Query 022662
Match_columns 294
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 09:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x79_B RAB GTPase binding effe 91.4 0.65 2.2E-05 37.8 7.4 61 17-77 2-65 (112)
2 3trt_A Vimentin; cytoskeleton, 75.7 14 0.0005 26.3 7.5 16 216-231 8-23 (77)
3 2rm8_A Sensory rhodopsin II tr 70.9 0.9 3.1E-05 31.2 0.1 37 219-262 25-61 (68)
4 3oja_B Anopheles plasmodium-re 60.1 1E+02 0.0035 28.1 14.6 45 218-262 510-554 (597)
5 2w6b_A RHO guanine nucleotide 55.2 14 0.00049 27.2 4.0 35 31-66 16-50 (56)
6 3ghg_A Fibrinogen alpha chain; 52.7 52 0.0018 33.1 8.7 36 249-284 114-150 (562)
7 4dnd_A Syntaxin-10, SYN10; str 51.3 54 0.0018 26.4 7.3 60 147-210 67-126 (130)
8 1ses_A Seryl-tRNA synthetase; 48.5 1.6E+02 0.0055 27.3 10.9 66 29-94 39-110 (421)
9 2xdj_A Uncharacterized protein 47.7 65 0.0022 24.5 6.8 52 201-252 4-55 (83)
10 3i00_A HIP-I, huntingtin-inter 47.5 63 0.0022 26.0 7.1 66 194-259 13-82 (120)
11 1go4_E MAD1 (mitotic arrest de 44.0 23 0.00079 28.2 3.9 48 211-259 7-56 (100)
12 3s9g_A Protein hexim1; cyclin 42.3 58 0.002 26.5 6.1 37 222-258 42-85 (104)
13 3oja_B Anopheles plasmodium-re 40.7 2.1E+02 0.0072 26.0 11.5 26 232-257 510-535 (597)
14 2c5k_T Syntaxin TLG1, T-snare 40.3 34 0.0012 26.3 4.3 53 147-209 36-88 (95)
15 2ic6_A Nucleocapsid protein; h 38.7 26 0.0009 27.1 3.4 32 18-49 38-69 (78)
16 4fla_A Regulation of nuclear P 37.8 1.7E+02 0.0059 24.1 9.1 71 187-264 66-147 (152)
17 2k48_A Nucleoprotein; viral pr 37.3 27 0.00092 28.5 3.4 32 18-49 68-99 (107)
18 3qne_A Seryl-tRNA synthetase, 35.8 1.6E+02 0.0054 28.5 9.0 75 18-96 37-119 (485)
19 2dfs_A Myosin-5A; myosin-V, in 35.4 54 0.0018 34.2 6.1 65 218-282 929-997 (1080)
20 3viq_A SWI5-dependent recombin 35.1 76 0.0026 25.6 5.7 57 24-80 6-63 (122)
21 1oao_C CODH, carbon monoxide d 34.2 12 0.0004 38.6 1.0 24 84-107 586-617 (729)
22 2ic9_A Nucleocapsid protein; h 30.5 41 0.0014 26.9 3.4 32 18-49 38-69 (96)
23 3vkg_A Dynein heavy chain, cyt 30.3 4.9E+02 0.017 30.9 13.1 48 175-222 1913-1964(3245)
24 1x79_B RAB GTPase binding effe 30.2 2.2E+02 0.0074 23.0 10.0 64 193-266 17-80 (112)
25 2do5_A Splicing factor 3B subu 30.0 34 0.0012 25.3 2.6 26 36-68 15-40 (58)
26 1i84_S Smooth muscle myosin he 27.7 2.1E+02 0.0073 29.6 8.9 68 189-263 857-931 (1184)
27 2bbh_A Divalent cation transpo 27.6 1.8E+02 0.0062 23.9 7.0 57 217-275 186-242 (269)
28 4fi5_A Nucleoprotein; structur 27.5 49 0.0017 27.2 3.4 32 18-49 55-86 (113)
29 2dq0_A Seryl-tRNA synthetase; 26.6 3E+02 0.01 25.9 9.0 76 16-95 33-116 (455)
30 1hjb_A Ccaat/enhancer binding 26.0 1.4E+02 0.0046 23.0 5.5 31 221-251 40-70 (87)
31 2dq3_A Seryl-tRNA synthetase; 25.2 2.2E+02 0.0074 26.4 7.7 89 18-116 34-130 (425)
32 1wle_A Seryl-tRNA synthetase; 24.7 3.1E+02 0.011 26.4 8.9 40 55-94 121-162 (501)
33 2dfs_A Myosin-5A; myosin-V, in 24.6 6.2E+02 0.021 26.4 12.3 32 221-252 988-1019(1080)
34 1ci6_A Transcription factor AT 24.5 1.9E+02 0.0065 20.4 6.2 36 226-261 25-60 (63)
35 3mxz_A Tubulin-specific chaper 24.2 2.7E+02 0.0093 22.2 10.9 99 152-282 6-115 (116)
36 3lss_A Seryl-tRNA synthetase; 23.6 2.9E+02 0.01 26.6 8.5 37 59-95 113-151 (484)
37 2vh2_A FTSQ, cell division pro 22.9 83 0.0028 26.6 4.1 47 79-126 67-133 (255)
38 1xgw_A Epsin 4; ENTH, enthopro 22.9 28 0.00094 29.6 1.2 48 62-109 86-133 (176)
39 2w83_C C-JUN-amino-terminal ki 22.6 91 0.0031 24.2 3.9 28 223-250 50-77 (77)
40 3oja_A Leucine-rich immune mol 22.2 2.1E+02 0.0072 25.6 6.9 90 189-288 353-461 (487)
41 2vh1_A FTSQ, cell division pro 21.2 53 0.0018 26.6 2.5 48 79-127 40-108 (220)
42 4emc_A Monopolin complex subun 20.7 4.3E+02 0.015 23.2 8.4 61 226-290 22-83 (190)
43 1mz9_A Cartilage oligomeric ma 20.6 1.1E+02 0.0038 20.6 3.7 26 213-238 12-37 (45)
44 2v71_A Nuclear distribution pr 20.2 2.7E+02 0.0093 24.1 6.9 60 18-77 10-69 (189)
No 1
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.41 E-value=0.65 Score=37.79 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=53.7
Q ss_pred hhhhHHHHH---HHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022662 17 IETHEIWKQ---EMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLK 77 (294)
Q Consensus 17 ~~~~~~Wk~---eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLK 77 (294)
.++|+-|++ +.++.+.|+..+.+-.-+.-.++..+.+|.++++.+|..++.+...+|.=|+
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998 6777778999999999999999999999999999999999999999996443
No 2
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=75.74 E-value=14 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 022662 216 NGILNEMRQRVEDLVE 231 (294)
Q Consensus 216 n~iLneMrqrvedlv~ 231 (294)
+.||+|||..-|+++.
T Consensus 8 ~~il~eiRaQYE~ia~ 23 (77)
T 3trt_A 8 TAAMRDVRQQYESVAA 23 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888887777764
No 3
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore, membrane, methylation, photoreceptor protein, receptor; NMR {Natronomonas pharaonis}
Probab=70.92 E-value=0.9 Score=31.18 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH
Q 022662 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVS 262 (294)
Q Consensus 219 LneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVs 262 (294)
+|.|+.++.+++.+....+ +++..-++++|++.+||+
T Consensus 25 ~n~M~~~L~~~i~~i~~~~-------~~~e~~~~~~e~~~~~~~ 61 (68)
T 2rm8_A 25 FDEMRQSVRTSLEDAKNAR-------EDAEQAQKRAEEINTELL 61 (68)
T ss_dssp TTTHHHHTTSSHHHHHHHH-------HHHHHHHHGGGCTTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4556666666666554443 334445888999888886
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.13 E-value=1e+02 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH
Q 022662 218 ILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVS 262 (294)
Q Consensus 218 iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVs 262 (294)
....++++.+++..+..++++...+..+++-.++++.+.|+....
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 344556666777777777777776666666655555555555444
No 5
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=55.16 E-value=14 Score=27.25 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHH
Q 022662 31 QFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRV 66 (294)
Q Consensus 31 qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRV 66 (294)
.-||..|+..+--.|-+++ .|--|+|+||.+.||+
T Consensus 16 kDqV~eL~qe~k~m~k~lE-eEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLE-EEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4466667666666666664 5778999999999998
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.67 E-value=52 Score=33.08 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhh-hHhHHHHHHH
Q 022662 249 RVKRDFESLKNYVSSLISVRETLLSS-EKQFQTIERL 284 (294)
Q Consensus 249 rVk~dfesLksyVssli~vrETllSs-ekqfqtiE~l 284 (294)
-++|-...||-=|.+-|+-.=-|.+. +.|-..|-||
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555333333333 5555566554
No 7
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=51.34 E-value=54 Score=26.42 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhh
Q 022662 147 AYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMER 210 (294)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMEr 210 (294)
....+|..+++-+..=++-|.+=|.++|+. -.|..|+..||.+...-|.+...++.+|+.
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~n----p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEAN----PGKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----HHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999988889999999998855 457889999999999999998888888864
No 8
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.46 E-value=1.6e+02 Score=27.28 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred hhhhhHHHHHHHHHhhhhhhh-cChHHH---HHHHHHHHHHHHhHHHHHHHHhhh--hhhhccCCccccccc
Q 022662 29 RSQFQVDVLQEKLMEVKTCIK-DSEEDA---KKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDLAHTSCG 94 (294)
Q Consensus 29 ~~qsQVdvLq~rl~evKa~~~-gSeeda---~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~LAhtScG 94 (294)
..+.+++.|+++-.++-..|. .+.+++ +.+...|-.++|....-+.=+..+ ...+.||.+.|.|+-
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp 110 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 456778888888877766665 333332 455566666666666655555444 367899999999975
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.69 E-value=65 Score=24.48 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=42.7
Q ss_pred hhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022662 201 MSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKR 252 (294)
Q Consensus 201 ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~ 252 (294)
+..++...|+..-+.|..+-+|.+++++|=.|..+-|=.-.++.-+|..+++
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3457777888666788899999999999999988888888888888877776
No 10
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.46 E-value=63 Score=26.03 Aligned_cols=66 Identities=12% Similarity=0.306 Sum_probs=45.2
Q ss_pred hhhhhhhhhhhHH----HHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH
Q 022662 194 KANQIENMSLKLE----EMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKN 259 (294)
Q Consensus 194 K~~QiE~ms~klE----eMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLks 259 (294)
+..+|+.+...++ ++|+|-.=-..+.-.|+-||-.|--|-.-||+-..++=.|.++++.+-+.|+.
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655554 56777666777888888888888877777776655555566677777766643
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.96 E-value=23 Score=28.22 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=39.3
Q ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHhhHHHHHH
Q 022662 211 FALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCR--VKRDFESLKN 259 (294)
Q Consensus 211 fA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsr--Vk~dfesLks 259 (294)
|++ ||-=++..|++|+.|-.|-.|-|++-++-|-+|-+ ++-||.-.++
T Consensus 7 ~~~-~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~T 56 (100)
T 1go4_E 7 FLF-SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRT 56 (100)
T ss_dssp --C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTE
T ss_pred CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccC
Confidence 344 88889999999999999999999999999999977 6678865443
No 12
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=42.34 E-value=58 Score=26.48 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHhhHHHHH
Q 022662 222 MRQRVEDLVEETSRQRQ-------RAAENEQELCRVKRDFESLK 258 (294)
Q Consensus 222 Mrqrvedlv~eTsRQRq-------RAaENE~ELsrVk~dfesLk 258 (294)
+-.+++.+.+||.|+|+ |..|-|.|+.|++++=.-|+
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34577788889999988 55666777777776655443
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.72 E-value=2.1e+02 Score=26.00 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHH
Q 022662 232 ETSRQRQRAAENEQELCRVKRDFESL 257 (294)
Q Consensus 232 eTsRQRqRAaENE~ELsrVk~dfesL 257 (294)
+-...+++.+..|.++-+.+++.+-+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 33444567777777777777666333
No 14
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=40.26 E-value=34 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.327 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHh
Q 022662 147 AYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEME 209 (294)
Q Consensus 147 ~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeME 209 (294)
.+..++...++-+.+-++-|-+=|.|+|+. +.+||.+....+.+...+++.|.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~l~~~i~~lk 88 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKNIKQQLDALK 88 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998877 77778777777777777776663
No 15
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=38.73 E-value=26 Score=27.06 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~ 49 (294)
+++++=|+-+.++++-|+.|+.||-++|-.|-
T Consensus 38 DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 38 DPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999997653
No 16
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=37.75 E-value=1.7e+02 Score=24.13 Aligned_cols=71 Identities=28% Similarity=0.450 Sum_probs=41.3
Q ss_pred cHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhH-HHH--HHHHHHHHHHHHH-H-------HHHHHHhHHHHHHHHhhHH
Q 022662 187 GQEEIRKKANQIENMSLKLEEMERFALGTNGIL-NEM--RQRVEDLVEETSR-Q-------RQRAAENEQELCRVKRDFE 255 (294)
Q Consensus 187 ~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iL-neM--rqrvedlv~eTsR-Q-------RqRAaENE~ELsrVk~dfe 255 (294)
+.++-.+-+.+|+....+|++- |+-| .|| |..+..|+++... | +.++.++-.-+.||+.---
T Consensus 66 Dk~~~e~l~~~veeA~~~L~eY-------n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkk 138 (152)
T 4fla_A 66 DKEAAERLSKTVDEACLLLAEY-------NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRK 138 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777788888888776 4444 344 5667788877665 2 2333344444444544444
Q ss_pred HHHHHHHHH
Q 022662 256 SLKNYVSSL 264 (294)
Q Consensus 256 sLksyVssl 264 (294)
-|++++++|
T Consensus 139 eL~~hi~sL 147 (152)
T 4fla_A 139 ELKSHIQSL 147 (152)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhhcC
Confidence 455555443
No 17
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.34 E-value=27 Score=28.53 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~ 49 (294)
+++++=|+-+.++++-|+.||+||-++|-.|-
T Consensus 68 DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 68 DPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999997664
No 18
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.80 E-value=1.6e+02 Score=28.50 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhh-----hc-ChHHHHHHHHHHHHHHHhHHHHHHHHhhh--hhhhccCCcc
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCI-----KD-SEEDAKKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDLA 89 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~-----~g-Seeda~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~LA 89 (294)
+-++.|++ .+.+++.|+++...+-..| .+ .-+..+.|...|-.++|....-+.=+..+ ..++.||-+.
T Consensus 37 ~ld~~~r~----~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 37 AEYKEWVK----LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34445544 3445555555554443322 11 12345677788888888877777766655 4789999999
Q ss_pred ccccccc
Q 022662 90 HTSCGIR 96 (294)
Q Consensus 90 htScGIk 96 (294)
|.|+=+-
T Consensus 113 ~~~vP~g 119 (485)
T 3qne_A 113 HESVVDS 119 (485)
T ss_dssp CTTSCCC
T ss_pred CccCCCC
Confidence 9997543
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.39 E-value=54 Score=34.23 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q 022662 218 ILNEMRQRVEDLVEETSRQRQRA----AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIE 282 (294)
Q Consensus 218 iLneMrqrvedlv~eTsRQRqRA----aENE~ELsrVk~dfesLksyVssli~vrETllSsekqfqtiE 282 (294)
-|.||++|+++..++...-+++. ..-++|.+.++.|.+.|+.--....+....+.+-+.+.+..+
T Consensus 929 kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 929 KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666555544333322 223455555555555555444444333333333333333333
No 20
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=35.12 E-value=76 Score=25.63 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=40.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHH-HHHhhhh
Q 022662 24 KQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLL-TYLKSKA 80 (294)
Q Consensus 24 k~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLL-tYLKSKA 80 (294)
.++....+.||..|+++|--+|.++..-...--.+|+.|...-++++-.. .||-..+
T Consensus 6 ~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~ 63 (122)
T 3viq_A 6 LSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPM 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778899999999998888865322222368999999988887654 4455444
No 21
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=34.21 E-value=12 Score=38.58 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.0
Q ss_pred ccCCccccccc--------cccccccccccCC
Q 022662 84 AVPDLAHTSCG--------IRQLEGVGLVDKN 107 (294)
Q Consensus 84 AvP~LAhtScG--------Ik~legVG~vDk~ 107 (294)
.+=..+||||| |-..+|||.||++
T Consensus 586 Sime~P~TsCGCfE~I~~~~Pe~nG~~iV~R~ 617 (729)
T 1oao_C 586 TLMENPMTSCGCFEAIMAILPECNGIMITTRD 617 (729)
T ss_dssp CSSSSCCCCCSCCSEEEEEEGGGTEEEEEETT
T ss_pred EeccCCCccchhHHHHhhhcccCceEEEEecC
Confidence 34456799999 6789999999997
No 22
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=30.46 E-value=41 Score=26.89 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~ 49 (294)
+++++=|+-+.++++-|+.||.||-++|-.|-
T Consensus 38 DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 38 DPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999997664
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.26 E-value=4.9e+02 Score=30.93 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=36.0
Q ss_pred hhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhh----hhchhhhHHHH
Q 022662 175 SETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERF----ALGTNGILNEM 222 (294)
Q Consensus 175 SEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErf----A~GTn~iLneM 222 (294)
.|....+.+..-|.+.+..-+.|++.|+.+|++++.- .--|+-+|.+|
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999999999999999999999987653 33344444444
No 24
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.16 E-value=2.2e+02 Score=23.00 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=48.7
Q ss_pred hhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Q 022662 193 KKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLIS 266 (294)
Q Consensus 193 rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~ 266 (294)
.-.-|++.+..--.++|.| +.+..||-.-+-+.-+.++..+|+.|.-++..|.-+|+-|..=+.
T Consensus 17 ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~ 80 (112)
T 1x79_B 17 QANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334666666666666666 666777777777788889999999999999999999987765443
No 25
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.01 E-value=34 Score=25.27 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHh
Q 022662 36 VLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKT 68 (294)
Q Consensus 36 vLq~rl~evKa~~~gSeeda~KELevL~rRVKT 68 (294)
.||+||-|+-|-|+||-|. |.+|+|+
T Consensus 15 ELQaKLaE~GAPi~g~REE-------lvdRLk~ 40 (58)
T 2do5_A 15 ELQAKLAEIGAPIQGNREE-------LVERLQS 40 (58)
T ss_dssp HHHHHHHHHTCCCCSCHHH-------HHHHHHH
T ss_pred HHHHHHHHhCCcccccHHH-------HHHHHHH
Confidence 5899999999999999765 5666654
No 26
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.73 E-value=2.1e+02 Score=29.58 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Q 022662 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVE-------ETSRQRQRAAENEQELCRVKRDFESLKNYV 261 (294)
Q Consensus 189 Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~-------eTsRQRqRAaENE~ELsrVk~dfesLksyV 261 (294)
.|+.....+++.+..+++..+. .+.+++.+++.+-. +-...+...++.++++.++..+.+.|..-+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~-------~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l 929 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEA-------ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555543 34444444444433 222233333344444555555544444444
Q ss_pred HH
Q 022662 262 SS 263 (294)
Q Consensus 262 ss 263 (294)
..
T Consensus 930 ~e 931 (1184)
T 1i84_S 930 HE 931 (1184)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 27
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=27.57 E-value=1.8e+02 Score=23.93 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 022662 217 GILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSE 275 (294)
Q Consensus 217 ~iLneMrqrvedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETllSse 275 (294)
-+|..+..+++++-.+--.... .++=.+|.++|++.-.|+.++..+-.+-..|..++
T Consensus 186 ~~l~~i~~~id~lE~~v~~~~~--~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 186 VLLEKIDDEIDVLEEEVLERPE--KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555444322211 23345788899999999999999888888887654
No 28
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=27.52 E-value=49 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK 49 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~ 49 (294)
+++++=|+-+.++++-|+.||.||-++|-.|-
T Consensus 55 DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 55 DPDELNKRTLTDREGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999987653
No 29
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.65 E-value=3e+02 Score=25.90 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=45.2
Q ss_pred hhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh---cC---hHHHHHHHHHHHHHHHhHHHHHHHHhhh--hhhhccCC
Q 022662 16 IIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK---DS---EEDAKKELEVLWRRVKTTATLLTYLKSK--ARIMAVPD 87 (294)
Q Consensus 16 ~~~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~---gS---eeda~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~ 87 (294)
+-+..+.|++ .+.+++.|+++-..+-..|. .+ -+..+.+...|-.++|....-+.=+..+ ...+.||.
T Consensus 33 ~~~l~~~~r~----~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 33 ILKLDTEWRT----KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344555654 34455555555544433322 11 1234667777777777777766666554 46789999
Q ss_pred cccccccc
Q 022662 88 LAHTSCGI 95 (294)
Q Consensus 88 LAhtScGI 95 (294)
+.|-|+-+
T Consensus 109 ~~~~~vP~ 116 (455)
T 2dq0_A 109 ITHPSVPV 116 (455)
T ss_dssp CCCTTSCC
T ss_pred CCCccCCC
Confidence 99999753
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.05 E-value=1.4e+02 Score=22.98 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022662 221 EMRQRVEDLVEETSRQRQRAAENEQELCRVK 251 (294)
Q Consensus 221 eMrqrvedlv~eTsRQRqRAaENE~ELsrVk 251 (294)
+|.+|++.|..|-.+-|.+-.+-+.|+..++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777766666655554444444433
No 31
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.16 E-value=2.2e+02 Score=26.39 Aligned_cols=89 Identities=15% Similarity=0.282 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhh---cChH---HHHHHHHHHHHHHHhHHHHHHHHhhh--hhhhccCCcc
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK---DSEE---DAKKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDLA 89 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~---gSee---da~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~LA 89 (294)
+-.+.||+ .+.+++.|+++-..+-..|. .+.+ ..+.|...|-.++|....-+.=+..+ ...+.||.+.
T Consensus 34 ~~~~~~r~----~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 34 ELDKRRRE----IIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34444543 45566666666655543332 1212 23566677777777766666655543 4678999999
Q ss_pred ccccccccccccccccCCCCCCCCCCc
Q 022662 90 HTSCGIRQLEGVGLVDKNGTPLSGWSR 116 (294)
Q Consensus 90 htScGIk~legVG~vDk~G~pls~Wsk 116 (294)
|.|+- +|--+.+-+.+.-|..
T Consensus 110 ~~~vp------~g~~e~~n~~~~~~g~ 130 (425)
T 2dq3_A 110 HPSVP------VGEDEKDNVEVRRWGE 130 (425)
T ss_dssp CTTSC------CCSSGGGCEEEEEESC
T ss_pred CCCCC------CCCCccCcEEEEEeCC
Confidence 99974 3333334445555543
No 32
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.67 E-value=3.1e+02 Score=26.35 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhh--hhhhccCCccccccc
Q 022662 55 AKKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDLAHTSCG 94 (294)
Q Consensus 55 a~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~LAhtScG 94 (294)
.+.|...|-.++|....-+.=+..+ ...+.||.+.|.|+-
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP 162 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVP 162 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3566677777777776666666554 467899999999974
No 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.56 E-value=6.2e+02 Score=26.44 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022662 221 EMRQRVEDLVEETSRQRQRAAENEQELCRVKR 252 (294)
Q Consensus 221 eMrqrvedlv~eTsRQRqRAaENE~ELsrVk~ 252 (294)
.+...++++-++-.+....-.+-|+...+.+.
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333334445555553
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.51 E-value=1.9e+02 Score=20.43 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Q 022662 226 VEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYV 261 (294)
Q Consensus 226 vedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyV 261 (294)
.++|..+..--.++-.+-+.+++.++.+...||+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555566655555543
No 35
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=24.17 E-value=2.7e+02 Score=22.16 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHH
Q 022662 152 LLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVE 231 (294)
Q Consensus 152 ~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~ 231 (294)
.++.+..=|+|..-|+|-...-+-|...+..|+- .++.. .+=.-.+..-+.+--=|-.||-++++|+..-
T Consensus 6 ~lrqLkIktg~vkRL~KE~~~Y~kE~~~q~~kie----kmk~e----~~dey~iKkq~evL~Et~~mipd~~~RL~~a-- 75 (116)
T 3mxz_A 6 TIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTA----DMKDK----GADPYDLKQQENVLGESRMMIPDCHKRLESA-- 75 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhc----cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Confidence 4566777789999999988888888777776651 11110 0000111111111222334455555555443
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHhhhhHhHHHHH
Q 022662 232 ETSRQRQRAAENEQELCRVKRDFESLKNYVS-----------SLISVRETLLSSEKQFQTIE 282 (294)
Q Consensus 232 eTsRQRqRAaENE~ELsrVk~dfesLksyVs-----------sli~vrETllSsekqfqtiE 282 (294)
+..|+.|+. -+...+++|-+.++-|+|.|
T Consensus 76 ----------------------~~~L~~~l~~~~~~~~~~~ee~~~Ak~~l~~ae~~~~~~~ 115 (116)
T 3mxz_A 76 ----------------------LADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 115 (116)
T ss_dssp ----------------------HHHHHHHHHHHHTC-CCCCHHHHHHHHHHHHHHTC-----
T ss_pred ----------------------HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHhccCCC
Confidence 334444444 46789999999999999876
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.65 E-value=2.9e+02 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHhhh--hhhhccCCcccccccc
Q 022662 59 LEVLWRRVKTTATLLTYLKSK--ARIMAVPDLAHTSCGI 95 (294)
Q Consensus 59 LevL~rRVKT~atLLtYLKSK--ARiMAvP~LAhtScGI 95 (294)
...|-.+++....-+.=+..+ ..++.||.+.|.|+=+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 151 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPI 151 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 445555666665555555444 4688999999999654
No 37
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=22.92 E-value=83 Score=26.56 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.6
Q ss_pred hhhhhccCCcccccccccccc-----------------ccccccCCCCCCCCCCc---CCCCCCCCCC
Q 022662 79 KARIMAVPDLAHTSCGIRQLE-----------------GVGLVDKNGTPLSGWSR---NVDLSSFNGP 126 (294)
Q Consensus 79 KARiMAvP~LAhtScGIk~le-----------------gVG~vDk~G~pls~Wsk---~~d~ss~~~~ 126 (294)
+.++.+.|-..++++-- +.+ +.+|||.+|+.++.=.. ..+++-+.|+
T Consensus 67 ~~~l~~~PwV~~a~V~r-~~P~~L~I~V~Er~PvA~~~~~~~iD~~G~v~~~~~~~~~~~~LP~l~G~ 133 (255)
T 2vh2_A 67 QQQIERLPWIQQASVRK-QWPDELKIHLVEYVPFARWNDLHMVDEQGRSFSVPSERVGKQKLPLLYGP 133 (255)
T ss_dssp HHHTSCCSSEEEEEEEE-ETTTEEEEEEEECCCCBBSSSSCEECTTCCEECCCSSTTCCSCCCEEECS
T ss_pred HHHHHcCCCeeEEEEEE-ECCCeEEEEEEEeeeEEEECCCcEECCCCcEEcccccccccCCCCEEECC
Confidence 46788999998888642 444 56899999998875433 2344444444
No 38
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=22.90 E-value=28 Score=29.63 Aligned_cols=48 Identities=31% Similarity=0.476 Sum_probs=33.6
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhccCCccccccccccccccccccCCCC
Q 022662 62 LWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGT 109 (294)
Q Consensus 62 L~rRVKT~atLLtYLKSKARiMAvP~LAhtScGIk~legVG~vDk~G~ 109 (294)
-||+|--+=+||.||---.-=-.|.++-.--.=|+.|.-.-|+|.+|.
T Consensus 86 ~WR~vyKaL~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~ 133 (176)
T 1xgw_A 86 NWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGK 133 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSC
T ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCC
Confidence 488888889999999765544445554444455788887778887764
No 39
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.57 E-value=91 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022662 223 RQRVEDLVEETSRQRQRAAENEQELCRV 250 (294)
Q Consensus 223 rqrvedlv~eTsRQRqRAaENE~ELsrV 250 (294)
+..++-+-.=-+|.++|-.|-|+||.|+
T Consensus 50 ~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 50 QGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444456666777777777764
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.17 E-value=2.1e+02 Score=25.63 Aligned_cols=90 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHhHHHHHH
Q 022662 189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSR-------------------QRQRAAENEQELCR 249 (294)
Q Consensus 189 Eei~rK~~QiE~ms~klEeMErfA~GTn~iLneMrqrvedlv~eTsR-------------------QRqRAaENE~ELsr 249 (294)
+++.+-...-..+..|..++|..-.---.-..+|++++.+++..... +.+-.++.|.|..+
T Consensus 353 ~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (487)
T 3oja_A 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432 (487)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhcc
Q 022662 250 VKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERP 288 (294)
Q Consensus 250 Vk~dfesLksyVssli~vrETllSsekqfqtiE~lfeRL 288 (294)
.++|++-. ++.+-.-+++++..+++.+-+
T Consensus 433 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMY----------QHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhh----------hhHHHHHHHHhhhhhhhhhhh
No 41
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=21.16 E-value=53 Score=26.59 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=32.2
Q ss_pred hhhhh-ccCCcccccccccccc-----------------ccccccCCCCCCCCCCcC---CCCCCCCCCC
Q 022662 79 KARIM-AVPDLAHTSCGIRQLE-----------------GVGLVDKNGTPLSGWSRN---VDLSSFNGPD 127 (294)
Q Consensus 79 KARiM-AvP~LAhtScGIk~le-----------------gVG~vDk~G~pls~Wsk~---~d~ss~~~~d 127 (294)
+.++. +.|-..++++- |+.+ .-+|||.+|+.++.=... .+++-+.||+
T Consensus 40 ~~~l~~~~P~V~~a~V~-r~~P~~l~I~V~Er~pvA~~~~~~~id~~G~v~~~~~~~~~~~~lP~l~G~~ 108 (220)
T 2vh1_A 40 QTQIEQRLPWIKQVSVR-KQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPE 108 (220)
T ss_dssp HHHHHHHCTTEEEEEEE-EETTTEEEEEEEECCEEEEETTTEEEETTCCEEECCGGGTTTCCCCEEECST
T ss_pred HHHHHhcCCCEEEEEEE-EeCCCceEEEEEEeccEEEECCCcEECCCCeEEecCccccccCCCcEEECCC
Confidence 46788 88988888876 5555 238999999988754432 1455555543
No 42
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.69 E-value=4.3e+02 Score=23.18 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-hhHhHHHHHHHhhcccc
Q 022662 226 VEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLS-SEKQFQTIERLFERPSA 290 (294)
Q Consensus 226 vedlv~eTsRQRqRAaENE~ELsrVk~dfesLksyVssli~vrETllS-sekqfqtiE~lfeRLva 290 (294)
|..|+.|-++-+|.-.--++|++.+++...|||.-+.. -++-++ -+...+-++.||+-|.+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~----~~~~~~~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE----LKTQTSQQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHhhhHHHHHHHHccC
Confidence 66788888888888888889999999999999887632 122222 23345667788887653
No 43
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=20.60 E-value=1.1e+02 Score=20.57 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.7
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHH
Q 022662 213 LGTNGILNEMRQRVEDLVEETSRQRQ 238 (294)
Q Consensus 213 ~GTn~iLneMrqrvedlv~eTsRQRq 238 (294)
..+|+++.++|+-+...|.|++=-|.
T Consensus 12 ~~~~~~~~~~~~~~~qqvkE~~~lr~ 37 (45)
T 1mz9_A 12 QETNAALQDVRELLRQQVKEITFLKN 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHh
Confidence 35899999999999999998876654
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.19 E-value=2.7e+02 Score=24.07 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022662 18 ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLK 77 (294)
Q Consensus 18 ~~~~~Wk~eme~~qsQVdvLq~rl~evKa~~~gSeeda~KELevL~rRVKT~atLLtYLK 77 (294)
+--.-||...++-+.+++.|+..|.|.-.+-+-=|..-.+||+.+=.|.+....-+..|+
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLK 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999998887776666777888888877777766666554
Done!