BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022662
         (294 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1VAZ2|RNY_DESVV Ribonuclease Y OS=Desulfovibrio vulgaris subsp. vulgaris (strain
           DP4) GN=rny PE=3 SV=1
          Length = 519

 Score = 31.6 bits (70), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 130 TWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIM-AESETAVEKEKVTL-G 187
            +I I   LG+       Y+     S + + D  E L KR++  A  E   +K+++ L G
Sbjct: 7   AYIAIGAVLGAGT----GYLLHRYVSAKRIGDANE-LAKRIVEEARKEAQAQKKEILLQG 61

Query: 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQEL 247
           Q+EI  +  ++EN   + +E ER     +  L E  +R+E+ +E+ +++       E+EL
Sbjct: 62  QDEIFNQKRELEN---EFKERERELKARDRKLEEQGERLEEKLEKATQKEHEVLAIEKEL 118

Query: 248 CRVKRDFESLKNYVSSLIS 266
            R +R   +L+  +   I+
Sbjct: 119 TRKERRLATLEEELEGKIA 137


>sp|Q728D2|RNY_DESVH Ribonuclease Y OS=Desulfovibrio vulgaris (strain Hildenborough /
           ATCC 29579 / NCIMB 8303) GN=rny PE=3 SV=1
          Length = 519

 Score = 31.6 bits (70), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 130 TWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIM-AESETAVEKEKVTL-G 187
            +I I   LG+       Y+     S + + D  E L KR++  A  E   +K+++ L G
Sbjct: 7   AYIAIGAVLGAGT----GYLLHRYVSAKRIGDANE-LAKRIVEEARKEAQAQKKEILLQG 61

Query: 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQEL 247
           Q+EI  +  ++EN   + +E ER     +  L E  +R+E+ +E+ +++       E+EL
Sbjct: 62  QDEIFNQKRELEN---EFKERERELKARDRKLEEQGERLEEKLEKATQKEHEVLAIEKEL 118

Query: 248 CRVKRDFESLKNYVSSLIS 266
            R +R   +L+  +   I+
Sbjct: 119 TRKERRLATLEEELEGKIA 137


>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66
           PE=1 SV=3
          Length = 1242

 Score = 31.2 bits (69), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 17/145 (11%)

Query: 161 DVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMER-----FALGT 215
            V EVL  + ++ ES T+    +V   +  ++  A QIE+   +++   R       +  
Sbjct: 100 HVEEVLQNQRMLLESVTS----QVAHKKSSLQTSAKQIEDRIFEVKHQHRKVENQIKMAK 155

Query: 216 NGILNEMRQRVEDLVEE---TSRQRQRAAENE-QELCRVKRDFESLKNYVSSLISVRET- 270
             ++NE+ ++   L+EE    + +R+R  E + Q +  + R FE ++N+++  +  + + 
Sbjct: 156 MVLMNELNKQANGLIEELEGITNERKRKLEQQLQSIMVLNRQFEHVQNFINWAVCSKSSV 215

Query: 271 --LLSSEKQFQTIERLFE-RPSADP 292
             L S E     ++RL E R + DP
Sbjct: 216 PFLFSKELIVFQMQRLLETRCNTDP 240


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.128    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,673,464
Number of Sequences: 539616
Number of extensions: 4019286
Number of successful extensions: 19556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 588
Number of HSP's that attempted gapping in prelim test: 17748
Number of HSP's gapped (non-prelim): 2386
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)