Query 022662
Match_columns 294
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 05:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07597 BAR_SNX8 The Bin/Amphi 88.5 18 0.00039 32.5 13.6 129 146-292 28-168 (246)
2 COG1614 CdhC CO dehydrogenase/ 84.1 0.49 1.1E-05 47.2 1.3 29 85-113 271-314 (470)
3 PF08317 Spc7: Spc7 kinetochor 84.0 37 0.00079 31.7 13.6 48 26-74 83-135 (325)
4 PF05701 WEMBL: Weak chloropla 83.1 53 0.0011 32.8 18.8 50 215-264 363-412 (522)
5 PF06008 Laminin_I: Laminin Do 81.2 40 0.00087 30.1 14.0 48 217-264 123-179 (264)
6 PF04048 Sec8_exocyst: Sec8 ex 79.5 4.6 0.0001 33.5 5.3 59 25-87 79-137 (142)
7 TIGR02132 phaR_Bmeg polyhydrox 79.1 32 0.00068 31.7 10.7 97 146-269 38-138 (189)
8 PRK00888 ftsB cell division pr 78.6 10 0.00023 30.6 6.9 54 212-271 20-75 (105)
9 PF04156 IncA: IncA protein; 77.9 24 0.00052 29.5 9.1 37 222-258 86-122 (191)
10 TIGR01005 eps_transp_fam exopo 77.2 64 0.0014 32.7 13.4 108 165-272 292-403 (754)
11 PF02208 Sorb: Sorbin homologo 75.6 1.6 3.4E-05 32.4 1.3 15 97-111 5-19 (47)
12 PF13851 GAS: Growth-arrest sp 72.6 69 0.0015 28.4 12.1 93 189-288 27-119 (201)
13 PF04156 IncA: IncA protein; 69.5 66 0.0014 26.9 12.4 20 245-264 151-170 (191)
14 PRK04863 mukB cell division pr 68.9 1.9E+02 0.0041 33.3 15.6 117 155-271 308-430 (1486)
15 PRK02224 chromosome segregatio 64.4 1.4E+02 0.003 30.7 12.5 53 26-78 378-440 (880)
16 TIGR03007 pepcterm_ChnLen poly 63.0 1.4E+02 0.0031 28.5 11.7 36 239-274 349-384 (498)
17 PF09177 Syntaxin-6_N: Syntaxi 62.5 41 0.00089 26.1 6.7 58 148-209 40-97 (97)
18 PRK02224 chromosome segregatio 59.8 2.1E+02 0.0046 29.4 26.6 48 221-268 541-588 (880)
19 PF05667 DUF812: Protein of un 59.1 1.3E+02 0.0029 31.2 11.4 70 189-258 321-390 (594)
20 PF09787 Golgin_A5: Golgin sub 58.2 83 0.0018 31.2 9.5 85 187-278 286-373 (511)
21 TIGR02169 SMC_prok_A chromosom 56.8 2.4E+02 0.0052 29.1 16.7 77 191-267 422-498 (1164)
22 PRK04456 acetyl-CoA decarbonyl 52.7 6 0.00013 40.2 0.8 24 84-107 271-302 (463)
23 PF07426 Dynactin_p22: Dynacti 51.0 62 0.0013 28.5 6.6 94 195-288 4-106 (174)
24 PF05266 DUF724: Protein of un 49.8 1.9E+02 0.0041 25.8 10.0 27 253-282 160-186 (190)
25 PRK09039 hypothetical protein; 47.6 2.6E+02 0.0056 26.7 11.3 77 188-264 80-156 (343)
26 TIGR00316 cdhC CO dehydrogenas 46.1 8.7 0.00019 39.0 0.8 24 84-107 268-299 (458)
27 cd03571 ENTH_epsin ENTH domain 45.4 12 0.00025 31.2 1.3 61 34-109 39-99 (123)
28 PRK10803 tol-pal system protei 43.6 1.7E+02 0.0036 26.8 8.5 56 202-257 39-94 (263)
29 KOG0161 Myosin class II heavy 43.5 3.2E+02 0.0069 32.7 12.3 97 188-284 1068-1165(1930)
30 TIGR01069 mutS2 MutS2 family p 43.1 3.6E+02 0.0078 28.7 11.8 39 216-258 571-609 (771)
31 PF12329 TMF_DNA_bd: TATA elem 43.0 1.5E+02 0.0033 22.7 8.0 64 190-253 6-69 (74)
32 KOG0798 Uncharacterized conser 42.6 10 0.00022 37.7 0.7 24 85-110 289-312 (380)
33 PF06160 EzrA: Septation ring 42.4 3.8E+02 0.0082 27.1 11.4 61 226-286 117-178 (560)
34 PF10174 Cast: RIM-binding pro 41.0 5E+02 0.011 28.2 14.7 100 134-241 226-339 (775)
35 PF12777 MT: Microtubule-bindi 40.7 2.2E+02 0.0047 26.8 8.9 45 183-234 2-46 (344)
36 PF00015 MCPsignal: Methyl-acc 40.7 2E+02 0.0043 23.4 11.3 27 206-232 82-108 (213)
37 PF07544 Med9: RNA polymerase 40.6 1.3E+02 0.0028 23.3 6.3 49 32-80 28-82 (83)
38 PF05278 PEARLI-4: Arabidopsis 40.4 1.3E+02 0.0028 28.8 7.5 56 22-81 204-259 (269)
39 PRK11637 AmiB activator; Provi 40.3 3.4E+02 0.0074 26.0 11.7 101 188-288 53-161 (428)
40 KOG3208 SNARE protein GS28 [In 40.2 3.2E+02 0.0068 26.1 9.8 27 188-214 7-34 (231)
41 PF11598 COMP: Cartilage oligo 39.8 47 0.001 24.2 3.5 25 214-238 12-36 (45)
42 PF03945 Endotoxin_N: delta en 39.2 2.4E+02 0.0052 23.9 8.9 63 217-287 41-113 (226)
43 PF03598 CdhC: CO dehydrogenas 39.1 11 0.00024 37.9 0.3 24 84-107 269-300 (411)
44 PF06160 EzrA: Septation ring 38.1 2.2E+02 0.0047 28.8 9.0 66 219-284 117-183 (560)
45 PF08172 CASP_C: CASP C termin 37.6 55 0.0012 30.3 4.5 42 213-254 75-123 (248)
46 PRK10244 anti-RssB factor; Pro 37.5 1E+02 0.0022 25.4 5.5 69 188-267 16-84 (88)
47 PF10146 zf-C4H2: Zinc finger- 36.9 3.4E+02 0.0074 25.0 11.0 41 190-230 5-45 (230)
48 KOG3647 Predicted coiled-coil 36.9 79 0.0017 31.2 5.6 88 23-114 145-248 (338)
49 smart00459 Sorb Sorbin homolog 36.4 19 0.0004 27.1 1.0 16 97-112 5-20 (50)
50 PF07888 CALCOCO1: Calcium bin 35.9 5.4E+02 0.012 27.1 16.6 33 219-251 215-247 (546)
51 PF07889 DUF1664: Protein of u 35.6 2.8E+02 0.0061 23.7 9.0 50 195-265 67-116 (126)
52 COG0419 SbcC ATPase involved i 34.5 5.9E+02 0.013 27.0 23.5 72 26-102 397-471 (908)
53 PF05325 DUF730: Protein of un 34.2 91 0.002 26.8 4.9 36 250-288 83-118 (122)
54 TIGR03185 DNA_S_dndD DNA sulfu 34.2 5.2E+02 0.011 26.3 19.6 40 26-65 231-270 (650)
55 PRK06342 transcription elongat 33.9 92 0.002 27.0 5.0 57 22-84 31-87 (160)
56 PF14716 HHH_8: Helix-hairpin- 33.2 49 0.0011 24.2 2.8 46 57-102 9-56 (68)
57 PRK03918 chromosome segregatio 33.0 5.5E+02 0.012 26.3 12.6 19 59-77 407-425 (880)
58 PF05600 DUF773: Protein of un 32.0 5.6E+02 0.012 26.1 11.3 98 145-250 398-497 (507)
59 COG2357 PpGpp synthetase catal 31.6 47 0.001 31.1 3.0 76 21-98 16-94 (231)
60 PF08172 CASP_C: CASP C termin 31.6 1.1E+02 0.0025 28.3 5.5 29 236-264 91-119 (248)
61 PF13949 ALIX_LYPXL_bnd: ALIX 31.0 3.7E+02 0.0081 23.7 10.1 91 196-289 22-118 (296)
62 PF14931 IFT20: Intraflagellar 30.2 3.3E+02 0.0072 22.9 8.6 78 183-260 10-109 (120)
63 PF11594 Med28: Mediator compl 29.3 60 0.0013 27.4 3.0 82 147-229 4-96 (106)
64 PF14257 DUF4349: Domain of un 29.1 1.4E+02 0.003 26.6 5.4 45 219-264 144-188 (262)
65 PF03962 Mnd1: Mnd1 family; I 29.0 4E+02 0.0088 23.5 8.4 48 156-210 29-83 (188)
66 PF15556 Zwint: ZW10 interacto 28.8 4.5E+02 0.0098 25.2 8.9 74 189-262 94-172 (252)
67 TIGR01554 major_cap_HK97 phage 28.8 2.6E+02 0.0057 26.1 7.4 43 219-261 1-43 (378)
68 PF07889 DUF1664: Protein of u 28.7 1.8E+02 0.0039 24.8 5.8 69 195-273 49-117 (126)
69 TIGR03513 GldL_gliding gliding 28.2 1.6E+02 0.0035 27.1 5.8 28 247-274 174-201 (202)
70 PRK09529 bifunctional acetyl-C 27.1 25 0.00055 37.5 0.6 23 85-107 570-600 (711)
71 PRK10884 SH3 domain-containing 27.1 3.3E+02 0.0072 24.6 7.5 67 9-79 102-168 (206)
72 KOG3119 Basic region leucine z 26.9 1.5E+02 0.0032 27.5 5.4 37 220-256 218-254 (269)
73 COG1196 Smc Chromosome segrega 26.7 8.8E+02 0.019 26.7 18.5 179 66-288 622-812 (1163)
74 PF00086 Thyroglobulin_1: Thyr 26.2 49 0.0011 24.2 1.8 14 104-117 49-62 (68)
75 PF07568 HisKA_2: Histidine ki 26.1 1.3E+02 0.0028 22.6 4.1 44 249-292 5-54 (76)
76 PLN02372 violaxanthin de-epoxi 25.6 2.3E+02 0.0049 29.3 6.8 73 139-211 368-447 (455)
77 KOG1962 B-cell receptor-associ 25.4 5.6E+02 0.012 23.9 9.0 101 147-290 100-200 (216)
78 PRK00409 recombination and DNA 24.8 6.6E+02 0.014 26.8 10.2 45 214-258 574-620 (782)
79 PF14523 Syntaxin_2: Syntaxin- 24.4 3.1E+02 0.0067 20.6 10.8 48 196-243 3-52 (102)
80 PHA02562 46 endonuclease subun 24.1 6.5E+02 0.014 24.2 22.5 54 27-80 190-243 (562)
81 PF12718 Tropomyosin_1: Tropom 23.5 3.9E+02 0.0085 22.6 6.9 51 22-73 39-89 (143)
82 PRK07021 fliL flagellar basal 23.2 32 0.0007 29.1 0.4 40 38-79 77-116 (162)
83 PF10805 DUF2730: Protein of u 22.9 4.1E+02 0.0088 21.4 7.8 64 223-289 34-99 (106)
84 COG3096 MukB Uncharacterized p 22.9 2.3E+02 0.005 32.0 6.6 48 215-262 981-1029(1480)
85 smart00787 Spc7 Spc7 kinetocho 22.7 6.8E+02 0.015 23.9 9.2 27 216-242 171-197 (312)
86 TIGR02168 SMC_prok_B chromosom 22.6 8.5E+02 0.018 25.0 17.5 33 220-252 792-824 (1179)
87 PF05278 PEARLI-4: Arabidopsis 22.0 7.2E+02 0.016 24.0 9.1 39 219-264 223-261 (269)
88 KOG0996 Structural maintenance 21.9 1.2E+03 0.025 27.4 11.8 101 141-242 364-465 (1293)
89 PF04253 TFR_dimer: Transferri 21.9 1.4E+02 0.003 23.7 3.8 64 101-166 53-118 (125)
90 PF04837 MbeB_N: MbeB-like, N- 21.7 3.5E+02 0.0076 20.2 5.7 40 229-273 10-49 (52)
91 PF12352 V-SNARE_C: Snare regi 21.4 1.8E+02 0.004 20.6 4.0 38 189-226 29-66 (66)
92 PLN02320 seryl-tRNA synthetase 21.3 5.6E+02 0.012 26.4 8.7 69 27-95 102-177 (502)
93 PF12953 DUF3842: Domain of un 20.9 21 0.00045 31.1 -1.2 22 199-220 18-40 (131)
94 KOG4687 Uncharacterized coiled 20.7 3.6E+02 0.0078 27.0 6.9 44 198-241 53-103 (389)
95 PF13864 Enkurin: Calmodulin-b 20.6 3.5E+02 0.0077 21.1 5.7 40 218-257 45-93 (98)
96 TIGR01005 eps_transp_fam exopo 20.6 9.3E+02 0.02 24.7 10.5 22 268-289 375-396 (754)
97 PF01417 ENTH: ENTH domain; I 20.3 52 0.0011 26.2 1.1 47 63-109 56-102 (125)
98 TIGR03017 EpsF chain length de 20.2 7.3E+02 0.016 23.3 11.2 101 191-291 256-364 (444)
99 PRK12785 fliL flagellar basal 20.1 41 0.0009 28.8 0.5 40 39-80 86-125 (166)
100 cd00677 S15_NS1_EPRS_RNA-bind 20.0 2.7E+02 0.0059 19.0 4.4 43 32-77 2-46 (46)
No 1
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.54 E-value=18 Score=32.51 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHH
Q 022662 146 GAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQR 225 (294)
Q Consensus 146 ~~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqr 225 (294)
..||..++.++..+.+.+|.++||---. |.+-. ++-+-..-+-+.+..+.-.. |-|+-.+.++.-
T Consensus 28 r~~I~~l~~~~~~l~~l~er~~kR~~~~----A~d~~-------~f~~~l~~l~~~~~~~~~~~----~~~~~~~~l~~~ 92 (246)
T cd07597 28 RERIRRLLESWTKLRVLAERYEKRSQQQ----AADRA-------EFARLLNSLGELTARLYPWA----GDSDTWGDINEG 92 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHhhccCCCCCCCcc----CCCccHHHHHHH
Confidence 4689999999999999999999986321 11111 11111111111111111111 334444556655
Q ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh-----------hhhHhHHHHHHHhhccccCC
Q 022662 226 VEDLVEETSRQ-RQRAAENEQELCRVKRDFESLKNYVSSLISVRETLL-----------SSEKQFQTIERLFERPSADP 292 (294)
Q Consensus 226 vedlv~eTsRQ-RqRAaENE~ELsrVk~dfesLksyVssli~vrETll-----------SsekqfqtiE~lfeRLva~~ 292 (294)
+..+-.....- ..-..+...+...| .|.||.|+.-|+++|++.- ..++..+..++=.+.+.++|
T Consensus 93 l~~~s~~~~~~s~~~~~~a~~~~~~v---lE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~ 168 (246)
T cd07597 93 LSSLSKHFQLLSDLSEDEARAEEDGV---LEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKP 168 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC
Confidence 55554332211 11111222222222 5889999999999999776 34566666666666666654
No 2
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=84.09 E-value=0.49 Score=47.18 Aligned_cols=29 Identities=45% Similarity=0.959 Sum_probs=23.5
Q ss_pred cCCccccccc--------cccccccccccC-------CCCCCCC
Q 022662 85 VPDLAHTSCG--------IRQLEGVGLVDK-------NGTPLSG 113 (294)
Q Consensus 85 vP~LAhtScG--------Ik~legVG~vDk-------~G~pls~ 113 (294)
.=.++||||| |-.++|+|.|++ +|+|.|.
T Consensus 271 ~~~~PhTSCGCFeav~FYiPEvDG~G~v~R~y~getP~GipFSt 314 (470)
T COG1614 271 FFEYPHTSCGCFEAVVFYIPEVDGIGIVHREYRGETPNGIPFST 314 (470)
T ss_pred cccCCCCccceeeEEEEeccccccceeeecCcCCCCCCCCcchh
Confidence 3467899999 788999999997 4777654
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.02 E-value=37 Score=31.66 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=29.5
Q ss_pred HHHhhhhhHHHHHHHHHh-----hhhhhhcChHHHHHHHHHHHHHHHhHHHHHH
Q 022662 26 EMERSQFQVDVLQEKLME-----VKTCIKDSEEDAKKELEVLWRRVKTTATLLT 74 (294)
Q Consensus 26 eme~~qsQVdvLq~rl~e-----vKa~~~gSeeda~KELevL~rRVKT~atLLt 74 (294)
-+.+.+..+..+.+.... +|.++.. .+|-|..++.=++-|||-+.|.+
T Consensus 83 ~I~egr~~~~~~E~~~~~~nPpLf~EY~~a-~~d~r~~m~~q~~~vK~~aRl~a 135 (325)
T PF08317_consen 83 YISEGRQIFEEIEEETYESNPPLFREYYTA-DPDMRLLMDNQFQLVKTYARLEA 135 (325)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544432 3445444 46678899999999998876543
No 4
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.10 E-value=53 Score=32.80 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 022662 215 TNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 215 Tn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssl 264 (294)
+.....+|-.-+..+-.|+-.-|..+...-.|+.++|.+.+..|.-+.+.
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~ 412 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA 412 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888889999999999999999999999999988877664
No 5
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.19 E-value=40 Score=30.12 Aligned_cols=48 Identities=31% Similarity=0.351 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHH-----HHHHHHHH----HhHHHHHHHHhhHHHHHHHHHHH
Q 022662 217 GILNEMRQRVEDLVEET-----SRQRQRAA----ENEQELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 217 ~iLneMrqrvedlv~eT-----sRQRqRAa----ENE~ELsrVk~dfesLksyVssl 264 (294)
+=|..|...++.|+.|- +.||+-|. +-+.=|+||+..|........+|
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l 179 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESL 179 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHH
Confidence 33444444444444443 33444332 22344789999995444444444
No 6
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=79.52 E-value=4.6 Score=33.50 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=49.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCC
Q 022662 25 QEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPD 87 (294)
Q Consensus 25 ~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~ 87 (294)
..+..+|.+|..++..|.+.|..+.+- ++||..||.|--+-.-++.-|..=-.+-.||.
T Consensus 79 ~~i~~sq~~i~~lK~~L~~ak~~L~~~----~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~ 137 (142)
T PF04048_consen 79 SSISESQERIRELKESLQEAKSLLGCR----REELKELWQRSQEYKEMIEILDQIEELRQVPD 137 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456778888888999999999888553 47899999999999999999998888888886
No 7
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=79.09 E-value=32 Score=31.68 Aligned_cols=97 Identities=22% Similarity=0.393 Sum_probs=76.5
Q ss_pred hhhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHH
Q 022662 146 GAYIGELLKSV----QMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNE 221 (294)
Q Consensus 146 ~~Yv~e~LksV----~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLne 221 (294)
.+|||.+|.+- .++.++|+..+..+.+ =|..+|.|-+.-+=|+..|+..||-+
T Consensus 38 Sa~IG~vLd~yL~yQKafnE~MekYLe~lNl-------------PSr~DiarvA~lvinlE~kvD~lee~---------- 94 (189)
T TIGR02132 38 SALMGNVLDLNLFYQKALNDTTGNYLEQVNV-------------PTKEDIANVASLVINLEEKVDLIEEF---------- 94 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 46788887776 7888999988876543 26677877777777777788877654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 022662 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRE 269 (294)
Q Consensus 222 Mrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrE 269 (294)
++|+++.-.-|-+.+---+.++-.|++|..+|-.-|+-++..-|
T Consensus 95 ----fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 95 ----FDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred ----HHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777777777777777888999999999999999999888776
No 8
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.61 E-value=10 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=43.8
Q ss_pred hhchhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 022662 212 ALGTNGI--LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL 271 (294)
Q Consensus 212 A~GTn~i--LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETl 271 (294)
.+|-||+ +.+++++++++-.|-...+++-+.-..|+.+++.|- .|+..+ +|+.|
T Consensus 20 ~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~----dyiEe~--AR~~L 75 (105)
T PRK00888 20 WFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ----EAIEER--ARNEL 75 (105)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH----HHHHHH--HHHHc
Confidence 4688886 679999999999999999998888888888888763 577766 56654
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.90 E-value=24 Score=29.51 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 022662 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLK 258 (294)
Q Consensus 222 Mrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLk 258 (294)
-.+++..+-.|.....++-.+++.++...+.++..+.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444555555566666666666666666655
No 10
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.24 E-value=64 Score=32.74 Aligned_cols=108 Identities=11% Similarity=0.163 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHH-HHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 022662 165 VLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLE-EMERFALGTNGILNEMRQRVEDLVEETSRQRQRA--- 240 (294)
Q Consensus 165 sLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klE-eMErfA~GTn~iLneMrqrvedlv~eTsRQRqRA--- 240 (294)
.|..+..-.+++.+.-..+..=.--.+.....||+++..++. |..++.-+...-+...++|.+.|-..-...+++.
T Consensus 292 ~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~ 371 (754)
T TIGR01005 292 RLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQA 371 (754)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333334444443333444444566777777777777754 5677766665566666777766655555555554
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 022662 241 AENEQELCRVKRDFESLKNYVSSLISVRETLL 272 (294)
Q Consensus 241 aENE~ELsrVk~dfesLksyVssli~vrETll 272 (294)
...|.|+.+.+||.+..+....+|.+-++...
T Consensus 372 ~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 372 GEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46699999999999999988887777766654
No 11
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=75.62 E-value=1.6 Score=32.42 Aligned_cols=15 Identities=53% Similarity=1.035 Sum_probs=13.6
Q ss_pred cccccccccCCCCCC
Q 022662 97 QLEGVGLVDKNGTPL 111 (294)
Q Consensus 97 ~legVG~vDk~G~pl 111 (294)
+-+|+|=||+.|+|+
T Consensus 5 ~y~gigp~De~giP~ 19 (47)
T PF02208_consen 5 HYEGIGPVDESGIPL 19 (47)
T ss_pred cCCCcCccccCCCcc
Confidence 457999999999999
No 12
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.56 E-value=69 Score=28.40 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=66.0
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 022662 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVR 268 (294)
Q Consensus 189 Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vr 268 (294)
+-|+.-..||+.|..+.+..++. +.+..+.-..|++.-...++.-++-...|.-..+|+.+|++.-+.+....
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~-------m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKL-------MAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777776666653 46777777778888888888888888888888888888888777777777
Q ss_pred HHHhhhhHhHHHHHHHhhcc
Q 022662 269 ETLLSSEKQFQTIERLFERP 288 (294)
Q Consensus 269 ETllSsekqfqtiE~lfeRL 288 (294)
+.|-.-+.+.+..+.-|+.+
T Consensus 100 k~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77766666666555555544
No 13
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.54 E-value=66 Score=26.92 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=11.9
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 022662 245 QELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 245 ~ELsrVk~dfesLksyVssl 264 (294)
+++.+.+..++.+++++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 151 KELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666555
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.93 E-value=1.9e+02 Score=33.27 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc------HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHH
Q 022662 155 SVQMVTDVMEVLVKRVIMAESETAVEKEKVTLG------QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVED 228 (294)
Q Consensus 155 sV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~------~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrved 228 (294)
.+.-+.|.++.|-++.---+.+...-+....+. +.++.....+++.+..++++.+.-.-....-++++..+++.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeElee 387 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEA 387 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777655554444333332222 45666667777777777777777666666666667666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 022662 229 LVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL 271 (294)
Q Consensus 229 lv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETl 271 (294)
+-.+-...+...++-++++.........+.+.+..+-++++.+
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666667666666666666666666666554
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=64.36 E-value=1.4e+02 Score=30.65 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=31.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhcCh----------HHHHHHHHHHHHHHHhHHHHHHHHhh
Q 022662 26 EMERSQFQVDVLQEKLMEVKTCIKDSE----------EDAKKELEVLWRRVKTTATLLTYLKS 78 (294)
Q Consensus 26 eme~~qsQVdvLq~rl~evKa~~~gSe----------eda~KELevL~rRVKT~atLLtYLKS 78 (294)
.++..+.++..|...+.++++.+...+ ++++.+++.|..+.....+.+.|++.
T Consensus 378 ~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 440 (880)
T PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE 440 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666655554211 44556677777777777777777654
No 16
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.02 E-value=1.4e+02 Score=28.49 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 022662 239 RAAENEQELCRVKRDFESLKNYVSSLISVRETLLSS 274 (294)
Q Consensus 239 RAaENE~ELsrVk~dfesLksyVssli~vrETllSs 274 (294)
+....+.++.+.+||.+..+.-...+..-+|-...+
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999988888777776665544
No 17
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=62.54 E-value=41 Score=26.10 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHh
Q 022662 148 YIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEME 209 (294)
Q Consensus 148 Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeME 209 (294)
+..++...++.+.-=++-|-+=|-++|.. -.|..|++.||.+...-|..+..++..|+
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~n----p~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKN----PSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788888888877888888888888776 67889999999999999999999888885
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=59.76 E-value=2.1e+02 Score=29.36 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 022662 221 EMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVR 268 (294)
Q Consensus 221 eMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vr 268 (294)
+++++++++-.+....+.+|.+-+.++..+..++..+..=+..+.+-+
T Consensus 541 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 588 (880)
T PRK02224 541 ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444344444444444444444444444444333
No 19
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.05 E-value=1.3e+02 Score=31.17 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=57.8
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 022662 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLK 258 (294)
Q Consensus 189 Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLk 258 (294)
.+.......++.+...|++.+.=..+...-+..+...+..+.+|+.+++....+.|+++..-++=++-|-
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP 390 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566778888888888888888888899999999999999999999999999999987766655544
No 20
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.22 E-value=83 Score=31.24 Aligned_cols=85 Identities=25% Similarity=0.231 Sum_probs=56.2
Q ss_pred cHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH---H
Q 022662 187 GQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVS---S 263 (294)
Q Consensus 187 ~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVs---s 263 (294)
=+|||..-..||+.+...+.++|-=+.|.+-.+.+--+............ |.|+.+...+|.+++.... +
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~e~~l~~~el~~~~ee~~~~~s 358 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-------EAELRLYYQELYHYREELSRQKS 358 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35999999999999999999999888887765555444444444333222 8888888888877776443 2
Q ss_pred HHHHHHHHhhhhHhH
Q 022662 264 LISVRETLLSSEKQF 278 (294)
Q Consensus 264 li~vrETllSsekqf 278 (294)
..+.|-+-..+|+|+
T Consensus 359 ~~~~k~~~ke~E~q~ 373 (511)
T PF09787_consen 359 PLQLKLKEKESEIQK 373 (511)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333443334444443
No 21
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=56.77 E-value=2.4e+02 Score=29.06 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=42.6
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 022662 191 IRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISV 267 (294)
Q Consensus 191 i~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~v 267 (294)
+.....+++.+..++++++...-....-+.+....++.+-.+....++....-..++..++.+...+++-+.++-..
T Consensus 422 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666665666666666666666655544444444444555555555555555444444433
No 22
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=52.69 E-value=6 Score=40.19 Aligned_cols=24 Identities=38% Similarity=0.902 Sum_probs=20.1
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 022662 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (294)
Q Consensus 84 AvP~LAhtScG--------Ik~legVG~vDk~ 107 (294)
.+=+.+||||| |-..+|+|.||++
T Consensus 271 S~~~~P~TsCGCFE~i~~~iPe~~G~~iV~R~ 302 (463)
T PRK04456 271 SFFEYPHTSCGCFEAVAFYIPEVDGIGIVHRE 302 (463)
T ss_pred EeccCCCcccchhhhheeeeecCceeEEEecC
Confidence 34467899999 7889999999986
No 23
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=51.00 E-value=62 Score=28.48 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=59.0
Q ss_pred hhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHH-------HH-H
Q 022662 195 ANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS-------LI-S 266 (294)
Q Consensus 195 ~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVss-------li-~ 266 (294)
..-|+.+..|+++.|+..+|.++.-+.=.+.|.|...-+...=..|+.+=.-+.-+-+..+.|-.|.+- +. +
T Consensus 4 ~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP~~~e~~~l~~~ 83 (174)
T PF07426_consen 4 MSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDPNFIEEIQLPDS 83 (174)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCchhhhhcccchH
Confidence 345778899999999999997765332233455555444444444444444444555667778776652 12 3
Q ss_pred H-HHHHhhhhHhHHHHHHHhhcc
Q 022662 267 V-RETLLSSEKQFQTIERLFERP 288 (294)
Q Consensus 267 v-rETllSsekqfqtiE~lfeRL 288 (294)
+ .+-||++|..++..=++|+++
T Consensus 84 ~K~~~ILa~e~~i~~~~~~Leki 106 (174)
T PF07426_consen 84 AKLQIILAEEDEIKSTAELLEKI 106 (174)
T ss_pred HHHHHHHHccHHHHHHHHHHHHH
Confidence 3 367888888877776666654
No 24
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.80 E-value=1.9e+02 Score=25.80 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q 022662 253 DFESLKNYVSSLISVRETLLSSEKQFQTIE 282 (294)
Q Consensus 253 dfesLksyVssli~vrETllSsekqfqtiE 282 (294)
+...|++|++.+. +-+.+.|-+||++-
T Consensus 160 ei~~lks~~~~l~---~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 160 EISRLKSEAEALK---EEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 4556677777654 55667788999873
No 25
>PRK09039 hypothetical protein; Validated
Probab=47.60 E-value=2.6e+02 Score=26.71 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=55.6
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 022662 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 188 ~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssl 264 (294)
+++|..-..|++.....-++.|..--|...-.+++..|+..+-.+-..++..-+|.--++.+++++.+.||.-..+|
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555433555556788888888888888889999999999999999999999875544
No 26
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=46.11 E-value=8.7 Score=39.03 Aligned_cols=24 Identities=38% Similarity=0.895 Sum_probs=20.0
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 022662 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (294)
Q Consensus 84 AvP~LAhtScG--------Ik~legVG~vDk~ 107 (294)
.+=..+||||| |-..+|+|.||++
T Consensus 268 s~~~~P~TsCGCfE~i~~~iPe~~G~~iv~R~ 299 (458)
T TIGR00316 268 SAFEYPHTSCGCFEAIVFYIPEVDGIGIVHRG 299 (458)
T ss_pred EeccCCCcccchHhhheeeeecCceeEEEecC
Confidence 34457799999 7889999999987
No 27
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=45.35 E-value=12 Score=31.19 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCCccccccccccccccccccCCCC
Q 022662 34 VDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGT 109 (294)
Q Consensus 34 VdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~LAhtScGIk~legVG~vDk~G~ 109 (294)
+++|..||..- ..-||+|--+=|||.||---.---+|+.+-.---=|+.|...-|+|.+|.
T Consensus 39 m~~l~kRL~~~---------------~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~ 99 (123)
T cd03571 39 MSMLWKRLNDK---------------GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGK 99 (123)
T ss_pred HHHHHHHHHhc---------------cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCC
Confidence 45667777653 45699999999999999766655566665555556888888889999886
No 28
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.61 E-value=1.7e+02 Score=26.83 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=46.6
Q ss_pred hhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHH
Q 022662 202 SLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESL 257 (294)
Q Consensus 202 s~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesL 257 (294)
..++...||..=+-|..+-+|.+++++|=.|..+-|=.-.++--+|..+++.--.|
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888889999999999999999999998888888888887644433
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.52 E-value=3.2e+02 Score=32.71 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 022662 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISV 267 (294)
Q Consensus 188 ~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~v 267 (294)
+.+.++|..++..|..++++-..-.-.=-..+.++..++.||-++..-.|...++-|...+-+.++.+.|+.=+.-...-
T Consensus 1068 ~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~ 1147 (1930)
T KOG0161|consen 1068 DNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGT 1147 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHhhh-hHhHHHHHHH
Q 022662 268 RETLLSS-EKQFQTIERL 284 (294)
Q Consensus 268 rETllSs-ekqfqtiE~l 284 (294)
-...+.. -+++..+.+|
T Consensus 1148 t~~q~e~~~k~e~e~~~l 1165 (1930)
T KOG0161|consen 1148 TAAQLELNKKREAEVQKL 1165 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
No 30
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.10 E-value=3.6e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 022662 216 NGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLK 258 (294)
Q Consensus 216 n~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLk 258 (294)
|-++.+.|..++.++.+-.. +..+.+++...++.+..++
T Consensus 571 ~~~~~~a~~~~~~~i~~lk~----~~~~~~~~~~~~~~~~~~~ 609 (771)
T TIGR01069 571 QEALKALKKEVESIIRELKE----KKIHKAKEIKSIEDLVKLK 609 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHH
Confidence 55666666666666655532 2244555555555554443
No 31
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.00 E-value=1.5e+02 Score=22.70 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=48.8
Q ss_pred HHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 022662 190 EIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRD 253 (294)
Q Consensus 190 ei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~d 253 (294)
.|.-|-.||..+-..-|-+.+=-+--|.++.-+|+.+.++-......+.+.++-+.++...+.-
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777765555555555567788999999999999998888888888888888776653
No 32
>KOG0798 consensus Uncharacterized conserved protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.59 E-value=10 Score=37.73 Aligned_cols=24 Identities=46% Similarity=0.823 Sum_probs=19.7
Q ss_pred cCCccccccccccccccccccCCCCC
Q 022662 85 VPDLAHTSCGIRQLEGVGLVDKNGTP 110 (294)
Q Consensus 85 vP~LAhtScGIk~legVG~vDk~G~p 110 (294)
+|. ..+|-|++|+|+|++||.|.+
T Consensus 289 lP~--gm~~~~~~L~gl~l~~k~~~~ 312 (380)
T KOG0798|consen 289 LPY--GMPCDIKQLEGLGLLDKGPFS 312 (380)
T ss_pred CCC--CCCcChhhcccccccccCCcc
Confidence 454 346999999999999998765
No 33
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.41 E-value=3.8e+02 Score=27.14 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhhhhHhHHHHHHHhh
Q 022662 226 VEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS-LISVRETLLSSEKQFQTIERLFE 286 (294)
Q Consensus 226 vedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVss-li~vrETllSsekqfqtiE~lfe 286 (294)
+.++..+..-..+...+|-++...+|..|..||.-+.+ --+.-.++-.-|+++..||.-|.
T Consensus 117 i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 117 IKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH
Confidence 33333333334444555555666666666666543322 22223333333555555555544
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.98 E-value=5e+02 Score=28.15 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=67.7
Q ss_pred hhhccCCCcccchhhHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhh
Q 022662 134 ISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVL--------------VKRVIMAESETAVEKEKVTLGQEEIRKKANQIE 199 (294)
Q Consensus 134 ~~~~~g~~~~~d~~Yv~e~LksV~mVtdvMEsL--------------vKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE 199 (294)
+...+..++.+|.. |..+=+.++-+-|=+..| .|-+-.-.|.+.-=|.|+--..=++.||...|+
T Consensus 226 t~alq~~ie~Kd~k-i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~ 304 (775)
T PF10174_consen 226 TEALQTVIEEKDTK-IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELE 304 (775)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777766 555544444444434444 344444555566667777777778999999999
Q ss_pred hhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022662 200 NMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAA 241 (294)
Q Consensus 200 ~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAa 241 (294)
.+..+|+..+. -.++||++++-|=+...+-.++++
T Consensus 305 ~~qt~l~~~~~-------~~~d~r~hi~~lkesl~~ke~~~~ 339 (775)
T PF10174_consen 305 ALQTRLETLEE-------QDSDMRQHIEVLKESLRAKEQEAE 339 (775)
T ss_pred HHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 458999999988887777666654
No 35
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.73 E-value=2.2e+02 Score=26.81 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=27.2
Q ss_pred hhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHH
Q 022662 183 KVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETS 234 (294)
Q Consensus 183 Kv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTs 234 (294)
|..-|...|..-..||+.|..+|.+++ -.|.++.+.+++++.+..
T Consensus 2 rl~~GL~KL~et~~~V~~m~~~L~~~~-------~~L~~k~~e~e~ll~~i~ 46 (344)
T PF12777_consen 2 RLENGLDKLKETEEQVEEMQEELEEKQ-------PELEEKQKEAEELLEEIE 46 (344)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777663 345555555555555543
No 36
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=40.73 E-value=2e+02 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=13.1
Q ss_pred HHHhhhhhchhhhHHHHHHHHHHHHHH
Q 022662 206 EEMERFALGTNGILNEMRQRVEDLVEE 232 (294)
Q Consensus 206 EeMErfA~GTn~iLneMrqrvedlv~e 232 (294)
+||-+.|--|+...+++.+.+.++...
T Consensus 82 ~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 344445555555555555554444443
No 37
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.62 E-value=1.3e+02 Score=23.33 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhhhhhhh------cChHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 022662 32 FQVDVLQEKLMEVKTCIK------DSEEDAKKELEVLWRRVKTTATLLTYLKSKA 80 (294)
Q Consensus 32 sQVdvLq~rl~evKa~~~------gSeeda~KELevL~rRVKT~atLLtYLKSKA 80 (294)
..++.|+-||..+|+.++ .|-++=..+|+-|=.|+.+-..+|.-+|+++
T Consensus 28 ~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 28 TATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888765 4788889999999999999999999888763
No 38
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.44 E-value=1.3e+02 Score=28.84 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 022662 22 IWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKAR 81 (294)
Q Consensus 22 ~Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKAR 81 (294)
.|+.||+..+.-++..+.++-+++..+ .+.+.-|..|-..-..+..-+.|++||-+
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i----~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERI----TEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555 23444455454444455666778888754
No 39
>PRK11637 AmiB activator; Provisional
Probab=40.29 E-value=3.4e+02 Score=25.99 Aligned_cols=101 Identities=9% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 022662 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISV 267 (294)
Q Consensus 188 ~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~v 267 (294)
+.+|..+..+|.+...++.+++.=--..+.=|+...+.+.++-.+-....++-+..+.++...+.+.+.++..+..++..
T Consensus 53 ~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH--------HhhhhHhHHHHHHHhhcc
Q 022662 268 RET--------LLSSEKQFQTIERLFERP 288 (294)
Q Consensus 268 rET--------llSsekqfqtiE~lfeRL 288 (294)
.=. +|.+-..|..+.++...+
T Consensus 133 ~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l 161 (428)
T PRK11637 133 AFRQGEHTGLQLILSGEESQRGERILAYF 161 (428)
T ss_pred HHHcCCCcHHHHHhcCCChhHHHHHHHHH
No 40
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.22 E-value=3.2e+02 Score=26.06 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=20.2
Q ss_pred HHHHHhhhhhhhh-hhhhHHHHhhhhhc
Q 022662 188 QEEIRKKANQIEN-MSLKLEEMERFALG 214 (294)
Q Consensus 188 ~Eei~rK~~QiE~-ms~klEeMErfA~G 214 (294)
-|.+++|+.+||| |-.||--.=+++-+
T Consensus 7 we~LRkqArslE~~ld~kL~syskl~as 34 (231)
T KOG3208|consen 7 WEALRKQARSLENQLDSKLVSYSKLGAS 34 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999997 66676666666665
No 41
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=39.76 E-value=47 Score=24.16 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 022662 214 GTNGILNEMRQRVEDLVEETSRQRQ 238 (294)
Q Consensus 214 GTn~iLneMrqrvedlv~eTsRQRq 238 (294)
-+|.+|.|||+-+.+-+.||+--|.
T Consensus 12 ~l~~~l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 12 ELNQMLQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999986654
No 42
>PF03945 Endotoxin_N: delta endotoxin, N-terminal domain; InterPro: IPR005639 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain (IPR005638 from INTERPRO) that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved N-terminal domain.; GO: 0009405 pathogenesis; PDB: 3EB7_A 1I5P_A 2C9K_A 1CIY_A 1JI6_A 1DLC_A 1W99_A.
Probab=39.23 E-value=2.4e+02 Score=23.94 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh----------hhhHhHHHHHHHhh
Q 022662 217 GILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLL----------SSEKQFQTIERLFE 286 (294)
Q Consensus 217 ~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETll----------SsekqfqtiE~lfe 286 (294)
.+-++++..|++|+.+.- .+.....++..|+.|++.+....+..+... .-..+|.+++..|.
T Consensus 41 ~~~~~~~~~ve~lI~~~I--------~~~~~~~~~~~l~gl~~~~~~y~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~f~ 112 (226)
T PF03945_consen 41 DIWEEIIKQVENLIDQKI--------TEYDINILNAELNGLQNLLQDYNDALENWKNNPNNPNLKEEVRTQFNNLESKFR 112 (226)
T ss_dssp HHHHHHHHHHHHHHTHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 378888889999988544 334455667777777777766666555422 22456777776665
Q ss_pred c
Q 022662 287 R 287 (294)
Q Consensus 287 R 287 (294)
.
T Consensus 113 ~ 113 (226)
T PF03945_consen 113 N 113 (226)
T ss_dssp H
T ss_pred H
Confidence 4
No 43
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=39.12 E-value=11 Score=37.86 Aligned_cols=24 Identities=33% Similarity=0.807 Sum_probs=15.0
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 022662 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (294)
Q Consensus 84 AvP~LAhtScG--------Ik~legVG~vDk~ 107 (294)
.+=..+||||| |-..+|||.||++
T Consensus 269 Sime~P~TsCGCfE~I~~~~Pe~nG~~iv~R~ 300 (411)
T PF03598_consen 269 SIMEDPMTSCGCFEAIAFYIPEVNGIGIVNRE 300 (411)
T ss_dssp -SSSS-----S--SEEEEEECCCTEEEEEETT
T ss_pred EeccCCCccchhHhhhhhhcccCceEEEEecC
Confidence 34456789999 6789999999997
No 44
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.08 E-value=2.2e+02 Score=28.79 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-hHhHHHHHHH
Q 022662 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSS-EKQFQTIERL 284 (294)
Q Consensus 219 LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETllSs-ekqfqtiE~l 284 (294)
+..+++.+.+|+.=-..+|++-.+-......+|+.+-.-+.-.+..+.--|.-|+. |.+|...+.|
T Consensus 117 i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 117 IKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888777777777877777776666666666655555 7777777665
No 45
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.57 E-value=55 Score=30.29 Aligned_cols=42 Identities=31% Similarity=0.394 Sum_probs=30.3
Q ss_pred hchhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH
Q 022662 213 LGTNGILN-------EMRQRVEDLVEETSRQRQRAAENEQELCRVKRDF 254 (294)
Q Consensus 213 ~GTn~iLn-------eMrqrvedlv~eTsRQRqRAaENE~ELsrVk~df 254 (294)
-+.++||. -.|+|+.+|.+|..+|.+....-..|+..+|.|=
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566663 4577888888888888777777777777777773
No 46
>PRK10244 anti-RssB factor; Provisional
Probab=37.53 E-value=1e+02 Score=25.44 Aligned_cols=69 Identities=29% Similarity=0.441 Sum_probs=52.0
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 022662 188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISV 267 (294)
Q Consensus 188 ~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~v 267 (294)
++|-+.-+.|+|-.+.=+-.|=| .+|-|+ .++|-..|+.-+.-.++- +-.-.+.|++-|.+||.-|+.+
T Consensus 16 e~esKeL~AQVEAlellitAlL~-~~~~~~-~~~li~~Ie~Ai~~a~~~---------~~~~~~~D~eLL~~~v~~LL~~ 84 (88)
T PRK10244 16 EEESKELTAQVEALELLVTAMLR-TMGKNG-QQELIEQVEGAINAVSKP---------DDSVPDSDTELLLTYVNKLLRH 84 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HhChhh-HHHHHHHHHHHHHHhccc---------cccccchHHHHHHHHHHHHHhh
Confidence 35667788999999998888855 468888 788999998877654321 1123478999999999998765
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.93 E-value=3.4e+02 Score=25.03 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=16.2
Q ss_pred HHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHH
Q 022662 190 EIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLV 230 (294)
Q Consensus 190 ei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv 230 (294)
+|+.|+.+++-+-..|-.=..+.=++.-.|.|.++-.+.|.
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~ 45 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELL 45 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333222222233333444443333333
No 48
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.90 E-value=79 Score=31.18 Aligned_cols=88 Identities=25% Similarity=0.296 Sum_probs=55.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhh--ccCC----cccccccc-
Q 022662 23 WKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIM--AVPD----LAHTSCGI- 95 (294)
Q Consensus 23 Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKARiM--AvP~----LAhtScGI- 95 (294)
-|.|+||.|.....|| -|.-|.-.--|+..+||+.|+.|-=---.-|+|||+----. .-|- +-++-|=|
T Consensus 145 rk~ElEr~rkRle~Lq----siRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~ 220 (338)
T KOG3647|consen 145 RKAELERTRKRLEALQ----SIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIP 220 (338)
T ss_pred HHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhH
Confidence 3457777776666655 35666666778889999999988766667799999842111 1111 22333433
Q ss_pred -------ccccccccccCCCC--CCCCC
Q 022662 96 -------RQLEGVGLVDKNGT--PLSGW 114 (294)
Q Consensus 96 -------k~legVG~vDk~G~--pls~W 114 (294)
+.++-.|..|-+|. |+.|-
T Consensus 221 ekl~ee~~~~d~~g~~DD~d~D~~~~D~ 248 (338)
T KOG3647|consen 221 EKLIEEDDDDDDEGDLDDEDLDSEIPDI 248 (338)
T ss_pred HHhhhhhhhccccccccccccCCCCCch
Confidence 34667888888773 44443
No 49
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=36.42 E-value=19 Score=27.12 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.5
Q ss_pred cccccccccCCCCCCC
Q 022662 97 QLEGVGLVDKNGTPLS 112 (294)
Q Consensus 97 ~legVG~vDk~G~pls 112 (294)
+-+|||=||..|+|++
T Consensus 5 ~~~gigpv~~~giPi~ 20 (50)
T smart00459 5 DYPGIVPVDESGIPQA 20 (50)
T ss_pred ccCccccccCCCCccc
Confidence 4589999999999998
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.91 E-value=5.4e+02 Score=27.05 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022662 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVK 251 (294)
Q Consensus 219 LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk 251 (294)
+.++++|+..|.++-.--.++..|+|.++.+.|
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999888887777777777777666554
No 51
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.65 E-value=2.8e+02 Score=23.69 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=30.0
Q ss_pred hhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Q 022662 195 ANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLI 265 (294)
Q Consensus 195 ~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli 265 (294)
+..|+++..||+++....=.|.--++++| ..+++.+.|++++..-|..|=
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~---------------------~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVR---------------------EDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 35688999999988544433222222222 245566777777777776653
No 52
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.51 E-value=5.9e+02 Score=27.02 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhh---hhhhccCCccccccccccccccc
Q 022662 26 EMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSK---ARIMAVPDLAHTSCGIRQLEGVG 102 (294)
Q Consensus 26 eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSK---ARiMAvP~LAhtScGIk~legVG 102 (294)
++....+.++-++..+.+.+. .-.+...+|+.+-.+.+.....+..+.++ +...+-|+=+-..|| +.+++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~e~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg-~~l~~~~ 471 (908)
T COG0419 397 ELAELSAALEEIQEELEELEK----ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG-QELPEEH 471 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCcHH
Confidence 333333444444444444443 55677788888888888888888888775 222222333344577 6665433
No 53
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=34.16 E-value=91 Score=26.81 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=27.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhcc
Q 022662 250 VKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERP 288 (294)
Q Consensus 250 Vk~dfesLksyVssli~vrETllSsekqfqtiE~lfeRL 288 (294)
.|.|.+.-..-|.+ --|-+.-+||.|+|+|+-||-|
T Consensus 83 mkkdleaankrve~---q~ekiflmekkfe~lekkyesl 118 (122)
T PF05325_consen 83 MKKDLEAANKRVES---QAEKIFLMEKKFETLEKKYESL 118 (122)
T ss_pred HHHHHHHHHHHHHH---hhhhhhhHHHHHHHHHHHHHHH
Confidence 46676666665554 4588999999999999999876
No 54
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.16 E-value=5.2e+02 Score=26.30 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHH
Q 022662 26 EMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRR 65 (294)
Q Consensus 26 eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rR 65 (294)
+....+.+.+.++.++-+++.-+..+-++-..+.+.|-.+
T Consensus 231 ~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~e 270 (650)
T TIGR03185 231 EIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQ 270 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4555666666666666666665554444444433333333
No 55
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=33.90 E-value=92 Score=27.00 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=41.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhc
Q 022662 22 IWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMA 84 (294)
Q Consensus 22 ~Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMA 84 (294)
.=++.+++.+..++.|++++-++.+-=.-|| +|+++..+=+|++-....| +.|+|+-
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar~~GDlsE--ak~~~~~~e~rI~~L~~~L----~~A~Ii~ 87 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQAIEDVNE--RRRQMARPLRDLRYLAARR----RTAQLMP 87 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHCCChhH--HHHHHHHHHHHHHHHHHHH----ccCEEEC
Confidence 3355778888888888877666665555666 8899999999998766555 4578874
No 56
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=33.24 E-value=49 Score=24.18 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=31.5
Q ss_pred HHHHHHHHHH-HhHHHHHHHHhhhhhhhccCC-ccccccccccccccc
Q 022662 57 KELEVLWRRV-KTTATLLTYLKSKARIMAVPD-LAHTSCGIRQLEGVG 102 (294)
Q Consensus 57 KELevL~rRV-KT~atLLtYLKSKARiMAvP~-LAhtScGIk~legVG 102 (294)
++|..+.... ...--.++|-++-+.|=+.|. +....=++++++|||
T Consensus 9 ~~la~~~~~~~~~~~r~~aY~~Aa~~i~~l~~~i~~~~~~~~~l~gIG 56 (68)
T PF14716_consen 9 EELADLYELQGGDPFRARAYRRAAAAIKALPYPITSGEEDLKKLPGIG 56 (68)
T ss_dssp HHHHHHHHHTSTSHHHHHHHHHHHHHHHHSSS-HHSHHHHHCTSTTTT
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCHhHhhHHHHHhhCCCCC
Confidence 4455555555 555667899999999989888 332211488899998
No 57
>PRK03918 chromosome segregation protein; Provisional
Probab=32.98 E-value=5.5e+02 Score=26.27 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHHHHHh
Q 022662 59 LEVLWRRVKTTATLLTYLK 77 (294)
Q Consensus 59 LevL~rRVKT~atLLtYLK 77 (294)
+..|-.+.....+-+.=|+
T Consensus 407 i~~l~~~~~~~~~~i~eL~ 425 (880)
T PRK03918 407 ISKITARIGELKKEIKELK 425 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444333333333333
No 58
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.00 E-value=5.6e+02 Score=26.07 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=57.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHH
Q 022662 145 DGAYIGELLKSVQMVTDVMEVLVKR--VIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEM 222 (294)
Q Consensus 145 d~~Yv~e~LksV~mVtdvMEsLvKR--vi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneM 222 (294)
+..-+..||.+|+.+-+-|-+--.+ ..|--|..=+++- -+.+++|..+++.|..+.+.|++=..-.+.-+.++
T Consensus 398 t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl-----~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l 472 (507)
T PF05600_consen 398 TAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRL-----VESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQEL 472 (507)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555554444332222 1233444433321 25677888888888888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022662 223 RQRVEDLVEETSRQRQRAAENEQELCRV 250 (294)
Q Consensus 223 rqrvedlv~eTsRQRqRAaENE~ELsrV 250 (294)
+-+++.++..|- +=..+-|.+||+.
T Consensus 473 ~pkL~~l~~~Tr---~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 473 EPKLDALVERTR---ELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 777777776663 2333556666643
No 59
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=31.61 E-value=47 Score=31.13 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCCcc---cccccccc
Q 022662 21 EIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLA---HTSCGIRQ 97 (294)
Q Consensus 21 ~~Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKARiMAvP~LA---htScGIk~ 97 (294)
..|..-|-.-.+.++.+..+|-.+..-.+.-.+-+ =+++.-+|||+.++|+.=|+-|--=...+++. |-.+|||=
T Consensus 16 ~~~~~~~~~Y~~al~e~~~k~~~~~~~~~~~~~~~--pie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI 93 (231)
T COG2357 16 LDWSEFLVPYEQALEELKTKLKILRDEYEKLHDYN--PIEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRI 93 (231)
T ss_pred cchHhHhHHHHHHHHHHHHHHHHHHHHHHhhcCCC--chHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeE
Confidence 46888888889999999999999988877655553 57899999999999999888885433333333 44566664
Q ss_pred c
Q 022662 98 L 98 (294)
Q Consensus 98 l 98 (294)
.
T Consensus 94 ~ 94 (231)
T COG2357 94 I 94 (231)
T ss_pred e
Confidence 3
No 60
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.60 E-value=1.1e+02 Score=28.25 Aligned_cols=29 Identities=45% Similarity=0.514 Sum_probs=16.0
Q ss_pred HHHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 022662 236 QRQRAAENEQELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 236 QRqRAaENE~ELsrVk~dfesLksyVssl 264 (294)
=|+|.+|-|+||.+.++.-.+|++=|.+|
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 61
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=30.98 E-value=3.7e+02 Score=23.70 Aligned_cols=91 Identities=18% Similarity=0.324 Sum_probs=52.9
Q ss_pred hhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 022662 196 NQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAE------NEQELCRVKRDFESLKNYVSSLISVRE 269 (294)
Q Consensus 196 ~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaE------NE~ELsrVk~dfesLksyVssli~vrE 269 (294)
..++.+...+.++...+--...+|++.++.+++--.|-...|.+--. ..+--+..+.+...++.|+..-. +
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~---~ 98 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQAS---E 98 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHH---H
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHH---h
Confidence 44666666777777777777777888888887777666666665311 11222345566666665554433 2
Q ss_pred HHhhhhHhHHHHHHHhhccc
Q 022662 270 TLLSSEKQFQTIERLFERPS 289 (294)
Q Consensus 270 TllSsekqfqtiE~lfeRLv 289 (294)
+=-..-+.|..++..++.|.
T Consensus 99 sD~~~~~~~~~~~~~l~~L~ 118 (296)
T PF13949_consen 99 SDSQLRSKLESIEENLELLS 118 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHc
Confidence 22233445666666665553
No 62
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=30.22 E-value=3.3e+02 Score=22.88 Aligned_cols=78 Identities=28% Similarity=0.506 Sum_probs=44.8
Q ss_pred hhhccHHHHHhhhhhhhh----hhhhHHHHhhhhhchhhhHHHHHHHHHH----------HHHHHHHHHHHH--------
Q 022662 183 KVTLGQEEIRKKANQIEN----MSLKLEEMERFALGTNGILNEMRQRVED----------LVEETSRQRQRA-------- 240 (294)
Q Consensus 183 Kv~~~~Eei~rK~~QiE~----ms~klEeMErfA~GTn~iLneMrqrved----------lv~eTsRQRqRA-------- 240 (294)
|+++=+.++...+..+.. -..|+.++-++.-|.-.++++.=.+||. +|.-...||++.
T Consensus 10 kiRVldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I 89 (120)
T PF14931_consen 10 KIRVLDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALI 89 (120)
T ss_pred CeeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444432 3456666666666666666666555553 344445455443
Q ss_pred HHhHHHHHHHHhhHHHHHHH
Q 022662 241 AENEQELCRVKRDFESLKNY 260 (294)
Q Consensus 241 aENE~ELsrVk~dfesLksy 260 (294)
+|---||.|.+-+++||...
T Consensus 90 ~Ek~~eLERl~~E~~sL~kv 109 (120)
T PF14931_consen 90 AEKKMELERLRSEYESLQKV 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666888888888887654
No 63
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=29.26 E-value=60 Score=27.41 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHh--hhhhhhhhhhhhccHHHHHhhhhhhhhhhhh-------HHHHhhhhhch
Q 022662 147 AYIGELLKSVQMVTDVMEVLV--KRVIMA--ESETAVEKEKVTLGQEEIRKKANQIENMSLK-------LEEMERFALGT 215 (294)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLv--KRvi~A--ESEtaveKeKv~~~~Eei~rK~~QiE~ms~k-------lEeMErfA~GT 215 (294)
.||.-..++.--++--||+-+ ||..+. .-|..++.|==.|- +|+.||..=|.....| |.+.+...=+.
T Consensus 4 t~vEq~~~~FlD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK-~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~k~~ 82 (106)
T PF11594_consen 4 TYVEQLIQSFLDVARQMEAFFLQKRFELSAYKPEQVLKEEINELK-EELQRKEQLLQKHYEKIDYWEKLLSDAQNQHKVP 82 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 466777777766666777744 555541 11222222222222 6777776554444444 56666677777
Q ss_pred hhhHHHHHHHHHHH
Q 022662 216 NGILNEMRQRVEDL 229 (294)
Q Consensus 216 n~iLneMrqrvedl 229 (294)
.-|+||||+|+.++
T Consensus 83 ~evp~e~~~~~~e~ 96 (106)
T PF11594_consen 83 DEVPPEARQRLAEL 96 (106)
T ss_pred hhccchHHHHHHhh
Confidence 88999999999876
No 64
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.07 E-value=1.4e+02 Score=26.61 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 022662 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 219 LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssl 264 (294)
|...+.|+.+|...+. --+---+-|++|++|+.+.|+++.-...|
T Consensus 144 l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 144 LEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777776544 23334577899999999999988744433
No 65
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.02 E-value=4e+02 Score=23.47 Aligned_cols=48 Identities=29% Similarity=0.501 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-------ccHHHHHhhhhhhhhhhhhHHHHhh
Q 022662 156 VQMVTDVMEVLVKRVIMAESETAVEKEKVT-------LGQEEIRKKANQIENMSLKLEEMER 210 (294)
Q Consensus 156 V~mVtdvMEsLvKRvi~AESEtaveKeKv~-------~~~Eei~rK~~QiE~ms~klEeMEr 210 (294)
.+.|-||+.+||- +--|.-||+- |.-++...+..+++.+..++++++.
T Consensus 29 ~~~VKdvlq~LvD-------DglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~ 83 (188)
T PF03962_consen 29 SMSVKDVLQSLVD-------DGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEK 83 (188)
T ss_pred hhhHHHHHHHHhc-------cccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888774 4566667763 5556666666666666666666543
No 66
>PF15556 Zwint: ZW10 interactor
Probab=28.82 E-value=4.5e+02 Score=25.22 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=40.9
Q ss_pred HHHHhhhhhhhhh----hhhHH-HHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH
Q 022662 189 EEIRKKANQIENM----SLKLE-EMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVS 262 (294)
Q Consensus 189 Eei~rK~~QiE~m----s~klE-eMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVs 262 (294)
||-.||..|++.- ..|-. -||++-..-+----.-..++..|-+=...-|+|-...-|||.++.++.+.||--+.
T Consensus 94 eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~ 172 (252)
T PF15556_consen 94 EEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAG 172 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665443 22222 45665543332211111233344443444466666677899999999999987553
No 67
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=28.80 E-value=2.6e+02 Score=26.08 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Q 022662 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYV 261 (294)
Q Consensus 219 LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyV 261 (294)
|.||||+...+..|..---..++.+++++...+.++..|+.-+
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~ 43 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDV 43 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3566666666665544444344455555555555444444433
No 68
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.67 E-value=1.8e+02 Score=24.83 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=55.3
Q ss_pred hhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 022662 195 ANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLS 273 (294)
Q Consensus 195 ~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETllS 273 (294)
+.|+++.|..|...=| ++-||++.+-.---.|.+-...-..|+.-|+.|.+.++.=|.++-.+=++|-.
T Consensus 49 ~kql~~vs~~l~~tKk----------hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKK----------HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888877644 46789998888888888888888899999999999999888877766666543
No 69
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=28.18 E-value=1.6e+02 Score=27.14 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 022662 247 LCRVKRDFESLKNYVSSLISVRETLLSS 274 (294)
Q Consensus 247 LsrVk~dfesLksyVssli~vrETllSs 274 (294)
-...|...++|-..+++|..|-+..|+.
T Consensus 174 a~~fkeQ~~kLa~NL~sLN~VYg~ML~A 201 (202)
T TIGR03513 174 SSSLKEEMEKMAANLTSLNEVYGGMLTA 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456889999999999999999998874
No 70
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=27.10 E-value=25 Score=37.54 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.3
Q ss_pred cCCccccccc--------cccccccccccCC
Q 022662 85 VPDLAHTSCG--------IRQLEGVGLVDKN 107 (294)
Q Consensus 85 vP~LAhtScG--------Ik~legVG~vDk~ 107 (294)
+=..+||||| |-..+|+|.||++
T Consensus 570 ~~~~P~TsCGCfE~i~~~~Pe~nG~~iv~R~ 600 (711)
T PRK09529 570 IMEDPMTSCGCFEAIAAILPECNGFMVVNRE 600 (711)
T ss_pred eccCCCcccchHHhHhhhcccCceEEEEecC
Confidence 3456789999 7789999999997
No 71
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.07 E-value=3.3e+02 Score=24.60 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 022662 9 LSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSK 79 (294)
Q Consensus 9 ~s~l~S~~~~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSK 79 (294)
+..++.++.+.+..|.+.-...|..++.+...+.+++.- -...++||+.+-..+.+..+-+..++..
T Consensus 102 l~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~----n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 102 VKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE----NQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666667665444444343333333332222 2234555666666655555555555543
No 72
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=26.91 E-value=1.5e+02 Score=27.49 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHH
Q 022662 220 NEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFES 256 (294)
Q Consensus 220 neMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfes 256 (294)
+||++||.+|-.|-.+-|.+-.+-.+||..+++-|..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999888888888777777788777766543
No 73
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.75 E-value=8.8e+02 Score=26.66 Aligned_cols=179 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhhhhhhhccCC-ccccccccccccccccccCCCCCCCCCCcCCCCCCCCCCCcchhhhhhhccCCCccc
Q 022662 66 VKTTATLLTYLKSKARIMAVPD-LAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQ 144 (294)
Q Consensus 66 VKT~atLLtYLKSKARiMAvP~-LAhtScGIk~legVG~vDk~G~pls~Wsk~~d~ss~~~~d~~~~~~~~~~~g~~~~~ 144 (294)
+.++-.+..+++-+.||+.++. +.+.+ +.-..|+....
T Consensus 622 l~~A~~l~~~~~~~~riVTl~G~~~~~~-----------------------------------------G~~tGG~~~~~ 660 (1163)
T COG1196 622 LEQARRLARKLRIKYRIVTLDGDLVEPS-----------------------------------------GSITGGSRNKR 660 (1163)
T ss_pred HHHHHHHHHhcCCCceEEecCCcEEeCC-----------------------------------------eeeecCCcccc
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHH
Q 022662 145 DGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQ 224 (294)
Q Consensus 145 d~~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrq 224 (294)
-+ +..-. -......-+..+-.++-.++.+...-+.++.--...+.....+++.+..++++..+=.-.--.-+++...
T Consensus 661 ~~--~~~~~-~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1163)
T COG1196 661 SS--LAQKR-ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737 (1163)
T ss_pred ch--hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-------HHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH----HHHHHhhhhHhHHHHHHHhhcc
Q 022662 225 RVEDLVEETSR-------QRQRAAENEQELCRVKRDFESLKNYVSSLIS----VRETLLSSEKQFQTIERLFERP 288 (294)
Q Consensus 225 rvedlv~eTsR-------QRqRAaENE~ELsrVk~dfesLksyVssli~----vrETllSsekqfqtiE~lfeRL 288 (294)
++..+..+... -.++-++.++++.........|+.+...+-. ..+.+...+.++...+..+..+
T Consensus 738 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1163)
T COG1196 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 74
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat [, ]. Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain []; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 []; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) []; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin []; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) []. The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined [, ].; PDB: 2H7T_A 2DSR_G 1RMJ_A 1ICF_I 1L3H_A 1ZT3_A 2DSQ_H 1ZT5_A.
Probab=26.24 E-value=49 Score=24.24 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.4
Q ss_pred ccCCCCCCCCCCcC
Q 022662 104 VDKNGTPLSGWSRN 117 (294)
Q Consensus 104 vDk~G~pls~Wsk~ 117 (294)
||++|.|+++..+.
T Consensus 49 Vd~~G~~i~gt~~~ 62 (68)
T PF00086_consen 49 VDPEGKEIPGTRTR 62 (68)
T ss_dssp BSTTS-B-TS-TCB
T ss_pred ECCCCCCcCCCccC
Confidence 99999999998654
No 75
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=26.11 E-value=1.3e+02 Score=22.56 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=33.5
Q ss_pred HHHhhHHHHHHHHHHH------HHHHHHHhhhhHhHHHHHHHhhccccCC
Q 022662 249 RVKRDFESLKNYVSSL------ISVRETLLSSEKQFQTIERLFERPSADP 292 (294)
Q Consensus 249 rVk~dfesLksyVssl------i~vrETllSsekqfqtiE~lfeRLva~~ 292 (294)
|||+.|-.+-|.++-= -.+|+.|.....+.++|-.+.+.|...+
T Consensus 5 RVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~~~ 54 (76)
T PF07568_consen 5 RVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQSE 54 (76)
T ss_pred hHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7888888776665421 2468899999999999999998886553
No 76
>PLN02372 violaxanthin de-epoxidase
Probab=25.59 E-value=2.3e+02 Score=29.30 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCCcccchhhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhh
Q 022662 139 GSSDEQDGAYIGE-------LLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERF 211 (294)
Q Consensus 139 g~~~~~d~~Yv~e-------~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErf 211 (294)
....++....+.+ +-+-|.-|-.--++|++|+.++|.=.++++.-+.+.++=-+....+++.+.+.+.|.|+.
T Consensus 368 ~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~ 447 (455)
T PLN02372 368 KDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVEKL 447 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 334455556667789999999999999999999988876666677888888888888875
No 77
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.40 E-value=5.6e+02 Score=23.93 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHH
Q 022662 147 AYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRV 226 (294)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrv 226 (294)
-||--..-=...|-|-+=.++++.+..++- +++ +++...-.-|.++-+..-||+
T Consensus 100 ~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-----~~~---~~~~~~lk~~~~~~~~~~~~~------------------ 153 (216)
T KOG1962|consen 100 LYISGFVLFLSLVIRRLHTLLRELATLRAN-----EKA---MKENEALKKQLENSSKLEEEN------------------ 153 (216)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHH---HHHHHHHHHhhhcccchhhhH------------------
Confidence 387777777778888888899988887764 111 223333334445433322222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhcccc
Q 022662 227 EDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERPSA 290 (294)
Q Consensus 227 edlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETllSsekqfqtiE~lfeRLva 290 (294)
+.+..++-..+.+.++..++..+..+=.++| .||++.+-+-|+||..
T Consensus 154 --------------~~~~~~~~kL~~el~~~~~~Le~~~~~~~al---~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 154 --------------DKLKADLEKLETELEKKQKKLEKAQKKVDAL---KKQSEGLQDEYDRLLE 200 (216)
T ss_pred --------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHH
Confidence 2233445555566666666666666666555 4777777777777754
No 78
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.84 E-value=6.6e+02 Score=26.79 Aligned_cols=45 Identities=11% Similarity=0.333 Sum_probs=26.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHhhHHHHH
Q 022662 214 GTNGILNEMRQRVEDLVEETSRQRQR--AAENEQELCRVKRDFESLK 258 (294)
Q Consensus 214 GTn~iLneMrqrvedlv~eTsRQRqR--AaENE~ELsrVk~dfesLk 258 (294)
-.|.+|.+.|..++.++.+-..++.. .....+++...++.+..++
T Consensus 574 ~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~ 620 (782)
T PRK00409 574 EAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKAN 620 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 34677777777777777777543211 1134556666666665544
No 79
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=24.43 E-value=3.1e+02 Score=20.59 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=31.1
Q ss_pred hhhhhhhhhHHHHhhhh--hchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022662 196 NQIENMSLKLEEMERFA--LGTNGILNEMRQRVEDLVEETSRQRQRAAEN 243 (294)
Q Consensus 196 ~QiE~ms~klEeMErfA--~GTn~iLneMrqrvedlv~eTsRQRqRAaEN 243 (294)
.+|-.+...+..++++. +||..=-.++|.+|.++..+|..-.....+.
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~ 52 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISEL 52 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666777664 8999888899999988888777555544443
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.06 E-value=6.5e+02 Score=24.21 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=34.8
Q ss_pred HHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 022662 27 MERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKA 80 (294)
Q Consensus 27 me~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKA 80 (294)
+...+.+++.++..+..++......-++-+++++.|.+..+...+-+.-|+.+.
T Consensus 190 i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 190 IDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555566777888888888888877777776654
No 81
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.54 E-value=3.9e+02 Score=22.62 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHH
Q 022662 22 IWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLL 73 (294)
Q Consensus 22 ~Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLL 73 (294)
.+...+.....+||.++.+|-++|..+..++... ...+-|.|||....-=|
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHHH
Confidence 3455677788999999999999999999886543 45557777776554433
No 82
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.23 E-value=32 Score=29.07 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=33.7
Q ss_pred HHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 022662 38 QEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSK 79 (294)
Q Consensus 38 q~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSK 79 (294)
..|++.++.+++.+.+++.+|++...-+++.. ++.||++|
T Consensus 77 ~~rylkv~i~L~~~~~~~~~~l~~~~p~IRd~--ii~~Ls~k 116 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEATRERLKDYLPEVRSR--LLLLLSRK 116 (162)
T ss_pred CceEEEEEEEEEECCHHHHHHHHHhCHHHHHH--HHHHHhcC
Confidence 36788889999999999999999887788776 88888876
No 83
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.89 E-value=4.1e+02 Score=21.40 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhccc
Q 022662 223 RQRVEDLVEETSRQRQRAAENEQELCRV--KRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERPS 289 (294)
Q Consensus 223 rqrvedlv~eTsRQRqRAaENE~ELsrV--k~dfesLksyVssli~vrETllSsekqfqtiE~lfeRLv 289 (294)
|.+++.+-+.-.++..|-..-|+++.-+ +.|+..|+-- +..+|-.+--.+.+++.|.++-+.|.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~---l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLE---LAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666777777776 7777777654 44567777777888888888776664
No 84
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.88 E-value=2.3e+02 Score=31.95 Aligned_cols=48 Identities=31% Similarity=0.453 Sum_probs=40.1
Q ss_pred hhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH
Q 022662 215 TNGILNE-MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVS 262 (294)
Q Consensus 215 Tn~iLne-Mrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVs 262 (294)
-|+=||| +|||++.+-.|-+|||..-...-..++.-.+=+-||||.-.
T Consensus 981 e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~ 1029 (1480)
T COG3096 981 ENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYD 1029 (1480)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4666776 89999999999999999888888888888888888886543
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.69 E-value=6.8e+02 Score=23.93 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022662 216 NGILNEMRQRVEDLVEETSRQRQRAAE 242 (294)
Q Consensus 216 n~iLneMrqrvedlv~eTsRQRqRAaE 242 (294)
|+++.+++.+...|..|-..-|+...|
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444555555555555555444444444
No 86
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.60 E-value=8.5e+02 Score=25.02 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022662 220 NEMRQRVEDLVEETSRQRQRAAENEQELCRVKR 252 (294)
Q Consensus 220 neMrqrvedlv~eTsRQRqRAaENE~ELsrVk~ 252 (294)
++.+..+..+-.+.+..+...+..++++....+
T Consensus 792 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 824 (1179)
T TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRE 824 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433444333333333333333333
No 87
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.99 E-value=7.2e+02 Score=23.97 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 022662 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSL 264 (294)
Q Consensus 219 LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssl 264 (294)
+.|+++|+.++ |.|-++-|.+-+|+..-+.+++|=|.-+
T Consensus 223 ~~e~~~~i~e~-------~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 223 VKEIKERITEM-------KGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666433 5566777778888888888888887654
No 88
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.90 E-value=1.2e+03 Score=27.36 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=80.3
Q ss_pred CcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhH
Q 022662 141 SDEQDGAYIGELLKSVQMVTD-VMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGIL 219 (294)
Q Consensus 141 ~~~~d~~Yv~e~LksV~mVtd-vMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iL 219 (294)
..+...+ +...++....+.. -.+++.++--=-|.+.+--+|+.--..-.|.+-..|||.-+.+..|+|..--+-+...
T Consensus 364 ~~~k~e~-~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i 442 (1293)
T KOG0996|consen 364 EVEKNEA-VKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEI 442 (1293)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHH
Confidence 3333344 5566666665544 8889999988899999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022662 220 NEMRQRVEDLVEETSRQRQRAAE 242 (294)
Q Consensus 220 neMrqrvedlv~eTsRQRqRAaE 242 (294)
+++.-.+++|-..--+-+..+.+
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e 465 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDE 465 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987655444444433
No 89
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=21.88 E-value=1.4e+02 Score=23.66 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=32.2
Q ss_pred cccccCCCCCCCCCCcCCCCCC--CCCCCcchhhhhhhccCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 022662 101 VGLVDKNGTPLSGWSRNVDLSS--FNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVL 166 (294)
Q Consensus 101 VG~vDk~G~pls~Wsk~~d~ss--~~~~d~~~~~~~~~~~g~~~~~d~~Yv~e~LksV~mVtdvMEsL 166 (294)
-+|+|..|.|=-.|-|++=.++ +++-+..+.+|+...-...+.. +. ...+-+-|..|+.+++..
T Consensus 53 r~Fl~~~Glp~r~~~kHvifap~~~~~y~~~~fPgI~dai~~~~~~-~~-~~~~~~~i~~v~~~i~~A 118 (125)
T PF04253_consen 53 RAFLDPRGLPGRPWYKHVIFAPGRWNGYASWTFPGIRDAIEDKDSS-KD-WEEAQKQISRVAKAIQNA 118 (125)
T ss_dssp HCTB-TTSBTTBTT--BSSEEEETTEEEEEEESHHHHHHHTTGGGT-ST-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCCCcccceeeeCCCCCCCCcCcccHHHHHHHHhcccC-ch-HHHHHHHHHHHHHHHHHH
Confidence 3589999999999999985522 1122234555555422221100 11 445555666666665543
No 90
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=21.67 E-value=3.5e+02 Score=20.22 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 022662 229 LVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLS 273 (294)
Q Consensus 229 lv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETllS 273 (294)
=+++.++|+....|+. |+.+|+-+-+.|+.-++--|+.+|
T Consensus 10 ~feqkskeqa~ste~~-----vk~af~~~E~~l~~~L~~s~~~is 49 (52)
T PF04837_consen 10 DFEQKSKEQAESTEQM-----VKNAFEQHEKSLSAALKESEQKIS 49 (52)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHhh
Confidence 3578888888777764 699999999988776666555554
No 91
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=21.43 E-value=1.8e+02 Score=20.63 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=28.5
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHH
Q 022662 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRV 226 (294)
Q Consensus 189 Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrv 226 (294)
+++.....||.+...||.++..-.-..|.+|+-|..|+
T Consensus 29 ~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 29 EDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 45666777888888888888777777788888887663
No 92
>PLN02320 seryl-tRNA synthetase
Probab=21.31 E-value=5.6e+02 Score=26.44 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHhhhhhHHHHHHHHHhhhhhhhc-----ChHHHHHHHHHHHHHHHhHHHHHHHHhhhh--hhhccCCcccccccc
Q 022662 27 MERSQFQVDVLQEKLMEVKTCIKD-----SEEDAKKELEVLWRRVKTTATLLTYLKSKA--RIMAVPDLAHTSCGI 95 (294)
Q Consensus 27 me~~qsQVdvLq~rl~evKa~~~g-----Seeda~KELevL~rRVKT~atLLtYLKSKA--RiMAvP~LAhtScGI 95 (294)
..+.+.++|.|+.+..++-..|.. ..+..+.|...|-..++....-+.=+..+- -.+.||-+.|.++=+
T Consensus 102 ~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~ 177 (502)
T PLN02320 102 MLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPV 177 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 445678888888888776555432 122344456666666666666555554433 467899999999853
No 93
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.91 E-value=21 Score=31.08 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=15.7
Q ss_pred hhhhhhHHH-HhhhhhchhhhHH
Q 022662 199 ENMSLKLEE-MERFALGTNGILN 220 (294)
Q Consensus 199 E~ms~klEe-MErfA~GTn~iLn 220 (294)
|.+...+-+ .|=+|+|||++-.
T Consensus 18 ~~lr~~~~~~~eI~AlGTNa~AT 40 (131)
T PF12953_consen 18 EKLRKELPEEVEIIALGTNAIAT 40 (131)
T ss_pred HHHHHhCCCCcEEEEEehhHHHH
Confidence 444445555 8899999999853
No 94
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.75 E-value=3.6e+02 Score=27.02 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=34.0
Q ss_pred hhhhhhhHH----HHhhhhhchhhhHHHH---HHHHHHHHHHHHHHHHHHH
Q 022662 198 IENMSLKLE----EMERFALGTNGILNEM---RQRVEDLVEETSRQRQRAA 241 (294)
Q Consensus 198 iE~ms~klE----eMErfA~GTn~iLneM---rqrvedlv~eTsRQRqRAa 241 (294)
.|.+...++ +.|-+|+|-|+++-+. ||-+...++||.+|-+.-.
T Consensus 53 aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLr 103 (389)
T KOG4687|consen 53 AETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLR 103 (389)
T ss_pred HHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhh
Confidence 344444444 5667899999999998 9999999999999877643
No 95
>PF13864 Enkurin: Calmodulin-binding
Probab=20.58 E-value=3.5e+02 Score=21.14 Aligned_cols=40 Identities=30% Similarity=0.562 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHhhHHHH
Q 022662 218 ILNEMRQRVEDLVEE---------TSRQRQRAAENEQELCRVKRDFESL 257 (294)
Q Consensus 218 iLneMrqrvedlv~e---------TsRQRqRAaENE~ELsrVk~dfesL 257 (294)
+|+.++++-.++..| |-+.|.|.++-|.+|.-+-.|..-|
T Consensus 45 lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 45 LLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666544 6789999999999999999887655
No 96
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.55 E-value=9.3e+02 Score=24.68 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=12.5
Q ss_pred HHHHhhhhHhHHHHHHHhhccc
Q 022662 268 RETLLSSEKQFQTIERLFERPS 289 (294)
Q Consensus 268 rETllSsekqfqtiE~lfeRLv 289 (294)
.-.+..-+++.+..+.+|+-|.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666666553
No 97
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.33 E-value=52 Score=26.16 Aligned_cols=47 Identities=34% Similarity=0.459 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHHHHhhhhhhhccCCccccccccccccccccccCCCC
Q 022662 63 WRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGT 109 (294)
Q Consensus 63 ~rRVKT~atLLtYLKSKARiMAvP~LAhtScGIk~legVG~vDk~G~ 109 (294)
||.+--+=+||.||-....--+++++-+-.--|+.+...-++|.+|.
T Consensus 56 wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 56 WRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred hhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 66666678999999999988888888766667888876666666543
No 98
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.22 E-value=7.3e+02 Score=23.30 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHhhHHHHHHHHH
Q 022662 191 IRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENE--------QELCRVKRDFESLKNYVS 262 (294)
Q Consensus 191 i~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE--------~ELsrVk~dfesLksyVs 262 (294)
|..-..|+.....++.++-..--.-|-.+..++.+++.+-.....+-.+...+- ..+......++.++.-+.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHhhccccC
Q 022662 263 SLISVRETLLSSEKQFQTIERLFERPSAD 291 (294)
Q Consensus 263 sli~vrETllSsekqfqtiE~lfeRLva~ 291 (294)
.+....=.+..-++++++-+.+|+.|..+
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll~r 364 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAMQR 364 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 99
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.12 E-value=41 Score=28.82 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=33.6
Q ss_pred HHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 022662 39 EKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKA 80 (294)
Q Consensus 39 ~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLKSKA 80 (294)
.|++.++..++.+.+++.++++...-+++.. ++.||.++.
T Consensus 86 ~ryLkv~i~L~~~~~~~~~~~~~~~p~Ird~--i~~~Ls~~~ 125 (166)
T PRK12785 86 VQYLKLKVVLEVKDEKVVEQIKPLMPRVTDA--FQTYLRELR 125 (166)
T ss_pred ceEEEEEEEEEECCHHHHHHHHHhchHHHHH--HHHHHHhCC
Confidence 3788888899888888999999988888874 899998764
No 100
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=20.01 E-value=2.7e+02 Score=19.03 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhhhhcChH--HHHHHHHHHHHHHHhHHHHHHHHh
Q 022662 32 FQVDVLQEKLMEVKTCIKDSEE--DAKKELEVLWRRVKTTATLLTYLK 77 (294)
Q Consensus 32 sQVdvLq~rl~evKa~~~gSee--da~KELevL~rRVKT~atLLtYLK 77 (294)
.||..|-+++..++.-+....- .++..|..+..+.+. |+.|||
T Consensus 2 vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~r---Ll~ylk 46 (46)
T cd00677 2 VQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLR---LLKYLK 46 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH---HHHHhC
Confidence 4788888888888887774333 356667766665543 788875
Done!