BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022663
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 23 YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
++G + +L + G ++GA+G+GK+TL++ + G +V G+++
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT- 70
Query: 76 VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
L+ S + + S+TV +PL+ D + + D V+R R
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK---------DEVKR-R 120
Query: 136 LIELLDIDLQWRMH-----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
+ ELL + H +S GQ++RV I L KVLL DE T LD +L
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
+ KD + G TI+ TH D ++ +A I +GEL + ++E+
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 5 MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
+NE +++ + F+Y + P+F DF+L I GS LVG +GSGK+T+L +L
Sbjct: 364 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-- 421
Query: 65 KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDFS-AEHMI 122
+++ + +S T + D+ L W ++ +G+ + P+ S AE++
Sbjct: 422 ---------LRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 470
Query: 123 FGVEGSDPVRRERLIELLDIDLQWRMHK----------------VSDGQRRRVQICMGLL 166
+G + V E + + ++ + +S GQ++R+ I LL
Sbjct: 471 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 530
Query: 167 HPFKVLLLDEITVDLD 182
K+LLLDE T LD
Sbjct: 531 KNPKILLLDEATSALD 546
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 23 YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
++G + +L + G ++GA+G+GK+TL++ + G +V G+++
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT- 93
Query: 76 VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
L+ S + + S+TV +PL+ D + + D V+R R
Sbjct: 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK---------DEVKR-R 143
Query: 136 LIELLDIDLQWRMH-----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
+ ELL + H +S GQ++RV I L KVLL D+ T LD +L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
+ KD + G TI+ TH D ++ +A I +GEL + ++E+
Sbjct: 204 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 45/203 (22%)
Query: 5 MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-- 62
+NE +++ + F+Y + P+F DF+L I GS LVG +GSGK+T+L +L
Sbjct: 333 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392
Query: 63 -----AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDF 116
+G + G D+ Q L W ++ +G+ + P+
Sbjct: 393 LYDPASGTISLDGHDIRQ--------------------LNPVWLRSKIGTVSQEPILFSC 432
Query: 117 S-AEHMIFGVEGSDPVRRERLIELLDIDLQWRMHK----------------VSDGQRRRV 159
S AE++ +G + V E + + ++ + +S GQ++R+
Sbjct: 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492
Query: 160 QICMGLLHPFKVLLLDEITVDLD 182
I LL K+LLLDE T LD
Sbjct: 493 AIARALLKNPKILLLDEATSALD 515
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 23 YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
++G + +L + G ++GA+G+GK+TL++ + G +V G+++
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT- 93
Query: 76 VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
L+ S + + S+TV +PL+ D + + D V+R R
Sbjct: 94 TLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPK---------DEVKR-R 143
Query: 136 LIELLDIDLQWRMH-----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
+ ELL + H +S GQ++RV I L KVLL D+ T LD +L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
+ KD + G TI+ TH D ++ +A I +GEL + ++E+
Sbjct: 204 ELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL--VCS 90
+ NL I G ++G +GSGK+T+L I+ G + + + D +L +
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 91 GDLSYLGGSWSK----TVGSAGEIPLQGDFSAEHMIFGVEG--SDPVRRERLIELLDI-D 143
+ ++ ++ T E+PL IF G S RR+R +E L + +
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPL---------IFKYRGAMSGEERRKRALECLKMAE 133
Query: 144 LQWRM-----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
L+ R +++S GQ++RV I L + ++L D+ T LD ++ K E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
+ G T+V TH + + + + Y++DGE+ R EKL D+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL--VCS 90
+ NL I G ++G +GSGK+T+L I+ G + + + D +L +
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 91 GDLSYLGGSWSK----TVGSAGEIPLQGDFSAEHMIFGVEG--SDPVRRERLIELLDI-D 143
+ ++ ++ T E+PL IF G S RR+R +E L + +
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPL---------IFKYRGAMSGEERRKRALECLKMAE 133
Query: 144 LQWRM-----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
L+ R +++S GQ++RV I L + ++L D+ T LD ++ K E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
+ G T+V TH + + + + Y++DGE+ R EKL D+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 25/222 (11%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL--VCS 90
+ NL I G + G +GSGK+T L I+ G + + + D +L +
Sbjct: 23 NVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 91 GDLSYLGGSWSK----TVGSAGEIPLQGDFSAEHMIFGVEG--SDPVRRERLIELL---D 141
+ ++ ++ T E+PL IF G S RR+R +E L +
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPL---------IFKYRGAXSGEERRKRALECLKXAE 133
Query: 142 IDLQWRMHK---VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
++ ++ HK +S GQ++RV I L + ++L DE T LD + K E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNE 193
Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
+ G T+V TH + + + + Y++DGE+ R EKL D+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 28/251 (11%)
Query: 3 DGMNENEKLN-SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI 61
+G E E++N + V + F+Y+G +KP L + + I G LVG +GSGK+T+ +
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 62 L-------AGKHMVGGRDV--VQVLN-RSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111
+G + G DV ++ N R F + S ++ + + + A E
Sbjct: 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA----LVSQNVHLFNDTIANNIAYAAE-- 442
Query: 112 LQGDFSAEHMIFGVEGSDPVRR-ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK 170
G+++ E + + + E + + LD + +S GQR+RV I LL
Sbjct: 443 --GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500
Query: 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL- 229
VL+LDE T LD + + DE Q+ T++ H +E A + + +GE+
Sbjct: 501 VLILDEATSALDTESERAIQAAL-DEL-QKNKTVLVIAHRLSTIEQ-ADEILVVDEGEII 557
Query: 230 ---RRAEKLAE 237
R A+ LA+
Sbjct: 558 ERGRHADLLAQ 568
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQ 86
+ NL I G L+G +GSGK+TLL +AG K +DV ++ + +
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVG 78
Query: 87 LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--L 144
LV Y + K + PL+ + I D RE + ++L ID L
Sbjct: 79 LVFQNWALYPHMTVYKNIA----FPLELRKAPREEI------DKKVRE-VAKMLHIDKLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
++S GQ++RV I L+ +VLLLDE +LD + R+++ K ++ G T
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 205 VYATHIFDGLETWATHLAYIQDGEL 229
VY TH A +A I++GE+
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEI 212
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
D NL I G + VG +G GK+TLL+++AG + D+ + +DT G +
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERG-V 77
Query: 94 SYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGVEGSDP------VRRERLIELLDID--L 144
+ S++ L S AE+M FG++ + R ++ E+L + L
Sbjct: 78 GMVFQSYA----------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
+ +S GQR+RV I L+ V LLDE +LD R+ + ++ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 205 VYATHIFDGLE--TWATHLAYIQDGELRRAEKLAEL 238
+Y TH D +E T A + + G + + K EL
Sbjct: 188 IYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
D NL I G + VG +G GK+TLL+++AG + D+ + +DT G +
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERG-V 77
Query: 94 SYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGVEGSDP------VRRERLIELLDID--L 144
+ S++ L S AE+M FG++ + R ++ E+L + L
Sbjct: 78 GMVFQSYA----------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
+ +S GQR+RV I L+ V LLDE +LD R+ + ++ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 205 VYATHIFDGLE--TWATHLAYIQDGELRRAEKLAEL 238
+Y TH D +E T A + + G + + K EL
Sbjct: 188 IYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRS 80
K + + I G L+G NG+GKTT L+I+ +G V G++VV+
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE----- 81
Query: 81 SFHDTQLVCSGDLSYL---GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
H+ + + +SYL G++ G + G +++ E + V R I
Sbjct: 82 EPHEVRKL----ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----EIEEMVERATEI 133
Query: 138 ELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC 197
L ++ R+ S G R++ I L+ ++ +LDE T LDV+ ++ K +
Sbjct: 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QA 192
Query: 198 EQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLR 256
Q G TI+ ++H +E +A I +G + + EL E + N+ V E ++
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK-------ILAGKH 66
I V + F+Y P+ NL ++ G LVG++G GK+T++ +L GK
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
+ G DV + N V S + + + + + E + E M+ +
Sbjct: 476 TIDGVDVRDI-NLEFLRKNVAVVSQEPALFNCTIEENISLGKE-----GITREEMVAACK 529
Query: 127 GSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
++ E+ I+ L + + R ++S GQ++R+ I L+ K+LLLDE T LD
Sbjct: 530 MANA---EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 586
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 46/189 (24%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78
++F+Y + + + + PG LVG +G GK+T VV +L
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKST---------------VVALLE 1126
Query: 79 RSSFHDTQLVCSGDLSYLGGSWSKT---------VGSAGEIPLQGDFS-AEHMIFGVEGS 128
R F+DT G++ ++ GS KT + + P D S AE++I+G++ S
Sbjct: 1127 R--FYDT---LGGEI-FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180
Query: 129 DPVRRE---------------RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
+ L E + + R ++S GQ++R+ I L+ K+LL
Sbjct: 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240
Query: 174 LDEITVDLD 182
LDE T LD
Sbjct: 1241 LDEATSALD 1249
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
+ +L I+ G L+ G GSGK+TLL+I+AG DV+ R
Sbjct: 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK------------ 72
Query: 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI----FGVEGSDPVRR-----ERLIELLDIDL 144
G + +G A + P + F AE + F V+ P R ++ +E + +D
Sbjct: 73 ---GYEIRRNIGIAFQYP-EDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF 128
Query: 145 QWRMHKV----SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
+V S G++RRV I ++H +L+LDE V LD + DLL ++ +
Sbjct: 129 DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV-EKWKTL 187
Query: 201 GATIVYATHIFDGLETWATHL 221
G T++ +H +ET H+
Sbjct: 188 GKTVILISH---DIETVINHV 205
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 34/191 (17%)
Query: 45 CLLVGAN-GSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT 103
CLLV N GSGK+TLL+I+AG DV+ R G +
Sbjct: 37 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---------------GYEIRRN 81
Query: 104 VGSAGEIPLQGDFSAEHMI----FGVEGSDPVRR-----ERLIELLDIDLQWRMHKV--- 151
+G A + P + F AE + F V+ P R ++ +E + +D +V
Sbjct: 82 IGIAFQYP-EDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF 140
Query: 152 -SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210
S G++RRV I ++H +L+LDE V LD + DLL ++ + G T++ +H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV-EKWKTLGKTVILISH- 198
Query: 211 FDGLETWATHL 221
+ET H+
Sbjct: 199 --DIETVINHV 207
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
D NL I G + VG +G GK+TLL+++AG + D+ + +DT G +
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERG-V 77
Query: 94 SYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGVEGSDP------VRRERLIELLDID--L 144
+ S++ L S AE+M FG++ + R ++ E+L + L
Sbjct: 78 GMVFQSYA----------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
+ +S GQR+RV I L+ V LLD+ +LD R+ + ++ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 205 VYATHIFDGLE--TWATHLAYIQDGELRRAEKLAEL 238
+Y TH D +E T A + + G + + K EL
Sbjct: 188 IYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 16/225 (7%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
+K + F+Y + + + PG LVG NGSGK+T+ +L GK
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSA-GEIPLQGDFSAEHMIFG 124
++ G +VQ + + TQ+ G L G S+ + + P + +A M G
Sbjct: 77 LLDGEPLVQYDHH--YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
D + + D ++ +++S GQR+ V + L+ ++L+LD+ T LD
Sbjct: 135 AH--DFI--SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAG 190
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
++ + + E T++ TH L A H+ ++++G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITHQLS-LAERAHHILFLKEGSV 234
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%)
Query: 3 DGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL 62
D + E I+ + FSY+ K P+ D I PG + LVG GSGKTT++ +L
Sbjct: 344 DAVELREVRGEIEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 63 A-------GKHMVGGRDVVQVLNRSS--------FHDTQLVCSG---DLSYLG-GSWSKT 103
G+ +V G D+ ++ RSS DT L + +L Y G+ +
Sbjct: 402 MRFYDVDRGQILVDGIDIRKI-KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE 460
Query: 104 VGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICM 163
+ A ++ D +H+ EG + V L +S GQR+ + I
Sbjct: 461 IKEAAKLT-HSDHFIKHL---PEGYETV------------LTDNGEDLSQGQRQLLAITR 504
Query: 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223
L K+L+LDE T ++D + E G T + H + ++ A +
Sbjct: 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNTIKN-ADLIIV 561
Query: 224 IQDGELRRAEKLAELDELR 242
++DGE+ K EL + R
Sbjct: 562 LRDGEIVEMGKHDELIQKR 580
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 23/182 (12%)
Query: 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL------AGKH 66
+I+ + FSY N I G+ C LVG GSGK+T+ K+L G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA--EHMIFG 124
+GG++V + NR+S + D + + L G A E +I
Sbjct: 77 KIGGKNVNK-YNRNSIRSIIGIVPQDTILFNETIKYNI-------LYGKLDATDEEVI-- 126
Query: 125 VEGSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
+ + + IE L D + + K+S G+R+R+ I LL K+++ DE T
Sbjct: 127 -KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 181 LD 182
LD
Sbjct: 186 LD 187
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
+KV M+F Y G KP + D N S SR ++G NG+GK+TL+ +L G+
Sbjct: 672 VKVTNMEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
I++ + F Y G+ + D N G ++VG NGSGKTTLLKILAG G
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAG--- 65
Query: 74 VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
++ S D L+ S+ +G+ E + FS E I G++ S+ +R
Sbjct: 66 -EIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVA--FSLE--IMGLDESEMRKR 120
Query: 134 -ERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
++++EL+ + +S GQ++R+ I L + L LDE LD ++ ++
Sbjct: 121 IKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF 180
Query: 191 DFFKDECEQRGATIVYATHIFDGLE 215
+ + G I+ TH + L+
Sbjct: 181 QVL-ESLKNEGKGIILVTHELEYLD 204
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 42 GSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS 101
G L+G +G GKTT L +LAG + ++ + D LV Y
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI--------YFDDVLVNDIPPKY------ 74
Query: 102 KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR---------RERLIE-----LLDIDLQWR 147
+ VG Q HM + P+R +R++E L+D L +
Sbjct: 75 REVGMV----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
++S GQ++RV + L+ KVLL DE +LD RM + K ++ G T VY
Sbjct: 131 PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV 190
Query: 208 THIFDGLETWATHLAYIQDGEL 229
TH T A+ +A G+L
Sbjct: 191 THDQAEAMTMASRIAVFNQGKL 212
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 47/213 (22%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG +GSGK+TL K++ G+ ++ G
Sbjct: 7 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 124
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 125 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 163
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
DE T LD + ++ C+ R I+ A
Sbjct: 164 DEATSALDYESEHVIMRNMHKICKGRTVIIIAA 196
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 47/213 (22%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG +GSGK+TL K++ G+ ++ G
Sbjct: 13 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 130
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 131 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 169
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
DE T LD + ++ C+ R I+ A
Sbjct: 170 DEATSALDYESEHVIMRNMHKICKGRTVIIIAA 202
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG +GSGK+TL K++ G+ ++ G
Sbjct: 9 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 126
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 127 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 165
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
DE T LD + ++ C +G T++ H ++ A + ++ G++ K
Sbjct: 166 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 222
Query: 235 LAEL 238
EL
Sbjct: 223 HKEL 226
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG +GSGK+TL K++ G+ ++ G
Sbjct: 7 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 124
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 125 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 163
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
DE T LD + ++ C +G T++ H ++ A + ++ G++ K
Sbjct: 164 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 220
Query: 235 LAEL 238
EL
Sbjct: 221 HKEL 224
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG +GSGK+TL K++ G+ ++ G
Sbjct: 13 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 130
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 131 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 169
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
DE T LD + ++ C +G T++ H ++ A + ++ G++ K
Sbjct: 170 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 226
Query: 235 LAEL 238
EL
Sbjct: 227 HKEL 230
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 16/225 (7%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
+K + F+Y + + + PG LVG NGSGK+T+ +L GK
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSA-GEIPLQGDFSAEHMIFG 124
++ G +VQ + + TQ+ G L G S+ + + P + +A M G
Sbjct: 77 LLDGEPLVQYDHH--YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
D + + D ++ +++S GQR+ V + L+ ++L+LD T LD
Sbjct: 135 AH--DFI--SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
++ + + E T++ T L A H+ ++++G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLS-LAERAHHILFLKEGSV 234
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 50/244 (20%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG GSGK+TL K++ G+ ++ G
Sbjct: 9 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 126
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 127 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 165
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
DE T LD + ++ C +G T++ H ++ A + ++ G++ K
Sbjct: 166 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 222
Query: 235 LAEL 238
EL
Sbjct: 223 HKEL 226
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGG 70
++ V + F Y+ + LF N ++ G ++G NG GK+TLL +L G H + G
Sbjct: 4 ALSVENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 71 RDVVQVLN-RSSFHDTQLVCSG-DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGS 128
+V Q + F + S D+ +G S + P D+ ++
Sbjct: 62 IEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK---PKSHDYQV-----AMQAL 113
Query: 129 DPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
D + L + +S GQR+ + I + K++LLDE T LD+ +
Sbjct: 114 DYLNLTHLAK-------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 189 LLDFFKDECEQRGATIVYATH 209
+L D + + T+V+ TH
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTH 187
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 4 GMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
G+ N +++ G+ F+Y P+ +L + G LVG++G GK+T
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKST------ 1074
Query: 64 GKHMVGGRDVVQVLNRSSFHD----TQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDFS- 117
VVQ+L R F+D + + ++ L W + +G + P+ D S
Sbjct: 1075 ---------VVQLLER--FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 118 AEHMIFG-----------VEGSDPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQIC 162
AE++ +G V + + I+ L R+ ++S GQ++R+ I
Sbjct: 1124 AENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222
L+ +LLLDE T LD + + + E G T + H ++ A +
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIV 1240
Query: 223 YIQDGELR 230
IQ+G+++
Sbjct: 1241 VIQNGKVK 1248
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI-------LAGKHMVGGR 71
+ FSY + + NL + G LVG +G GK+T +++ L G + G+
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 72 DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
D+ + +N + V S + + ++ + E D + + + V+ ++
Sbjct: 453 DI-RTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-----DVTMDEIEKAVKEANAY 506
Query: 132 RR-ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
+L D + R ++S GQ++R+ I L+ K+LLLDE T LD
Sbjct: 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 4 GMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
G+ N +++ G+ F+Y P+ +L + G LVG++G GK+T
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKST------ 1074
Query: 64 GKHMVGGRDVVQVLNRSSFHD----TQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDFS- 117
VVQ+L R F+D + + ++ L W + +G + P+ D S
Sbjct: 1075 ---------VVQLLER--FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 118 AEHMIFG-----------VEGSDPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQIC 162
AE++ +G V + + I+ L R+ ++S GQ++R+ I
Sbjct: 1124 AENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222
L+ +LLLDE T LD + + + E G T + H ++ A +
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIV 1240
Query: 223 YIQDGELR 230
IQ+G+++
Sbjct: 1241 VIQNGKVK 1248
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI-------LAGKHMVGGR 71
+ FSY + + NL + G LVG +G GK+T +++ L G + G+
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 72 DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
D+ + +N + V S + + ++ + E D + + + V+ ++
Sbjct: 453 DI-RTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-----DVTMDEIEKAVKEANAY 506
Query: 132 RR-ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
+L D + R ++S GQ++R+ I L+ K+LLLDE T LD
Sbjct: 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
++F Y+ D P + + NL I G +VG +GSGK+TL K++ G+ ++ G
Sbjct: 13 IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 72 DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
D+ VL + + ++ + L+ G S K + A ++ DF +E
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 130
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
+ I G +G+ +S GQR+R+ I L++ K+L+
Sbjct: 131 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 169
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
D+ T LD + ++ C +G T++ H ++ A + ++ G++ K
Sbjct: 170 DQATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 226
Query: 235 LAEL 238
EL
Sbjct: 227 HKEL 230
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 20 QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR 79
+ +Y +D N+ I G ++G NG GK+TL + G +L
Sbjct: 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-----------ILKP 60
Query: 80 SS---FHDTQLVCSGDLSYLG-GSWSKTVGSAGEIPLQGDFSA---EHMIFGVEG----S 128
SS D + + D S G +++G + P FSA + + FG
Sbjct: 61 SSGRILFDNKPI---DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE 117
Query: 129 DPVRRERLIELLDIDLQW----RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
D +R+ L ++ H +S GQ++RV I L+ KVL+LDE T LD +
Sbjct: 118 DEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
+++ + ++ G TI+ ATH D + + ++ +++G +
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGR 71
+ F+Y +D + D + P S G +G GK+T+ +L AG+ + G+
Sbjct: 7 VDFAY--DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 72 DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
+ + + ++ S D + + G+ + + L+GD++ E + + V
Sbjct: 65 PIDNI-SLENWRSQIGFVSQDSAIMAGTIRENLTYG----LEGDYTDEDL-WQVLDLAFA 118
Query: 132 RR--ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
R E + + L+ ++ R K+S GQR+R+ I L K+L+LDE T LD
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 21 FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
F+Y G D P L + NL I G LVG +GSGK+T+ ++ G+ ++ G D+
Sbjct: 349 FTYPGRDVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDL 407
Query: 74 VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
+ +S + + S ++ + + + A +S E + E +
Sbjct: 408 RE-YTLASLRNQVALVSQNVHLFNDTVANNIAYART----EQYSREQI---EEAARMAYA 459
Query: 134 ERLIELLDIDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
I +D L + + +S GQR+R+ I LL +L+LDE T LD + +
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 190 LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
DE ++ ++V A H +E A + ++DG
Sbjct: 520 QAAL-DELQKNRTSLVIA-HRLSTIEK-ADEIVVVEDG 554
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
+KV +F Y G KP + D N S SR ++G NG+GK+TL+ +L G+
Sbjct: 666 VKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
+KV +F Y G KP + D N S SR ++G NG+GK+TL+ +L G+
Sbjct: 672 VKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 14/230 (6%)
Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGR 71
+ F+Y + + PG LVG NGSGK+T+ +L G+ ++ G+
Sbjct: 20 VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK 79
Query: 72 DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA-GEIPLQGDFSAEHMIFGVEGSDP 130
+ Q +R H + G S + + + P + +A + G
Sbjct: 80 PLPQYEHR-YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFI- 137
Query: 131 VRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
L + D ++ ++S GQR+ V + L+ VL+LD+ T LD +++ +
Sbjct: 138 ---SGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 194
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
+ E+ +++ T +E A H+ +++ G +R +L E
Sbjct: 195 QLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLME 243
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 41 PGSRCLLVGANGSGKTTLLKILAGKHMVG-GR--------DVVQVLNRSSFHD--TQLVC 89
PG LVG NG GK+T LKILAGK GR ++++ S + T+++
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWR 147
+ + + + A + P+Q E + +E S P +R I++L ++ L+
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQK--VGELLKLRMEKS-PEDVKRYIKILQLENVLKRD 218
Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
+ K+S G+ +R I M + V + DE + LDV R++
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 46 LLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTV 104
+++G NG+GKTTL+K+LAG G+D+ +L S + + TV
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQDI-----------PKLNVSMKPQKIAPKFPGTV 430
Query: 105 GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMG 164
++G F +D V+ R+ +++D ++Q +S G+ +RV I +
Sbjct: 431 RQLFFKKIRGQFLNPQF-----QTDVVKPLRIDDIIDQEVQH----LSGGELQRVAIVLA 481
Query: 165 LLHPFKVLLLDEITVDLDVVARM 187
L P + L+DE + LD R+
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRI 504
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 16/225 (7%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
+K + F+Y + + + PG LVG NGSGK+T+ +L GK
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSA-GEIPLQGDFSAEHMIFG 124
++ G +VQ + + TQ+ G L G S+ + + P + +A M G
Sbjct: 77 LLDGEPLVQYDHH--YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
D + + D ++ ++++ GQR+ V + L+ ++L+LD T LD
Sbjct: 135 AH--DFI--SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
++ + + E T++ T L A H+ ++++G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLS-LAERAHHILFLKEGSV 234
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 33/192 (17%)
Query: 25 GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI-------LAGKHMVGGRDVVQVL 77
G DKP + + I G+ G NG GKTTLLK L G+ + G + +V
Sbjct: 19 GYDKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVK 77
Query: 78 NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
+ F +++ +S + K V S ++GV+ V + ++
Sbjct: 78 GKIFFLPEEIIVPRKISV--EDYLKAVAS---------------LYGVK----VNKNEIM 116
Query: 138 ELLD----IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
+ L+ +DL+ ++ ++S G RRVQ+ LL ++ +LD+ V +D ++ +L
Sbjct: 117 DALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 194 KDECEQRGATIV 205
+ +++G I+
Sbjct: 177 LEILKEKGIVII 188
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 62/225 (27%)
Query: 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
+I+ G++ Y G + F I G L+G +GSGKTT+L+++AG
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQ--IREGEMVGLLGPSGSGKTTILRLIAG-------- 63
Query: 73 VVQVLNRSSFHDTQLVCSGDLSYLGGS-------WSKTVGSAGEIPLQGDFSAEHMI--- 122
L R + GD+ ++GG + VG + Q +HM
Sbjct: 64 ----LERPT--------KGDV-WIGGKRVTDLPPQKRNVG----LVFQNYALFQHMTVYD 106
Query: 123 ---FGVEGSDPVRRERLIELLDIDLQWRM---------------HKVSDGQRRRVQICMG 164
FG+ RE+ + ++D + R H++S GQ++RV +
Sbjct: 107 NVSFGL-------REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159
Query: 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
L +VLL DE +D R +L F + ++ G T V+ TH
Sbjct: 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 39/190 (20%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
I + + F Y N+ P+ D NL I G VG +G GK+TL+ ++ +G+
Sbjct: 340 IDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-- 124
++ G ++ L S + LV ++ + D E+++ G
Sbjct: 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILF------------------SDTVKENILLGRP 440
Query: 125 -------VEGSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
VE + I L D ++ R K+S GQ++R+ I L+ +L+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500
Query: 174 LDEITVDLDV 183
LDE T LD+
Sbjct: 501 LDEATSALDL 510
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQL 87
NL I G +L+G +G GKTT L+++AG + G RDV + + + +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 87
Query: 88 VCSGDLSYLGGSWSK-TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER-LIELLDID-- 143
V SY W TV PL+ I + +R R ELL I+
Sbjct: 88 VFQ---SY--AVWPHMTVYENIAFPLK--------IKKFPKDEIDKRVRWAAELLQIEEL 134
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L ++S GQR+RV + ++ VLL+DE +LD R+ + K ++ T
Sbjct: 135 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 204 IVYATHIFDGLE--TWATHLAYIQDGEL 229
+Y TH D +E T +A + G+L
Sbjct: 195 TIYVTH--DQVEAMTMGDRIAVMNRGQL 220
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQL 87
NL I G +L+G +G GKTT L+++AG + G RDV + + + +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 88
Query: 88 VCSGDLSYLGGSWSK-TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER-LIELLDID-- 143
V SY W TV PL+ I + +R R ELL I+
Sbjct: 89 VFQ---SY--AVWPHMTVYENIAFPLK--------IKKFPKDEIDKRVRWAAELLQIEEL 135
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L ++S GQR+RV + ++ VLL+DE +LD R+ + K ++ T
Sbjct: 136 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 204 IVYATHIFDGLE--TWATHLAYIQDGEL 229
+Y TH D +E T +A + G+L
Sbjct: 196 TIYVTH--DQVEAMTMGDRIAVMNRGQL 221
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 21 FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
F+Y G + P L + NL I G LVG +GSGK+T+ ++ G ++ G D+
Sbjct: 349 FTYPGREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
Query: 74 VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA--GEIPLQGDFSAEHMIFGVEGSDPV 131
+ +S + + S ++ + + + A E + A M + ++ +
Sbjct: 408 RE-YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN-- 464
Query: 132 RRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
++ LD + +S GQR+R+ I LL +L+LDE T LD + +
Sbjct: 465 ---KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
DE ++ ++V A H +E A + ++DG
Sbjct: 522 AL-DELQKNRTSLVIA-HRLSTIEQ-ADEIVVVEDG 554
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
I+ + FSY D D + + PG LVG +G+GK+T+L++L +G
Sbjct: 54 IEFENVHFSYA--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 67 MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-- 124
+ G+D+ QV S S++G TV L D A+++ +G
Sbjct: 112 RIDGQDISQVTQASL-----------RSHIGVVPQDTV-------LFNDTIADNIRYGRV 153
Query: 125 VEGSDPVRRE-----------RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
G+D V E + R K+S G+++RV I +L ++L
Sbjct: 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL 213
Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
LDE T LD + C R TIV A + + A + I+DG
Sbjct: 214 LDEATSALDTSNERAIQASLAKVCANR-TTIVVAHRLSTVVN--ADQILVIKDG 264
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
+ N+ I G R ++G +G+GKTT ++I+AG + ++ + D +LV S
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--------YFDDRLVASNG- 73
Query: 94 SYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVEG----SDPVRR--ERLIELLDID-- 143
+ + +G + L + +A E++ F + + +R+ E + ++LDI
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L ++S GQ++RV + L+ +LLLDE +LD R K+ + G T
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
++ +H + A + + G+L + K +L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL------AGKHM 67
+K G+ S +G ++ L + NL ++ G + +++G NGSGKTTLL+ + +G
Sbjct: 4 LKNVGITLSGKGYERFSL-ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIF 61
Query: 68 VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG 127
+ G +V ++ N Y+ +S + A EI + + +++ E
Sbjct: 62 INGMEVRKIRN----------------YI--RYSTNLPEAYEIGV----TVNDIVYLYEE 99
Query: 128 SDPVRRERLIELLDI------DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
+ R+ +E+L L+ +++K+S GQ V+ + L +++ LDE ++
Sbjct: 100 LKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
D AR ++ + E + G + TH D L + + AY G
Sbjct: 160 D-AARRHVISRYIKEYGKEG---ILVTHELDMLNLYKEYKAYFLVG 201
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 24/262 (9%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLL-----------KILAGKHMVGGRDVVQV----LNR 79
+L I S +VG + SGK+T++ +IL+G+ + G+D++ + L +
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 80 SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL 139
+ + LV L + + G H + S+ +R RL
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHG-VRWSHSELIEKASEKLRMVRLNP- 144
Query: 140 LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
+ L ++S G ++RV I + LL VL+LDE T LDV+ + ++ K+ +
Sbjct: 145 -EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLS--VVESWLRS 257
T+++ TH A +A I G L E + +N + + ++ S +
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNL--VEYNSTFQIFKNPLHPYTRGLINSIMAV 261
Query: 258 ETKLEKKRPV--DPPKQVQKTS 277
+ K +P+ DPP + S
Sbjct: 262 NADMSKVKPIPGDPPSLLNPPS 283
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
+ N+ I G R ++G +G+GKTT ++I+AG + ++ + D +LV S
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--------YFDDRLVASNG- 73
Query: 94 SYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVEG----SDPVRR--ERLIELLDID-- 143
+ + +G + L + +A E++ F + + +R+ E + ++LDI
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L ++S Q++RV + L+ +LLLDE +LD R K+ + G T
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
++ +H + A + + G+L + K +L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 22/211 (10%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGR-----DVVQVLNRSSFHDTQL 87
D +L I G +L+G +G GKTT L+ +AG + G+ ++V + F +
Sbjct: 24 DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK- 82
Query: 88 VCSGDLSYLGGSWS----KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID 143
D++ + S++ TV PL+ + I D RE + E L +
Sbjct: 83 --ERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEI------DKRVRE-VAEXLGLT 133
Query: 144 --LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
L + ++S GQR+RV + ++ KV L DE +LD R+ K Q G
Sbjct: 134 ELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLG 193
Query: 202 ATIVYATHIFDGLETWATHLAYIQDGELRRA 232
T +Y TH T +A GEL++
Sbjct: 194 VTTIYVTHDQVEAXTXGDRIAVXNKGELQQV 224
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 26/213 (12%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG------KHMVGGRDVVQVLNRSSFHDTQL 87
+ +L + G +L+G +G GKTT L+++AG + G +V + F +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK- 79
Query: 88 VCSGDLSYLGGSWS----KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID 143
D++ + S++ TV PL+ I D RE + ELL +
Sbjct: 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI------DQRVRE-VAELLGLT 130
Query: 144 --LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
L + ++S GQR+RV + ++ +V L+DE +LD R+ + K Q G
Sbjct: 131 ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 202 ATIVYATHIFDGLE--TWATHLAYIQDGELRRA 232
T +Y TH D +E T +A + G L++
Sbjct: 191 VTTIYVTH--DQVEAMTMGDRIAVMNRGVLQQV 221
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GK 65
S+ ++F Y N P L N + PGS ++G GSGK+TL+ ++ G+
Sbjct: 341 SVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399
Query: 66 HMVGGRDVVQVLNR------SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
V DV V + S+ ++ SG + W + + EI +
Sbjct: 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE-NLKWGREDATDDEIVEAAKIAQI 458
Query: 120 H--MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
H +I EG D R ER S GQ++R+ I L+ KVL+LD+
Sbjct: 459 HDFIISLPEGYDS-RVER-----------GGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 178 TVDLDVVARMDLLDFFK 194
T +D + +LD K
Sbjct: 507 TSSVDPITEKRILDGLK 523
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
P+ D +L + PG ++GA+G GKTTLL+ LAG
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 43/225 (19%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQ 86
+ +L + G +++G G+GKT L+++AG H ++ G+DV + HD
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL--SPEKHDIA 75
Query: 87 LV-----------CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
V +L + G K + D EH++ +P+
Sbjct: 76 FVYQNYSLFPHMNVKKNLEF-GMRMKKIKDPKRVLDTARDLKIEHLL----DRNPL---- 126
Query: 136 LIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195
+S G+++RV + L+ K+LLLDE LD + + +
Sbjct: 127 --------------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172
Query: 196 ECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
++ T+++ TH A +A + DG+L + K E+ E
Sbjct: 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 39 ISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGG 98
I+ G + +L G NG+GKTTLL IL + V + + G + Y
Sbjct: 44 IAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGK---------XPGKVGYSAE 93
Query: 99 SWSKTVGSAGEIPLQGDFSAEHMI----------FGV--EGSDPVRRE--RLIELL--DI 142
+ + +G L+ E +I GV + D +R E +L++L+
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSA 153
Query: 143 DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
Q + +S G+++RV I L +VL+LDE LD +AR LL +
Sbjct: 154 KAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213
Query: 203 -TIVYATHIFDGLETWATHLAYIQDGE 228
+Y TH + + + + ++DG+
Sbjct: 214 LAXIYVTHFIEEITANFSKILLLKDGQ 240
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 21/172 (12%)
Query: 39 ISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGG 98
I G +VG NG GKTT +K LAG V+ + L + Y+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAG---------VEEPTEGKI-EWDLTVAYKPQYIKA 358
Query: 99 SWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWR-MHKVSDGQRR 157
+ TV L A + S+ + E L L IDL R ++++S G+ +
Sbjct: 359 DYEGTV-----YELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVNELSGGELQ 408
Query: 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
RV I LL + LLDE + LDV R+ + + E+ T + H
Sbjct: 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 39 ISPGSRCLLVGANGSGKTTLLKILAGK---HMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
+ G +VG NG+GK+T +KILAG+ ++ G D + R +F +L
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIR-AFRGNEL--QNYFEK 100
Query: 96 LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV-RRERLIELLDID--LQWRMHKVS 152
L + V + L +I ++ +D + E +++ L+++ L+ + +S
Sbjct: 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLS 160
Query: 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212
G+ +RV I LL DE + LD+ R++ + E+ G +++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLA 219
Query: 213 GLETWA--THLAYIQDG 227
L+ + H+ Y + G
Sbjct: 220 VLDYLSDIIHVVYGEPG 236
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 40 SPGSRCLL--VGANGSGKTTLLKILAGKHMVG--------GRDVVQVLNR---------- 79
+P + +L +G NG GKTT+LKILAG+ + G+D +VL R
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD--EVLKRFRGKEIYNYF 78
Query: 80 SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL 139
+ +L + Y+ + G+ EI + D +++ + EL
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG-------------KKDEVKEL 125
Query: 140 LDIDLQWR--MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC 197
L++ W + +S G +R+ + LL V + D+ + LDV RM++ ++
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 198 EQRGATIV 205
+ + +V
Sbjct: 186 KNKYVIVV 193
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 35 FNLGISPGS-----RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
F L + PG +VG NG GKTT +K+LAG V + L
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----------EWDLTV 419
Query: 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWR-M 148
+ Y+ + G+ E+ + D S + F + E L L IDL R +
Sbjct: 420 AYKPQYIKAEYE---GTVYELLSKIDSSKLNSNF-------YKTELLKPLGIIDLYDRNV 469
Query: 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208
+S G+ +RV I LL + LLDE + LDV R+ + + E+ T +
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 209 H 209
H
Sbjct: 530 H 530
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 47 LVGANGSGKTTLLKILAGK 65
+VG NG+GKTT +KILAG+
Sbjct: 122 IVGPNGTGKTTAVKILAGQ 140
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L +H++S G+ +RV I LL DE + LD+ R+ + + G
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR-RLANEGKA 280
Query: 204 IVYATHIFDGLETWA--THLAYIQDG 227
++ H L+ + H+ Y + G
Sbjct: 281 VLVVEHDLAVLDYLSDVIHVVYGEPG 306
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 35 FNLGISPGS-----RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
F L + PG +VG NG GKTT +K+LAG V + L
Sbjct: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----------EWDLTV 405
Query: 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWR-M 148
+ Y+ + G+ E+ + D S + F + E L L IDL R +
Sbjct: 406 AYKPQYIKAEYE---GTVYELLSKIDSSKLNSNF-------YKTELLKPLGIIDLYDRNV 455
Query: 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208
+S G+ +RV I LL + LLDE + LDV R+ + + E+ T +
Sbjct: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
Query: 209 H 209
H
Sbjct: 516 H 516
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 47 LVGANGSGKTTLLKILAGK 65
+VG NG+GKTT +KILAG+
Sbjct: 108 IVGPNGTGKTTAVKILAGQ 126
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L +H++S G+ +RV I LL DE + LD+ R+ + + G
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR-RLANEGKA 266
Query: 204 IVYATHIFDGLETWA--THLAYIQDG 227
++ H L+ + H+ Y + G
Sbjct: 267 VLVVEHDLAVLDYLSDVIHVVYGEPG 292
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNR--SSFHDT 85
+L + G ++GA+GSGK+TLL IL GK + G++V + S +
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82
Query: 86 QLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR-ERLIELLDI-- 142
+L YL E+ + + G + R E L+ L +
Sbjct: 83 KLGFVFQFHYL----------IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD 132
Query: 143 DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
L + +++S G+++RV I L + +L DE T +LD ++D F + + G
Sbjct: 133 KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL-KINEGGT 191
Query: 203 TIVYATH 209
+IV TH
Sbjct: 192 SIVMVTH 198
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
L D +L I+ G ++G NG+GK+TLL++L G
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210
+S GQ++RV I L VLL DE T LD ++L + E+ G T+V TH
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE 212
Query: 211 FDGLETWATHLAYIQDGEL 229
++H+ ++ G++
Sbjct: 213 MGFARHVSSHVIFLHQGKI 231
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 47 LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR--SSFHDTQLVCSGDLSYLGGSWSKTV 104
LVG NG+GK+TLL +AG M G+ +Q + ++ T+L +YL S +T
Sbjct: 31 LVGPNGAGKSTLLARMAG--MTSGKGSIQFAGQPLEAWSATKLAL--HRAYL--SQQQTP 84
Query: 105 GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL-----LDIDLQWRMHKVSDGQRRRV 159
A + + D R E L ++ LD L +++S G+ +RV
Sbjct: 85 PFATPV---------WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 160 QICMGLLH-------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
++ +L ++LLLD+ LD VA+ LD Q+G IV ++H
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMCSLD-VAQQSALDKILSALSQQGLAIVMSSH 191
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 47 LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR--SSFHDTQLVCSGDLSYLGGSWSKTV 104
LVG NG+GK+TLL +AG M G+ +Q + ++ T+L +YL S +T
Sbjct: 31 LVGPNGAGKSTLLARMAG--MTSGKGSIQFAGQPLEAWSATKLAL--HRAYL--SQQQTP 84
Query: 105 GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL-----LDIDLQWRMHKVSDGQRRRV 159
A + + D R E L ++ LD L +++S G+ +RV
Sbjct: 85 PFATPV---------WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 160 QICMGLLH-------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
++ +L ++LLLD+ LD VA+ LD Q+G IV ++H
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMNSLD-VAQQSALDKILSALSQQGLAIVMSSH 191
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSG--- 91
++ ++ G L++G NGSGK+TL+ ++ G GR + + ++ +L G
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86
Query: 92 ------DLSYLGGSWSKTVGS--AGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID 143
L + + +G GE PL F + + E + + +++E L +
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLKLS 144
Query: 144 LQW--RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
+ + ++S GQ + V+I L+ K++++DE + D+ + E + +G
Sbjct: 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL-ELKAKG 203
Query: 202 ATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWL 255
T + H D + + HL + +G++ AE E +E++N + VVE ++
Sbjct: 204 ITFLIIEHRLDIVLNYIDHLYVMFNGQI-IAEGRGE-EEIKNVLSDPKVVEIYI 255
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSG--- 91
++ + G L++G NGSGK+TL+ ++ G GR + + ++ +L G
Sbjct: 27 SISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86
Query: 92 ------DLSYLGGSWSKTVG--SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID 143
L + + +G + GE PL F + + E + + +++E L +
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLKLS 144
Query: 144 LQW--RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
+ + ++S GQ + V+I L+ K++++DE + D+ + E + +G
Sbjct: 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL-ELKAKG 203
Query: 202 ATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWL 255
T + H D + + HL + +G++ AE E +E++N + VVE ++
Sbjct: 204 ITFLIIEHRLDIVLNYIDHLYVMFNGQI-IAEGRGE-EEIKNVLSDPKVVEIYI 255
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG 70
+NSI V F++ +D PP I G+ +VG G GK++LL L +
Sbjct: 1 MNSITVRNATFTWARSD-PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE----- 54
Query: 71 RDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD 129
+++ H + G ++Y+ +W +Q D E+++FG + +
Sbjct: 55 ------MDKVEGH---VAIKGSVAYVPQQAW-----------IQNDSLRENILFGCQLEE 94
Query: 130 PVRRERL--------IELLD----IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE 176
P R + +E+L ++ + +S GQ++RV + + + L D+
Sbjct: 95 PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSG--- 91
++ ++ G L++G NGSGK+TL+ ++ G GR + + ++ +L G
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86
Query: 92 ------DLSYLGGSWSKTVG--SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID 143
L + + +G + GE PL F + + E + + +++E L +
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLKLS 144
Query: 144 LQW--RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
+ + ++S GQ + V+I L+ K++++D+ + D+ + E + +G
Sbjct: 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL-ELKAKG 203
Query: 202 ATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWL 255
T + H D + + HL + +G++ AE E +E++N + VVE ++
Sbjct: 204 ITFLIIEHRLDIVLNYIDHLYVMFNGQI-IAEGRGE-EEIKNVLSDPKVVEIYI 255
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82
P+ + NL I G + G+ GSGKT+LL ++ G+ + +++ R SF
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEASEGIIKHSGRVSF 103
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82
P+ + NL I G + G+ GSGKT+LL ++ G+ + +++ R SF
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82
P+ + NL I G + G+ GSGKT+LL ++ G+ + +++ R SF
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEASEGIIKHSGRVSF 103
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82
P+ + NL I G + G+ GSGKT+LL ++ G+ + +++ R SF
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEASEGIIKHSGRVSF 103
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82
P+ + NL I G + G+ GSGKT+LL ++ G+ + +++ R SF
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEASEGIIKHSGRVSF 103
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
L + ++S G+R+RV + L+ ++LLLDE +D+ + L++ + +
Sbjct: 120 LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP 179
Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRN 243
I++ TH A +A + +G + KL EL +N
Sbjct: 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN 219
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
DF +G C+L+G G+GK+ L+++AG
Sbjct: 19 DFEMG---RDYCVLLGPTGAGKSVFLELIAG 46
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLL 59
++K +++ GN + + + ISPG R L+G GSGK+TLL
Sbjct: 21 TVKDLTAKYTEGGN---AILENISFSISPGQRVGLLGRTGSGKSTLL 64
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 27 DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
D + NL + G L+G NG+GK+TL KILAG
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 24/223 (10%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGK---HMVGGRDVVQVLNRSSFHDTQLVCSG 91
+L + PG ++G NGSGK+TL LAG+ + GG V+ + + +G
Sbjct: 20 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG--TVEFKGKDLLALSPEDRAG 77
Query: 92 DLSYLGGSWSKTV-GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE----LLDI--DL 144
+ ++ + + G + + LQ +A G E D + L+E LL + DL
Sbjct: 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL 137
Query: 145 QWRMHKV--SDGQRRRVQIC-MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
R V S G+++R I M +L P ++ +LDE LD+ A + D + +
Sbjct: 138 LTRSVNVGFSGGEKKRNDILQMAVLEP-ELCILDESDSGLDIDALKVVADGVNSLRDGKR 196
Query: 202 ATIVYATH---IFDGLETWATHLAY----IQDGELRRAEKLAE 237
+ I+ TH I D ++ H+ Y ++ G+ ++L E
Sbjct: 197 SFII-VTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEE 238
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 24/223 (10%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGK---HMVGGRDVVQVLNRSSFHDTQLVCSG 91
+L + PG ++G NGSGK+TL LAG+ + GG V+ + + +G
Sbjct: 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG--TVEFKGKDLLALSPEDRAG 96
Query: 92 DLSYLGGSWSKTV-GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE----LLDI--DL 144
+ ++ + + G + + LQ +A G E D + L+E LL + DL
Sbjct: 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL 156
Query: 145 QWRMHKV--SDGQRRRVQIC-MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
R V S G+++R I M +L P ++ +LDE LD+ A + D + +
Sbjct: 157 LTRSVNVGFSGGEKKRNDILQMAVLEP-ELCILDESDSGLDIDALKVVADGVNSLRDGKR 215
Query: 202 ATIVYATH---IFDGLETWATHLAY----IQDGELRRAEKLAE 237
+ I+ TH I D ++ H+ Y ++ G+ ++L E
Sbjct: 216 SFII-VTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEE 257
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 35 FNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV----VQVLNRSSF 82
+L + G L+GANG+GKTT L +A GK + G+D+ V+NR
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGI 83
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 69
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P+ D N I G + G+ G+GKT+LL ++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88
R +L+G G GK+TL I AG H D +VL ++ T +V
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMV 51
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88
R +L+G G GK+TL I AG H D +VL ++ T +V
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMV 51
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 38 GISPGSRCLLVGANGSGKTTLLK-----ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92
GI+ G ++ G GSGKTT +K I + ++ D +++ + + TQL G+
Sbjct: 167 GIAIGKNVIVCGGTGSGKTTYIKSIXEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGN 226
Query: 93 LS 94
++
Sbjct: 227 IT 228
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88
R +L+G G GK+TL I AG H D +VL ++ T +V
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMV 82
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 38 GISPGSRCLLVGANGSGKTTLLK-----ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92
GI+ G ++ G GSGKTT +K I + ++ D +++ + + TQL G+
Sbjct: 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGN 226
Query: 93 LS 94
++
Sbjct: 227 IT 228
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88
R +L+G G GK+TL I AG H D +VL ++ T +V
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMV 51
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
P Y+ +GI P +L GA G+GKT L K +A +
Sbjct: 205 PELYE-EMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 131 VRRERLIELLDIDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
+ R ++++ + DL +R K + +VQ+ G+ HPF LLD++ +D + AR
Sbjct: 204 IVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIAHPF---LLDQLGLDKE-QAR 259
Query: 187 MDLLD 191
+ L D
Sbjct: 260 LTLDD 264
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMV 68
NLG LLVG G+GKT L K +AG+ V
Sbjct: 38 NLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLE 215
A L+D + E R A + YA+ IFDG E
Sbjct: 254 ATRSLIDKITSDSENRVALVTYASTIFDGTE 284
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 39 ISPGSRCLLVGANGSGKTTLLKILA 63
I PG R LL+GA G+ + LL +L+
Sbjct: 116 IRPGLRILLIGAGGASRGVLLPLLS 140
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 44 RCLLVGANGSGKTTLLKILAGK-----HMVGGRDVVQVLNRSSFHDTQLVC--SGDLSYL 96
R +L+G G GKT+L + AGK H G DV + DT LV + + L
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 97 GGSWSK 102
SWS+
Sbjct: 66 DKSWSQ 71
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 44 RCLLVGANGSGKTTLLKILAGKHM 67
R LL+G + +GKTTLLK LA + +
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDI 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,383,157
Number of Sequences: 62578
Number of extensions: 391172
Number of successful extensions: 1475
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 191
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)