Query 022661
Match_columns 294
No_of_seqs 191 out of 412
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 2.5E-50 8.5E-55 343.0 4.9 129 141-270 2-130 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 7.1E-42 2.4E-46 287.4 6.9 124 138-269 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 3E-29 1E-33 208.0 6.8 102 138-253 9-111 (119)
4 3k6t_A Female germline-specifi 99.1 1.4E-10 4.8E-15 85.7 5.0 38 33-70 7-44 (60)
5 4dnn_A Protein quaking, MQKI, 99.0 6.6E-11 2.3E-15 86.0 2.8 38 33-70 4-44 (56)
6 2xa6_A KH domain-containing\,R 99.0 7.1E-10 2.4E-14 75.9 5.2 36 31-69 5-40 (41)
7 2opv_A KHSRP protein; KH domai 98.8 6.6E-09 2.3E-13 79.8 5.7 71 141-240 14-84 (85)
8 1dtj_A RNA-binding neurooncolo 98.7 1.8E-08 6.1E-13 75.3 5.2 73 140-240 2-74 (76)
9 1x4m_A FAR upstream element bi 98.6 4.1E-08 1.4E-12 76.9 5.5 73 140-241 14-86 (94)
10 1x4n_A FAR upstream element bi 98.5 9.7E-08 3.3E-12 74.5 4.8 70 140-240 14-83 (92)
11 2hh2_A KH-type splicing regula 98.5 1E-07 3.5E-12 76.5 5.0 72 142-241 8-79 (107)
12 1ec6_A RNA-binding protein NOV 98.4 5.1E-08 1.8E-12 75.0 2.1 73 140-240 2-74 (87)
13 1we8_A Tudor and KH domain con 98.4 2.3E-07 8E-12 73.8 5.8 73 139-240 13-85 (104)
14 1zzk_A Heterogeneous nuclear r 98.4 1.8E-07 6.3E-12 71.3 4.8 69 141-240 7-75 (82)
15 2p2r_A Poly(RC)-binding protei 98.4 1.2E-07 4.2E-12 71.1 3.2 70 140-240 4-73 (76)
16 1wvn_A Poly(RC)-binding protei 98.4 2E-07 6.7E-12 71.0 4.0 69 141-240 6-74 (82)
17 2dgr_A Ring finger and KH doma 98.4 3E-07 1E-11 71.1 4.8 65 141-239 10-74 (83)
18 1vig_A Vigilin; RNA-binding pr 98.4 5.1E-07 1.7E-11 67.3 5.4 65 143-240 7-71 (71)
19 2hh3_A KH-type splicing regula 98.4 1.9E-07 6.5E-12 75.2 3.3 68 142-240 12-79 (106)
20 2cte_A Vigilin; K homology typ 98.3 3E-07 1E-11 72.1 4.0 67 141-240 17-83 (94)
21 1j5k_A Heterogeneous nuclear r 98.3 2.5E-07 8.7E-12 71.6 3.5 70 140-240 13-82 (89)
22 2ctk_A Vigilin; K homology typ 98.3 2.7E-07 9.4E-12 73.9 3.5 69 139-240 15-83 (104)
23 2axy_A Poly(RC)-binding protei 98.3 2.8E-07 9.7E-12 69.0 2.8 68 140-240 4-71 (73)
24 3krm_A Insulin-like growth fac 98.2 5.5E-07 1.9E-11 75.4 2.3 72 140-240 84-155 (163)
25 2ctm_A Vigilin; K homology typ 98.1 1.5E-06 5.2E-11 68.5 4.0 67 142-240 18-84 (95)
26 2ctl_A Vigilin; K homology typ 98.1 2.8E-06 9.5E-11 67.1 5.1 69 142-240 18-86 (97)
27 2jvz_A KH type-splicing, FAR u 98.0 1.1E-05 3.8E-10 67.1 6.1 71 142-241 3-73 (164)
28 1j4w_A FUSE binding protein; s 97.9 5.8E-06 2E-10 70.1 4.3 70 142-239 105-174 (174)
29 2jvz_A KH type-splicing, FAR u 97.8 1E-05 3.5E-10 67.3 3.0 60 157-240 100-159 (164)
30 2jzx_A Poly(RC)-binding protei 97.7 1E-05 3.4E-10 67.5 2.2 70 141-240 89-158 (160)
31 2jzx_A Poly(RC)-binding protei 97.7 1.6E-05 5.6E-10 66.2 3.3 68 139-239 3-70 (160)
32 1j4w_A FUSE binding protein; s 97.7 1.6E-05 5.5E-10 67.4 3.2 68 142-240 4-71 (174)
33 2ctj_A Vigilin; K homology typ 97.6 2.1E-05 7.3E-10 62.1 2.2 65 143-240 19-84 (95)
34 1tua_A Hypothetical protein AP 97.6 4.3E-05 1.5E-09 67.6 4.3 54 157-241 107-160 (191)
35 2anr_A Neuro-oncological ventr 97.6 2.9E-05 9.9E-10 65.9 3.0 73 141-241 6-78 (178)
36 2anr_A Neuro-oncological ventr 97.6 2.9E-05 1E-09 65.8 2.6 71 141-240 104-174 (178)
37 3krm_A Insulin-like growth fac 97.4 8E-05 2.7E-09 62.2 3.8 38 142-186 4-41 (163)
38 2e3u_A PH-DIM2P, hypothetical 97.4 8.4E-05 2.9E-09 66.8 3.2 53 158-241 139-191 (219)
39 2cpq_A FragIle X mental retard 97.3 0.00011 3.9E-09 58.0 2.7 64 142-240 16-80 (91)
40 3u1k_A Polyribonucleotide nucl 97.1 0.00033 1.1E-08 71.7 4.3 67 138-240 564-630 (630)
41 2e3u_A PH-DIM2P, hypothetical 95.7 0.0053 1.8E-07 55.1 3.2 68 142-240 35-102 (219)
42 2qnd_A FMR1 protein; KH domain 95.7 0.0056 1.9E-07 51.1 3.0 71 143-240 69-141 (144)
43 4aid_A Polyribonucleotide nucl 95.2 0.0054 1.9E-07 63.7 1.5 56 157-241 579-634 (726)
44 3n89_A Defective in GERM LINE 94.7 0.041 1.4E-06 53.2 6.1 74 139-238 28-103 (376)
45 2ctf_A Vigilin; K homology typ 93.6 0.095 3.3E-06 41.4 5.2 64 141-240 27-91 (102)
46 2qnd_A FMR1 protein; KH domain 90.8 0.049 1.7E-06 45.3 0.2 30 142-178 5-34 (144)
47 3v69_A Protein filia; RNA-bind 88.5 0.085 2.9E-06 44.7 0.0 29 156-184 64-92 (140)
48 3cdi_A Polynucleotide phosphor 88.2 0.093 3.2E-06 54.5 0.0 35 157-191 569-603 (723)
49 1tua_A Hypothetical protein AP 85.9 0.15 5.3E-06 44.8 0.1 38 141-185 4-41 (191)
50 3n89_A Defective in GERM LINE 80.8 0.93 3.2E-05 43.8 3.2 62 158-239 196-259 (376)
51 1e3p_A Guanosine pentaphosphat 69.7 0.63 2.2E-05 48.6 -1.3 32 157-188 607-638 (757)
52 2z0s_A Probable exosome comple 65.1 14 0.00047 32.8 6.7 68 157-251 157-224 (235)
53 2cxc_A NUSA; transcription ter 55.6 2.3 7.9E-05 35.8 -0.2 29 157-185 45-73 (144)
54 2ba0_A Archeal exosome RNA bin 33.8 52 0.0018 29.0 5.1 74 157-259 145-218 (229)
55 1k0r_A NUSA; two component arr 30.2 11 0.00036 36.4 -0.0 33 152-185 245-278 (366)
56 3k5i_A Phosphoribosyl-aminoimi 29.1 1.2E+02 0.004 28.2 6.9 62 160-237 334-400 (403)
57 1wjw_A Phosphoacetylglucosamin 28.0 1.7E+02 0.0057 22.8 6.7 52 168-239 45-97 (112)
58 2asb_A Transcription elongatio 27.8 12 0.00041 34.3 -0.2 33 152-185 122-155 (251)
59 3isp_A HTH-type transcriptiona 25.7 28 0.00096 29.5 1.8 20 169-188 40-59 (303)
60 2pt7_G HP1451, hypothetical pr 21.6 12 0.00042 31.6 -1.2 57 159-239 44-101 (152)
61 3u42_A 50S ribosomal protein L 20.9 55 0.0019 29.2 2.8 67 152-239 121-201 (229)
62 1xao_A YDJ1, mitochondrial pro 20.8 1E+02 0.0035 24.3 4.2 49 176-240 47-97 (121)
63 1hh2_P NUSA, N utilization sub 20.0 30 0.001 32.9 0.9 33 152-185 241-274 (344)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=2.5e-50 Score=343.04 Aligned_cols=129 Identities=48% Similarity=0.785 Sum_probs=126.2
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
+++|||||+++||+ |||||+||||||+|+|+||++|||||.||||||+||.++|+.++|+|+|+|++|||||+|+++++
T Consensus 2 ~~~Ki~IP~~~~P~-~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 2 LQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA 80 (140)
T ss_dssp EEEEEECCTTTCSS-SCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred ceeEEEcCcccCCC-CCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc
Confidence 57899999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHcCccCCCCCC
Q 022661 221 EDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREESPS 270 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~p~~e~~delK~~QL~ELA~lNGt~r~~~~~ 270 (294)
+++|+++|++|+++|++||.|++|++|++|++||+|||+||||||+++++
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~ 130 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred hhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCccc
Confidence 99999999999999999999999999999999999999999999999877
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=7.1e-42 Score=287.42 Aligned_cols=124 Identities=43% Similarity=0.681 Sum_probs=108.5
Q ss_pred ceeEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEe
Q 022661 138 VVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEA 217 (294)
Q Consensus 138 ~vk~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a 217 (294)
..|+++|||||+++||+ |||||+||||+|+|+|+||++|||||.|||+||+++.+++. .+...|+|++|||||+|+|
T Consensus 4 ~~k~~~kv~IP~~~~P~-~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~--~~~~~~~~~~e~lhV~I~a 80 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPE-INFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTA 80 (131)
T ss_dssp -CCEEEEEECCTTTCCS-HHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSS--CCCCCSCCSSCCEEEEEEE
T ss_pred CceEEEEEEECCccccC-cceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccc--cccccccccCCCeEEEEEE
Confidence 36889999999999999 99999999999999999999999999999999999976541 1224578999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHhccCC---CCcchhHHHHHHHHHHHHHcCccCCCCC
Q 022661 218 EFPEDIINSRLDHAVAILENLLKP---VDESLDHYKKQQLRELAMLNGTLREESP 269 (294)
Q Consensus 218 ~~~~~~~~~rl~~A~e~Ie~LL~p---~~e~~delK~~QL~ELA~lNGt~r~~~~ 269 (294)
++++ +|++|+++|++||.+ +++++|++|++||+|||+||||||+++.
T Consensus 81 ~~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 81 NTME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SSHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CCHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 8854 789999999999975 7899999999999999999999999864
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=3e-29 Score=208.04 Aligned_cols=102 Identities=26% Similarity=0.366 Sum_probs=90.3
Q ss_pred ceeEEEEEecCCC-CCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEE
Q 022661 138 VVKRVIRLDVPVD-KYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVE 216 (294)
Q Consensus 138 ~vk~~~KI~IPv~-~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~ 216 (294)
...+++|||||++ .||+ |||||+||||+|+|+|+||++|||||.||||||++... .. -++++|||||+|+
T Consensus 9 ~~~~~~ki~ip~~~~~p~-fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~-------~~-~~e~~e~l~V~I~ 79 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPT-FNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEP-------AS-GREAFEPMYIYIS 79 (119)
T ss_dssp CSCEEEEEECCCTTSCTT-TCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCT-------TT-SSCCSSBCEEEEE
T ss_pred eeEEEEEEEcCCccCCCC-CCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccc-------cc-ccccCCCcEEEEE
Confidence 3568899999999 6999 99999999999999999999999999999999997432 12 2368999999999
Q ss_pred ecCchhHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Q 022661 217 AEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQ 253 (294)
Q Consensus 217 a~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~delK~~Q 253 (294)
+.+++ .+++|+++|++||.++.+..+++|++|
T Consensus 80 a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 80 HPKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp ESSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 99865 689999999999999998888888776
No 4
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=99.06 E-value=1.4e-10 Score=85.65 Aligned_cols=38 Identities=34% Similarity=0.529 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHhC
Q 022661 33 ERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGY 70 (294)
Q Consensus 33 ~~YL~ELl~E~~~L~~~~~~f~h~~rLL~~EI~RV~~~ 70 (294)
.+||++||+||.+|..|+++|.|+.|||++||.||+..
T Consensus 7 ~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~ 44 (60)
T 3k6t_A 7 VEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVA 44 (60)
T ss_dssp HHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999986
No 5
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=99.04 E-value=6.6e-11 Score=85.96 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhcCCccc---chhHHHHHHHHHHHHHHhC
Q 022661 33 ERYLAELLAERQKLGPFVQ---VLPLCSRLLSQEIRRITGY 70 (294)
Q Consensus 33 ~~YL~ELl~E~~~L~~~~~---~f~h~~rLL~~EI~RV~~~ 70 (294)
.+||++||+||++|+.|++ +|.|++|||++||.||+..
T Consensus 4 ~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~ 44 (56)
T 4dnn_A 4 PDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKD 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988 9999999999999999986
No 6
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=98.96 E-value=7.1e-10 Score=75.86 Aligned_cols=36 Identities=36% Similarity=0.648 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHh
Q 022661 31 DRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITG 69 (294)
Q Consensus 31 ~~~~YL~ELl~E~~~L~~~~~~f~h~~rLL~~EI~RV~~ 69 (294)
..++||.||++||.+|+| .|.||.|||++||.|+.+
T Consensus 5 ~~~kyLpeL~aEk~sLdP---sf~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 5 PENKYLPELMAEKDSLDP---SFTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp CHHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCc---hHHHHHHHHHHHHHHHHc
Confidence 358999999999999999 469999999999999986
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.79 E-value=6.6e-09 Score=79.83 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=56.2
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|...|+.. .+.+-+|.|++ ++
T Consensus 14 ~~~~i~Ip~-------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~ 69 (85)
T 2opv_A 14 TVQEIMIPA-------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DP 69 (85)
T ss_dssp EEEEEEECT-------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CH
T ss_pred EEEEEEeCh-------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CH
Confidence 346788883 6899999999999999999999999998755411 12455799998 65
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
+ .+++|+++|+.++.
T Consensus 70 ~-----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 70 Y-----KVQQACEMVMDILR 84 (85)
T ss_dssp H-----HHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHhc
Confidence 4 67889999998874
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.69 E-value=1.8e-08 Score=75.29 Aligned_cols=73 Identities=27% Similarity=0.496 Sum_probs=55.9
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
|.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...+... ++ ..+-.|.|++.
T Consensus 2 ~~~~~i~Ip-------~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-----------~~----~~~~~v~I~G~- 58 (76)
T 1dtj_A 2 KELVEMAVP-------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS- 58 (76)
T ss_dssp CEEEEEEEE-------TTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-----------TT----CCEEEEEEEES-
T ss_pred ceEEEEEEC-------hHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-----------CC----CceeEEEEEeC-
Confidence 456778888 37899999999999999999999999998643211 11 23457888875
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .+++|+++|+.++.
T Consensus 59 ~~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 59 PA-----ATQAAQYLISQRVT 74 (76)
T ss_dssp HH-----HHHHHHHHHHHHCC
T ss_pred HH-----HHHHHHHHHHHHHh
Confidence 33 57899999999875
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.61 E-value=4.1e-08 Score=76.89 Aligned_cols=73 Identities=14% Similarity=0.312 Sum_probs=57.3
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
..+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..|... ...+-.|.|++ +
T Consensus 14 ~~~~~i~Ip-------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~ 69 (94)
T 1x4m_A 14 NAVQEIMIP-------ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-D 69 (94)
T ss_dssp CEEEEEEEC-------HHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-C
T ss_pred cEEEEEEEC-------hhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-C
Confidence 345678888 37899999999999999999999999997543311 12345789998 5
Q ss_pred chhHHHHHHHHHHHHHHhccCC
Q 022661 220 PEDIINSRLDHAVAILENLLKP 241 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~p 241 (294)
++ .+++|+++|+++|..
T Consensus 70 ~~-----~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 70 PY-----KVQQAKEMVLELIRD 86 (94)
T ss_dssp TT-----THHHHHHHHHHHHCC
T ss_pred HH-----HHHHHHHHHHHHHhc
Confidence 44 568899999999874
No 10
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.50 E-value=9.7e-08 Score=74.49 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=54.2
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
..+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|..... -..+-.|.|++.
T Consensus 14 ~~~~~i~Ip-------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~------------------g~~~r~v~I~G~- 67 (92)
T 1x4n_A 14 VMTEEYKVP-------DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG------------------GLPERSCMLTGT- 67 (92)
T ss_dssp CEEEEEEEE-------HHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT------------------TCSEEEEEEEEC-
T ss_pred CEEEEEEEC-------hHHcceeECCCchHHHHHHHHhCCEEEEcCCCC------------------CCCccEEEEEeC-
Confidence 345678888 479999999999999999999999999975321 012347888885
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .+++|+++|++++.
T Consensus 68 ~e-----~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 68 PE-----SVQSAKRLLDQIVE 83 (92)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 43 56789999988875
No 11
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.49 E-value=1e-07 Score=76.50 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=54.1
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+.+|.|| -++||+|||++|.|+|+|+++|||+|.|..... +. . ...+=.|.|++ +++
T Consensus 8 ~~~i~IP-------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-------------~~-~-~~~~r~V~I~G-~~e 64 (107)
T 2hh2_A 8 EMTFSIP-------THKCGLVIGRGGENVKAINQQTGAFVEISRQLP-------------PN-G-DPNFKLFIIRG-SPQ 64 (107)
T ss_dssp CEEEEEE-------GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-------------TT-C-CTTEEEEEEES-CHH
T ss_pred eEEEEEC-------HHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-------------CC-C-CCCceEEEEEC-CHH
Confidence 3567887 378999999999999999999999999975321 00 0 11234688887 443
Q ss_pred hHHHHHHHHHHHHHHhccCC
Q 022661 222 DIINSRLDHAVAILENLLKP 241 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~p 241 (294)
.+++|+++|++++.-
T Consensus 65 -----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 65 -----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp -----HHHHHHHHHHHHSCS
T ss_pred -----HHHHHHHHHHHHHhc
Confidence 578999999999873
No 12
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=5.1e-08 Score=75.02 Aligned_cols=73 Identities=27% Similarity=0.496 Sum_probs=55.0
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
|.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..+... ++ ..+=.|.|++.
T Consensus 2 k~t~~i~IP-------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----------~g----~~~r~v~I~G~- 58 (87)
T 1ec6_A 2 KELVEIAVP-------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS- 58 (87)
T ss_dssp CSEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-----------TT----SCEEEEEEESS-
T ss_pred ceEEEEEEC-------hHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-----------CC----CCceEEEEEcC-
Confidence 445678887 37899999999999999999999999997542211 11 12346888774
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .++.|.++|+.++.
T Consensus 59 ~~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 59 PA-----ATQAAQYLISQRVT 74 (87)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHh
Confidence 33 57889999999886
No 13
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.44 E-value=2.3e-07 Score=73.82 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=56.6
Q ss_pred eeEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEec
Q 022661 139 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAE 218 (294)
Q Consensus 139 vk~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~ 218 (294)
..++.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-...... ..++=.|.|++.
T Consensus 13 ap~~~~i~Ip-------~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~~~V~I~G~ 69 (104)
T 1we8_A 13 TPVFEQLSVP-------QRSVGRIIGRGGETIRSICKASGAKITCDKESEGT----------------LLLSRLIKISGT 69 (104)
T ss_dssp CEEEEEEEEE-------TTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS----------------SSSEEEEEEEEE
T ss_pred CCEEEEEEEC-------hhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC----------------CCCcceEEEEcC
Confidence 4466788898 37899999999999999999999999997532110 123457889885
Q ss_pred CchhHHHHHHHHHHHHHHhccC
Q 022661 219 FPEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 219 ~~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
.. .+++|+++|+.++.
T Consensus 70 ~~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 70 QK------EVAAAKHLILEKVS 85 (104)
T ss_dssp HH------HHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHh
Confidence 42 47899999999886
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.43 E-value=1.8e-07 Score=71.26 Aligned_cols=69 Identities=19% Similarity=0.394 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|... .++ ..+=.|.|++. +
T Consensus 7 ~~~~i~Vp~-------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------------~~~----~~~~~v~I~G~-~ 60 (82)
T 1zzk_A 7 ITTQVTIPK-------DLAGSIIGKGGQRIKQIRHESGASIKIDEP--------------LEG----SEDRIITITGT-Q 60 (82)
T ss_dssp EEEEEEEET-------TTGGGGTCGGGHHHHHHHHHHCCEEEECCT--------------TSC----SSEEEEEEEEC-H
T ss_pred EEEEEEECh-------HhcCeeECCCchHHHHHHHHHCCEEEEcCC--------------CCC----CCceEEEEEeC-H
Confidence 456788883 689999999999999999999999999631 011 12347888883 4
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
+ .+++|+++|++++.
T Consensus 61 ~-----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 61 D-----QIQNAQYLLQNSVK 75 (82)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57889999988875
No 15
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=71.07 Aligned_cols=70 Identities=16% Similarity=0.299 Sum_probs=54.5
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
..+.+|.|| -+++|.|||++|.++|+|+++|||+|.|-.. . + ...+=.|.|++.
T Consensus 4 ~~~~~i~Ip-------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~-----------~----~~~~~~v~I~G~- 57 (76)
T 2p2r_A 4 TTSHELTIP-------NDLIGCIIGRQGAKINEIRQMSGAQIKIANP---V-----------E----GSTDRQVTITGS- 57 (76)
T ss_dssp CEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---C-----------T----TCSEEEEEEEEC-
T ss_pred ceEEEEEEC-------hHHcceEECCCChHHHHHHHHHCCEEEEcCC---C-----------C----CCCeEEEEEEeC-
Confidence 345678887 3789999999999999999999999999742 0 1 123447888885
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .+++|+++|+++|.
T Consensus 58 ~~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 58 AA-----SISLAQYLINVRLS 73 (76)
T ss_dssp HH-----HHHHHHHHHHHHHT
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 43 57889999999886
No 16
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.39 E-value=2e-07 Score=71.00 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=54.3
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.+|.|| -+++|.|||++|.|+|+|+++|||+|.|-... + ...+=.|.|++..
T Consensus 6 ~~~~i~Ip-------~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~---------------~~~~r~v~I~G~~- 59 (82)
T 1wvn_A 6 TTHELTIP-------NNLIGCIIGRQGANINEIRQMSGAQIKIANPV---E---------------GSSGRQVTITGSA- 59 (82)
T ss_dssp EEEEEEEE-------GGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---T---------------TCSEEEEEEEECH-
T ss_pred EEEEEEEc-------hHhccceeCCCchhHHHHHHHhCCEEEEecCC---C---------------CCCceEEEEEcCH-
Confidence 45678888 37899999999999999999999999997420 0 1234478888743
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
+ .+++|+++|++++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 60 A-----SISLAQYLINARLS 74 (82)
T ss_dssp H-----HHHHHHHHHHHHTC
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 2 57899999999987
No 17
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=3e-07 Score=71.14 Aligned_cols=65 Identities=31% Similarity=0.568 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.+|.|| .+++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|++..
T Consensus 10 ~~~~i~VP-------~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~~- 60 (83)
T 2dgr_A 10 TTIQVRVP-------YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGMP- 60 (83)
T ss_dssp EEEEEECC-------HHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEECT-
T ss_pred eEEEEEeC-------hHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcCH-
Confidence 45667787 48999999999999999999999999995321 122 47777754
Q ss_pred hhHHHHHHHHHHHHHHhcc
Q 022661 221 EDIINSRLDHAVAILENLL 239 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL 239 (294)
+ .+++|+++|++++
T Consensus 61 e-----~v~~A~~~I~~~i 74 (83)
T 2dgr_A 61 E-----NVDRAREEIEAHI 74 (83)
T ss_dssp T-----THHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHH
Confidence 3 4678888888764
No 18
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.35 E-value=5.1e-07 Score=67.34 Aligned_cols=65 Identities=17% Similarity=0.357 Sum_probs=50.4
Q ss_pred EEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022661 143 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 222 (294)
Q Consensus 143 ~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~ 222 (294)
..+.|| -.++|+||||+|.++|+|+++|||+|.|--.|+ .+=-|.|++. ++
T Consensus 7 ~~i~I~-------~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--------------------~~~~V~I~G~-~~- 57 (71)
T 1vig_A 7 VEINID-------HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE--------------------KSNLIRIEGD-PQ- 57 (71)
T ss_dssp EEEEEC-------SSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--------------------SSEEEEEEES-SH-
T ss_pred EEEEEC-------HHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC--------------------cccEEEEEcC-HH-
Confidence 456677 368899999999999999999999999964432 0116888886 33
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022661 223 IINSRLDHAVAILENLLK 240 (294)
Q Consensus 223 ~~~~rl~~A~e~Ie~LL~ 240 (294)
.+++|+++|+.+++
T Consensus 58 ----~v~~A~~~I~~i~~ 71 (71)
T 1vig_A 58 ----GVQQAKRELLELAS 71 (71)
T ss_dssp ----HHHHHHHHHHHTCC
T ss_pred ----HHHHHHHHHHHHhC
Confidence 47889999998753
No 19
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=75.21 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=52.3
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+.+|.|| -++||+|||+.|.|+|+|+++|||+|.|.-.+. .+.+-.|.|++. ++
T Consensus 12 ~~~i~Ip-------~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~-~e 65 (106)
T 2hh3_A 12 GIDVPVP-------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD 65 (106)
T ss_dssp CEEEEEE-------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-HH
T ss_pred EEEEEEC-------HHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-HH
Confidence 4567887 378999999999999999999999999974210 123447888874 33
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022661 222 DIINSRLDHAVAILENLLK 240 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+++|+++|++++.
T Consensus 66 -----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 -----RCEHAARIINDLLQ 79 (106)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57889999998875
No 20
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.33 E-value=3e-07 Score=72.06 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+..|.||. .++|.||||+|.|+|+|+++|||+|.|-..++ +.=.|.|++. +
T Consensus 17 ~t~~i~Ip~-------~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~ 68 (94)
T 2cte_A 17 ASATVAIPK-------EHHRFVIGKNGEKLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-K 68 (94)
T ss_dssp EEEEEECCT-------TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-H
T ss_pred eEEEEEECh-------HHeeeeECCCChhHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-H
Confidence 456788883 57899999999999999999999999953211 1237899886 4
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
+ .+++|+++|+.++.
T Consensus 69 e-----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 69 E-----GIEKARHEVLLISA 83 (94)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHhh
Confidence 3 56788888888764
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.33 E-value=2.5e-07 Score=71.59 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=53.1
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
+.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|... . ++ ..+=.|.|++.
T Consensus 13 ~~~~~i~Ip-------~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~-----------~~----~~~~~v~I~G~- 66 (89)
T 1j5k_A 13 IITTQVTIP-------KDLAGSIIGKGGQRIKQIRHESGASIKIDEP---L-----------EG----SEDRIITITGT- 66 (89)
T ss_dssp EEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---C-----------SS----SSEEEEEEEEE-
T ss_pred eEEEEEEEC-------hhhcceeECCCCHhHHHHHHHhCCeEEecCC---C-----------CC----CCccEEEEEcC-
Confidence 455678888 4799999999999999999999999999631 0 00 12336888875
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .+++|+++|++++.
T Consensus 67 ~e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 67 QD-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 33 56789999988875
No 22
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=2.7e-07 Score=73.88 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=54.7
Q ss_pred eeEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEec
Q 022661 139 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAE 218 (294)
Q Consensus 139 vk~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~ 218 (294)
+.++..|.|| ..++|+||||+|.|+|+|+++|||+|.|--.|+ ++=.|.|++.
T Consensus 15 ap~~~~i~Ip-------~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--------------------~~~~V~I~G~ 67 (104)
T 2ctk_A 15 VPVTIEVEVP-------FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--------------------QSDIIAITGL 67 (104)
T ss_dssp SCEEEEEECC-------HHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--------------------TCCEEEEEEC
T ss_pred CCEEEEEEEC-------hHHccceeCCCchHHHHHHHHHCCEEEecCCCC--------------------CcceEEEEcC
Confidence 4466778888 478999999999999999999999999964332 0117899886
Q ss_pred CchhHHHHHHHHHHHHHHhccC
Q 022661 219 FPEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 219 ~~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
. + .+++|+++|+.++.
T Consensus 68 ~-e-----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 68 A-A-----NLDRAKAGLLERVK 83 (104)
T ss_dssp H-H-----HHHHHHHHHHHHHH
T ss_pred H-H-----HHHHHHHHHHHHHh
Confidence 3 3 57889999999875
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.29 E-value=2.8e-07 Score=68.98 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=53.1
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
....++.|| -+.+|.|||++|.++|+|+++|||+|.|-..|+ .+=-|.|++.
T Consensus 4 ~~~~~i~ip-------~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~- 55 (73)
T 2axy_A 4 TLTIRLLMH-------GKEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP- 55 (73)
T ss_dssp CEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-
T ss_pred eEEEEEEEC-------hhHeeeEECCCCHHHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-
Confidence 345678887 478999999999999999999999999975421 1225788886
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .+.+|+++|.++|.
T Consensus 56 ~~-----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 56 TN-----AIFKAFAMIIDKLE 71 (73)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHh
Confidence 43 56789999988775
No 24
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.17 E-value=5.5e-07 Score=75.39 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=55.9
Q ss_pred eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
..+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..|. | +.++.-.|.|++ +
T Consensus 84 ~~~~~i~vp-------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-------------~---~~~~~~~v~I~G-~ 139 (163)
T 3krm_A 84 KLETHIRVP-------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-------------P---DENDQVIVKIIG-H 139 (163)
T ss_dssp CEEEEEEEE-------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC-------------C---CTTSEEEEEEEE-C
T ss_pred ceEEEEEcC-------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCC-------------C---CCCCceEEEEEe-C
Confidence 345678887 378999999999999999999999999975432 1 123444788988 4
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
++ .+++|.++|+++|.
T Consensus 140 ~~-----~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 140 FY-----ASQMAQRKIRDILA 155 (163)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 43 57889999999886
No 25
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=1.5e-06 Score=68.47 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=49.9
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+..+.||. .++|+||||+|.|+|+|+++|||+|.|-..|+. .+=.|.|++. ++
T Consensus 18 t~~i~Ip~-------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-------------------~~~~V~I~G~-~e 70 (95)
T 2ctm_A 18 SEDVPLDH-------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-------------------DPNCVTVTGL-PE 70 (95)
T ss_dssp CEEEECCT-------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-------------------CTTEEEEESC-HH
T ss_pred EEEEEECH-------HHccccCCCCcchHHHHHHHHCCeEEecCCCCC-------------------CCcEEEEEcC-HH
Confidence 45677883 567889999999999999999999999654431 1236889875 33
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022661 222 DIINSRLDHAVAILENLLK 240 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+++|++.|+.++.
T Consensus 71 -----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 71 -----NVEEAIDHILNLEE 84 (95)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 46677777777653
No 26
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.11 E-value=2.8e-06 Score=67.13 Aligned_cols=69 Identities=7% Similarity=0.198 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+..|.|| -.++|+|||++|.|+|+|+++|||+|.|--.|... ...-.|.|++. .+
T Consensus 18 ~~~i~Ip-------~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~-----------------~~~~~V~I~G~-~e 72 (97)
T 2ctl_A 18 KLSVTVD-------PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN-----------------QPQDQITITGY-EK 72 (97)
T ss_dssp EEEEECC-------TTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS-----------------SCSSEEEEESC-HH
T ss_pred eEEEEEC-------HHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC-----------------CCccEEEEEeC-HH
Confidence 4567787 36788999999999999999999999996543210 12336888875 33
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022661 222 DIINSRLDHAVAILENLLK 240 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+.+|+++|+.++.
T Consensus 73 -----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 -----NTEAARDAILRIVG 86 (97)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 46678888887764
No 27
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.95 E-value=1.1e-05 Score=67.10 Aligned_cols=71 Identities=17% Similarity=0.346 Sum_probs=52.8
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+.++.|| -+++|+|||++|.|+|+|+++|||+|.|--.+.. . ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp-------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------------~-~~~~r~v~I~G-~~~ 58 (164)
T 2jvz_A 3 VQEIMIP-------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---------------N-TNVDKPLRIIG-DPY 58 (164)
T ss_dssp EEEEEEC-------TTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS---------------S-SSSCEEEEEEE-CHH
T ss_pred EEEEEec-------hhheeEEECCChHHHHHHHHHhCCeEEEecCCCC---------------C-CCCceEEEEEc-CHH
Confidence 4568888 3679999999999999999999999999532210 0 12334688887 333
Q ss_pred hHHHHHHHHHHHHHHhccCC
Q 022661 222 DIINSRLDHAVAILENLLKP 241 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~p 241 (294)
.+.+|.++|.+++..
T Consensus 59 -----~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 59 -----KVQQACEMVMDILRE 73 (164)
T ss_dssp -----HHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHHh
Confidence 577899999998874
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.94 E-value=5.8e-06 Score=70.09 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=51.4
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..... ..+ ..+=.|.|++ +++
T Consensus 105 ~~~i~vp-------~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~--------------~~~-~~~~~v~I~G-~~~ 161 (174)
T 1j4w_A 105 EFNFIVP-------TGKTGLIIGKGGETIKSISQQSGARIELQRNPPP--------------NAD-PNMKLFTIRG-TPQ 161 (174)
T ss_dssp EEEEEEE-------TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTT--------------TSC-TTEEEEEEEC-CHH
T ss_pred EEEEEEC-------hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCC--------------CCC-CCceEEEEEC-CHH
Confidence 4567887 2789999999999999999999999999864210 000 1223577777 433
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 022661 222 DIINSRLDHAVAILENLL 239 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL 239 (294)
.+++|+++|+++|
T Consensus 162 -----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 -----QIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhC
Confidence 5788999998875
No 29
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.78 E-value=1e-05 Score=67.29 Aligned_cols=60 Identities=22% Similarity=0.438 Sum_probs=46.9
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 236 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 236 (294)
+++|+|||++|.|+|+|+++|||+|.|-.... ...+=.|.|++. ++ .+++|.++|+
T Consensus 100 ~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------------------~~~~~~v~I~G~-~~-----~v~~A~~~I~ 155 (164)
T 2jvz_A 100 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD-----RCEHAARIIN 155 (164)
T ss_dssp TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT------------------TSSEEEEEEESC-HH-----HHHHHHHHHH
T ss_pred hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC------------------CCCcEEEEEEcC-HH-----HHHHHHHHHH
Confidence 78999999999999999999999999975321 012346778774 33 5788999998
Q ss_pred hccC
Q 022661 237 NLLK 240 (294)
Q Consensus 237 ~LL~ 240 (294)
++|.
T Consensus 156 ~~i~ 159 (164)
T 2jvz_A 156 DLLQ 159 (164)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 30
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.72 E-value=1e-05 Score=67.47 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=52.4
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.++.|| -+++|+|||++|.++|+|+++|||+|.|.+... |+ ..+=.|.|++ ++
T Consensus 89 ~~~~i~vp-------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~-------------~~----~~~~~v~I~G-~~ 143 (160)
T 2jzx_A 89 VTLRLVVP-------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML-------------PN----STERAITIAG-IP 143 (160)
T ss_dssp EEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCS-------------TT----CCEEEEEEEE-CH
T ss_pred EEEEEEEC-------hhheeeEECCCCHHHHHHHHHhCCeEEECCCCC-------------CC----CCceEEEEEc-CH
Confidence 45678888 389999999999999999999999999975210 11 1334688888 43
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
+ .+++|+++|.+++.
T Consensus 144 ~-----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 144 Q-----SIIECVKQICVVML 158 (160)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 56788888887753
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.71 E-value=1.6e-05 Score=66.20 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=50.1
Q ss_pred eeEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEec
Q 022661 139 VKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAE 218 (294)
Q Consensus 139 vk~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~ 218 (294)
+..+.++.|| -..+|.|||++|.++|+|+++|||+|.|-..|+ .+-.|.|++.
T Consensus 3 ~~~~~~~~vp-------~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--------------------~~r~v~I~G~ 55 (160)
T 2jzx_A 3 VTLTIRLLMH-------GKEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP 55 (160)
T ss_dssp CEEEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT--------------------TEEEEEEEEE
T ss_pred ccEEEEEEEc-------hhheeeeECCCcHHHHHHHHHHCCEEEEcCCCC--------------------CceEEEEEeC
Confidence 4566788888 478999999999999999999999999975321 1236778775
Q ss_pred CchhHHHHHHHHHHHHHHhcc
Q 022661 219 FPEDIINSRLDHAVAILENLL 239 (294)
Q Consensus 219 ~~~~~~~~rl~~A~e~Ie~LL 239 (294)
++ .+.+|...|.+++
T Consensus 56 -~~-----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 56 -TN-----AIFKAFAMIIDKL 70 (160)
T ss_dssp -HH-----HHHHHHHHHHHHH
T ss_pred -HH-----HHHHHHHHHHHHH
Confidence 22 4556666665544
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.71 E-value=1.6e-05 Score=67.36 Aligned_cols=68 Identities=24% Similarity=0.463 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
+.++.|| -+++|+|||++|.++|+|+++|||+|.|-.. +. ...+-.|.|++. ++
T Consensus 4 ~~~~~vp-------~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~--------------~~~~r~v~I~G~-~~ 57 (174)
T 1j4w_A 4 MIDVPIP-------RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----DG--------------TTPERIAQITGP-PD 57 (174)
T ss_dssp EEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEEECC----TT--------------SCSEEEEEEEEC-HH
T ss_pred EEEEEEC-------hhheeeeecCCchHHHHHHHHhCCEEEEecC----CC--------------CCCccEEEEEeC-HH
Confidence 3567777 3789999999999999999999999999631 10 012336778775 32
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022661 222 DIINSRLDHAVAILENLLK 240 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+.+|+++|.+++.
T Consensus 58 -----~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 58 -----RAQHAAEIITDLLR 71 (174)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 56788888888875
No 33
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.60 E-value=2.1e-05 Score=62.09 Aligned_cols=65 Identities=14% Similarity=0.303 Sum_probs=49.2
Q ss_pred EEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhh-CCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 143 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMT-ECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 143 ~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eT-GckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
..|.||. .+++.||||+|.|+|+|+++| ||+|.|--.|+. .=.|.|.+.+.
T Consensus 19 ~~i~Ip~-------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~--------------------~~~V~I~G~~~- 70 (95)
T 2ctj_A 19 VEVSIPA-------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG--------------------SDTVVIRGPSS- 70 (95)
T ss_dssp EEEECCH-------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT--------------------CCEEEEESCHH-
T ss_pred EEEEECH-------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC--------------------cceEEEEcCHH-
Confidence 4577873 567789999999999999999 999988644331 11688887542
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022661 222 DIINSRLDHAVAILENLLK 240 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+++|+++|+.++.
T Consensus 71 -----~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 71 -----DVEKAKKQLLHLAE 84 (95)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 56788998888764
No 34
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.59 E-value=4.3e-05 Score=67.60 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=43.5
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 236 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 236 (294)
..+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. +. .++.|...|+
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~Ar~~i~ 155 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY-------------------------EVAIIGD-YE-----RAMAAKQAIE 155 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS-------------------------EEEEEEE-HH-----HHHHHHHHHH
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC-------------------------EEEEEeC-hH-----HHHHHHHHHH
Confidence 469999999999999999999999999652 3555553 22 5678899999
Q ss_pred hccCC
Q 022661 237 NLLKP 241 (294)
Q Consensus 237 ~LL~p 241 (294)
+|+.-
T Consensus 156 ~li~g 160 (191)
T 1tua_A 156 MLAEG 160 (191)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 99874
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.58 E-value=2.9e-05 Score=65.87 Aligned_cols=73 Identities=15% Similarity=0.313 Sum_probs=52.1
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.++.|| -.++|+|||++|.++|+|+++|||+|.|--.+... ++ ..+=.|.|++. +
T Consensus 6 ~~~~i~vp-------~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-----------~~----~~er~v~I~G~-~ 62 (178)
T 2anr_A 6 YFLKVLIP-------SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-----------PG----TTERVCLIQGT-I 62 (178)
T ss_dssp EEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-----------TT----SSEEEEEEEEC-H
T ss_pred EEEEEEEC-------hhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-----------CC----CCCceEEEEeC-H
Confidence 34678888 37899999999999999999999999996432110 11 11224677774 2
Q ss_pred hhHHHHHHHHHHHHHHhccCC
Q 022661 221 EDIINSRLDHAVAILENLLKP 241 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~p 241 (294)
+ .+.+|+++|.+++.-
T Consensus 63 ~-----~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 63 E-----ALNAVHGFIAEKIRE 78 (178)
T ss_dssp H-----HHHHHHHHHHHHHTC
T ss_pred H-----HHHHHHHHHHHHHhc
Confidence 2 467888888888764
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.55 E-value=2.9e-05 Score=65.84 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
.+.+|.|| .+++|+|||++|.|+|+|+++|||+|.|-..... + ...+=.|.|++..
T Consensus 104 ~~~~i~Vp-------~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~------------~----~~~~~~v~I~G~~- 159 (178)
T 2anr_A 104 NQVKIIVP-------NSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG------------I----NLQNRVVTVSGEP- 159 (178)
T ss_dssp GEEEEEEE-------HHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESSH-
T ss_pred eEEEEEEc-------hhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC------------C----CCCceEEEEEcCH-
Confidence 35678888 4899999999999999999999999999753210 0 0122357777642
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
..+++|+++|.++|.
T Consensus 160 -----~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 160 -----EQNRKAVELIIQKIQ 174 (178)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 257889999998876
No 37
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.44 E-value=8e-05 Score=62.16 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=33.4
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecc
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGR 186 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGr 186 (294)
+.++.|| -.++|.|||++|.|+|+|+++|||+|.|--.
T Consensus 4 ~~~~~ip-------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~ 41 (163)
T 3krm_A 4 MVQVFIP-------AQAVGAIIGKKGQHIKQLSRFASASIKIAPP 41 (163)
T ss_dssp EEEEEEE-------GGGHHHHHCGGGHHHHHHHHHHTCEEEECCC
T ss_pred EEEEEec-------hhhcceeECCCcHHHHHHHHHHCCeEEEcCC
Confidence 4567888 3789999999999999999999999999753
No 38
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.36 E-value=8.4e-05 Score=66.84 Aligned_cols=53 Identities=26% Similarity=0.492 Sum_probs=43.8
Q ss_pred eeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHHh
Q 022661 158 FVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILEN 237 (294)
Q Consensus 158 FvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~ 237 (294)
.+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. +. .++.|...|++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~A~~~i~~ 187 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK-------------------------TVAIIGN-PI-----QIEIAKTAIEK 187 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT-------------------------EEEEEEC-HH-----HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe-------------------------EEEEEeC-HH-----HHHHHHHHHHH
Confidence 59999999999999999999999999641 3666663 22 56889999999
Q ss_pred ccCC
Q 022661 238 LLKP 241 (294)
Q Consensus 238 LL~p 241 (294)
++.-
T Consensus 188 li~g 191 (219)
T 2e3u_A 188 LARG 191 (219)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9964
No 39
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.27 E-value=0.00011 Score=58.05 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=50.1
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCe-EEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECR-VFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 220 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGck-I~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~ 220 (294)
...+.|| -..+|.+|||+|.|+|+|+++|||+ |.|-- ++=.|.|.+.+.
T Consensus 16 i~~i~I~-------~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------------------ddG~V~I~g~~~ 65 (91)
T 2cpq_A 16 HEEFVVR-------EDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------------------DTGTFRIYGESA 65 (91)
T ss_dssp EEEEECC-------HHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------------------TTTEEEEEESSH
T ss_pred EEEEEEC-------hHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------------------CCCEEEEEECCH
Confidence 3456677 3689999999999999999999998 99931 112799999775
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
+ .+++|+++|+.+-.
T Consensus 66 e-----a~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 66 D-----AVKKARGFLEFVED 80 (91)
T ss_dssp H-----HHHHHHHHHSCCCC
T ss_pred H-----HHHHHHHHHHhhhe
Confidence 4 56889999877654
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.07 E-value=0.00033 Score=71.67 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=51.1
Q ss_pred ceeEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEe
Q 022661 138 VVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEA 217 (294)
Q Consensus 138 ~vk~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a 217 (294)
..-+...+-|| -..||.||||+|.|+|.|+++|||+|.|-- +=.|.|.+
T Consensus 564 ~ap~~~~~~I~-------~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------------------------~G~V~I~~ 612 (630)
T 3u1k_A 564 NGPVVETVQVP-------LSKRAKFVGPGGYNLKKLQAETGVTISQVD------------------------EETFSVFA 612 (630)
T ss_dssp TCCEEEEEECC-------HHHHHHHHCGGGHHHHHHHHHHCCEEEECS------------------------SSEEEEEE
T ss_pred cCCeEEEEEeC-------hhHhheeECCCChhHHHHHHHHCCEEEEcC------------------------CcEEEEEe
Confidence 33345667787 367999999999999999999999998841 12799999
Q ss_pred cCchhHHHHHHHHHHHHHHhccC
Q 022661 218 EFPEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 218 ~~~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+.+ .+++|+++|+.+++
T Consensus 613 ~~~~-----~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 613 PTPS-----AMHEARDFITEICK 630 (630)
T ss_dssp SSHH-----HHHHHHHHTTC---
T ss_pred CCHH-----HHHHHHHHHHHHhC
Confidence 8754 67899999988763
No 41
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.71 E-value=0.0053 Score=55.07 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=49.3
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 221 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~ 221 (294)
..+|.|| -+.+|.|+||.|.|.|.|+++|||+|.|--. .=.|.|.+.+..
T Consensus 35 i~~i~IP-------~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----------------------~g~V~I~~~~~t 84 (219)
T 2e3u_A 35 EEYVKIP-------KDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----------------------TGEVWITSTKET 84 (219)
T ss_dssp EEEEECC-------HHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----------------------TCEEEEEECTTC
T ss_pred EEEEEeC-------HHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----------------------CCEEEEecCCCC
Confidence 4568888 3678999999999999999999999999421 114667664410
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022661 222 DIINSRLDHAVAILENLLK 240 (294)
Q Consensus 222 ~~~~~rl~~A~e~Ie~LL~ 240 (294)
.. -..+++|.++|+.+..
T Consensus 85 ~d-~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 85 ED-PLAVWKARDIVLAIGR 102 (219)
T ss_dssp CS-HHHHHHHHHHHHHHHT
T ss_pred CC-HHHHHHHHHHHHHHhc
Confidence 00 1257899999998874
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.67 E-value=0.0056 Score=51.06 Aligned_cols=71 Identities=21% Similarity=0.394 Sum_probs=50.0
Q ss_pred EEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCC-eEEEecccCCCCchhhhhccCCCCCCCCCCCc-EEEEEecCc
Q 022661 143 IRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTEC-RVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPL-HVLVEAEFP 220 (294)
Q Consensus 143 ~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGc-kI~IRGrGS~kd~~ke~~lrg~p~~ehl~epL-HVlI~a~~~ 220 (294)
..|.|| + +.+|++||-+|.|+|.+++.||| +|.|.+..... .+ .++.+ -|.|++.-
T Consensus 69 ~~v~Vp-----~--~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~----------~~----~~~~~~~vtI~G~~- 126 (144)
T 2qnd_A 69 DVIQVP-----R--NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN----------VP----QEEGMVPFVFVGTK- 126 (144)
T ss_dssp EEEEEE-----G--GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----------CC----CCTTEEEEEEEEEH-
T ss_pred EEEEEC-----H--HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----------cc----ccCCeeEEEEEeCH-
Confidence 556666 3 78999999999999999999998 99998642210 00 12222 35666642
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022661 221 EDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 221 ~~~~~~rl~~A~e~Ie~LL~ 240 (294)
..++.|.++|+..|.
T Consensus 127 -----~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 127 -----DSIANATVLLDYHLN 141 (144)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 257889999988774
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.17 E-value=0.0054 Score=63.75 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=8.6
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 236 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 236 (294)
..+|.+|||+|.|+|.|+++||++|.|--. =.|.|.+.+.+ .+++|++.|+
T Consensus 579 ~ki~~vig~gg~~i~~i~~~tg~~idi~dd------------------------G~v~I~~~~~~-----~~~~A~~~i~ 629 (726)
T 4aid_A 579 DKIREVIGSGGKVIREIVATTGAKVDINDD------------------------GVVKVSASDGA-----KIKAAIDWIK 629 (726)
T ss_dssp -----------------------------------------------------------CCSCHH-----HHHHHHHC--
T ss_pred HHHHhhcCCCchhHHHHHHHHCCceeEECC------------------------ceEEEEeCCHH-----HHHHHHHHHH
Confidence 568999999999999999999999987532 24566665533 5667777777
Q ss_pred hccCC
Q 022661 237 NLLKP 241 (294)
Q Consensus 237 ~LL~p 241 (294)
.++..
T Consensus 630 ~i~~~ 634 (726)
T 4aid_A 630 SITDE 634 (726)
T ss_dssp -----
T ss_pred HHhhh
Confidence 77653
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.72 E-value=0.041 Score=53.25 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=51.1
Q ss_pred eeEEEEEecCCCCCCCCCceeeEEeCCCC--chHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEE
Q 022661 139 VKRVIRLDVPVDKYPNQFNFVGRILGPRG--NSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVE 216 (294)
Q Consensus 139 vk~~~KI~IPv~~yP~~~NFvGrILGPrG--~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~ 216 (294)
-+.+.++.|| ..|.+.|||.+| .++++|.++|||+|.+=-.++-+.. +. ...=-|.|+
T Consensus 28 ~~VTl~v~Ip-------~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~---------~~----~ks~~VtIt 87 (376)
T 3n89_A 28 TRVTLNMEFE-------SQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTT---------PD----PFAQQVTIT 87 (376)
T ss_dssp TEEEEEEECC-------GGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSS---------CC----TTTTEEEEE
T ss_pred CEEEEEEEEc-------hhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccC---------Cc----CCCCeEEEE
Confidence 3567778888 466777999999 9999999999999999544311100 00 011148888
Q ss_pred ecCchhHHHHHHHHHHHHHHhc
Q 022661 217 AEFPEDIINSRLDHAVAILENL 238 (294)
Q Consensus 217 a~~~~~~~~~rl~~A~e~Ie~L 238 (294)
+.- +.+++|.+.|.++
T Consensus 88 G~~------enVE~AR~~I~~l 103 (376)
T 3n89_A 88 GYF------GDVDRARMLMRRN 103 (376)
T ss_dssp EEH------HHHHHHHHHHHHS
T ss_pred cCH------HHHHHHHHHHHhc
Confidence 752 3577888888885
No 45
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.61 E-value=0.095 Score=41.45 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=44.5
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHh-hCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAM-TECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 219 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~e-TGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~ 219 (294)
.+.+|.||.+ |-+.|||++|.|+|+|+++ ++|+|.+=. +++ -|-|++.
T Consensus 27 ~t~~i~vp~~-------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------------------~~~-~ItI~G~- 75 (102)
T 2ctf_A 27 TVSSVAAPSW-------LHRFIIGKKGQNLAKITQQMPKVHIEFTE----------------------GED-KITLEGP- 75 (102)
T ss_dssp EEEEEECCST-------THHHHHTTTTCHHHHHHHHCSSSEEEECS----------------------SSC-EEEEEEC-
T ss_pred EEEEEEeCHH-------HHhhhcCCCCccHHHHHHHcCCcEEEeCC----------------------CCC-EEEEECC-
Confidence 4677888844 4556999999999999996 588876542 011 4777665
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022661 220 PEDIINSRLDHAVAILENLLK 240 (294)
Q Consensus 220 ~~~~~~~rl~~A~e~Ie~LL~ 240 (294)
.+ .+.+|.+.|++++.
T Consensus 76 -~~----~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 76 -TE----DVSVAQEQIEGMVK 91 (102)
T ss_dssp -HH----HHHHHHHHHHHHHH
T ss_pred -HH----HHHHHHHHHHHHHH
Confidence 32 45677777777664
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=90.82 E-value=0.049 Score=45.31 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=26.6
Q ss_pred EEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhC
Q 022661 142 VIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTE 178 (294)
Q Consensus 142 ~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTG 178 (294)
++++.|| -.++|.+||++|.++|+|++++|
T Consensus 5 ~~~~~Vp-------~~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 5 HEQFIVR-------EDLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp EEEEECC-------GGGHHHHHCGGGHHHHHHHTSTT
T ss_pred EEEEEEC-------CcceeeEECCChhHHHHHHHHHC
Confidence 4667776 37899999999999999999999
No 47
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=88.55 E-value=0.085 Score=44.74 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=27.6
Q ss_pred CceeeEEeCCCCchHHHHHHhhCCeEEEe
Q 022661 156 FNFVGRILGPRGNSLKRVEAMTECRVFIR 184 (294)
Q Consensus 156 ~NFvGrILGPrG~TlK~LE~eTGckI~IR 184 (294)
-..+|.||||.|+.++.||..|++.|.|-
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 57899999999999999999999999997
No 48
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=88.20 E-value=0.093 Score=54.52 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCC
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKD 191 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd 191 (294)
..+|.+|||+|.|+|.|.++||++|-|...|.+.-
T Consensus 569 ~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I 603 (723)
T 3cdi_A 569 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 603 (723)
T ss_dssp -----------------------------------
T ss_pred HHhcccccccceeeeeeehhhCceEEecCCccEEE
Confidence 46788999999999999999999999987665543
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=85.88 E-value=0.15 Score=44.80 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=32.3
Q ss_pred EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEec
Q 022661 141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRG 185 (294)
Q Consensus 141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRG 185 (294)
.+.+|.|| + +-+|.|+|-.|.|.|.|++.+||+|.|-.
T Consensus 4 ~~~~i~VP-----~--~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 4 PRIYVKVK-----P--ERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CCEEEECC-----G--GGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred cceEEECC-----H--HHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 34567777 3 77899999999999999999999999953
No 50
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=80.83 E-value=0.93 Score=43.79 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=39.6
Q ss_pred eeeEEeCCCC--chHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHH
Q 022661 158 FVGRILGPRG--NSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAIL 235 (294)
Q Consensus 158 FvGrILGPrG--~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~I 235 (294)
++..|||-+| .++++|.++|||+|..=..++..+. ..+.-.|.|++ .. ..+..|.+.|
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~--------------~~~~~~ItItG--s~----e~V~~Ark~I 255 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET--------------RGNIYEIKVVG--NI----DNVLKARRYI 255 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC-----------------------CCEEEEEEES--CH----HHHHHHHHHH
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc--------------cCCceEEEEEe--CH----HHHHHHHHHH
Confidence 3556999998 5669999999999998655442210 01122566666 33 2567899999
Q ss_pred Hhcc
Q 022661 236 ENLL 239 (294)
Q Consensus 236 e~LL 239 (294)
..+|
T Consensus 256 ~~lL 259 (376)
T 3n89_A 256 MDLL 259 (376)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 9987
No 51
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=69.72 E-value=0.63 Score=48.60 Aligned_cols=32 Identities=19% Similarity=0.551 Sum_probs=10.9
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccC
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGS 188 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS 188 (294)
..+|.+|||+|.++|.|.++||++|.|-..|.
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~ 638 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIEDDGT 638 (757)
T ss_dssp --------------CTTCCCCCSCC-------
T ss_pred HHeehcccccceeeehhhHhhCCEEEecCCce
Confidence 45677999999999999999999998865433
No 52
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=65.08 E-value=14 Score=32.77 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=49.9
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 236 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 236 (294)
+.+.|++||+|.-+..|.+.++|+|.| |. ++ .|+|.+.++.... .+..|+..++
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----NG-------------------~IWi~~~~~~~~~--~~~~ai~~~e 210 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----NG-------------------RIHLECPNEDLEA--IAVMAIKIID 210 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----TT-------------------EEEEECSCHHHHH--HHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----CC-------------------EEEEecCCHHHHH--HHHHHHHHHH
Confidence 678899999999999999999999988 43 11 6899988765433 6777888887
Q ss_pred hccCCCCcchhHHHH
Q 022661 237 NLLKPVDESLDHYKK 251 (294)
Q Consensus 237 ~LL~p~~e~~delK~ 251 (294)
.--- +.+-.|.+|+
T Consensus 211 ~~~~-~~~l~~~v~~ 224 (235)
T 2z0s_A 211 EEAY-TSGLTKRIIK 224 (235)
T ss_dssp HCSC-CTTCHHHHHH
T ss_pred hhhh-hhhHHHHHHH
Confidence 6544 3445555553
No 53
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=55.58 E-value=2.3 Score=35.80 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=26.5
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEec
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRG 185 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRG 185 (294)
+.+|..+|++|..+|.+++++|-||-|--
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 45899999999999999999999997765
No 54
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=33.79 E-value=52 Score=29.01 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=48.0
Q ss_pred ceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022661 157 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 236 (294)
Q Consensus 157 NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 236 (294)
+.+.|++|+++.-++.|.+.++|.|.| |. |. .|+|.+.+. -...+..|+..++
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~---------------------NG--~IWi~~~~~---~~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ---------------------NG--LIWVNGDRR---KVSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT---------------------TS--EEEEESCHH---HHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC---------------------Cc--EEEEeCCch---hHHHHHHHHHHHH
Confidence 567799999999999999999999988 42 11 688886432 2235667777776
Q ss_pred hccCCCCcchhHHHHHHHHHHHH
Q 022661 237 NLLKPVDESLDHYKKQQLRELAM 259 (294)
Q Consensus 237 ~LL~p~~e~~delK~~QL~ELA~ 259 (294)
.--. ..+-.|.+| +-|++.-.
T Consensus 198 ~~~~-~~~l~~~v~-~~l~~~~~ 218 (229)
T 2ba0_A 198 QEAH-TEGLTDRVA-EFIKRRKA 218 (229)
T ss_dssp HCSC-CSSHHHHHH-HHHHHHHH
T ss_pred hhhh-hhhHHHHHH-HHHHHhcc
Confidence 5433 223334444 44555433
No 55
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=30.23 E-value=11 Score=36.36 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCCCCceeeEEeCCCCchHHHHHHhh-CCeEEEec
Q 022661 152 YPNQFNFVGRILGPRGNSLKRVEAMT-ECRVFIRG 185 (294)
Q Consensus 152 yP~~~NFvGrILGPrG~TlK~LE~eT-GckI~IRG 185 (294)
-|+ ++-||..+|++|..++.|.++. |=||-|--
T Consensus 245 d~~-iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 245 VAG-LNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp STT-CCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCC-CCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 577 9999999999999999999999 99999886
No 56
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=29.09 E-value=1.2e+02 Score=28.15 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=38.7
Q ss_pred eEEeCCCCc-----hHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHH
Q 022661 160 GRILGPRGN-----SLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAI 234 (294)
Q Consensus 160 GrILGPrG~-----TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~ 234 (294)
-.|||.... .+.++-+.-|+++.+-||...+.+.| -=||.+.+++.+ .+..++.++.+.
T Consensus 334 ~nilg~~~~~~~~~~~~~~~~~p~~~~~~ygk~~~~~~rk---------------mGhv~~~~~~~~-~~~~~a~~~~~~ 397 (403)
T 3k5i_A 334 LNIIGGAAPDTHLQAAECALSIPNASIHLYSKGAAKPGRK---------------MGHITVTAPTMH-EAETHIQPLIDV 397 (403)
T ss_dssp EEEECCSSSSHHHHHHHHHTTSTTEEEEECCCCSCCTTCE---------------EEEEEEECSSHH-HHHHHHHHHHHH
T ss_pred EEEecCCccccchhHHHHHhcCCCCEEEECCCCCCCCCCe---------------eEEEEEEcCCHH-HHHHHHHHHHhh
Confidence 345565433 23444556789999999865554321 129999997744 455677777776
Q ss_pred HHh
Q 022661 235 LEN 237 (294)
Q Consensus 235 Ie~ 237 (294)
++.
T Consensus 398 ~~~ 400 (403)
T 3k5i_A 398 VDR 400 (403)
T ss_dssp HHT
T ss_pred hhh
Confidence 653
No 57
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=28.03 E-value=1.7e+02 Score=22.80 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=32.3
Q ss_pred chHHHHHHhh-CCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHHhcc
Q 022661 168 NSLKRVEAMT-ECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLL 239 (294)
Q Consensus 168 ~TlK~LE~eT-GckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~LL 239 (294)
.++..|+... +..|.||--|+ ..-++|.+++.+. +.++..++...+.|++++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-------------------EP~irvy~Ea~~~-~~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-------------------EDIVRVYAEANSQ-ESADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-------------------SSSEEEEEEESSH-HHHHHHHHHHHHHHHHHT
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-------------------ccEEEEEEEECCH-HHHHHHHHHHHHHHHHHH
Confidence 4555566654 55888997555 2467899999874 345555555555555444
No 58
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=27.77 E-value=12 Score=34.27 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCCceeeEEeCCCCchHHHH-HHhhCCeEEEec
Q 022661 152 YPNQFNFVGRILGPRGNSLKRV-EAMTECRVFIRG 185 (294)
Q Consensus 152 yP~~~NFvGrILGPrG~TlK~L-E~eTGckI~IRG 185 (294)
-|+ ++-||..+|++|+.++.| ++-.|=||-|--
T Consensus 122 d~~-iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 122 VAG-LNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp STT-CCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCC-CCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 478 999999999999999999 778899999875
No 59
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=25.66 E-value=28 Score=29.48 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.7
Q ss_pred hHHHHHHhhCCeEEEecccC
Q 022661 169 SLKRVEAMTECRVFIRGRGS 188 (294)
Q Consensus 169 TlK~LE~eTGckI~IRGrGS 188 (294)
.+|+||++.|+++..|++|-
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~~ 59 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKPC 59 (303)
T ss_dssp HHHHHHHHHTSCCEECSSSC
T ss_pred HHHHHHHHhCCeeEEcCCCC
Confidence 58999999999999999743
No 60
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=21.56 E-value=12 Score=31.56 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=36.3
Q ss_pred eeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHH-HHHHHHHHh
Q 022661 159 VGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRL-DHAVAILEN 237 (294)
Q Consensus 159 vGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl-~~A~e~Ie~ 237 (294)
.|+|||-+|-|++.||--+.--|. + .+ + +.|.+.++++-..-++.| ..|..+.++
T Consensus 44 ~glLIGK~G~TL~ALQyL~~~~vn----------------~---~~----~-~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLFNWIH----------------P---TY----G-YSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHHHHHH----------------H---HH----S-CEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHHHHhh----------------h---cC----C-ceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999988831110 0 01 2 789999988754433333 334555554
Q ss_pred cc
Q 022661 238 LL 239 (294)
Q Consensus 238 LL 239 (294)
..
T Consensus 100 V~ 101 (152)
T 2pt7_G 100 VH 101 (152)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=20.92 E-value=55 Score=29.20 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=40.3
Q ss_pred CCCCCc-eeeEEeCCCCc-------h-----HHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEec
Q 022661 152 YPNQFN-FVGRILGPRGN-------S-----LKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAE 218 (294)
Q Consensus 152 yP~~~N-FvGrILGPrG~-------T-----lK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~ 218 (294)
.|. +. .+|+||||||. | .+.+++--..+|..|-+ -..-+|+-|=-.
T Consensus 121 m~~-vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~d--------------------k~g~i~~~IGk~ 179 (229)
T 3u42_A 121 MGA-VGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND--------------------KTGAIHAPVGKA 179 (229)
T ss_dssp HHH-HHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECC--------------------TTSEEEEEEEET
T ss_pred HHH-HHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeC--------------------CCCeecccccCC
Confidence 344 54 68999999986 2 24444433336666632 124578888665
Q ss_pred C-chhHHHHHHHHHHHHHHhcc
Q 022661 219 F-PEDIINSRLDHAVAILENLL 239 (294)
Q Consensus 219 ~-~~~~~~~rl~~A~e~Ie~LL 239 (294)
+ +.+...+-+...++.|.+.+
T Consensus 180 ~f~~e~L~eNi~a~i~~i~~~k 201 (229)
T 3u42_A 180 SFPPEKLADNIRAFIRALEAHK 201 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhC
Confidence 5 34445556677777776654
No 62
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=20.84 E-value=1e+02 Score=24.26 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=31.0
Q ss_pred hhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCchh--HHHHHHHHHHHHHHhccC
Q 022661 176 MTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED--IINSRLDHAVAILENLLK 240 (294)
Q Consensus 176 eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~--~~~~rl~~A~e~Ie~LL~ 240 (294)
..|.++.|+|+|--.... + ...+|+|.|.+..|.+ .- ....+++++++.
T Consensus 47 ~~G~~~rl~G~Gmp~~~~--------~----~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~ 97 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPKY--------G----GYGNLIIKFTIKFPENHFTS----EENLKKLEEILP 97 (121)
T ss_dssp CTTCEEEETTCSCC------------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSC
T ss_pred CCCcEEEECCCCCCCCCC--------C----CCCCEEEEEEEECCCCCCCC----HHHHHHHHHHcc
Confidence 468899999999643110 1 1478999999888764 21 234666777775
No 63
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=20.02 E-value=30 Score=32.87 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCCCCceeeEEeCCCCchHHHHHHhh-CCeEEEec
Q 022661 152 YPNQFNFVGRILGPRGNSLKRVEAMT-ECRVFIRG 185 (294)
Q Consensus 152 yP~~~NFvGrILGPrG~TlK~LE~eT-GckI~IRG 185 (294)
-|+ ++-+|..+|++|+.++.+..+. |=||-|=-
T Consensus 241 d~~-iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 241 DPN-VDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp STT-SCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred CCC-ccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 477 9999999999999999999999 77887654
Done!