRAFDTRFGRAGVLICEDA 146 (269)
T ss_pred CEEEEeC-eEEcCCCcEEEEEEEe-cCCEEEEEEEeEeC-----CCCCccceeeeecCCCcceEEEeCCeEEEEEEEecc
Confidence 9999995 4554 58999999999 89999999999998 333345677889999999999999999999999999
Q ss_pred cCcHHHHHHHHCCCeEEEEcCCCCCCC------CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 241 RFQELAMIYGARGAHLICYPGAFNMTT------GPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 241 ~fpe~~r~la~~Gadlil~ps~~~~~~------~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+||++.+.++++|||+|++|+++++.. ...+|..+.++||+||++|||+||.
T Consensus 147 ~fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 204 (269)
T cd07586 147 WHPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANR 204 (269)
T ss_pred CCcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEee
Confidence 999999999999999999999975531 1357888999999999999999995
No 32
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.2e-35 Score=273.62 Aligned_cols=207 Identities=23% Similarity=0.263 Sum_probs=164.5
Q ss_pred EEEEEecccc-----ccHHHHHHHHHHHHHHHHH-----CCCcEEEcCCCCCCCCCCCCccchhhhhc-cCCCCcHHHHH
Q 022660 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE-----KGAKLILLPEIWNSPYSHDSFPVYAEDID-AGGDASPSTAM 152 (294)
Q Consensus 84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~-----~gadLVVfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (294)
.++.+|+.+. +|++.|++++.+++++|++ .|+|||||||++++||...+........+ +...+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~ 81 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA 81 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence 5678898753 7999999999999999987 47999999999999998754321110000 11124689999
Q ss_pred HHHHHHhcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCC---CCCcccccc-ccCccCC-C-CCe
Q 022660 153 LSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDID---IPGKITFIE-SKSLTAG-E-TPT 223 (294)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~---~P~~~~f~E-~~~f~~G-~-~~~ 223 (294)
|+++|++++++|++|+. ++++ +++||++++++++|+++++|+|+||+..+ .|.. .+.| ..++.+| + .+.
T Consensus 82 l~~~A~~~~i~iv~G~~-e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~-~~~~~~~~~g~g~~~~~~ 159 (294)
T cd07582 82 LGEKAKELNVYIAANAY-ERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHD-VWDEYIEVYGYGLDALFP 159 (294)
T ss_pred HHHHHHHcCEEEEEeee-eecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccc-hhhhhcccCCCcccccce
Confidence 99999999999999954 5543 68999999999999999999999997521 1211 1122 1234555 3 368
Q ss_pred EEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 224 IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 224 v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+++++++|||++||||.+|||++|.++++|||+|++|++|+......+|+.+.++||+||++|||++|.
T Consensus 160 v~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~ 228 (294)
T cd07582 160 VADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANS 228 (294)
T ss_pred eecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecc
Confidence 999999999999999999999999999999999999999876555578988899999999999999985
No 33
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=8.4e-36 Score=279.92 Aligned_cols=199 Identities=21% Similarity=0.210 Sum_probs=165.6
Q ss_pred CCCCceEEEEEecccc-----ccHHHHHHHHHHHHHHHH--HCCCcEEEcCCCCCCCCCCCC--ccchhhhhccCCCCcH
Q 022660 78 PPVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAA--EKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASP 148 (294)
Q Consensus 78 ~~~~~~rValvQ~~v~-----~d~~~n~~~i~~~i~~A~--~~gadLVVfPE~~l~gy~~~~--~~~~~~~~~~~~~~~~ 148 (294)
.+.+.++||++|.+++ .|...|++++.+.+++|+ ..|+|||||||++++||.++. +.+.+.. .+++
T Consensus 8 ~~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~-----i~g~ 82 (345)
T PRK13286 8 SSNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETAST-----IPGE 82 (345)
T ss_pred CCCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhccc-----CCCH
Confidence 4556799999999843 688999999999999987 458999999999999976543 2222222 2457
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeee----eCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeE
Q 022660 149 STAMLSEVARLLKITIVGGSIPER----SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTI 224 (294)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~----~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v 224 (294)
..+.|+++|+++++++++|...++ .++++||++++|+++|+++.+|+|+|++. +...|.+|+...+
T Consensus 83 ~~~~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~----------~~e~~~pG~~~~v 152 (345)
T PRK13286 83 ETAIFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC----------PIEGWYPGDCTYV 152 (345)
T ss_pred HHHHHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc----------hhhceecCCCCEE
Confidence 899999999999999887633233 23569999999999999999999999854 2235789999999
Q ss_pred EEeCCc-eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 225 VDTDVG-RIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 225 ~~~~~g-rigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
++++.| |||++||||.+|||++|.++++|||+|++|++|... ..++|..++++||+||++|||.+|.
T Consensus 153 ~~~~~G~kiG~lIC~D~~fPE~~R~la~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~ 220 (345)
T PRK13286 153 SEGPKGLKISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANA 220 (345)
T ss_pred EeCCCCcEEEEEEEecccChHHHHHHHHcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEec
Confidence 999755 999999999999999999999999999999997653 5679999999999999999999996
No 34
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=6.2e-36 Score=275.73 Aligned_cols=205 Identities=22% Similarity=0.268 Sum_probs=156.3
Q ss_pred EEEEEecccc-ccHHHHHHHHHHHHHHHHH----CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAE----KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~----~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
|||++|+++. +|++.|++++++++++|++ .|+|||||||++++||...+......... ...+++..+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae-~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLE-PTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHH-hcCCCHHHHHHHHHHH
Confidence 6999999976 8999999999999999988 89999999999999998654322111111 1123578899999999
Q ss_pred hcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccc-cCcc------CCCCCeE--EE
Q 022660 159 LLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIES-KSLT------AGETPTI--VD 226 (294)
Q Consensus 159 ~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~-~~f~------~G~~~~v--~~ 226 (294)
+++++|++| .+++.+ +++|||+++|+++|+++++|+|+||++.+.++. +.|. .++. +|++... +.
T Consensus 80 ~~~i~Iv~G-~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~--~~e~~~~~~~~~~~~~G~~~~~~~~~ 156 (295)
T cd07566 80 KFNCHVVIG-YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWG--CEENPGGFQTFPLPFAKDDDFDGGSV 156 (295)
T ss_pred hcCCEEEEe-eeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccc--cCCCCCcccccccccccccccccccc
Confidence 999999999 456543 489999999999999999999999987642210 1121 1222 7776443 33
Q ss_pred eCCceEEEeeeccCc---C--c----HHHHHHHHCCCeEEEEcCCCCCCCCH--------HHH---HHHHHHHH------
Q 022660 227 TDVGRIGIGICYDIR---F--Q----ELAMIYGARGAHLICYPGAFNMTTGP--------LHW---ELLQRARA------ 280 (294)
Q Consensus 227 ~~~grigi~ICyD~~---f--p----e~~r~la~~Gadlil~ps~~~~~~~~--------~~~---~~l~~~RA------ 280 (294)
+.++|||++||||++ | | |++|.++.+|||||++|++|+...++ .+| ..+.++||
T Consensus 157 ~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~ 236 (295)
T cd07566 157 DVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAE 236 (295)
T ss_pred CCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccC
Confidence 457899999999996 7 5 99999999999999999999754331 123 23345555
Q ss_pred HHhCCeeEeecc
Q 022660 281 TDNQVLPHSPFV 292 (294)
Q Consensus 281 iEn~~~vv~an~ 292 (294)
+||++|||++|.
T Consensus 237 ~eN~~~vv~~Nr 248 (295)
T cd07566 237 PLEGTQVVFCNR 248 (295)
T ss_pred CCCceEEEEEec
Confidence 499999999995
No 35
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=3.2e-35 Score=275.16 Aligned_cols=198 Identities=23% Similarity=0.350 Sum_probs=167.1
Q ss_pred CCCCceEEEEEecccc-----ccHHHHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCcc--chhhhhccCCCCcH
Q 022660 78 PPVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFP--VYAEDIDAGGDASP 148 (294)
Q Consensus 78 ~~~~~~rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~~--gadLVVfPE~~l~gy~~~~~~--~~~~~~~~~~~~~~ 148 (294)
.+.++|+||++|++++ +|.+.|++++.+++++|++. |+|||||||++++||..+.+. +.+.. .+++
T Consensus 9 ~~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~-----~~g~ 83 (333)
T PRK13287 9 KPIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCT-----VDGP 83 (333)
T ss_pred CCCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhccc-----CCCH
Confidence 5667899999999963 78999999999999999864 899999999999999876432 22211 2457
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeee-CC-eeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEE
Q 022660 149 STAMLSEVARLLKITIVGGSIPERS-GD-RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIV 225 (294)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~-~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~ 225 (294)
.++.|+++|+++++++++| +.++. ++ ++|||+++++++|+++.+|+|+||+. | ...|.+|+ ..++|
T Consensus 84 ~~~~l~~~a~~~~i~~~~g-~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~---p-------~~~~~pG~~~~~v~ 152 (333)
T PRK13287 84 EVDAFAQACKENKVWGVFS-IMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV---P-------VEPWEPGDLGIPVC 152 (333)
T ss_pred HHHHHHHHHHHcCeEEEEe-eEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC---c-------cccccCCCCCCceE
Confidence 9999999999999999987 44554 33 49999999999999999999999843 2 12478998 58899
Q ss_pred EeCC-ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 226 DTDV-GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 226 ~~~~-grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+++. .|+|++||||.+|||++|.++++|||+|++|++|+.. ..++|....++||+||++|+++||.
T Consensus 153 ~~~~g~kiG~~ICyD~~fPe~~R~~a~~GAeill~~s~~~~~-~~~~w~~~~~arA~en~~~vv~an~ 219 (333)
T PRK13287 153 DGPGGSKLAVCICHDGMFPEMAREAAYKGANVMIRISGYSTQ-VREQWILTNRSNAWQNLMYTASVNL 219 (333)
T ss_pred ECCCCceEEEEEEecccchHHHHHHHHCCCeEEEECCccCCc-chhHHHHHHHHHHHhCCcEEEEEec
Confidence 9874 5999999999999999999999999999999998654 4578988899999999999999985
No 36
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=273.34 Aligned_cols=218 Identities=44% Similarity=0.643 Sum_probs=202.8
Q ss_pred CCCCCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCC-CCccchhhhhccCCCCcHHHHH
Q 022660 75 LPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-DSFPVYAEDIDAGGDASPSTAM 152 (294)
Q Consensus 75 ~~~~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
.+.+...++++|++|.... .+...|+..++..+++|++.|++||||||.++.||.. +.+..+.+.+......++..+.
T Consensus 6 ~~~~~~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ 85 (298)
T KOG0806|consen 6 EHAVILPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQG 85 (298)
T ss_pred ccCCcccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHH
Confidence 3445666789999999987 6999999999999999999999999999999999999 8888899888765456799999
Q ss_pred HHHHHHhcCcEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCce
Q 022660 153 LSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGR 231 (294)
Q Consensus 153 l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~gr 231 (294)
++++|+++++++++|++++.. +++.||++.+++++|+.+..|||.|||+.+.|+...|.|...|.+|..+.+++++.||
T Consensus 86 ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gk 165 (298)
T KOG0806|consen 86 LSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGK 165 (298)
T ss_pred hHHHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCc
Confidence 999999999999999888776 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 232 IGIGICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 232 igi~ICyD~~fpe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
||+.||||++|+|+++.+++.||++|++|++|+ .+.++.||..+.++||..|..+|+.++.
T Consensus 166 fGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~ 229 (298)
T KOG0806|consen 166 FGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSP 229 (298)
T ss_pred eEEEEEecccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCc
Confidence 999999999999999999999999999999999 6789999999999999999999998764
No 37
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=3.2e-35 Score=291.53 Aligned_cols=197 Identities=30% Similarity=0.409 Sum_probs=170.5
Q ss_pred eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHh--
Q 022660 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL-- 159 (294)
Q Consensus 83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~-- 159 (294)
||||++|+++. +|++.|++++.+++++|+++|+|||||||++++||...++....... ....+.+.+++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~------~~~~~~l~~La~~~~ 74 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL------AACEAALERLAAATA 74 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH------HHHHHHHHHHHHhcC
Confidence 69999999975 89999999999999999999999999999999999876542222211 1245567777777
Q ss_pred cCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeecc
Q 022660 160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYD 239 (294)
Q Consensus 160 ~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD 239 (294)
+++.+++| .+++.++++||++++++ +|+++++|+|+||++++ .|.|..+|++|+...+|+++++|+|++||||
T Consensus 75 ~~i~ii~G-~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~-----~~~E~~~f~~G~~~~~~~~~g~rigv~IC~D 147 (540)
T PRK13981 75 GGPAVLVG-HPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYG-----VFDEKRYFAPGPEPGVVELKGVRIGVPICED 147 (540)
T ss_pred CCCEEEEe-CcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCC-----CcCccccccCCCCceEEEECCEEEEEEEehh
Confidence 79999999 56777889999999998 89999999999996554 5688899999999999999999999999999
Q ss_pred CcCcHHHHHHHHCCCeEEEEcCCCCCCCC-HHHHHHHHHHHHHHhCCeeEeecc
Q 022660 240 IRFQELAMIYGARGAHLICYPGAFNMTTG-PLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 240 ~~fpe~~r~la~~Gadlil~ps~~~~~~~-~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
++||++.+.++.+|||+|++|++++...+ ..+|..+.++||+||++|+|++|.
T Consensus 148 ~~~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~ 201 (540)
T PRK13981 148 IWNPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQ 201 (540)
T ss_pred hcCCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEec
Confidence 99999999999999999999999876544 356778899999999999999996
No 38
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=2.6e-34 Score=274.63 Aligned_cols=198 Identities=21% Similarity=0.275 Sum_probs=164.2
Q ss_pred CceEEEEEeccccc-------cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHH
Q 022660 81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML 153 (294)
Q Consensus 81 ~~~rValvQ~~v~~-------d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l 153 (294)
+++||+++|+++++ +.++|++++.++++++.+ ++|||||||+++++|..+. .+...+.+
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l 223 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL 223 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence 46899999999864 357889999999988876 9999999999999874321 11367889
Q ss_pred HHHHHhcCcEEEEeeeeeeeCC--eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcccc------cc---ccCccCCC
Q 022660 154 SEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF------IE---SKSLTAGE 220 (294)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~~~~--~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f------~E---~~~f~~G~ 220 (294)
+++|+++++.+++|.....+++ ++||++++++++|+++.+|+|+||+||+ +|.+..+ .+ ..+|++|+
T Consensus 224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~ 303 (391)
T TIGR00546 224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP 303 (391)
T ss_pred HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence 9999999999999954332222 7999999999999999999999999886 3533211 01 24789999
Q ss_pred CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 221 TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 221 ~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
++.+++++++|+|++||||..|||..|.++++|||++++++|.. .+.++.+|..++++||+|||+++|++|.
T Consensus 304 ~~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n 378 (391)
T TIGR00546 304 GPQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATN 378 (391)
T ss_pred CCCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecC
Confidence 99999999999999999999999999999999999999999843 3346788999999999999999999984
No 39
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=285.60 Aligned_cols=205 Identities=24% Similarity=0.262 Sum_probs=171.7
Q ss_pred CCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660 78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (294)
Q Consensus 78 ~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (294)
+..+.||||++|+++. +|++.|++++.+++++|+++|||||||||++++||.+.++......++. ..+.++.|+++
T Consensus 8 ~~~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~---~~~~l~~L~~~ 84 (679)
T PRK02628 8 YRHGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA---VEDALATLVEA 84 (679)
T ss_pred hhCCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh---hHHHHHHHHHH
Confidence 3456799999999986 9999999999999999999999999999999999998764322121211 13588899999
Q ss_pred HHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCC--------------
Q 022660 157 ARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-------------- 222 (294)
Q Consensus 157 A~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~-------------- 222 (294)
|+++++.|++| ++++.++++||++++++ +|++++.|+|+||+. +..|.|.++|++|+..
T Consensus 85 a~~~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~-----~~~f~E~r~F~~G~~~~~~~~~~~g~~vpf 157 (679)
T PRK02628 85 SADLDPLLVVG-APLRVRHRLYNCAVVIH-RGRILGVVPKSYLPN-----YREFYEKRWFAPGDGARGETIRLCGQEVPF 157 (679)
T ss_pred HhhcCEEEEEe-eEEEECCEEEEEEEEEc-CCEEEEEeccccCCC-----CCcccccccccCCCCCCCceEeecCeeecc
Confidence 99999999999 67777889999999997 799999999999954 4478899999999873
Q ss_pred ---eEEEe---CCceEEEeeeccCcCcHHH-HHHHHCCCeEEEEcCCCCCCCCHHHHH-HHHHHHHHHhCCeeEeecc
Q 022660 223 ---TIVDT---DVGRIGIGICYDIRFQELA-MIYGARGAHLICYPGAFNMTTGPLHWE-LLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 223 ---~v~~~---~~grigi~ICyD~~fpe~~-r~la~~Gadlil~ps~~~~~~~~~~~~-~l~~~RAiEn~~~vv~an~ 292 (294)
.+|++ +++|||+.||||+||||.. +.++.+|||+|++|++|+...+..+|. .+.+.||.+++.++|.+|.
T Consensus 158 G~~~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~ 235 (679)
T PRK02628 158 GTDLLFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAA 235 (679)
T ss_pred CCceeEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEec
Confidence 24655 5889999999999999985 889999999999999998877776665 5678899999777766663
No 40
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=5.9e-33 Score=237.94 Aligned_cols=171 Identities=38% Similarity=0.630 Sum_probs=142.2
Q ss_pred EEEEEeccc---cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCC-----CCccchhhhhccCCCCcHHHHHHHH
Q 022660 84 KVGLCQLSV---TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-----DSFPVYAEDIDAGGDASPSTAMLSE 155 (294)
Q Consensus 84 rValvQ~~v---~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~-----~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (294)
|||++|+++ ..|.+.|++++.+++++|++.|+|||||||++++||.. ....+....... ..++.++.+.+
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 78 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEP--LDGPYLERLAE 78 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBH--STSHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccc--cccHHHHHHHH
Confidence 799999994 58999999999999999999999999999999999833 222222111110 12579999999
Q ss_pred HHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccc-cccCccCC-CCCeEEEeC-----
Q 022660 156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFI-ESKSLTAG-ETPTIVDTD----- 228 (294)
Q Consensus 156 lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~-E~~~f~~G-~~~~v~~~~----- 228 (294)
+|+++++++++| +++++++++||++++++++|+++++|+|+||+||+ .+. |..+|.+| ....+++++
T Consensus 79 ~a~~~~~~i~~G-~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~-----~~~P~~~~~~~g~~~~~~~~~~~~~~~ 152 (186)
T PF00795_consen 79 LAKENGITIVAG-IPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFG-----EYIPERRYFSPGGDPFPVFETPVFDFG 152 (186)
T ss_dssp HHHHHTSEEEEE-EEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTT-----TTTTHHHHSBEESSESEEEEETETEET
T ss_pred HHHhcCCccccc-ccccccccccceeEEEEeeecccccccceeeeccc-----cccccceeeeeccceeeeeecceeeec
Confidence 999999999999 78889999999999999999999999999998876 334 66778887 556677765
Q ss_pred CceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC
Q 022660 229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGA 262 (294)
Q Consensus 229 ~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~ 262 (294)
++|||++||||.+||+++|.++++|||+|++|+|
T Consensus 153 g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 153 GGRIGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp TEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred cceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 6999999999999999999999999999999985
No 41
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=4.7e-32 Score=274.63 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=157.4
Q ss_pred CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
|+.||||++|+++. +|++.|++++.+.+++|+++|||||||||++++||.+.++....+.++. ..+.++.|.+.++
T Consensus 1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~---~~~~L~~La~~a~ 77 (700)
T PLN02339 1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTH---SWECLAEILVGDL 77 (700)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHH---HHHHHHHHHhhcc
Confidence 34799999999987 8999999999999999999999999999999999998654222222211 0134455555556
Q ss_pred hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-----------------
Q 022660 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET----------------- 221 (294)
Q Consensus 159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~----------------- 221 (294)
++++.+++| .++..++++||+++++. +|++++.|+|+||++ +..|.|.++|++|++
T Consensus 78 ~~~i~vvvG-~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpn-----y~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~ 150 (700)
T PLN02339 78 TDGILCDIG-MPVIHGGVRYNCRVFCL-NRKILLIRPKMWLAN-----DGNYRELRWFTAWKHKKKVEDFQLPEEIAEAT 150 (700)
T ss_pred cCCeEEEEe-eeEEECCeEEEEEEEEe-CCEEEEEEecccCCC-----CCccccccccccCccCCcceeeccccchhhcc
Confidence 789999999 67777789999999995 899999999999954 347889999999862
Q ss_pred --------CeEEEeCCceEEEeeeccCcCcHHHHH-HHHCCCeEEEEcCCCCCCCC--HHHHHHHHHHHHHHhCCeeEee
Q 022660 222 --------PTIVDTDVGRIGIGICYDIRFQELAMI-YGARGAHLICYPGAFNMTTG--PLHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 222 --------~~v~~~~~grigi~ICyD~~fpe~~r~-la~~Gadlil~ps~~~~~~~--~~~~~~l~~~RAiEn~~~vv~a 290 (294)
..+|++++.+||+.||||+|||+..+. ++.+|||||++|+++++..+ ..++..+....+..++.| |.+
T Consensus 151 g~~~vpfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vya 229 (700)
T PLN02339 151 SQKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYA 229 (700)
T ss_pred CCceeccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEE
Confidence 124455677999999999999999995 99999999999998654433 234455555555555788 567
Q ss_pred cc
Q 022660 291 FV 292 (294)
Q Consensus 291 n~ 292 (294)
|.
T Consensus 230 N~ 231 (700)
T PLN02339 230 NQ 231 (700)
T ss_pred cC
Confidence 75
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=2.8e-32 Score=268.61 Aligned_cols=197 Identities=20% Similarity=0.226 Sum_probs=160.1
Q ss_pred CceEEEEEeccccc-------cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHH
Q 022660 81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML 153 (294)
Q Consensus 81 ~~~rValvQ~~v~~-------d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l 153 (294)
+++||+++|++++. +.++|++++.+.+++ +++|+|||||||++++++..++ .++..+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~~~~-------------~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLLEDL-------------PQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCcccccccccc-------------cHHHHHHH
Confidence 46899999999763 456788889888884 4679999999999987653111 12467789
Q ss_pred HHHHHhcCcEEEEeeeeeee--CC-eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcccc--------ccccCccCCC
Q 022660 154 SEVARLLKITIVGGSIPERS--GD-RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--------IESKSLTAGE 220 (294)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~~~--~~-~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f--------~E~~~f~~G~ 220 (294)
+++++++++.+++|.....+ ++ ++||+++++++ |+++.+|+|+||+||+ +|.+..+ .+..+|.+|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999543222 23 69999999998 7789999999999886 3644221 1223689998
Q ss_pred -CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC--C-CCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 221 -TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGA--F-NMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 221 -~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~--~-~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+..+++++++|+|++||||..|||..|.++++|+|++++++| | +.+.++.||..++++||+|||+++|++|-
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n 438 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATN 438 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecC
Confidence 788999999999999999999999999999999999999999 3 44456778999999999999999999873
No 43
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=1.3e-30 Score=250.59 Aligned_cols=186 Identities=20% Similarity=0.230 Sum_probs=152.0
Q ss_pred eEEEEEeccccccH-------HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHH
Q 022660 83 FKVGLCQLSVTADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE 155 (294)
Q Consensus 83 ~rValvQ~~v~~d~-------~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (294)
.+|+++|++++++. +.+++++.+.+++|.+.++|+|||||++++++.... .+..+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~--------------~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS--------------PILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC--------------HHHHHHHHH
Confidence 49999999987543 578899999999888899999999999987643211 236667777
Q ss_pred HHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCC--CCCcc---------ccccccCccCCCCCeE
Q 022660 156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI---------TFIESKSLTAGETPTI 224 (294)
Q Consensus 156 lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~---------~f~E~~~f~~G~~~~v 224 (294)
.+ .++.+++|+ ...+++++|||++++++ |+ +..|+|+||+||+ +|-.. .+.|..+|++|++..+
T Consensus 261 ~~--~~~~ii~G~-~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~ 335 (418)
T PRK12291 261 LS--HKITIITGA-LRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSD 335 (418)
T ss_pred hc--cCCcEEEee-eeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCcc
Confidence 74 578899994 45556789999999974 77 6899999999886 46322 2346668999999999
Q ss_pred EEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCC---CCCCCHHHHHHHHHHHHHHhCCeeEeec
Q 022660 225 VDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAF---NMTTGPLHWELLQRARATDNQVLPHSPF 291 (294)
Q Consensus 225 ~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~---~~~~~~~~~~~l~~~RAiEn~~~vv~an 291 (294)
+++++.|+|++||||..|||..| +|+|++++++|+ +.+.++.+|..+.|+||+|||+++++|+
T Consensus 336 ~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvrat 401 (418)
T PRK12291 336 FTLDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSA 401 (418)
T ss_pred eeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEc
Confidence 99999999999999999999988 899999999983 3345677888889999999999999986
No 44
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.3e-28 Score=212.71 Aligned_cols=201 Identities=29% Similarity=0.432 Sum_probs=174.6
Q ss_pred CCCCceEEEEEeccc-cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC----------------ccchhhhh
Q 022660 78 PPVAKFKVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS----------------FPVYAEDI 140 (294)
Q Consensus 78 ~~~~~~rValvQ~~v-~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~----------------~~~~~~~~ 140 (294)
+++...||+++|... ..|..+.++++++.+.+|++.|++||||||.++.||+... +..|.+
T Consensus 13 d~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a-- 90 (337)
T KOG0805|consen 13 DSSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHA-- 90 (337)
T ss_pred CcccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHH--
Confidence 577789999999975 5899999999999999999999999999999999998542 111211
Q ss_pred ccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCC-
Q 022660 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG- 219 (294)
Q Consensus 141 ~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G- 219 (294)
.+...+++..++|..+|+++++.+++| ..++++..+|.++++|+|+|..+++|||..++. .|...|..|
T Consensus 91 ~AIev~gpEv~~l~~la~~~~v~lv~G-~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa---------lERciWGqGD 160 (337)
T KOG0805|consen 91 SAIEVPGPEVERLAELAKKNNVYLVMG-AIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA---------LERCIWGQGD 160 (337)
T ss_pred HhhcCCChHHHHHHHHhhcCCeEEEEE-EEeccccEEEEEEEEECCCccccccccccccch---------hhheeeccCC
Confidence 112346799999999999999999999 679999999999999999999999999999854 565555554
Q ss_pred -CCCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecccC
Q 022660 220 -ETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF 294 (294)
Q Consensus 220 -~~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~~~ 294 (294)
...+||+|+.|+||-+||+|.++|-....+..+|.+|.+.|+.. ....|....+.-|+|.||||++|+||.
T Consensus 161 GSTiPV~dT~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~D----~r~~w~~sM~~IAlEG~cFvlSA~QF~ 232 (337)
T KOG0805|consen 161 GSTIPVYDTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTAD----GRKEWQSSMLHIALEGGCFVLSACQFC 232 (337)
T ss_pred CcccceeecccchhceeeecccccHHHHHHHHhcCcEEEeccCCC----CcHHHHHhhhheeecCceEEEEhhhhc
Confidence 55999999999999999999999999999999999999999873 567899999999999999999999984
No 45
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.3e-26 Score=227.51 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=152.5
Q ss_pred CCCCceEEEEEeccccccHHHHHHHHH----HHHHHHH-----HCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcH
Q 022660 78 PPVAKFKVGLCQLSVTADKERNIAHAR----RAIEEAA-----EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASP 148 (294)
Q Consensus 78 ~~~~~~rValvQ~~v~~d~~~n~~~i~----~~i~~A~-----~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~ 148 (294)
...+.++|+++|.+++++...+.+... ..+.... ..++|+|||||.+++-...+. ..
T Consensus 223 ~~~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~~~--------------~~ 288 (518)
T COG0815 223 VGEPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLTRH--------------PD 288 (518)
T ss_pred CCCCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchhhc--------------ch
Confidence 344568999999999855433322222 2222222 378999999999987422111 12
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeee--eCC--eeEEEEEEEccCCcEEEEEeecccCCCC--CCCccccc--------ccc
Q 022660 149 STAMLSEVARLLKITIVGGSIPER--SGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFI--------ESK 214 (294)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~--~~~--~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f~--------E~~ 214 (294)
...++.+.+.+.+..+++| ...+ .++ .+|||+++++++|++..+|+|+||+||+ +|.+..+. ...
T Consensus 289 ~~~~~~~~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~ 367 (518)
T COG0815 289 ALARLAEALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMS 367 (518)
T ss_pred HHHHHHHHHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccc
Confidence 3566788888888888888 3332 133 4899999999999999999999999998 56443221 134
Q ss_pred CccCCCCCeEEEeCCc-eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC---CCCCCCHHHHHHHHHHHHHHhCCeeEee
Q 022660 215 SLTAGETPTIVDTDVG-RIGIGICYDIRFQELAMIYGARGAHLICYPGA---FNMTTGPLHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 215 ~f~~G~~~~v~~~~~g-rigi~ICyD~~fpe~~r~la~~Gadlil~ps~---~~~~~~~~~~~~l~~~RAiEn~~~vv~a 290 (294)
.|.+|+...++.+.++ |+++.||||..||+..|...++|||+|+++|| ++.+.++.||..++++||+|+|+++|+|
T Consensus 368 ~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRA 447 (518)
T COG0815 368 DFSRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRA 447 (518)
T ss_pred cccCCCCCcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEE
Confidence 6788999999999876 69999999999999999999999999999999 4556788999999999999999999998
Q ss_pred c
Q 022660 291 F 291 (294)
Q Consensus 291 n 291 (294)
+
T Consensus 448 t 448 (518)
T COG0815 448 T 448 (518)
T ss_pred c
Confidence 6
No 46
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.94 E-value=5.3e-26 Score=216.29 Aligned_cols=187 Identities=16% Similarity=0.061 Sum_probs=144.4
Q ss_pred EEEEEeccccccH-----HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 84 KVGLCQLSVTADK-----ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 84 rValvQ~~v~~d~-----~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
++-.+++++.++. .+..+++.+.+++|.+.|+|+|||||+++++|.... .+.+.+.++
T Consensus 187 ~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~-----------------~~~~~~~l~ 249 (388)
T PRK13825 187 GWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT-----------------ERLWRESLR 249 (388)
T ss_pred CeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc-----------------cHHHHHHHH
Confidence 7778888865322 233446677777788889999999999999874311 112356668
Q ss_pred hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCC--CCCccccccccCccCCC-CCeEEEeCCceEEEe
Q 022660 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFIESKSLTAGE-TPTIVDTDVGRIGIG 235 (294)
Q Consensus 159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ 235 (294)
++++.+++|+ .+++++++||++++++++|.. ..|+|+||++++ +|....+.|..++.+|. +..++++++.|+|++
T Consensus 250 ~~~i~II~G~-~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~l 327 (388)
T PRK13825 250 GSDVTVIAGA-AVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPL 327 (388)
T ss_pred hCCCeEEEEe-eecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEE
Confidence 9999999995 456678899999999998865 499999999886 46554455777787773 446899999999999
Q ss_pred eeccCcC--cHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeec
Q 022660 236 ICYDIRF--QELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPF 291 (294)
Q Consensus 236 ICyD~~f--pe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an 291 (294)
||||..| |+..+ ..+|+|+|++++|.. .+..+.++..+.++||+|+|+++|+|+
T Consensus 328 ICYE~~F~~pel~~--~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~ 386 (388)
T PRK13825 328 ICYEQLLVWPVLQS--MLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAF 386 (388)
T ss_pred EeeeecCcHHHHHh--hccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEec
Confidence 9999988 66533 379999999999933 233467888999999999999999986
No 47
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.87 E-value=5.6e-21 Score=167.83 Aligned_cols=223 Identities=29% Similarity=0.426 Sum_probs=179.8
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCceEEEEEecccc----c----cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCC
Q 022660 58 MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT----A----DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS 129 (294)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~rValvQ~~v~----~----d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~ 129 (294)
+--.|..+..+-.+ .-..+..-+-++|+++|-.+. . ..+.--+++...|+.|+..|+.+|+|.|.|..+|.
T Consensus 50 s~~df~lqgy~f~a-~keq~r~pr~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfa 128 (387)
T KOG0808|consen 50 SKHDFDLQGYSFSA-DKEQMRNPRVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFA 128 (387)
T ss_pred cccCcceeeeeecc-chhhhcCCcEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchh
Confidence 34455555555433 222333445689999998863 2 23455677788888889999999999999998876
Q ss_pred CC-----CccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee---CCeeEEEEEEEccCCcEEEEEeecccCC
Q 022660 130 HD-----SFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFD 201 (294)
Q Consensus 130 ~~-----~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~il~~y~K~~L~~ 201 (294)
.- .|-++++.++ .++..+-++++|+++++.|+-. +.+++ ++-++|++++|+-+|.+++++||.|.
T Consensus 129 fctrerlpwtefaesv~----~gptt~flqklakkhdmvivsp-ilerd~ehgdvlwntavvisn~g~vigk~rknhi-- 201 (387)
T KOG0808|consen 129 FCTRERLPWTEFAESVD----TGPTTKFLQKLAKKHDMVIVSP-ILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHI-- 201 (387)
T ss_pred hhccccCchhhhccccc----cCchHHHHHHHHhhCCeEEEeh-hhhcccccCceeeeeeEEEccCCceecccccccC--
Confidence 42 2346666655 3689999999999999988765 77776 46799999999999999999999997
Q ss_pred CCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHH
Q 022660 202 IDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARA 280 (294)
Q Consensus 202 ~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RA 280 (294)
|-...|.|+.+|-.|+ +-+||++..|||++-|||--.+|.-|..+...||+||++|+++-...+...|..-++-.|
T Consensus 202 ---prvgdfnestyymeg~lghpvfet~fgriavnicygrhhplnwlmy~lngaeiifnpsatvgalseplwpiearnaa 278 (387)
T KOG0808|consen 202 ---PRVGDFNESTYYMEGDLGHPVFETVFGRIAVNICYGRHHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAA 278 (387)
T ss_pred ---CcccccCcceeEeecCCCCceeeeecceEEEEeeccCCCchhhhhhhccCceEEECCccccccccCccCchhhhhhh
Confidence 6566899999988886 489999999999999999999999999999999999999999765556678988889999
Q ss_pred HHhCCeeEeec
Q 022660 281 TDNQVLPHSPF 291 (294)
Q Consensus 281 iEn~~~vv~an 291 (294)
+.|.+|+++-|
T Consensus 279 ianh~ft~~in 289 (387)
T KOG0808|consen 279 IANHYFTGSIN 289 (387)
T ss_pred hhhceEEEeec
Confidence 99999998866
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=135.20 Aligned_cols=171 Identities=24% Similarity=0.279 Sum_probs=139.2
Q ss_pred CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
+..++||.|+.|-| -|++.|..++.+.|++|++.||.+-+=||+-++||.+.|...-.+... ...+.|.++..
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~------HswE~l~~l~~ 75 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLL------HSWEMLAELVE 75 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHH------HHHHHHHHHHc
Confidence 46789999999998 799999999999999999999999999999999999977432222221 35566677664
Q ss_pred h---cCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCe------------
Q 022660 159 L---LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT------------ 223 (294)
Q Consensus 159 ~---~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~------------ 223 (294)
. .++.+.+| +|....+-.||+.+++ -+|+++....|+-|.+.+ .|.|.+||+++..+.
T Consensus 76 ~~~~~~il~diG-mPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDg-----nyRE~RwFt~W~~~~~~e~y~lP~~i~ 148 (706)
T KOG2303|consen 76 SPVTQDILCDIG-MPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDG-----NYRESRWFTPWTRPRVTEEYQLPRMIQ 148 (706)
T ss_pred CCCCCCeeEecC-Cchhhhhhhhccceee-cCCeEEEEcccceeccCC-----CchhhccccccccccccceeeccHHHH
Confidence 3 35778888 8999999999999988 499999999999996654 788999999886432
Q ss_pred -------------EEEeCCceEEEeeeccCcCcHHHH-HHHHCCCeEEEEcCCC
Q 022660 224 -------------IVDTDVGRIGIGICYDIRFQELAM-IYGARGAHLICYPGAF 263 (294)
Q Consensus 224 -------------v~~~~~grigi~ICyD~~fpe~~r-~la~~Gadlil~ps~~ 263 (294)
++++-+--||.-||.|+|.|.... .++..|++|+.+.+..
T Consensus 149 ~~~~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGS 202 (706)
T KOG2303|consen 149 KHTGQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGS 202 (706)
T ss_pred HHhCCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCcc
Confidence 444444569999999999988776 6888999999998863
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=80.93 E-value=12 Score=34.28 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC-CeeEEEEEEE
Q 022660 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVF 184 (294)
Q Consensus 106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi 184 (294)
..+..+.+|||+|+.|-.+.... . ......++.-|.|++++++.-+....++ ..++-...++
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~--~---------------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv 223 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPA--K---------------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV 223 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCc--c---------------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence 33444578999999996542210 0 1234456778889999988542221122 2455567788
Q ss_pred ccCCcEEEE
Q 022660 185 GSDGKLIAK 193 (294)
Q Consensus 185 ~~~G~il~~ 193 (294)
+|+|+++..
T Consensus 224 dP~G~ila~ 232 (291)
T cd07565 224 NFDGRTLGE 232 (291)
T ss_pred CCCCCEEEe
Confidence 999998743
No 50
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=73.80 E-value=10 Score=33.66 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC-C-eeEEEEEE
Q 022660 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-D-RLYNTCCV 183 (294)
Q Consensus 106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~-~~yNsa~v 183 (294)
..+.++.+|+|||+.|=.+.... .. ......++.-|.+++++++..+....++ + ..+-...+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~~--~~--------------~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTMTT--GP--------------AHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCCc--ch--------------HHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 34456688999999984321110 00 0133334567889999987653221121 1 23334667
Q ss_pred EccCCcEE
Q 022660 184 FGSDGKLI 191 (294)
Q Consensus 184 i~~~G~il 191 (294)
++|+|+++
T Consensus 225 ~~p~G~il 232 (265)
T cd07572 225 VDPWGEVL 232 (265)
T ss_pred ECCCcHHH
Confidence 89999875
No 51
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=72.90 E-value=16 Score=32.52 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCC-eeEEEEEEEccC
Q 022660 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFGSD 187 (294)
Q Consensus 109 ~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~-~~yNsa~vi~~~ 187 (294)
..+..|+|+|+.|=.+. +.... .......++..|.+++++++.-.....+++ .+.=...+++|+
T Consensus 157 ~~~~~ga~ll~~ps~~~--~~~~~-------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~ 221 (261)
T cd07570 157 ELALAGADLILNLSASP--FHLGK-------------QDYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADND 221 (261)
T ss_pred HHHHcCCcEEEEeCCCc--cccCc-------------HHHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCC
Confidence 34578999999995432 11110 001334577788999999876533222222 233456788999
Q ss_pred CcEEEE
Q 022660 188 GKLIAK 193 (294)
Q Consensus 188 G~il~~ 193 (294)
|+++..
T Consensus 222 G~vl~~ 227 (261)
T cd07570 222 GELLAE 227 (261)
T ss_pred CCEEEe
Confidence 998753
No 52
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=71.81 E-value=17 Score=33.63 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=41.5
Q ss_pred HHHHC-CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccC
Q 022660 109 EAAEK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (294)
Q Consensus 109 ~A~~~-gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~ 187 (294)
..+.+ |+|+|+.|=.+...... ......++.-|.+++++++.-.. ... ...+-...+++|+
T Consensus 191 ~la~~~GAdlil~paaw~~~~~~----------------~~w~~l~~arA~eN~~~vi~~N~-~g~-~~~~G~S~iv~P~ 252 (299)
T cd07567 191 ELVKKLGVDDIVFPTAWFSELPF----------------LTAVQIQQAWAYANGVNLLAANY-NNP-SAGMTGSGIYAGR 252 (299)
T ss_pred HHHHhCCCCEEEECCccCCCCCc----------------hhHHHHHHHHHHHcCceEEEecC-CCC-cCccccceEEcCC
Confidence 33455 99999999554321110 01334467788999999986532 111 2233556778999
Q ss_pred -CcEEEEE
Q 022660 188 -GKLIAKH 194 (294)
Q Consensus 188 -G~il~~y 194 (294)
|+++...
T Consensus 253 ~G~v~a~~ 260 (299)
T cd07567 253 SGALVYHY 260 (299)
T ss_pred CCcEEEEe
Confidence 9998654
No 53
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=71.77 E-value=27 Score=30.68 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=40.2
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC-CeeEEEEEEEcc
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVFGS 186 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi~~ 186 (294)
+.....|||+|+.|=.+...+. . .....++.-|.+++++++.....-.++ ..++-...+++|
T Consensus 152 ~~~~~~gadii~~p~~~~~~~~-----~------------~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~p 214 (254)
T cd07576 152 RALALAGADLVLVPTALMEPYG-----F------------VARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAGP 214 (254)
T ss_pred HHHHHCCCCEEEECCccCCCcc-----h------------hhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEECC
Confidence 3345789999999854322211 0 123345667889999987542211122 234445677899
Q ss_pred CCcEEE
Q 022660 187 DGKLIA 192 (294)
Q Consensus 187 ~G~il~ 192 (294)
+|+++.
T Consensus 215 ~G~il~ 220 (254)
T cd07576 215 DGTVLA 220 (254)
T ss_pred CCCEeE
Confidence 998763
No 54
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=71.54 E-value=35 Score=30.44 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=41.4
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCC-eeEEEEEEEcc
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFGS 186 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~-~~yNsa~vi~~ 186 (294)
+..+.+|+|+|+.|=.+.......+ .. ........+..|.+++++++.-...-.+++ .++-...+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~~---~~--------~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPPE---GG--------PPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCccc---cc--------CcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 3446789999999875532211100 00 001222345567899999876322222222 34456688999
Q ss_pred CCcEEE
Q 022660 187 DGKLIA 192 (294)
Q Consensus 187 ~G~il~ 192 (294)
+|+++.
T Consensus 223 ~G~~~~ 228 (268)
T cd07580 223 DGWPLA 228 (268)
T ss_pred CCCeee
Confidence 999863
No 55
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.87 E-value=35 Score=30.14 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCe-eEEEEEEEc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFG 185 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~-~yNsa~vi~ 185 (294)
.+.+..+|+|+|+.|=.+. ... ........+.-|.|++++++.-.....+++. ++-...+++
T Consensus 155 ~r~~~~~gadll~~ps~~~----~~~-------------~~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii~ 217 (258)
T cd07584 155 ARILTLKGAEVIFCPSAWR----EQD-------------ADIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKILN 217 (258)
T ss_pred HHHHHHCCCcEEEECCccC----CCC-------------chHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEEC
Confidence 4555678999999994321 110 0112223456678999998853221122223 333567789
Q ss_pred cCCcEEE
Q 022660 186 SDGKLIA 192 (294)
Q Consensus 186 ~~G~il~ 192 (294)
|+|+++.
T Consensus 218 p~G~il~ 224 (258)
T cd07584 218 PRGQVLA 224 (258)
T ss_pred CCCceee
Confidence 9999863
No 56
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.44 E-value=19 Score=32.20 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
.+..++.+.+.++.|+.-|++.|++.-.. .++.. +..+..+.+ -..++.+.+.|+++|+.+.+=
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~-~~~~~~~~~------~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLT-PPNVIWGRL------AENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCC-CHHHHHHHH------HHHHHHHHHHHHHcCCEEEEe
Confidence 45678899999999999999998886542 22221 111111111 147788999999999988653
No 57
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=69.28 E-value=18 Score=34.38 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee----------------
Q 022660 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---------------- 173 (294)
Q Consensus 110 A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~---------------- 173 (294)
.+.+|||||+.|=.+... . .. ..+...++.-|-+++++++.....-.+
T Consensus 237 la~~GAdiil~Psa~~~~-~-~~--------------~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~ 300 (363)
T cd07587 237 YGLNGAEIVFNPSATVGA-L-SE--------------PMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHK 300 (363)
T ss_pred HHHcCCcEEEECCCcCCC-C-ch--------------HHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccc
Confidence 357799999999553211 0 00 013334566788999998753221111
Q ss_pred -CCeeEEEEEEEccCCcEE
Q 022660 174 -GDRLYNTCCVFGSDGKLI 191 (294)
Q Consensus 174 -~~~~yNsa~vi~~~G~il 191 (294)
...+|-...+++|+|+++
T Consensus 301 ~~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 301 DFGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred ccccccceeEEECCCCCCc
Confidence 023556778888888864
No 58
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=68.50 E-value=48 Score=29.62 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=42.1
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-----CCeeEEEEE
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-----GDRLYNTCC 182 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----~~~~yNsa~ 182 (294)
+..+.+|||+|+.|=.+..... +..... .......++.-|.+++++++.-...-.+ +..++=...
T Consensus 160 r~~a~~ga~lil~ps~~~~~~~-~~~~~~---------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 229 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEPH-DPDLDS---------RDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSF 229 (279)
T ss_pred HHHHHcCCCEEEecCccCCCCc-cccccc---------HHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEE
Confidence 4456789999999854322110 000000 0123344555688999988754221111 223556778
Q ss_pred EEccCCcEEE
Q 022660 183 VFGSDGKLIA 192 (294)
Q Consensus 183 vi~~~G~il~ 192 (294)
+++|+|+++.
T Consensus 230 i~~p~G~il~ 239 (279)
T TIGR03381 230 IADHTGELVA 239 (279)
T ss_pred EECCCCcEee
Confidence 8999999864
No 59
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=67.83 E-value=42 Score=31.77 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=43.8
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCC-eeEEEEEEE
Q 022660 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVF 184 (294)
Q Consensus 106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~-~~yNsa~vi 184 (294)
..+..+.+|||||+-|-. |.... . ......++..|.+++++++.-...-.+++ .++=...++
T Consensus 174 ~~R~la~~GAelii~psa----~~~~~-~------------~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQG----YMYPA-K------------EQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccc----cCCCc-h------------HHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 444456789999998843 32110 0 02334567778899999876432222222 345667889
Q ss_pred ccCCcEEEE
Q 022660 185 GSDGKLIAK 193 (294)
Q Consensus 185 ~~~G~il~~ 193 (294)
+|+|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998754
No 60
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.82 E-value=42 Score=29.87 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC-CeeEEEEEEEccCC
Q 022660 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVFGSDG 188 (294)
Q Consensus 110 A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi~~~G 188 (294)
....|+|+|+.|=.+......... .. .......++..|.+++++++.-+..-.++ ..++-...+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~~~~~~~---~~-------~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPARGVGGDF---DN-------EENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccccCcccc---ch-------hHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCC
Confidence 457899999998654221100000 00 01234556777999999987653322222 23444567789999
Q ss_pred cEEE
Q 022660 189 KLIA 192 (294)
Q Consensus 189 ~il~ 192 (294)
+++.
T Consensus 225 ~il~ 228 (269)
T cd07586 225 EVVA 228 (269)
T ss_pred CEEE
Confidence 9864
No 61
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.33 E-value=34 Score=30.27 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=40.8
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCC-eeEEEEEEEc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFG 185 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~-~~yNsa~vi~ 185 (294)
.+..+.+|+|||+.|=.+....... .. ......++.-|.+++++++.....-..++ .+.=...+++
T Consensus 149 ~r~l~~~gadlil~p~~~~~~~~~~----~~---------~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~ 215 (261)
T cd07585 149 VRATALLGAEILFAPHATPGTTSPK----GR---------EWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILD 215 (261)
T ss_pred HHHHHHCCCCEEEECCccCCCCCcc----hH---------HHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEEC
Confidence 3445678999999985432111000 00 12334456778889999875321111222 2334567789
Q ss_pred cCCcEEE
Q 022660 186 SDGKLIA 192 (294)
Q Consensus 186 ~~G~il~ 192 (294)
|+|+++.
T Consensus 216 p~G~v~~ 222 (261)
T cd07585 216 PYGRVLA 222 (261)
T ss_pred CCCCEEe
Confidence 9998864
No 62
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=67.29 E-value=38 Score=30.56 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=39.3
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee----CCeeEEEEE
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS----GDRLYNTCC 182 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~----~~~~yNsa~ 182 (294)
.+..+.+|+|||+.|=.+..++... ......+.-|.+++++++.-.....+ ...++-...
T Consensus 171 ~r~la~~Ga~li~~ps~~~~~~~~~----------------~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ 234 (287)
T cd07568 171 WRALGLNGAEIVFNPSATVAGLSEY----------------LWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSY 234 (287)
T ss_pred HHHHHHCCCeEEEECCcCCCCCchh----------------hhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeE
Confidence 3445678999999985432221100 11112345577889988642111111 124556677
Q ss_pred EEccCCcEEE
Q 022660 183 VFGSDGKLIA 192 (294)
Q Consensus 183 vi~~~G~il~ 192 (294)
+++|+|+++.
T Consensus 235 ii~p~G~il~ 244 (287)
T cd07568 235 FVDPRGQFVA 244 (287)
T ss_pred EECCCceEEE
Confidence 8999999874
No 63
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.56 E-value=29 Score=31.14 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
.++.++.+++.++.|..-|++.|++|-. ..+.........+.+ -..++.+.+.|+++|+.+.+=
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~l~lE 152 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRF------IEGLAWAVEQAAAAQVMLAVE 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCc--ccccccccHHHHHHH------HHHHHHHHHHHHHhCCEEEEE
Confidence 3567888999999999999999998622 111111111111111 136777888999999988763
No 64
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=64.32 E-value=46 Score=30.28 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=40.6
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC----CeeE-EEE
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG----DRLY-NTC 181 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~----~~~y-Nsa 181 (294)
.+..+.+|+|||+.|=.+..... . ......++.-|.+++++++.-.....++ +..| -..
T Consensus 182 ~r~la~~Gadlil~psa~~~~~~-~---------------~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S 245 (294)
T cd07582 182 ARGLAMNGAEVLLRSSSEVPSVE-L---------------DPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGS 245 (294)
T ss_pred HHHHHHCCCcEEEEcCCCCCCcc-h---------------hhHHHHHHHHHHhcCCEEEEecccccCcccccCceeccee
Confidence 34456789999999876533210 0 0122345667889999987532211111 1223 355
Q ss_pred EEEccCCcEEE
Q 022660 182 CVFGSDGKLIA 192 (294)
Q Consensus 182 ~vi~~~G~il~ 192 (294)
.+++|+|+++.
T Consensus 246 ~ivdp~G~vla 256 (294)
T cd07582 246 MIVDYKGRVLA 256 (294)
T ss_pred EEECCCCCEEE
Confidence 66899999864
No 65
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=64.07 E-value=25 Score=31.57 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 94 ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 94 ~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
++.....+.+.+..+...+.|..+++|||..-+... . -.++..-...+|.+.++.|+-
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g--~-------------l~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR--G-------------LLPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC--C-------------CCCccHHHHHHHHHcCCCEEE
Confidence 445566667777777777789999999999755321 0 013555677889999988764
No 66
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=63.22 E-value=43 Score=33.52 Aligned_cols=61 Identities=11% Similarity=0.000 Sum_probs=46.6
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.++|..|+-.....|-.+.+.+.|+|+|++-+.- ......|..+...|+.--+..++..|+
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~--g~~~~~~~~i~~ik~~~p~~~vi~g~v 297 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQ--GDSIYQLEMIKYIKKTYPELDVIGGNV 297 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCC--CCcHHHHHHHHHHHHhCCCCcEEEecC
Confidence 4788888876666788889999999999987753 234567888888887655677777664
No 67
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=63.16 E-value=58 Score=29.21 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-----CCeeEEEE
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-----GDRLYNTC 181 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----~~~~yNsa 181 (294)
.+....+|+|||+.|=.+ ++...+....... .......++..|.+++++++.-...... +..++-..
T Consensus 160 ~r~~~~~gadlil~ps~~--~~~~~~~~~~~~~------~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S 231 (284)
T cd07573 160 ARLMALQGAEILFYPTAI--GSEPQEPPEGLDQ------RDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSS 231 (284)
T ss_pred HHHHHHCCCCEEEecCcc--cCCCCCccccCCc------hHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeecee
Confidence 444567899999998543 2211111000000 0123444566788999988753221111 22344566
Q ss_pred EEEccCCcEEE
Q 022660 182 CVFGSDGKLIA 192 (294)
Q Consensus 182 ~vi~~~G~il~ 192 (294)
.+++|+|+++.
T Consensus 232 ~i~~p~G~i~~ 242 (284)
T cd07573 232 FIADPFGEILA 242 (284)
T ss_pred EEECCCCCeee
Confidence 78899998864
No 68
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=63.03 E-value=49 Score=29.33 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeee-----eCCeeEEEEE
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER-----SGDRLYNTCC 182 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~-----~~~~~yNsa~ 182 (294)
+..+.+|||+|+.|-.+... .....++.-|.+++++++.-...-. .+..+.-...
T Consensus 151 r~~~~~Gadli~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~ 210 (259)
T cd07577 151 RTLALKGADIIAHPANLVLP--------------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQ 210 (259)
T ss_pred HHHHHcCCCEEEECCccCCc--------------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeE
Confidence 44457899999999643211 0112345667889999875321111 1122345668
Q ss_pred EEccCCcEEE
Q 022660 183 VFGSDGKLIA 192 (294)
Q Consensus 183 vi~~~G~il~ 192 (294)
+++|+|+++.
T Consensus 211 i~~p~G~i~~ 220 (259)
T cd07577 211 ITSPKGEVLA 220 (259)
T ss_pred EECCCCCEEe
Confidence 8999999864
No 69
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=62.39 E-value=29 Score=26.79 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 101 AHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 101 ~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
....+.+.++.+.|..+++|||...... ..+ .++..-...+|++.++.|+.
T Consensus 76 ~~~~~~~~~~l~~g~~v~ifPeG~~~~~--~~~-------------~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 76 ATALKAAIEVLKQGRSIGVFPEGTRSRG--RDI-------------LPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCC--CCC-------------CCcchhHHHHHHHcCCCEEe
Confidence 3445555666788899999999975421 111 12445567788898887764
No 70
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=61.35 E-value=48 Score=29.16 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=39.9
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEcc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (294)
.+..+.+|+|||+.|=.+.... .. .......++..|.+++++++.-. ..+....=...+++|
T Consensus 156 ~~~~~~~ga~lil~ps~~~~~~--~~-------------~~~~~~~~~~rA~en~~~vv~~n---~~g~~~~G~S~i~~p 217 (255)
T cd07581 156 ARALALAGADVIVVPAAWVAGP--GK-------------EEHWETLLRARALENTVYVAAAG---QAGPRGIGRSMVVDP 217 (255)
T ss_pred HHHHHHCCCcEEEECCcccCCC--Cc-------------hHHHHHHHHHHHHHhCCEEEEEc---CcCCCcccceEEECC
Confidence 3445678999999985332110 00 01234456677889999987531 112233344677889
Q ss_pred CCcEEE
Q 022660 187 DGKLIA 192 (294)
Q Consensus 187 ~G~il~ 192 (294)
+|+++.
T Consensus 218 ~G~i~~ 223 (255)
T cd07581 218 LGVVLA 223 (255)
T ss_pred Ccceee
Confidence 998764
No 71
>PLN02798 nitrilase
Probab=59.74 E-value=40 Score=30.58 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHH-HCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeee--eCCeeEEEEEE
Q 022660 107 IEEAA-EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER--SGDRLYNTCCV 183 (294)
Q Consensus 107 i~~A~-~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~--~~~~~yNsa~v 183 (294)
.+..+ ..|+|||+.|=.+.... .. ......++.-|-+++++++.-...-. ++...+-...+
T Consensus 172 ~r~~a~~~Gadlil~ps~~~~~~--~~--------------~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~i 235 (286)
T PLN02798 172 YQQLRFEHGAQVLLVPSAFTKPT--GE--------------AHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALI 235 (286)
T ss_pred HHHHHHhCCCcEEEECCcCCCCC--cH--------------HHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEE
Confidence 34445 79999999996432110 00 01223356677889998876321111 12334556778
Q ss_pred EccCCcEEE
Q 022660 184 FGSDGKLIA 192 (294)
Q Consensus 184 i~~~G~il~ 192 (294)
++|+|+++.
T Consensus 236 i~p~G~il~ 244 (286)
T PLN02798 236 IDPWGTVVA 244 (286)
T ss_pred ECCCccchh
Confidence 899998863
No 72
>PLN00202 beta-ureidopropionase
Probab=59.28 E-value=37 Score=32.95 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee----------C------
Q 022660 111 AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS----------G------ 174 (294)
Q Consensus 111 ~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~----------~------ 174 (294)
+.+|||+|+.|=.+.... . . ..+...++.-|.+++++++.-.....+ +
T Consensus 259 a~~GAdiIl~Psa~~~~~--~------~--------~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~ 322 (405)
T PLN00202 259 GLNGAEIVFNPSATVGDL--S------E--------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 322 (405)
T ss_pred HHCCCcEEEECCCCCCcc--C------H--------HHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccc
Confidence 578999999985432110 0 0 013344567788999988754221111 1
Q ss_pred -CeeEEEEEEEccCCcEE
Q 022660 175 -DRLYNTCCVFGSDGKLI 191 (294)
Q Consensus 175 -~~~yNsa~vi~~~G~il 191 (294)
..++-...+++|+|+++
T Consensus 323 ~~~f~G~S~Iv~P~G~vl 340 (405)
T PLN00202 323 FGHFYGSSHFSAPDASCT 340 (405)
T ss_pred cccccceeEEEcCCCCEe
Confidence 23566678888999875
No 73
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.26 E-value=45 Score=29.99 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
+..++.+++.++.|..-|++.|+++..... +.... ....+.+ -+.++.+.+.|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~~-~~~~~~~------~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDVY-YEEHD-EETRRRF------REGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcccc-cCcCC-HHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 456788899999999999999998743211 11111 1111111 13677888899999998865
No 74
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=57.63 E-value=50 Score=29.06 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-CCeeEEEEEEE
Q 022660 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVF 184 (294)
Q Consensus 106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi 184 (294)
..+....+|||+|+.|=.+.. .. . ......++.-|.+++++++.-.....+ +..++=...++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~----~~-----~--------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPA----AR-----I--------EHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCC----Cc-----h--------HHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 445556789999999843211 10 0 112234566788999988643221112 22344556778
Q ss_pred ccCCcEEE
Q 022660 185 GSDGKLIA 192 (294)
Q Consensus 185 ~~~G~il~ 192 (294)
+|+|+++.
T Consensus 214 ~p~G~il~ 221 (253)
T cd07583 214 DPWGEVLA 221 (253)
T ss_pred CCCchhhe
Confidence 99998764
No 75
>PLN02504 nitrilase
Probab=56.06 E-value=50 Score=31.18 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=39.7
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeee---------------e
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPE---------------R 172 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~---------------~ 172 (294)
+..+.+||||++.|=.+. . ..+...++.-|.+++++++.-.... .
T Consensus 196 r~la~~Gadii~~p~~~~-----~---------------~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~ 255 (346)
T PLN02504 196 TAMYAKGIEIYCAPTADS-----R---------------ETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGT 255 (346)
T ss_pred HHHHHCCCeEEEECCCCC-----c---------------hhHHHHHHHHHHccCcEEEEecccccccccCcccccccccc
Confidence 334578999999984320 0 1234456667999999987542210 0
Q ss_pred e-----C-CeeEEEEEEEccCCcEEE
Q 022660 173 S-----G-DRLYNTCCVFGSDGKLIA 192 (294)
Q Consensus 173 ~-----~-~~~yNsa~vi~~~G~il~ 192 (294)
+ + -.++-...+++|+|+++.
T Consensus 256 ~~~~~~~~~~~~G~S~IvdP~G~vla 281 (346)
T PLN02504 256 EEDLTPDSIVCAGGSVIISPSGTVLA 281 (346)
T ss_pred cccccccccccCcceEEECCCCCEec
Confidence 0 1 123456788999998863
No 76
>PLN02747 N-carbamolyputrescine amidase
Probab=55.78 E-value=1.1e+02 Score=27.83 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeee------eC---Cee
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER------SG---DRL 177 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~------~~---~~~ 177 (294)
.+..+.+|+|||+.|=.+.+.. .+..... .......++..|.+++++++.-...-. .+ ..+
T Consensus 165 ~r~~~~~Ga~lil~ps~~~~~~-~~~~~~~---------~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~ 234 (296)
T PLN02747 165 ARAMVLQGAEVLLYPTAIGSEP-QDPGLDS---------RDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITF 234 (296)
T ss_pred HHHHHHCCCCEEEEeCccCCCC-cccccch---------HHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceE
Confidence 3445678999999987653211 0000000 012344567778899998865422111 11 234
Q ss_pred EEEEEEEccCCcEEE
Q 022660 178 YNTCCVFGSDGKLIA 192 (294)
Q Consensus 178 yNsa~vi~~~G~il~ 192 (294)
+=.+.+++|+|+++.
T Consensus 235 ~G~S~i~~p~G~vl~ 249 (296)
T PLN02747 235 YGGSFIAGPTGEIVA 249 (296)
T ss_pred eeeeEEECCCCCEee
Confidence 455677899999864
No 77
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.78 E-value=46 Score=29.87 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
.+..++.+++.++.|++.|++.|+++-.. .++. .+.....+.+. ..++.+.+.|+++|+.|.+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~~-~~~~~~~~~~~------~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYD-VYYE-QANNETRRRFI------DGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcc-cccc-ccHHHHHHHHH------HHHHHHHHHHHHhCCEEEE
Confidence 35668889999999999999999985210 0111 11111111111 3667888899999997765
No 78
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=55.41 E-value=56 Score=29.23 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=44.2
Q ss_pred HHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC--CeeEEEEEEEccCC
Q 022660 111 AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDG 188 (294)
Q Consensus 111 ~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G 188 (294)
+..||++|+.|-.+..... . ......++.-|-+++++++.......++ ...+-..++++|+|
T Consensus 163 a~~Gaeii~~p~a~~~~~~------~----------~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG------L----------DHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCccc------H----------HHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 4559999999988755432 0 1233346667889999988653322222 45778889999999
Q ss_pred cEEE
Q 022660 189 KLIA 192 (294)
Q Consensus 189 ~il~ 192 (294)
+++.
T Consensus 227 ~v~~ 230 (274)
T COG0388 227 EVLA 230 (274)
T ss_pred cEEe
Confidence 8654
No 79
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=53.44 E-value=32 Score=26.64 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 100 ~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
.....+.+.+..+.|--+++|||...... ... .+...-...++.+.++.|+
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~~~--~~~-------------~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTRSRS--GEL-------------LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S---B----B-----------------HHHHHHHHHH-----
T ss_pred cchhHHHHHHHhhhcceeeecCCccCcCC--Ccc-------------CCccHHHHHHHHHcCCccc
Confidence 34444445555666556999999954421 000 1244456677777777665
No 80
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=53.11 E-value=60 Score=27.28 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 95 d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
+.+...+.+.++++.+.+.++++|++-=.....+.... ...+.+ ..+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~--~~~~~~------~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG--KVEDTL------GDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC--cccccc------hhHHHHHHHHHHHhCCCEE
Confidence 45566677777777777889998886211111111110 011111 3578899999999998775
No 81
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=52.55 E-value=64 Score=28.04 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=43.2
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-CCeeEEEEEEEcc
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGS 186 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~ 186 (294)
+.+...|+|+|+.|=...... . ......++..|.+++++++.-+..... +..++-...+++|
T Consensus 153 ~~~~~~g~dli~~ps~~~~~~--------~---------~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~p 215 (253)
T cd07197 153 RELALKGADIILVPAAWPTAR--------R---------EHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVDP 215 (253)
T ss_pred HHHHHCCCcEEEECCcCCCcc--------h---------HHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEECC
Confidence 334678999999987753221 0 125556777899999988764222111 2345556777899
Q ss_pred CCcEEE
Q 022660 187 DGKLIA 192 (294)
Q Consensus 187 ~G~il~ 192 (294)
+|+++.
T Consensus 216 ~G~~~~ 221 (253)
T cd07197 216 DGEVLA 221 (253)
T ss_pred CCceee
Confidence 998763
No 82
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=51.76 E-value=44 Score=29.74 Aligned_cols=59 Identities=17% Similarity=0.040 Sum_probs=36.4
Q ss_pred eEEEeeeccCcCcHHHHHHHHCCCeEEEE--cCCCCCCCCH--HHHHHHHHHHHHHhCCeeEee
Q 022660 231 RIGIGICYDIRFQELAMIYGARGAHLICY--PGAFNMTTGP--LHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 231 rigi~ICyD~~fpe~~r~la~~Gadlil~--ps~~~~~~~~--~~~~~l~~~RAiEn~~~vv~a 290 (294)
-=++++|-|. .+++.++..++|+|+|+. |.-|...... .....-...++++|++.|.++
T Consensus 32 v~~V~~~ld~-t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 32 VKKVLVALDA-TPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp ESEEEEESS--SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEE
T ss_pred cCEEEEEEeC-CHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEe
Confidence 3467888888 577888888899999996 6655322111 112333467788999998875
No 83
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=50.78 E-value=41 Score=25.11 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 98 ~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
.+.+.+.+.++ +.+.|..+++|||....... . . .++..-+..+|++.+..|+
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~--~---~----------~~~~~g~~~la~~~~~~v~ 111 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPG--K---L----------LPFKKGAARLALEAGVPIV 111 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCC--C---c----------CCCcccHHHHHHHcCCCEE
Confidence 34444554444 55679999999999754322 0 0 0133346778888876554
No 84
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=49.16 E-value=96 Score=27.53 Aligned_cols=71 Identities=10% Similarity=-0.030 Sum_probs=44.6
Q ss_pred CCCeEEEeCCceEEEeeeccCcC-----------------------------cHHHHH--HHHCCCeEEEEcCCCCCC--
Q 022660 220 ETPTIVDTDVGRIGIGICYDIRF-----------------------------QELAMI--YGARGAHLICYPGAFNMT-- 266 (294)
Q Consensus 220 ~~~~v~~~~~grigi~ICyD~~f-----------------------------pe~~r~--la~~Gadlil~ps~~~~~-- 266 (294)
..+.+++.++.|||++=|.+... ..+.+. .+++++|++++...|+..
T Consensus 119 ~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~ 198 (250)
T PF09587_consen 119 RRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYE 198 (250)
T ss_pred cCeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 35688888899999988776641 112222 234789999998888643
Q ss_pred CCHHHHHHHHHHHHHHhCCeeEee
Q 022660 267 TGPLHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 267 ~~~~~~~~l~~~RAiEn~~~vv~a 290 (294)
..+..+..-.-.+.++.|.-+|..
T Consensus 199 ~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 199 NYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEe
Confidence 223333333344556788777654
No 85
>PRK13981 NAD synthetase; Provisional
Probab=47.70 E-value=88 Score=31.34 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=42.6
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCe-eEEEEEEEc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFG 185 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~-~yNsa~vi~ 185 (294)
.+..+..|+|+|+.|=.+ +|..... ......++.-|.+++++++.-.....+++. +.-...+++
T Consensus 154 ~r~la~~Gadlil~psa~--~~~~~~~-------------~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~d 218 (540)
T PRK13981 154 AETLAEAGAELLLVPNAS--PYHRGKP-------------DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLN 218 (540)
T ss_pred HHHHHHCCCcEEEEcCCC--cccCCcH-------------HHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEEC
Confidence 344567899999998332 2221110 113346788899999988754222122222 335567789
Q ss_pred cCCcEEEE
Q 022660 186 SDGKLIAK 193 (294)
Q Consensus 186 ~~G~il~~ 193 (294)
|+|+++..
T Consensus 219 p~G~il~~ 226 (540)
T PRK13981 219 ADGELAAR 226 (540)
T ss_pred CCCCEeee
Confidence 99988643
No 86
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=47.45 E-value=86 Score=27.93 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC--CeeEEEEEEEccCCcE
Q 022660 113 KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKL 190 (294)
Q Consensus 113 ~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~i 190 (294)
.|+|+|+.|=.+... . . ......++.-|.|++++++.-.....++ ..++-...+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~----~----~---------~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAP----R----S---------LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCC----c----h---------HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 589999998654211 0 0 1133345668889999987643222221 2344567789999998
Q ss_pred EEE
Q 022660 191 IAK 193 (294)
Q Consensus 191 l~~ 193 (294)
+..
T Consensus 217 l~~ 219 (256)
T PRK10438 217 IAT 219 (256)
T ss_pred EEE
Confidence 753
No 87
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=47.10 E-value=62 Score=31.09 Aligned_cols=58 Identities=17% Similarity=0.000 Sum_probs=38.5
Q ss_pred EeeeccCcCcHHHHHHHHCCCeEEEEcCCC-------------------CCCCCHHHHHHHHH----HHHHHhCCeeEee
Q 022660 234 IGICYDIRFQELAMIYGARGAHLICYPGAF-------------------NMTTGPLHWELLQR----ARATDNQVLPHSP 290 (294)
Q Consensus 234 i~ICyD~~fpe~~r~la~~Gadlil~ps~~-------------------~~~~~~~~~~~l~~----~RAiEn~~~vv~a 290 (294)
++|| |...++-..+++++ +.+|+++..- -+..|.-+|....+ -+|.|+|+|||+|
T Consensus 66 i~i~-D~~n~~Sl~emak~-~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 66 ILIA-DSANEASLDEMAKQ-ARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred EEEe-cCCCHHHHHHHHhh-hEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 5555 67778888888765 8999987641 01123345543322 4689999999999
Q ss_pred ccc
Q 022660 291 FVF 293 (294)
Q Consensus 291 n~~ 293 (294)
..|
T Consensus 144 CGf 146 (423)
T KOG2733|consen 144 CGF 146 (423)
T ss_pred ccc
Confidence 865
No 88
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=44.42 E-value=85 Score=21.55 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 102 HARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 102 ~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
..+++++.|++.|.+.|.+=|..... -...+.+++++.++.++.|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~---------------------~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLF---------------------GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCccc---------------------CHHHHHHHHHHcCCeEEEE
Confidence 46788999999999999998875221 1124567777899999988
No 89
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=43.63 E-value=1.3e+02 Score=26.58 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC-CeeEEEEEEEcc
Q 022660 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVFGS 186 (294)
Q Consensus 108 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi~~ 186 (294)
+....+|+|+|+.|=.+..+.. +. ..+..-|.+++++++.....-.++ ...+-...+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~~~~~------------------~~-~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~p 216 (258)
T cd07578 156 RLLALGGADVICHISNWLAERT------------------PA-PYWINRAFENGCYLIESNRWGLERGVQFSGGSCIIEP 216 (258)
T ss_pred HHHHHcCCCEEEEcCCCCCCCC------------------cc-hHHHHhhhcCCeEEEEecceeccCCcceeeEEEEECC
Confidence 3445789999999855322110 00 112345778898877542211122 234456688999
Q ss_pred CCcEEE
Q 022660 187 DGKLIA 192 (294)
Q Consensus 187 ~G~il~ 192 (294)
+|+++.
T Consensus 217 ~G~il~ 222 (258)
T cd07578 217 DGTIQA 222 (258)
T ss_pred CCcEee
Confidence 998763
No 90
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=43.08 E-value=56 Score=29.33 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
.+..++.+.+.++.|.+.|++.|++.-....+ .......+.+ -..++.+.+.|+++++.+.+=
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~------~~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRV------IEALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHH------HHHHHHHHHhccCCCCEEEEe
Confidence 56778999999999999999998874332211 1111111111 135566677777889988753
No 91
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=41.75 E-value=1.1e+02 Score=25.66 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEee
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (294)
+...+..++.++..++.|.|-||+--....+.....-......... .....++.+.++|.++|+.|.+|.
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~--~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYM--PPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccC--CcccHHHHHHHHHHHcCCEEEEeC
Confidence 3445677888888899999999998766555332111001111111 123688999999999999999994
No 92
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=41.07 E-value=1.1e+02 Score=25.32 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
+..++.+.+.++.|...|++.++++=...............+.+ -..++.+.+.|+++|+.+.+=
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL------AENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH------HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH------HHHHHHHHhhhhhhcceEEEe
Confidence 45588889999999999999999883310001111111111111 147788888999999887653
No 93
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.17 E-value=1.7e+02 Score=23.64 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=42.0
Q ss_pred EEEEEecccc-----ccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (294)
Q Consensus 84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (294)
.+.+++.... .+.+...+.++++++.+.+ .++.+|+..=.-..+ ........+ ..+.+.++++
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~----~~~~~~~~~------~~~n~~l~~~ 119 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGE----LKSIPNEQI------EELNRQLAQL 119 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCc----cCcCCHHHH------HHHHHHHHHH
Confidence 4556655432 3456666777777777766 789999864221111 111111222 1467788999
Q ss_pred HHhcCcEEE
Q 022660 157 ARLLKITIV 165 (294)
Q Consensus 157 A~~~~i~Iv 165 (294)
|++.++.++
T Consensus 120 a~~~~~~~i 128 (169)
T cd01828 120 AQQEGVTFL 128 (169)
T ss_pred HHHCCCEEE
Confidence 999888765
No 94
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=40.08 E-value=1.1e+02 Score=27.77 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeee-------------
Q 022660 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER------------- 172 (294)
Q Consensus 106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~------------- 172 (294)
..+.++.+|||||+-| +..++. .. .. .......++.-|.+++++++.-.....
T Consensus 165 ~~r~~a~~ga~ii~~~--~~~~~~-~~----~~-------~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~ 230 (297)
T cd07564 165 ARYALYAQGEQIHVAP--WPDFSP-YY----LS-------REAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEE 230 (297)
T ss_pred HHHHHHHCCCeEEEEC--CCCccc-cc----cc-------HHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccc
Confidence 4444568899999864 211111 00 00 012444566788999999886321110
Q ss_pred ---eCCeeEEEEEEEccCCcEEE
Q 022660 173 ---SGDRLYNTCCVFGSDGKLIA 192 (294)
Q Consensus 173 ---~~~~~yNsa~vi~~~G~il~ 192 (294)
++...+-...+++|+|+++.
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il~ 253 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVLA 253 (297)
T ss_pred cccccccCCCceEEECCCCCeec
Confidence 11224456778899998863
No 95
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=39.89 E-value=94 Score=27.83 Aligned_cols=57 Identities=16% Similarity=-0.068 Sum_probs=36.4
Q ss_pred EEEeeeccCcCcHHHHHHHHCCCeEEEE--cCCCCCCCC--HHHHHHHHHHHHHHhCCeeEee
Q 022660 232 IGIGICYDIRFQELAMIYGARGAHLICY--PGAFNMTTG--PLHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 232 igi~ICyD~~fpe~~r~la~~Gadlil~--ps~~~~~~~--~~~~~~l~~~RAiEn~~~vv~a 290 (294)
=++++|-|. .+++.+...++|+|+|+. |.-|..... ......- ...+++|++.|.++
T Consensus 37 ~~I~~alD~-t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~vy~~ 97 (249)
T TIGR00486 37 KKVVVAVDA-SESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDISLYSA 97 (249)
T ss_pred CEEEEEecC-CHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCeEEEe
Confidence 357778887 467778888899999995 555532111 0111111 44588999988875
No 96
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=38.91 E-value=88 Score=28.73 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=46.9
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEcc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (294)
+..|...++++++|=|-. +|... ... ..+.+.|++++++.+.+|++.++...+-..+....+++.
T Consensus 147 ia~aL~~~P~lliLDEPt-~GLDp-----~~~--------~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~- 211 (293)
T COG1131 147 IALALLHDPELLILDEPT-SGLDP-----ESR--------REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN- 211 (293)
T ss_pred HHHHHhcCCCEEEECCCC-cCCCH-----HHH--------HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe-
Confidence 334566788999998853 33211 000 247889999999988888887665554455566666664
Q ss_pred CCcEEEE
Q 022660 187 DGKLIAK 193 (294)
Q Consensus 187 ~G~il~~ 193 (294)
+|+++..
T Consensus 212 ~G~~~~~ 218 (293)
T COG1131 212 DGKIIAE 218 (293)
T ss_pred CCEEEEe
Confidence 8887644
No 97
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=38.55 E-value=2.1e+02 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHhcCcEEEEeeeee-eeCCeeEEEEEEEccCCcEEE
Q 022660 154 SEVARLLKITIVGGSIPE-RSGDRLYNTCCVFGSDGKLIA 192 (294)
Q Consensus 154 ~~lA~~~~i~Iv~Gs~~~-~~~~~~yNsa~vi~~~G~il~ 192 (294)
+.-|.+++++++..+..- .++..++-...+++|+|+++.
T Consensus 220 ~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla 259 (302)
T cd07569 220 QAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVA 259 (302)
T ss_pred hhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEE
Confidence 334678899887643211 123356666778999999864
No 98
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=38.16 E-value=1.2e+02 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCCC
Q 022660 101 AHARRAIEEAAEKGAKLILLPEIWNSP 127 (294)
Q Consensus 101 ~~i~~~i~~A~~~gadLVVfPE~~l~g 127 (294)
..+.+.+.++.+.|-.++||||..-+.
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs~ 114 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRSR 114 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCC
Confidence 445566777788899999999997654
No 99
>PRK10799 metal-binding protein; Provisional
Probab=37.96 E-value=1.2e+02 Score=27.18 Aligned_cols=57 Identities=9% Similarity=-0.235 Sum_probs=36.7
Q ss_pred EEeeeccCcCcHHHHHHHHCCCeEEEE--cCCCCCCCCH-HHHHHHHHHHHHHhCCeeEee
Q 022660 233 GIGICYDIRFQELAMIYGARGAHLICY--PGAFNMTTGP-LHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 233 gi~ICyD~~fpe~~r~la~~Gadlil~--ps~~~~~~~~-~~~~~l~~~RAiEn~~~vv~a 290 (294)
++++|-|. .+++.+....+|+|+|+. |.-|...... .....-...+++++++.|+++
T Consensus 37 ~I~~alD~-t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 37 KIVTGVTA-SQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW 96 (247)
T ss_pred EEEEEeCC-CHHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEE
Confidence 67888888 467778888999999995 4434321111 011222345788999888765
No 100
>PRK13287 amiF formamidase; Provisional
Probab=37.92 E-value=2.6e+02 Score=26.19 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCC-eeEEEEEEEc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFG 185 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~-~~yNsa~vi~ 185 (294)
.+..+.+|||||+-|=.+ .... . +...-..+.-|-+++++++.-...-.++. .++=...+++
T Consensus 174 ~R~~a~~GAeill~~s~~----~~~~----~---------~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~G~S~Iid 236 (333)
T PRK13287 174 AREAAYKGANVMIRISGY----STQV----R---------EQWILTNRSNAWQNLMYTASVNLAGYDGVFYYFGEGQVCN 236 (333)
T ss_pred HHHHHHCCCeEEEECCcc----CCcc----h---------hHHHHHHHHHHHhCCcEEEEEeccccCCCeeeeeeeEEEC
Confidence 344557899999987432 2110 0 01112234456788888765322211221 2345567899
Q ss_pred cCCcEEEE
Q 022660 186 SDGKLIAK 193 (294)
Q Consensus 186 ~~G~il~~ 193 (294)
|+|+++..
T Consensus 237 p~G~vl~~ 244 (333)
T PRK13287 237 FDGTTLVQ 244 (333)
T ss_pred CCCcEEEe
Confidence 99998754
No 101
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=37.73 E-value=25 Score=32.66 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=32.6
Q ss_pred HhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCC
Q 022660 158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFD 201 (294)
Q Consensus 158 ~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~ 201 (294)
+.++...+.+ ...++...||+..|||-+|..+.+|+|.+++.
T Consensus 110 k~yns~~~~~--~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 110 KLYNSCADSS--CPGDGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred cccCcccccC--CCcchhheeeeeEEeccCCccceeeeeeeccC
Confidence 4555555544 33456789999999999999999999999876
No 102
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=37.69 E-value=1.2e+02 Score=23.69 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhc-CcEEEEee
Q 022660 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL-KITIVGGS 168 (294)
Q Consensus 100 ~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~-~i~Iv~Gs 168 (294)
-+++...+++..+.|+|.|.|.=.-..+.... .-|..+.+.+..++. ++.||.|+
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~--------------~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG--------------PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC--------------CCCCHHHHHHHHHHHhCCCEeeec
Confidence 34566666677799999999987765543111 013455566655554 99999885
No 103
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=37.69 E-value=78 Score=26.80 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 98 RNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 98 ~n~~~i~~~i~~A~~~--gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
...+.+.+.++...+. +..+++|||..-.- ....+...++|++.+..++-
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~-------------------~~~~~~~~~~a~k~~~p~l~ 137 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT-------------------EEKKERSQEFAEKNGLPPLK 137 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccCCC-------------------HHHHHHHHHHHHHcCCCCcc
Confidence 3345566666665554 78999999996321 12334445788888876653
No 104
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=37.66 E-value=77 Score=27.31 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 98 ~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
.+.+.+++.. ++.++|-.++||||...+-.... +.+. ...++..-...+|.+.++.|+-
T Consensus 83 ~~~~~~~~~~-~~L~~G~~l~IFPEGtrs~~~~~-~g~~--------~~~~fk~G~~~lA~~~~~pIvP 141 (210)
T cd07986 83 KNRESLREAL-RHLKNGGALIIFPAGRVSTASPP-FGRV--------SDRPWNPFVARLARKAKAPVVP 141 (210)
T ss_pred hhHHHHHHHH-HHHhCCCEEEEECCccccccccc-CCcc--------ccCCccHHHHHHHHHHCCCEEE
Confidence 4444444443 44567889999999976543210 0000 0013455678899999998864
No 105
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=37.66 E-value=2.4e+02 Score=28.18 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=40.2
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.++|..++..-...+....+.+.|+|+|.+..+-++ ....|+.+...|..-..+.|++-|+
T Consensus 230 L~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~--s~~~~~~i~~ik~~~~~~~v~aG~V 290 (495)
T PTZ00314 230 LLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGN--SIYQIDMIKKLKSNYPHVDIIAGNV 290 (495)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC--chHHHHHHHHHHhhCCCceEEECCc
Confidence 477888876444467778899999999998775332 3445666666665433566665454
No 106
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=37.23 E-value=1.1e+02 Score=27.79 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEE
Q 022660 101 AHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNT 180 (294)
Q Consensus 101 ~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNs 180 (294)
++-+-+|..|..++++++++=|-... -| .... -..++.+++++++.+++++.-.+.....-++-..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~----LD---i~~Q-------~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSH----LD---IAHQ-------IEVLELLRDLNREKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccc----cC---HHHH-------HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 45556788888999999999996422 11 1111 1488899999999999888753322222233344
Q ss_pred EEEEccCCcEE
Q 022660 181 CCVFGSDGKLI 191 (294)
Q Consensus 181 a~vi~~~G~il 191 (294)
.+++ .+|++.
T Consensus 209 ~i~l-k~G~i~ 218 (258)
T COG1120 209 LILL-KDGKIV 218 (258)
T ss_pred EEEE-ECCeEE
Confidence 4444 477764
No 107
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=35.76 E-value=1.4e+02 Score=28.36 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=39.0
Q ss_pred CCceEEEeeeccCcCcHHHH--------HHHHCCCeEEEEcCCCCCCCCHHH--HHHHHHHHHHHhCCeeEee
Q 022660 228 DVGRIGIGICYDIRFQELAM--------IYGARGAHLICYPGAFNMTTGPLH--WELLQRARATDNQVLPHSP 290 (294)
Q Consensus 228 ~~grigi~ICyD~~fpe~~r--------~la~~Gadlil~ps~~~~~~~~~~--~~~l~~~RAiEn~~~vv~a 290 (294)
++--++.+||.|..|-|-.. .+.+..+|+++.--+|+.. .+- --.++++-.-+.++++|.+
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnag--rYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAG--RYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCc--hHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34579999999999954332 2345789999986666643 221 2233444455678887765
No 108
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=35.66 E-value=2.2e+02 Score=26.72 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=44.4
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCH--HHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGP--LHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~--~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.++.++-||=...+++.+.+...|++=|+.-+. +...-+ ..|.. .-.++.+.|+.||.+++
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~-G~Gn~p~~~~~~~-~l~~~~~~Gi~VV~~Sr 272 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSY-GVGNAPQNPALLQ-ELKEASERGIVVVNLTQ 272 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccC-CCCCCCCCHHHHH-HHHHHHHCCCEEEEeCC
Confidence 478899899999999999988889888777554 222112 23433 35578899999998865
No 109
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.37 E-value=1.7e+02 Score=23.97 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=42.8
Q ss_pred EEEEEecccc-----ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC-ccchhhhhccCCCCcHHHHHHHHHH
Q 022660 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FPVYAEDIDAGGDASPSTAMLSEVA 157 (294)
Q Consensus 84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~-~~~~~~~~~~~~~~~~~~~~l~~lA 157 (294)
.+.+++.... .+.+.-.+.++++++.+.+.++.+|++--.....+.... .....+.+ ..+-+.++++|
T Consensus 61 d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~------~~~n~~~~~~a 134 (183)
T cd04501 61 AVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKL------KSLNRWLKDYA 134 (183)
T ss_pred CEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHH------HHHHHHHHHHH
Confidence 4556666432 245666677777777778889998886321111111000 01111222 24677899999
Q ss_pred HhcCcEEE
Q 022660 158 RLLKITIV 165 (294)
Q Consensus 158 ~~~~i~Iv 165 (294)
++.++.++
T Consensus 135 ~~~~v~~v 142 (183)
T cd04501 135 RENGLLFL 142 (183)
T ss_pred HHcCCCEE
Confidence 99887654
No 110
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=35.27 E-value=2.1e+02 Score=22.07 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=48.8
Q ss_pred EEEEEecc-cc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 84 KVGLCQLS-VT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 84 rValvQ~~-v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
|+.++.+- .+ ..+...+..+.++.++..+.++.+|...- ..+.. ....+.+++.+++++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~~----------------~~~~~~~~~~~~~~~ 84 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFAF----------------ERDLANVKSAVLRYG 84 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc---Ccccc----------------ccCHHHHHHHHHHcC
Confidence 44455553 23 45667778888887776666777665421 00000 013445677777777
Q ss_pred cEEEEeeeeee-----eCCeeEEEEEEEccCCcEEEE
Q 022660 162 ITIVGGSIPER-----SGDRLYNTCCVFGSDGKLIAK 193 (294)
Q Consensus 162 i~Iv~Gs~~~~-----~~~~~yNsa~vi~~~G~il~~ 193 (294)
+..-...-... -+-...-+.++|+++|+++..
T Consensus 85 ~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 85 ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 64322111110 011234578999999988643
No 111
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=33.74 E-value=96 Score=25.70 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=25.1
Q ss_pred CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 114 GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 114 gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
|..++||||..-+.- +++..-...+|.+.++.|+-
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEEE
Confidence 457999999975531 12455678889999988764
No 112
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=33.33 E-value=1e+02 Score=28.71 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEee
Q 022660 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (294)
.+...+.+...++..++.|.+.|| |....|+. .-.+.|++++++.|+.||.++
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~G------------------Rd~~~l~~is~~tGv~II~~T 85 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGLG------------------RDVEALREISRRTGVNIIAST 85 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGGT------------------B-HHHHHHHHHHHT-EEEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCcccC------------------cCHHHHHHHHHHhCCeEEEeC
Confidence 345677888888888899999999 87766543 234678999999999999874
No 113
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=32.99 E-value=1.3e+02 Score=23.51 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHHHhcCcEEEEeeeeeeeCCee---EEEEEEEccCCcEEEEEe
Q 022660 152 MLSEVARLLKITIVGGSIPERSGDRL---YNTCCVFGSDGKLIAKHR 195 (294)
Q Consensus 152 ~l~~lA~~~~i~Iv~Gs~~~~~~~~~---yNsa~vi~~~G~il~~y~ 195 (294)
....+++.+++...-. ...+.+.. -.+.++++++|+++..|+
T Consensus 97 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 97 EIEALAKAFGVYYEKV--PEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHHhcEEEEec--CCCCCceeEeccceEEEECCCCCEEEeec
Confidence 3456677777654321 00001111 236899999999987775
No 114
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=32.58 E-value=95 Score=28.35 Aligned_cols=98 Identities=13% Similarity=0.201 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc---chhhhhcc--CCCCcHHHHHHHHHHHhcCcEEEEeeeee
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP---VYAEDIDA--GGDASPSTAMLSEVARLLKITIVGGSIPE 171 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~---~~~~~~~~--~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~ 171 (294)
-+-++++...+++..+ ...+-+.|=+-..-...+... +|...... ... --+.+.+.+.|+++.++...| ++
T Consensus 156 PdELeKm~~~Vd~i~~-~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGL-TGT~eqvk~vak~yRVYfs~g--p~ 231 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEA-KPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGL-TGTTEQVKQVAKKYRVYFSTG--PK 231 (280)
T ss_pred hHHHHHHHHHHHHHhc-cCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcc-cCCHHHHHHHHHHhEEeeccC--CC
Confidence 4458888888887533 333332254332222222221 22111110 000 025688999999999999887 33
Q ss_pred eeCCe----eEEEEEEEccCCcEEEEEeecc
Q 022660 172 RSGDR----LYNTCCVFGSDGKLIAKHRKIH 198 (294)
Q Consensus 172 ~~~~~----~yNsa~vi~~~G~il~~y~K~~ 198 (294)
.++.. .---.++++|+|+.+..|-+-+
T Consensus 232 d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 232 DEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 32221 2234678999999886665544
No 115
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.41 E-value=1.6e+02 Score=26.11 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
.+...+.+++.++.|.+-|+..|+.+= |...... ....+.+ ...+..+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL------VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 445567788999999999999887642 2221111 1111111 13667778888899988765
No 116
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=31.44 E-value=77 Score=27.58 Aligned_cols=52 Identities=17% Similarity=0.028 Sum_probs=36.4
Q ss_pred EEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEee
Q 022660 232 IGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 232 igi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~a 290 (294)
.++.||-|.+.|++.+...+.|+++|...+.+.. .+.... .+.++++.+|.-
T Consensus 71 ~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~--~~~~~~-----l~a~~~~~vV~m 122 (210)
T PF00809_consen 71 PDVPLSIDTFNPEVAEAALKAGADIINDISGFED--DPEMLP-----LAAEYGAPVVLM 122 (210)
T ss_dssp TTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSS--STTHHH-----HHHHHTSEEEEE
T ss_pred CCeEEEEECCCHHHHHHHHHcCcceEEecccccc--cchhhh-----hhhcCCCEEEEE
Confidence 4567899999999999887789999998887432 112222 245677777653
No 117
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=31.26 E-value=2.1e+02 Score=23.37 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 95 d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
+.++-.+.+..+++++...++++|++.-...... .... ...+.+ ..+.+.++++|+++++.++
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~--~~~~~~~~~~~------~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVL--EPFRRRVRARL------AAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEecCCCcccc--chhHHHHHHHH------HHHHHHHHHHHHHcCCEEE
Confidence 3455566667777777778999888753222011 1110 111111 2467789999999887654
No 118
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=31.07 E-value=2.2e+02 Score=26.58 Aligned_cols=61 Identities=15% Similarity=-0.001 Sum_probs=44.9
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.|+.++-+|-...+++.+.+...|++=|+.-+. +...-+..|... -.++.+.|+.||.+++
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~-G~Gn~p~~~~~~-l~~a~~~gipVV~~sq 272 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGT-GAGNVPPDLLEA-LKEALERGIPVVRTSR 272 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEee-CCCCCCHHHHHH-HHHHHHCCCEEEEecc
Confidence 589999999999999999888888888876554 222122344443 4577899999999865
No 119
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=30.83 E-value=1.6e+02 Score=24.21 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=29.7
Q ss_pred HHHHHHCCCeEEEEcCCCCCCC--------CH-----------HHHHHHHHHHHHHhCCeeEee
Q 022660 246 AMIYGARGAHLICYPGAFNMTT--------GP-----------LHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 246 ~r~la~~Gadlil~ps~~~~~~--------~~-----------~~~~~l~~~RAiEn~~~vv~a 290 (294)
.+..+++|+|+|+.|-.+.... .. ..+....+..|.+++++++..
T Consensus 27 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G 90 (186)
T PF00795_consen 27 IEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAG 90 (186)
T ss_dssp HHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccc
Confidence 3455678999999998854422 11 123334567788999998765
No 120
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=30.79 E-value=2.2e+02 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=44.7
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
-++.++-||=...+++.+.+...|++-|+.-+. +...-+..|... -.+|+++|++||.+.+
T Consensus 210 ~~V~il~~~pG~~~~~l~~~~~~g~~GiVl~~~-G~Gn~p~~~~~~-l~~a~~~gi~VV~~Sq 270 (323)
T cd00411 210 PKVGILYLYPGISAEAVRAFLRAGYKGIVLAGY-GAGNVPTDLIDE-LEEAAERGVVVVNSTQ 270 (323)
T ss_pred CCEEEEEECCCCCHHHHHHHHhCCCCEEEEEeE-CCCCCCHHHHHH-HHHHHHCCCEEEEecC
Confidence 478888899988899999888889888776554 222223345554 4478899999999865
No 121
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=30.60 E-value=1.7e+02 Score=24.66 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=39.8
Q ss_pred EEEEEecccc-----ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
.+.+++..+. .+.+...+.++++++++.+.+++++++.-. ++. . +..... ..+.+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~-~P~---~----~~~~~~-----~~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIR-LPA---N----YGRRYN-----EAFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEee-cCC---c----ccHHHH-----HHHHHHHHHHHH
Confidence 4556665542 245566677777777777778888876311 111 0 101110 125566888999
Q ss_pred hcCcEEE
Q 022660 159 LLKITIV 165 (294)
Q Consensus 159 ~~~i~Iv 165 (294)
++++.++
T Consensus 140 ~~~v~~i 146 (191)
T PRK10528 140 EFDIPLL 146 (191)
T ss_pred HhCCCcc
Confidence 9987654
No 122
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=30.41 E-value=2.3e+02 Score=22.91 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=40.1
Q ss_pred EEEEEecccc-----ccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (294)
Q Consensus 84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (294)
++.+++.... .+.+...+.++++++.+.+ .++.++++.-........ ......+.+ ..+-+.++++
T Consensus 53 d~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~-~~~~~~~~~------~~~n~~l~~~ 125 (174)
T cd01841 53 SKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE-IKTRSNTRI------QRLNDAIKEL 125 (174)
T ss_pred CEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-cccCCHHHH------HHHHHHHHHH
Confidence 4556666532 2455556666666666655 367777754222111110 000111222 2477889999
Q ss_pred HHhcCcEEE
Q 022660 157 ARLLKITIV 165 (294)
Q Consensus 157 A~~~~i~Iv 165 (294)
|+++++.++
T Consensus 126 a~~~~~~~i 134 (174)
T cd01841 126 APELGVTFI 134 (174)
T ss_pred HHHCCCEEE
Confidence 999997654
No 123
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=29.97 E-value=2.1e+02 Score=23.49 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=41.7
Q ss_pred ceEEEEEecccc----------ccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCCc-----------cchhh
Q 022660 82 KFKVGLCQLSVT----------ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSF-----------PVYAE 138 (294)
Q Consensus 82 ~~rValvQ~~v~----------~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~~-----------~~~~~ 138 (294)
+-.+.+++.... .+.+...+.++.+++++.+ .++.+|++-- +......+ ....+
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~---~~~~~~~~~~~~~~~~~~~~~~~~ 139 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITP---PPVDEEAWEKSLEDGGSQPGRTNE 139 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCC---CCCCHHHHhhhhccccCCccccHH
Confidence 346677776432 1245555666667776666 6888888721 11111110 01111
Q ss_pred hhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 139 DIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 139 ~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
.+ ..+.+.+.++|+++++.++
T Consensus 140 ~~------~~~~~~~~~~a~~~~~~~i 160 (199)
T cd01838 140 LL------KQYAEACVEVAEELGVPVI 160 (199)
T ss_pred HH------HHHHHHHHHHHHHhCCcEE
Confidence 11 1466678999999998765
No 124
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=29.87 E-value=1.9e+02 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=26.3
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
.+....+|+|+|+.|-.+.... .+. .....++.-|-+++++++..
T Consensus 162 ~r~l~~~ga~ii~~ps~~~~~~------~~~----------~~~~~~~arA~en~~~vv~a 206 (280)
T cd07574 162 ARALAEAGADLLLVPSCTDTRA------GYW----------RVRIGAQARALENQCYVVQS 206 (280)
T ss_pred HHHHHHcCCCEEEECCcCCccc------cHH----------HHHHHHHHHHHhhCceEEEe
Confidence 3445678999999985432110 000 12223456677889998754
No 125
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.63 E-value=2.6e+02 Score=22.52 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=40.3
Q ss_pred EEEEEecccc-----ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (294)
Q Consensus 84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 158 (294)
.+.+++.... .+.+...+.++++++.+.+.++++|+.-=...+.+. ..+ . ..+.+.++++|+
T Consensus 66 d~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~~----~~~---~------~~~~~~~~~~a~ 132 (177)
T cd01822 66 DLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAPPNYG----PRY---T------RRFAAIYPELAE 132 (177)
T ss_pred CEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccc----hHH---H------HHHHHHHHHHHH
Confidence 4555555432 235566677777777777779998885210001010 011 1 246778889999
Q ss_pred hcCcEEE
Q 022660 159 LLKITIV 165 (294)
Q Consensus 159 ~~~i~Iv 165 (294)
++++.++
T Consensus 133 ~~~~~~~ 139 (177)
T cd01822 133 EYGVPLV 139 (177)
T ss_pred HcCCcEe
Confidence 9997655
No 126
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.45 E-value=2.6e+02 Score=23.89 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEcc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (294)
+..|...+++++++=|-.. |... .. ...+.+.|.++.++.+..+++-++....-..+.+..+++..
T Consensus 142 la~al~~~p~lllLDEPt~-~LD~-----~~--------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03293 142 LARALAVDPDVLLLDEPFS-ALDA-----LT--------REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207 (220)
T ss_pred HHHHHHcCCCEEEECCCCC-CCCH-----HH--------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 3344556778888887532 2110 00 01355667777666666666544432222345566677754
Q ss_pred -CCcEEEE
Q 022660 187 -DGKLIAK 193 (294)
Q Consensus 187 -~G~il~~ 193 (294)
+|+++..
T Consensus 208 ~~G~i~~~ 215 (220)
T cd03293 208 RPGRIVAE 215 (220)
T ss_pred CCCEEEEE
Confidence 6877543
No 127
>PTZ00056 glutathione peroxidase; Provisional
Probab=29.35 E-value=3.6e+02 Score=23.06 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=24.1
Q ss_pred EEEEEeccc-c-ccHHHHHHHHHHHHHHHHHCCCcEEEcC
Q 022660 84 KVGLCQLSV-T-ADKERNIAHARRAIEEAAEKGAKLILLP 121 (294)
Q Consensus 84 rValvQ~~v-~-~d~~~n~~~i~~~i~~A~~~gadLVVfP 121 (294)
|+.++-.-. + .-+...+..+.++.++-.+.|..+|-++
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 344444432 2 4456667777777777667788888775
No 128
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=29.34 E-value=1.9e+02 Score=22.95 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=50.5
Q ss_pred eeCCeeEEEEEEEccCCcEEEEEeecccCCC-CCCCcccccc-ccCccCCCCCeEEEeCCceEEEeeeccCcCcHHHHHH
Q 022660 172 RSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI-DIPGKITFIE-SKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIY 249 (294)
Q Consensus 172 ~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~-~~P~~~~f~E-~~~f~~G~~~~v~~~~~grigi~ICyD~~fpe~~r~l 249 (294)
+-+++-|+.=+++.++|++ .+..|..-..- +-.......| ...|..|.+.-++ +-|-.|.+-- -++.-..+
T Consensus 13 ~i~Gk~f~~DIvi~~dG~v-~rr~K~lskrK~GTSHkl~~eEle~~lee~~E~ivv--GTG~~G~l~l----~~ea~e~~ 85 (121)
T COG1504 13 TIGGKDFEHDIVIRPDGKV-ERREKELSKRKYGTSHKLALEELEELLEEGPEVIVV--GTGQSGMLEL----SEEAREFF 85 (121)
T ss_pred EECCEeccccEEEecCCce-ehhhhhhhhhhcCcccccCHHHHHHHHhcCCcEEEE--ecCceeEEEe----CHHHHHHH
Confidence 5578999999999999987 45555322110 0000000011 1234444444444 4444444432 34555566
Q ss_pred HHCCCeEEEEcCCCCCCCCHHHHHHH
Q 022660 250 GARGAHLICYPGAFNMTTGPLHWELL 275 (294)
Q Consensus 250 a~~Gadlil~ps~~~~~~~~~~~~~l 275 (294)
.++|+++++.|+.+ .-..|..+
T Consensus 86 r~k~~~vi~~pT~E----Aikr~nel 107 (121)
T COG1504 86 RKKGCEVIELPTPE----AIKRYNEL 107 (121)
T ss_pred HhcCCeEEEeCCHH----HHHHHHHH
Confidence 77999999999853 23455554
No 129
>smart00642 Aamy Alpha-amylase domain.
Probab=29.00 E-value=2.5e+02 Score=23.42 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCC--------CCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 100 IAHARRAIEEAAEKGAKLILLPEIWN--------SPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 100 ~~~i~~~i~~A~~~gadLVVfPE~~l--------~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
++.+.+.+...++.|.+-|.++=..- .||...++........ ....++.|.+.|+++++.|++-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~G----t~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFG----TMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccC----CHHHHHHHHHHHHHCCCEEEEE
Confidence 45555555566788999997765432 2333333322221111 1256788888999999999875
No 130
>PRK12677 xylose isomerase; Provisional
Probab=28.42 E-value=3.6e+02 Score=25.87 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EcCCCCCCCCCC-CCccchhhhhccCCCCcHHHHHHHHHHHhc--CcEEEE
Q 022660 97 ERNIAHARRAIEEAAEKGAKLI-LLPEIWNSPYSH-DSFPVYAEDIDAGGDASPSTAMLSEVARLL--KITIVG 166 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLV-VfPE~~l~gy~~-~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~--~i~Iv~ 166 (294)
+..++.+++.|+.|.+.|++.| |||=.--+.|.. .++....+.. ...++.+.+.|++. ++.|.+
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~------~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRY------REAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHH------HHHHHHHHHHHHhcCCCcEEEE
Confidence 4458889999999999999854 554322111111 1111111111 13556677777774 477655
No 131
>PTZ00261 acyltransferase; Provisional
Probab=28.34 E-value=1.6e+02 Score=28.06 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 100 ~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
.+.+.+.+++..++|-.|+||||..-+--. +.+ .++-.-...+|.+.++.|+
T Consensus 201 ~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~g-g~L-------------~pFK~GaF~LAieagvPIV 252 (355)
T PTZ00261 201 QAQVQQAIDAHLRLGGSLAFFPEGAINKHP-QVL-------------QTFRYGTFATIIKHRMEVY 252 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcCCcCCC-CcC-------------CCCcHHHHHHHHHcCCCEE
Confidence 344555556667889999999999754211 001 1244446778888888874
No 132
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=27.78 E-value=2e+02 Score=24.82 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
....+.+++.+ ++.++|-.+++|||..-+.. ... .++..-...+|++.++.|+.-
T Consensus 106 ~~~~~~~~~~~-~~l~~g~~v~IfPEGtr~~~--~~~-------------~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 106 RSQLECLKRCM-ELLKKGASVFFFPEGTRSKD--GKL-------------AAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHHHHHH-HHHhCCCEEEEeCCCCCCCC--Ccc-------------cCchhhHHHHHHHcCCCEEEE
Confidence 34444444444 34567889999999964311 110 124445667888999887643
No 133
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=27.55 E-value=3.1e+02 Score=22.39 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHC-CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 107 IEEAAEK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 107 i~~A~~~-gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
+.++.+. |-.+++|||....... .. ..++..-...+|++.++.|+.-
T Consensus 93 ~~~~l~~~g~~v~ifPeG~~~~~~-~~-------------~~~~~~g~~~la~~~~~~IvPv 140 (187)
T cd06551 93 VARLLSKPGSVVWIFPEGTRTRRD-KR-------------PLQFKPGVAHLAEKAGVPIVPV 140 (187)
T ss_pred HHHHHhcCCcEEEEeCCcccCCCC-CC-------------cccccchHHHHHHHcCCcEEEE
Confidence 3334556 8999999999754321 00 0124455778888889888754
No 134
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.39 E-value=3e+02 Score=22.38 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=40.4
Q ss_pred EEEEEecccc------ccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCC-CccchhhhhccCCCCcHHHHHHH
Q 022660 84 KVGLCQLSVT------ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHD-SFPVYAEDIDAGGDASPSTAMLS 154 (294)
Q Consensus 84 rValvQ~~v~------~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~-~~~~~~~~~~~~~~~~~~~~~l~ 154 (294)
.+.+++.... .+.+...+.++.+++++.+ .++++|+..=... .+... ........+ ..+.+.+.
T Consensus 58 d~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~ 130 (189)
T cd01825 58 DLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPPDS-LQKTGAGRWRTPPGL------DAVIAAQR 130 (189)
T ss_pred CEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCch-hccCCCCCcccCCcH------HHHHHHHH
Confidence 4556666432 1345556666666666665 6899998652211 01100 000001111 24677899
Q ss_pred HHHHhcCcEEE
Q 022660 155 EVARLLKITIV 165 (294)
Q Consensus 155 ~lA~~~~i~Iv 165 (294)
++|+++++.++
T Consensus 131 ~~a~~~~v~~v 141 (189)
T cd01825 131 RVAKEEGIAFW 141 (189)
T ss_pred HHHHHcCCeEE
Confidence 99999997665
No 135
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=26.66 E-value=2.7e+02 Score=21.75 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=40.9
Q ss_pred EEEEEecccc----c-----cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-cchhhhhccCCCCcHHHHHH
Q 022660 84 KVGLCQLSVT----A-----DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-PVYAEDIDAGGDASPSTAML 153 (294)
Q Consensus 84 rValvQ~~v~----~-----d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~~~l 153 (294)
.+.+++.... + +.+...+.++++++.+...+ .++++--........... ......+ ..+.+.+
T Consensus 63 d~vvi~~G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 135 (179)
T PF13472_consen 63 DLVVISFGTNDVLNGDENDTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDPRDPKQDYLNRRI------DRYNQAI 135 (179)
T ss_dssp SEEEEE--HHHHCTCTTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSSTTTTHTTCHHHHH------HHHHHHH
T ss_pred CEEEEEcccccccccccccccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccccccccchhhhhhH------HHHHHHH
Confidence 5666766531 2 24556677777777776666 666665543332221110 1111112 2477788
Q ss_pred HHHHHhcCcEEE
Q 022660 154 SEVARLLKITIV 165 (294)
Q Consensus 154 ~~lA~~~~i~Iv 165 (294)
+++|+++++.++
T Consensus 136 ~~~a~~~~~~~i 147 (179)
T PF13472_consen 136 RELAKKYGVPFI 147 (179)
T ss_dssp HHHHHHCTEEEE
T ss_pred HHHHHHcCCEEE
Confidence 999999988765
No 136
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=26.54 E-value=2.7e+02 Score=24.64 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeee-eeeCCeeE
Q 022660 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP-ERSGDRLY 178 (294)
Q Consensus 100 ~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~-~~~~~~~y 178 (294)
++.+.+.+++++ .++|+||.==-| |..... .+.+....+.+.+-+.|+.+|+|..+ .-.+-..|
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~~~------------~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y 234 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHW--GIEYEN------------YPTPEQRELARALIDAGADIIIGHHPHVIQPVEIY 234 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEecc--CCCCCC------------CCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEE
Confidence 378888888887 789998853222 111111 12346667777777789999998554 22333455
Q ss_pred EEE
Q 022660 179 NTC 181 (294)
Q Consensus 179 Nsa 181 (294)
+..
T Consensus 235 ~~~ 237 (250)
T PF09587_consen 235 KGK 237 (250)
T ss_pred CCE
Confidence 333
No 137
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.86 E-value=2.5e+02 Score=27.50 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=39.0
Q ss_pred EEeCCceEEEeeeccCcCcHHH--------HHHHHCCCeEEEEcCCCCCCCCHHHH--HHHHHHHHHHhCCeeEee
Q 022660 225 VDTDVGRIGIGICYDIRFQELA--------MIYGARGAHLICYPGAFNMTTGPLHW--ELLQRARATDNQVLPHSP 290 (294)
Q Consensus 225 ~~~~~grigi~ICyD~~fpe~~--------r~la~~Gadlil~ps~~~~~~~~~~~--~~l~~~RAiEn~~~vv~a 290 (294)
+..+.--++.+||.|..|-|-. ..+.+.++|+++.--+|+.. .+-. -.++++-.-+.+++++.+
T Consensus 40 l~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNag--rYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 40 LEEDAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAG--RYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred hccCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCc--cHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3334557999999999996522 22346789999986666643 2222 223333333567777764
No 138
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.85 E-value=2.5e+02 Score=27.47 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCceEEEeeeccCcCcHHH--------HHHHHCCCeEEEEcCCCCCCCCHHHH--HHHHHHHHHHhCCeeEee
Q 022660 228 DVGRIGIGICYDIRFQELA--------MIYGARGAHLICYPGAFNMTTGPLHW--ELLQRARATDNQVLPHSP 290 (294)
Q Consensus 228 ~~grigi~ICyD~~fpe~~--------r~la~~Gadlil~ps~~~~~~~~~~~--~~l~~~RAiEn~~~vv~a 290 (294)
+.--++.+||.|..|-|-. ....+.++|+++.--+|+.. .+-. -.++++-.-+.+++++.+
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNag--rYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAG--RYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCc--cHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4557999999999996522 22346889999986666643 2222 223333333567777765
No 139
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=25.83 E-value=77 Score=28.08 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred ceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEc
Q 022660 82 KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILL 120 (294)
Q Consensus 82 ~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVf 120 (294)
.+||+++ .|.-.|..++++.++.+.+.++|+||.
T Consensus 4 ~~kIl~i-----SDiHgn~~~le~l~~~~~~~~~D~vv~ 37 (224)
T cd07388 4 VRYVLAT-----SNPKGDLEALEKLVGLAPETGADAIVL 37 (224)
T ss_pred eeEEEEE-----EecCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 3566665 566667888888888888889998774
No 140
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=25.43 E-value=1.4e+02 Score=28.27 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=36.5
Q ss_pred EEEccCCcEEEE----EeecccCCCCCCCccccccccCccCCCCCeEEEe-CCceEEEeeec
Q 022660 182 CVFGSDGKLIAK----HRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT-DVGRIGIGICY 238 (294)
Q Consensus 182 ~vi~~~G~il~~----y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~-~~grigi~ICy 238 (294)
..++|+|+.+.. -||+.++.++ -+.-...+...+.+|.++..+.+ +.+|++-+||.
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence 446677765543 5677776654 22223334455688988877766 78999999884
No 141
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=25.34 E-value=3.5e+02 Score=26.26 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCe
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~ 176 (294)
..-+++..++++-..+...++.|++|..+.-.. .++.. ... ....++..+....- ....+-..
T Consensus 105 ~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~-----~f~~~--------~~~---e~~~~~~~i~y~~~-e~~~d~~~ 167 (409)
T KOG2178|consen 105 ESVLEKFVELVEWLLQTFPNITVYVEDKVAKDK-----QFSAG--------NLD---ESFGVKERILYWTT-EGCDDLPN 167 (409)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEechhhhhhh-----hhccc--------chh---hcccchhceEeecc-cccccccc
Confidence 455777778888888888899999998643211 00000 001 12233333433321 22245578
Q ss_pred eEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccC-cCcHHHHHHHHCCCe
Q 022660 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI-RFQELAMIYGARGAH 255 (294)
Q Consensus 177 ~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~-~fpe~~r~la~~Gad 255 (294)
.|..++.++.||.++. ...-|.. .-++|+.+.-|++|++.=++. .|.+........++-
T Consensus 168 ~~D~iItLGGDGTvL~-------------------aS~LFq~-~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~~~~ 227 (409)
T KOG2178|consen 168 RFDLIITLGGDGTVLY-------------------ASSLFQR-SVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNGRAA 227 (409)
T ss_pred ceeEEEEecCCccEEE-------------------ehhhhcC-CCCCeEEeecCCccccccccHHHHHHHHHHHhcCcce
Confidence 8999999999998752 1122322 267888888889999988887 555555544444444
Q ss_pred EEE
Q 022660 256 LIC 258 (294)
Q Consensus 256 lil 258 (294)
+.+
T Consensus 228 v~l 230 (409)
T KOG2178|consen 228 VNL 230 (409)
T ss_pred Eee
Confidence 444
No 142
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=25.32 E-value=2.1e+02 Score=25.81 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCC--CCcHHHHHHHHHHHhcCcEEEEe
Q 022660 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGG--DASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 103 i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~--~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
+-..++.|...|++-|++|.-...+|......-..-.+.... .-......+.++.++.|.++++-
T Consensus 123 lGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t 189 (260)
T COG0566 123 LGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVAT 189 (260)
T ss_pred hhhHHhhHHHhCCCEEEECCCccCCccceeEEecCChheeceeEEEeccHHHHHHHHHHcCeEEEEE
Confidence 455677788889999999998887776543321111100000 00125667888889899999864
No 143
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=24.42 E-value=3.3e+02 Score=25.97 Aligned_cols=62 Identities=16% Similarity=-0.019 Sum_probs=46.0
Q ss_pred CceEEEeeeccCcCcHHHHH-HHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 229 VGRIGIGICYDIRFQELAMI-YGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 229 ~grigi~ICyD~~fpe~~r~-la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
..|+.++.+|-..-+++.+. +...|++=|++-+.-........+.. -.++.+.|++||.+.+
T Consensus 229 ~~~V~ii~~ypG~~~~~i~~a~~~~g~~GiVie~~G~G~~~~~~~~~--i~~~~~~gi~VV~sSr 291 (351)
T COG0252 229 EPKVVIIKYYPGLSSSLIDSALLSSGAKGLVLEGTGSGNVTPALIES--IERASKRGIPVVYSSR 291 (351)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEEECCCCCChHHHHH--HHHHHHCCCeEEEEec
Confidence 37999999999999988884 67899998887654222334444444 4567799999998764
No 144
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=24.31 E-value=2.8e+02 Score=21.72 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCcEEEcC
Q 022660 94 ADKERNIAHARRAIEEAAEKGAKLILLP 121 (294)
Q Consensus 94 ~d~~~n~~~i~~~i~~A~~~gadLVVfP 121 (294)
.-+...+..+.++.++..+.++++|...
T Consensus 42 ~~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 42 PVCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 4456677778888777777888887764
No 145
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.28 E-value=1.2e+02 Score=28.62 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=51.2
Q ss_pred HHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-CCeeEEEE
Q 022660 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-GDRLYNTC 181 (294)
Q Consensus 103 i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa 181 (294)
-+-.|.+|....+++++.=|.... ..+ . ....+++.|.++-++.+++|+.=+ .+-+ =.++.|.+
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSA-LDP----~---------TT~sIL~LL~~In~~lglTIvlIT-HEm~Vvk~ic~rV 212 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSA-LDP----E---------TTQSILELLKDINRELGLTIVLIT-HEMEVVKRICDRV 212 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCcccc-CCh----H---------HHHHHHHHHHHHHHHcCCEEEEEe-chHHHHHHHhhhh
Confidence 344566778888999998886421 110 0 112588899999999999998743 3322 35678888
Q ss_pred EEEccCCcEEEEE
Q 022660 182 CVFGSDGKLIAKH 194 (294)
Q Consensus 182 ~vi~~~G~il~~y 194 (294)
.+++ +|+++..-
T Consensus 213 avm~-~G~lvE~G 224 (339)
T COG1135 213 AVLD-QGRLVEEG 224 (339)
T ss_pred eEee-CCEEEEec
Confidence 8886 78887553
No 146
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.28 E-value=2.7e+02 Score=23.68 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEcc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (294)
+..|...+++++++=|-.. |... ... ..+.+.|.+++++.+.++++-++....-..+.+..++++
T Consensus 142 la~al~~~p~llllDEPt~-~LD~-------~~~------~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~- 206 (214)
T cd03297 142 LARALAAQPELLLLDEPFS-ALDR-------ALR------LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME- 206 (214)
T ss_pred HHHHHhcCCCEEEEcCCcc-cCCH-------HHH------HHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-
Confidence 3445566778888888532 2110 000 135667777877767666654433222234455566664
Q ss_pred CCcEE
Q 022660 187 DGKLI 191 (294)
Q Consensus 187 ~G~il 191 (294)
+|+++
T Consensus 207 ~G~i~ 211 (214)
T cd03297 207 DGRLQ 211 (214)
T ss_pred CCEEE
Confidence 67653
No 147
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=23.95 E-value=1.6e+02 Score=20.64 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEE
Q 022660 149 STAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191 (294)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il 191 (294)
..+.+.+|..+..+.++-| +- ...++.|++.++++.++++.
T Consensus 17 t~~~~~~Ll~~gkT~~ikG-F~-SK~Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 17 TDEEVKELLEKGKTGLIKG-FK-SKKGKPFDAYLVLDDDKKVK 57 (62)
T ss_pred CHHHHHHHHHcCCccCccC-cc-cCCCCEEeEEEEEcCCCeEE
Confidence 3456788888888888887 43 35788999999998777643
No 148
>PRK11096 ansB L-asparaginase II; Provisional
Probab=23.82 E-value=2.9e+02 Score=26.17 Aligned_cols=61 Identities=18% Similarity=-0.065 Sum_probs=44.2
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
-++.++-||=..-+++.+.+...|++=|+.-.. +...-+..|... -.+|.++|++||.+++
T Consensus 233 ~~V~il~~~pG~~~~~l~~~l~~~~~GiVl~g~-G~Gn~~~~~~~~-l~~a~~~GipVV~~Sq 293 (347)
T PRK11096 233 PKVGIVYNYANASDLPAKALVDAGYDGIVSAGV-GNGNLYKTVFDT-LATAAKNGVAVVRSSR 293 (347)
T ss_pred CeEEEEEeCCCCCHHHHHHHHhccCCEEEEEeE-CCCCCCHHHHHH-HHHHHHCCCEEEEeCC
Confidence 489999999888899999888888877775433 322223345444 4578899999999875
No 149
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.81 E-value=3.6e+02 Score=22.29 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEE
Q 022660 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (294)
Q Consensus 98 ~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv 165 (294)
.-.+.+..+++++.+.++++|+..- +...... ..+.+ ..+.+.++++|+++++.++
T Consensus 92 ~~~~~l~~lv~~~~~~~~~vili~~---pp~~~~~---~~~~~------~~~~~~~~~~a~~~~~~~i 147 (200)
T cd01829 92 EYRQRIDELLNVARAKGVPVIWVGL---PAMRSPK---LSADM------VYLNSLYREEVAKAGGEFV 147 (200)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEcC---CCCCChh---HhHHH------HHHHHHHHHHHHHcCCEEE
Confidence 3345666666666677899887632 2211111 11121 2466788899999887554
No 150
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.77 E-value=2.2e+02 Score=25.71 Aligned_cols=45 Identities=18% Similarity=-0.000 Sum_probs=28.0
Q ss_pred HHHHHHCCCeEEEEcCCCCCCCCH---------HHHHHHHHHHHHHhCCeeEee
Q 022660 246 AMIYGARGAHLICYPGAFNMTTGP---------LHWELLQRARATDNQVLPHSP 290 (294)
Q Consensus 246 ~r~la~~Gadlil~ps~~~~~~~~---------~~~~~l~~~RAiEn~~~vv~a 290 (294)
.+..+++|+|+|+.|-.+...... .......+..|.+++++++..
T Consensus 24 i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 24 AAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred HHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence 344566899999999765321110 123333467788999988754
No 151
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.55 E-value=5.5e+02 Score=24.38 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=49.1
Q ss_pred CceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCC----CCCCCCCCC-c--------cchhhhhccCCCCc
Q 022660 81 AKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEI----WNSPYSHDS-F--------PVYAEDIDAGGDAS 147 (294)
Q Consensus 81 ~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~----~l~gy~~~~-~--------~~~~~~~~~~~~~~ 147 (294)
+.+-||=+-.|-.+| +++..++|+.|++.|||.|=|.=. .++.-.... + ..+-+..+....+-
T Consensus 14 ~~~iIAEig~NHnG~----le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~ 89 (347)
T COG2089 14 KPFIIAEIGANHNGD----LERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPL 89 (347)
T ss_pred CcEEEeeecccccCc----HHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCH
Confidence 344454444444455 778889999999999999987652 122100000 0 01112223334556
Q ss_pred HHHHHHHHHHHhcCcEEEE
Q 022660 148 PSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 148 ~~~~~l~~lA~~~~i~Iv~ 166 (294)
++...|.+.|++.|+.++.
T Consensus 90 e~~~~Lke~a~~~Gi~~~S 108 (347)
T COG2089 90 EWHAQLKEYARKRGIIFFS 108 (347)
T ss_pred HHHHHHHHHHHHcCeEEEe
Confidence 7888999999999986654
No 152
>PRK09989 hypothetical protein; Provisional
Probab=22.80 E-value=2.6e+02 Score=24.69 Aligned_cols=62 Identities=10% Similarity=-0.028 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEE-cCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEE
Q 022660 96 KERNIAHARRAIEEAAEKGAKLIL-LPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (294)
Q Consensus 96 ~~~n~~~i~~~i~~A~~~gadLVV-fPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~ 166 (294)
.+...+.+.+.++.|.+-|++.|+ +|-....+. +.....+.. -..++.+.+.|+++++.+.+
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~---~~~~~~~~~------~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMAGVVPAGE---DAERYRAVF------IDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECccCCCCCC---CHHHHHHHH------HHHHHHHHHHHHhcCCEEEE
Confidence 344567788888889999998764 443211111 101111111 13567778888899998764
No 153
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.73 E-value=1.9e+02 Score=26.31 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=24.5
Q ss_pred EeeeccCcCcHHHHHHHHCCCeEEEEcCCC
Q 022660 234 IGICYDIRFQELAMIYGARGAHLICYPGAF 263 (294)
Q Consensus 234 i~ICyD~~fpe~~r~la~~Gadlil~ps~~ 263 (294)
+++.+-+..+|..+.+...|||-+++-|++
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 334566678999999999999999998874
No 154
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=22.52 E-value=1.5e+02 Score=24.75 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeeeCCe---eEEEEEEEccCCcEEEEEe
Q 022660 149 STAMLSEVARLLKITIVGGSIPERSGDR---LYNTCCVFGSDGKLIAKHR 195 (294)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~---~yNsa~vi~~~G~il~~y~ 195 (294)
..+.+.++++.+++...-.......++. .-+..++++|+|+++..|.
T Consensus 123 ~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 123 SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 3456788888888765432111111222 2246789999999987763
No 155
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=22.38 E-value=7.4e+02 Score=24.22 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred EEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCc--eEEEeeeccCcCcHHHHHHHHCCCeE
Q 022660 179 NTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVG--RIGIGICYDIRFQELAMIYGARGAHL 256 (294)
Q Consensus 179 Nsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~g--rigi~ICyD~~fpe~~r~la~~Gadl 256 (294)
....+++.+|++++.-.+.-+.. ...+ +.......+ ++|-.|.-.-...+-...+.+.|+|+
T Consensus 176 ~~lpVVDe~G~lvGiVT~~DIl~-----------~~~~-----~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~ 239 (450)
T TIGR01302 176 EKLPVVDKNGELVGLITMKDIVK-----------RRKF-----PHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDV 239 (450)
T ss_pred CeEEEEcCCCcEEEEEEhHHhhh-----------cccC-----CcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCE
Confidence 34677787888877766655422 1111 122222333 56666655444556677888999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 257 ICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 257 il~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
|.+-+.-++ +...+..+...|..--.+.|+..|+
T Consensus 240 I~vd~a~g~--~~~~~~~i~~i~~~~~~~~vi~G~v 273 (450)
T TIGR01302 240 IVIDSSHGH--SIYVIDSIKEIKKTYPDLDIIAGNV 273 (450)
T ss_pred EEEECCCCc--HhHHHHHHHHHHHhCCCCCEEEEeC
Confidence 998776432 2344455555554323677777664
No 156
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=22.24 E-value=3.7e+02 Score=25.48 Aligned_cols=61 Identities=13% Similarity=-0.058 Sum_probs=44.8
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
-|+.++-+|=..-+++.+.+...|++=|++-+. +...-+..|... -.++.+.|+.||.+.+
T Consensus 239 p~V~il~~~pG~~~~ll~~~~~~g~~GlVl~g~-G~Gn~p~~~~~a-l~~a~~~GipVV~~Sr 299 (349)
T TIGR00520 239 PKVDIIYAYQNAPPLIVNAVLDAGAKGIVLAGV-GNGSLSAAGLKV-NETAAKLGVPIVRSSR 299 (349)
T ss_pred CcEEEEEECCCCCHHHHHHHHhCCCCEEEEEeE-CCCCCCHHHHHH-HHHHHHCCCEEEEEcc
Confidence 478999899888899999988889888887554 222223345544 4578899999998864
No 157
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.10 E-value=3.2e+02 Score=25.50 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=45.8
Q ss_pred HHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCc
Q 022660 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189 (294)
Q Consensus 110 A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~ 189 (294)
+.-+..+++.+=|-.+.- + -.+. ....+-+++..++++++|+..++...+=..+-+..++++ .|+
T Consensus 170 aLLh~p~VLfLDEpTvgL---D---V~aq--------~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~-~Gq 234 (325)
T COG4586 170 ALLHPPKVLFLDEPTVGL---D---VNAQ--------ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID-QGQ 234 (325)
T ss_pred HhcCCCcEEEecCCccCc---c---hhHH--------HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-CCc
Confidence 344577888888865321 0 0111 146677888888899999988766555567888889997 788
Q ss_pred EEE
Q 022660 190 LIA 192 (294)
Q Consensus 190 il~ 192 (294)
++.
T Consensus 235 lv~ 237 (325)
T COG4586 235 LVF 237 (325)
T ss_pred Eee
Confidence 764
No 158
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.93 E-value=2.6e+02 Score=25.36 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEE
Q 022660 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCC 182 (294)
Q Consensus 103 i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~ 182 (294)
-+-++.+|....+||++|=|-+.. -|.. . ...+.+.|.++.++ |++|+.=+.....-..+++..+
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~g----vD~~--~--------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTG----VDVA--G--------QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCccc----CCHH--H--------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEE
Confidence 344677788899999999996532 1110 0 12477888889888 8887764333222245666666
Q ss_pred EEc
Q 022660 183 VFG 185 (294)
Q Consensus 183 vi~ 185 (294)
+++
T Consensus 211 ~Ln 213 (254)
T COG1121 211 CLN 213 (254)
T ss_pred EEc
Confidence 664
No 159
>PRK09875 putative hydrolase; Provisional
Probab=21.90 E-value=2.1e+02 Score=26.45 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEee
Q 022660 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (294)
Q Consensus 100 ~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (294)
.+.+.+.++..++.|.+-|| |....|+.. -.+.+++++++.++.||.++
T Consensus 33 ~~~~~~el~~~~~~Gg~tiV--d~T~~g~GR------------------d~~~l~~is~~tgv~Iv~~T 81 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVI--EMTNRYMGR------------------NAQFMLDVMRETGINVVACT 81 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEE--ecCCCccCc------------------CHHHHHHHHHHhCCcEEEcC
Confidence 45555556666778999999 877666532 34568889999999998774
No 160
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.74 E-value=3.3e+02 Score=20.10 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEE
Q 022660 149 STAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192 (294)
Q Consensus 149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~ 192 (294)
.++.+.+..++.++.+..+ +...+...|. +++.||+|..+.
T Consensus 83 ~v~~~~~~l~~~g~~~~~~--~~~~~~g~~~-~~~~DPdG~~iE 123 (125)
T cd07241 83 AVDELTERLRADGYLIIGE--PRTTGDGYYE-SVILDPEGNRIE 123 (125)
T ss_pred HHHHHHHHHHHCCCEEEeC--ceecCCCeEE-EEEECCCCCEEE
Confidence 4555666666778877653 3223344554 457899998763
No 161
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=21.53 E-value=1.3e+02 Score=25.68 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCcEEEcCCCCCC
Q 022660 101 AHARRAIEEAAEKGAKLILLPEIWNS 126 (294)
Q Consensus 101 ~~i~~~i~~A~~~gadLVVfPE~~l~ 126 (294)
....+.+.++.++|-.++||||...+
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 33445555667889999999999754
No 162
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.27 E-value=2.8e+02 Score=26.98 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=38.4
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
.++|..++-.-...+....+++.|+|+|++-+.-++ +......+...|..--++.++..|+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~--~~~~~~~v~~ik~~~p~~~vi~g~V 202 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGH--STRIIELVKKIKTKYPNLDLIAGNI 202 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCC--ChhHHHHHHHHHhhCCCCcEEEEec
Confidence 366777765333457788899999999998766433 3344455555555333566666554
No 163
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.08 E-value=4.3e+02 Score=23.05 Aligned_cols=65 Identities=28% Similarity=0.278 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchh-hhhccCCCCcHHHHHHHHHHHhcCcEEEEe
Q 022660 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYA-EDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (294)
Q Consensus 97 ~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~-~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~G 167 (294)
+++++.+++.++.|.+.|++.||.......+......+... +.. -..+..+.++|+++++.+...
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~~i~l~~e 145 (274)
T COG1082 80 EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERW------AEALEELAEIAEELGIGLALE 145 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHH------HHHHHHHHHHHHHhCCceEEe
Confidence 56788888888889999999888777655443221101111 111 247788889988887776554
No 164
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.72 E-value=2.1e+02 Score=21.36 Aligned_cols=45 Identities=9% Similarity=-0.206 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEE
Q 022660 148 PSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194 (294)
Q Consensus 148 ~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y 194 (294)
.-++.+.+.+++.|+.+.-+ +.........+.++.||+|..+..+
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWV--EAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred HHHHHHHHHHHHcCCCcccc--cCCcCCCCccEEEEECCCCCEEEEE
Confidence 35566666666778776543 2222222224688999999877543
No 165
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.61 E-value=3.5e+02 Score=23.31 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=39.3
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEcc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (294)
+..|...+++++++=|-... . |. ... ....+.|.+++++.+..+++-+.....-..+.+..+++.
T Consensus 155 la~al~~~p~llllDEPt~~-L---D~-~~~---------~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~- 219 (241)
T cd03256 155 IARALMQQPKLILADEPVAS-L---DP-ASS---------RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK- 219 (241)
T ss_pred HHHHHhcCCCEEEEeCcccc-C---CH-HHH---------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 44455668888888885422 1 10 000 136677788877667666654443222234556677775
Q ss_pred CCcEE
Q 022660 187 DGKLI 191 (294)
Q Consensus 187 ~G~il 191 (294)
+|+++
T Consensus 220 ~G~i~ 224 (241)
T cd03256 220 DGRIV 224 (241)
T ss_pred CCEEE
Confidence 78764
No 166
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.48 E-value=3.8e+02 Score=22.63 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEcc
Q 022660 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (294)
Q Consensus 107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~ 186 (294)
+..|...+++++++=|-... ... . . .....+.|.+++++.+..+++-++....-..+.+..+++.
T Consensus 139 ia~al~~~p~llllDEP~~~-LD~-----~--~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~- 203 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAA-LDP-----A--L------RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD- 203 (211)
T ss_pred HHHHHhcCCCEEEEcCCccc-CCH-----H--H------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-
Confidence 33345567788888775422 110 0 0 0136667777777667776664443222234455666664
Q ss_pred CCcEE
Q 022660 187 DGKLI 191 (294)
Q Consensus 187 ~G~il 191 (294)
+|+++
T Consensus 204 ~G~i~ 208 (211)
T cd03298 204 NGRIA 208 (211)
T ss_pred CCEEe
Confidence 67653
No 167
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=20.45 E-value=3.4e+02 Score=23.51 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEc
Q 022660 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFG 185 (294)
Q Consensus 106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~ 185 (294)
.+..|...+++++++=|-. .|... ... ....+.|.+++++.+..+++-+.....-..+.+..+++.
T Consensus 124 ~la~al~~~p~lllLDEPt-~gLD~-----~~~--------~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 189 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPF-GALDA-----LTR--------GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLT 189 (230)
T ss_pred HHHHHHHcCCCEEEEcCCC-cCCCH-----HHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 3444567788999998853 22110 000 136667778877767766654443222234556666674
Q ss_pred cCCcEE
Q 022660 186 SDGKLI 191 (294)
Q Consensus 186 ~~G~il 191 (294)
+|+++
T Consensus 190 -~G~i~ 194 (230)
T TIGR01184 190 -NGPAA 194 (230)
T ss_pred -CCcEe
Confidence 78765
No 168
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.35 E-value=3.1e+02 Score=23.70 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=34.8
Q ss_pred HHHHHHHHHHH-HHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEee
Q 022660 100 IAHARRAIEEA-AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (294)
Q Consensus 100 ~~~i~~~i~~A-~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs 168 (294)
++.+...++.+ .+.++++||+==+..--... ......+.+ ..+...|.++|+++++.+++-+
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~~------~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQEV------AEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHHH------HHHHHHHHHHHHHhCCeEEEec
Confidence 34444444444 34589999986443211110 001111111 2477889999999999988754
No 169
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=20.34 E-value=4.3e+02 Score=25.66 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=45.2
Q ss_pred ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
-++.++-||=...+++.+.+...|++=|+.-+. +...-+..|... -.+|.+.|+.||.+.+
T Consensus 276 ~~V~ll~~~pG~d~~~l~~~~~~g~~GiVleg~-G~G~vp~~~~~~-l~~a~~~GipVV~tSq 336 (404)
T TIGR02153 276 EKVALVKFYPGISPEIIEFLVDKGYKGIVIEGT-GLGHVSEDWIPS-IKRATDDGVPVVMTSQ 336 (404)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeE-CCCCCCHHHHHH-HHHHHHCCCEEEEeCC
Confidence 489999999999999999988889887776543 222223445544 4578899999999875
No 170
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.26 E-value=2.3e+02 Score=28.23 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=42.8
Q ss_pred eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660 231 RIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV 292 (294)
Q Consensus 231 rigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~ 292 (294)
+++-++..--..++..+.+...|+|+|++-+...+ +...++.+...|..-..+.+++-|+
T Consensus 217 ~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~--~~~~~~~i~~ik~~~p~~~v~agnv 276 (479)
T PRK07807 217 RVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH--QEKMLEALRAVRALDPGVPIVAGNV 276 (479)
T ss_pred chHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc--cHHHHHHHHHHHHHCCCCeEEeecc
Confidence 45556655445678999999999999998776443 5566777777777555677777664
No 171
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=20.19 E-value=2.9e+02 Score=20.44 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEE
Q 022660 148 PSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193 (294)
Q Consensus 148 ~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~ 193 (294)
..++.+.+.+++.|+.++.+ ........-...+.+.||+|..+..
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~~DP~G~~iel 114 (120)
T cd08362 70 ADVDALARQVAARGGTVLSE-PGATDDPGGGYGFRFFDPDGRLIEF 114 (120)
T ss_pred HHHHHHHHHHHHcCCceecC-CcccCCCCCceEEEEECCCCCEEEE
Confidence 35566777777788887654 1112111123367889999987654
No 172
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.12 E-value=2.1e+02 Score=26.94 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCC----C------CCCC-CCc--cchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWN----S------PYSH-DSF--PVYAEDIDAGGDASPSTAMLSEVARLLK 161 (294)
Q Consensus 95 d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l----~------gy~~-~~~--~~~~~~~~~~~~~~~~~~~l~~lA~~~~ 161 (294)
+-..+++...++|+.|++.|||-|=|.=+.. . .|.. ..+ ..+.+.......+.+..+.|.+.|+++|
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 3344588899999999999999886653211 0 0100 001 0111222223345578899999999999
Q ss_pred cEEEEe
Q 022660 162 ITIVGG 167 (294)
Q Consensus 162 i~Iv~G 167 (294)
+.++.-
T Consensus 90 i~~~st 95 (329)
T TIGR03569 90 IEFLST 95 (329)
T ss_pred CcEEEE
Confidence 988764
Done!