Query 022663
Match_columns 294
No_of_seqs 457 out of 2289
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 6.9E-58 1.5E-62 384.8 20.6 219 12-245 1-230 (240)
2 COG1120 FepC ABC-type cobalami 100.0 2.8E-55 6.2E-60 384.5 20.2 218 13-244 2-232 (258)
3 COG1125 OpuBA ABC-type proline 100.0 3.5E-54 7.5E-59 369.7 21.1 227 13-258 1-239 (309)
4 COG1124 DppF ABC-type dipeptid 100.0 4.2E-52 9.2E-57 356.0 22.3 221 12-241 2-232 (252)
5 COG1135 AbcC ABC-type metal io 100.0 2.4E-52 5.1E-57 367.8 21.3 223 13-244 1-235 (339)
6 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.4E-52 5.2E-57 364.4 20.9 216 11-243 2-230 (254)
7 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-51 4.6E-56 350.5 22.0 220 11-242 6-237 (263)
8 COG1116 TauB ABC-type nitrate/ 100.0 1.6E-51 3.5E-56 355.1 21.1 197 12-227 2-207 (248)
9 COG3638 ABC-type phosphate/pho 100.0 1.5E-51 3.2E-56 350.6 19.2 218 12-240 2-237 (258)
10 COG3842 PotA ABC-type spermidi 100.0 1.9E-51 4.1E-56 375.0 19.0 217 11-244 3-230 (352)
11 COG4555 NatA ABC-type Na+ tran 100.0 5.4E-51 1.2E-55 339.1 17.0 222 13-250 1-232 (245)
12 COG3839 MalK ABC-type sugar tr 100.0 2.4E-50 5.3E-55 365.9 20.9 215 12-243 2-226 (338)
13 COG1118 CysA ABC-type sulfate/ 100.0 1.5E-50 3.4E-55 355.6 18.7 219 13-245 2-232 (345)
14 COG1136 SalX ABC-type antimicr 100.0 9.1E-50 2E-54 343.4 21.6 209 13-230 1-221 (226)
15 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-49 2.4E-54 348.2 21.4 217 12-241 2-229 (235)
16 COG1131 CcmA ABC-type multidru 100.0 1.5E-49 3.3E-54 359.9 23.1 215 12-241 3-227 (293)
17 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-48 3.1E-53 360.0 23.1 221 13-242 1-232 (343)
18 PRK11650 ugpC glycerol-3-phosp 100.0 2.4E-48 5.3E-53 360.8 23.3 214 12-242 2-226 (356)
19 PRK13537 nodulation ABC transp 100.0 1.7E-48 3.6E-53 355.7 21.7 213 12-241 6-228 (306)
20 PRK13536 nodulation factor exp 100.0 2.5E-48 5.4E-53 358.7 22.2 214 11-241 39-262 (340)
21 TIGR03265 PhnT2 putative 2-ami 100.0 3.9E-48 8.4E-53 359.1 23.1 216 11-243 2-227 (353)
22 COG0411 LivG ABC-type branched 100.0 5.5E-49 1.2E-53 337.0 15.7 217 12-242 3-241 (250)
23 PRK11432 fbpC ferric transport 100.0 5.2E-48 1.1E-52 357.8 23.4 216 11-243 4-229 (351)
24 cd03261 ABC_Org_Solvent_Resist 100.0 5.6E-48 1.2E-52 339.8 22.2 215 14-240 1-226 (235)
25 COG3840 ThiQ ABC-type thiamine 100.0 5.2E-48 1.1E-52 316.6 19.7 212 13-243 1-222 (231)
26 PRK09536 btuD corrinoid ABC tr 100.0 8.2E-48 1.8E-52 361.1 23.5 215 12-242 2-230 (402)
27 COG1117 PstB ABC-type phosphat 100.0 2.1E-48 4.5E-53 326.4 17.0 221 11-245 5-242 (253)
28 PRK09452 potA putrescine/sperm 100.0 2.6E-47 5.6E-52 355.6 23.5 216 11-243 12-237 (375)
29 COG2884 FtsE Predicted ATPase 100.0 1.3E-47 2.7E-52 316.3 18.6 210 13-234 1-220 (223)
30 PRK11000 maltose/maltodextrin 100.0 2.7E-47 5.9E-52 355.7 23.0 214 12-242 2-225 (369)
31 PRK10851 sulfate/thiosulfate t 100.0 3.9E-47 8.5E-52 352.3 23.8 213 13-242 2-228 (353)
32 cd03296 ABC_CysA_sulfate_impor 100.0 3.3E-47 7.2E-52 335.8 22.0 212 13-241 2-227 (239)
33 cd03259 ABC_Carb_Solutes_like 100.0 2.9E-47 6.2E-52 330.4 20.6 204 14-233 1-213 (213)
34 cd03265 ABC_DrrA DrrA is the A 100.0 3.3E-47 7.1E-52 331.7 21.0 208 14-237 1-218 (220)
35 TIGR02315 ABC_phnC phosphonate 100.0 4.5E-47 9.8E-52 335.5 21.5 215 13-238 1-233 (243)
36 TIGR01288 nodI ATP-binding ABC 100.0 4.1E-47 8.8E-52 346.4 21.7 212 13-241 4-225 (303)
37 PRK11607 potG putrescine trans 100.0 7.1E-47 1.5E-51 353.1 23.7 216 11-243 17-242 (377)
38 TIGR03258 PhnT 2-aminoethylpho 100.0 4.6E-47 9.9E-52 352.6 22.2 213 13-242 5-230 (362)
39 cd03256 ABC_PhnC_transporter A 100.0 7.6E-47 1.6E-51 333.5 22.5 215 14-239 1-233 (241)
40 PRK11153 metN DL-methionine tr 100.0 4E-47 8.7E-52 351.6 21.5 220 13-241 1-231 (343)
41 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-46 2.6E-51 335.5 22.6 207 11-236 10-219 (257)
42 PRK15079 oligopeptide ABC tran 100.0 1.5E-46 3.2E-51 345.8 23.9 224 10-242 5-253 (331)
43 PRK13637 cbiO cobalt transport 100.0 1.5E-46 3.2E-51 340.2 23.5 217 13-240 2-234 (287)
44 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-46 2.6E-51 330.8 21.9 219 13-240 1-230 (233)
45 PRK11831 putative ABC transpor 100.0 1.3E-46 2.9E-51 337.5 22.4 219 11-241 5-234 (269)
46 PRK14250 phosphate ABC transpo 100.0 3E-46 6.4E-51 330.1 24.1 214 12-241 2-222 (241)
47 PRK11022 dppD dipeptide transp 100.0 1.7E-46 3.7E-51 345.0 23.4 224 12-242 2-245 (326)
48 TIGR00960 3a0501s02 Type II (G 100.0 7.6E-47 1.6E-51 328.5 19.3 206 13-229 1-216 (216)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-46 3.1E-51 330.9 21.2 212 14-240 1-232 (236)
50 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3E-46 6.4E-51 329.1 23.1 212 13-241 1-222 (236)
51 PRK10575 iron-hydroxamate tran 100.0 2.7E-46 5.9E-51 334.9 22.8 215 11-240 9-237 (265)
52 PRK11308 dppF dipeptide transp 100.0 3.3E-46 7.1E-51 343.2 23.9 223 11-242 3-246 (327)
53 PRK13634 cbiO cobalt transport 100.0 3E-46 6.5E-51 338.6 23.0 220 13-241 2-236 (290)
54 COG1137 YhbG ABC-type (unclass 100.0 1.2E-47 2.6E-52 318.8 12.5 219 11-244 2-232 (243)
55 PRK13647 cbiO cobalt transport 100.0 2.8E-46 6.1E-51 336.3 22.5 211 13-238 4-225 (274)
56 cd03301 ABC_MalK_N The N-termi 100.0 1.8E-46 3.9E-51 325.3 20.4 204 14-233 1-213 (213)
57 PRK11264 putative amino-acid A 100.0 4.7E-46 1E-50 330.4 23.3 221 13-241 3-234 (250)
58 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.1E-46 4.5E-51 326.7 20.5 206 14-235 1-218 (220)
59 cd03268 ABC_BcrA_bacitracin_re 100.0 3.5E-46 7.6E-51 322.5 21.5 202 14-233 1-208 (208)
60 PRK13650 cbiO cobalt transport 100.0 3.6E-46 7.9E-51 336.4 22.4 217 12-241 3-230 (279)
61 PRK13643 cbiO cobalt transport 100.0 3.6E-46 7.7E-51 337.8 22.0 219 13-240 1-233 (288)
62 COG0410 LivF ABC-type branched 100.0 5.6E-46 1.2E-50 316.2 21.7 217 12-242 2-228 (237)
63 PRK09493 glnQ glutamine ABC tr 100.0 5E-46 1.1E-50 328.4 22.2 215 13-241 1-226 (240)
64 PRK10253 iron-enterobactin tra 100.0 5E-46 1.1E-50 333.1 22.5 215 11-240 5-233 (265)
65 cd03266 ABC_NatA_sodium_export 100.0 2.3E-46 5E-51 325.8 19.7 207 13-233 1-218 (218)
66 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-46 5.6E-51 340.7 20.8 211 13-241 2-222 (301)
67 PRK13652 cbiO cobalt transport 100.0 6E-46 1.3E-50 334.7 22.8 216 12-241 2-228 (277)
68 PRK10895 lipopolysaccharide AB 100.0 6.7E-46 1.5E-50 327.8 22.7 214 12-240 2-226 (241)
69 PRK11300 livG leucine/isoleuci 100.0 6E-46 1.3E-50 330.6 22.5 215 12-240 4-243 (255)
70 PRK15093 antimicrobial peptide 100.0 6.3E-46 1.4E-50 342.1 22.9 223 12-241 2-249 (330)
71 TIGR03411 urea_trans_UrtD urea 100.0 9.1E-46 2E-50 327.0 22.8 213 12-240 1-231 (242)
72 PRK13548 hmuV hemin importer A 100.0 1.2E-45 2.5E-50 329.5 23.7 213 13-240 2-230 (258)
73 PRK13636 cbiO cobalt transport 100.0 8.5E-46 1.8E-50 334.6 23.0 218 12-241 4-232 (283)
74 PRK11614 livF leucine/isoleuci 100.0 7.7E-46 1.7E-50 326.6 22.2 215 11-240 3-226 (237)
75 cd03218 ABC_YhbG The ABC trans 100.0 6E-46 1.3E-50 326.1 21.4 212 14-240 1-222 (232)
76 cd03226 ABC_cobalt_CbiO_domain 100.0 4.2E-46 9.2E-51 321.3 20.0 198 15-230 1-205 (205)
77 COG4604 CeuD ABC-type enteroch 100.0 4.4E-47 9.4E-52 314.7 13.1 217 13-244 1-229 (252)
78 cd03224 ABC_TM1139_LivF_branch 100.0 8.4E-46 1.8E-50 323.0 21.5 211 14-239 1-220 (222)
79 COG0444 DppD ABC-type dipeptid 100.0 4.1E-46 8.9E-51 331.8 19.9 224 13-243 1-246 (316)
80 PRK13651 cobalt transporter AT 100.0 1E-45 2.2E-50 337.0 22.9 227 13-241 2-255 (305)
81 PRK13646 cbiO cobalt transport 100.0 9.5E-46 2.1E-50 334.8 22.6 221 13-241 2-236 (286)
82 PRK11231 fecE iron-dicitrate t 100.0 9E-46 1.9E-50 329.7 21.9 212 13-240 2-227 (255)
83 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1E-45 2.3E-50 326.8 22.0 213 14-240 1-225 (242)
84 TIGR01188 drrA daunorubicin re 100.0 4.7E-46 1E-50 339.3 20.2 204 21-241 1-214 (302)
85 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6E-46 1.3E-50 323.2 20.0 207 14-229 1-218 (218)
86 PRK09984 phosphonate/organopho 100.0 1.3E-45 2.8E-50 329.9 22.6 218 12-238 3-240 (262)
87 PRK13631 cbiO cobalt transport 100.0 1.8E-45 3.9E-50 337.3 24.0 228 11-241 19-266 (320)
88 PRK15112 antimicrobial peptide 100.0 1.7E-45 3.6E-50 330.1 23.3 218 12-241 3-240 (267)
89 PRK11248 tauB taurine transpor 100.0 8.8E-46 1.9E-50 329.7 21.3 204 13-235 1-215 (255)
90 PRK13638 cbiO cobalt transport 100.0 1E-45 2.2E-50 332.1 21.7 215 13-241 1-226 (271)
91 cd03260 ABC_PstB_phosphate_tra 100.0 5.6E-46 1.2E-50 325.3 19.4 208 14-237 1-226 (227)
92 COG1123 ATPase components of v 100.0 1.2E-45 2.6E-50 350.4 23.1 225 10-244 277-523 (539)
93 PRK11144 modC molybdate transp 100.0 1.8E-45 3.9E-50 341.7 23.6 217 13-243 1-221 (352)
94 cd03257 ABC_NikE_OppD_transpor 100.0 2.1E-45 4.5E-50 321.6 22.6 212 13-233 1-228 (228)
95 PRK10070 glycine betaine trans 100.0 1.7E-45 3.6E-50 345.3 23.5 222 12-241 3-255 (400)
96 TIGR02673 FtsE cell division A 100.0 5.4E-46 1.2E-50 322.6 18.6 204 13-228 1-214 (214)
97 PRK11629 lolD lipoprotein tran 100.0 1.5E-45 3.2E-50 324.0 21.6 214 12-234 4-228 (233)
98 PRK13641 cbiO cobalt transport 100.0 1.6E-45 3.5E-50 333.4 22.3 218 13-240 2-234 (287)
99 PRK09473 oppD oligopeptide tra 100.0 3E-45 6.4E-50 337.2 24.4 227 9-242 8-253 (330)
100 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-45 3.7E-50 327.3 22.0 222 14-241 1-237 (252)
101 TIGR01186 proV glycine betaine 100.0 1.1E-45 2.4E-50 342.7 21.3 210 22-242 2-221 (363)
102 cd03263 ABC_subfamily_A The AB 100.0 1.2E-45 2.7E-50 321.6 20.2 209 14-238 1-219 (220)
103 cd03269 ABC_putative_ATPase Th 100.0 1.1E-45 2.4E-50 319.8 19.6 201 14-233 1-210 (210)
104 PRK11701 phnK phosphonate C-P 100.0 3.6E-45 7.8E-50 326.3 23.4 218 12-241 5-242 (258)
105 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-45 5.1E-50 322.0 21.7 211 14-238 1-219 (230)
106 TIGR02769 nickel_nikE nickel i 100.0 2.1E-45 4.5E-50 329.2 21.6 219 13-240 2-240 (265)
107 PRK14268 phosphate ABC transpo 100.0 4.7E-45 1E-49 325.6 23.5 216 11-241 10-243 (258)
108 PRK13635 cbiO cobalt transport 100.0 3.1E-45 6.8E-50 330.2 22.5 215 12-240 4-229 (279)
109 PRK10771 thiQ thiamine transpo 100.0 7.2E-45 1.6E-49 319.5 24.3 210 13-241 1-220 (232)
110 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.7E-45 3.7E-50 330.4 20.5 216 15-241 26-251 (269)
111 PRK14247 phosphate ABC transpo 100.0 3.6E-45 7.7E-50 324.8 22.3 214 12-241 2-235 (250)
112 cd03235 ABC_Metallic_Cations A 100.0 1.9E-45 4.2E-50 318.9 20.1 199 15-232 1-212 (213)
113 PRK14242 phosphate transporter 100.0 2.8E-45 6.1E-50 326.0 21.6 218 10-241 3-238 (253)
114 PRK13633 cobalt transporter AT 100.0 3.2E-45 6.9E-50 330.4 22.2 218 12-241 3-234 (280)
115 COG4152 ABC-type uncharacteriz 100.0 8.3E-46 1.8E-50 316.2 17.2 211 13-243 2-222 (300)
116 PRK10619 histidine/lysine/argi 100.0 5.3E-45 1.2E-49 325.1 23.0 223 12-241 4-242 (257)
117 COG4598 HisP ABC-type histidin 100.0 9.1E-46 2E-50 302.9 16.3 229 11-246 4-247 (256)
118 PRK14267 phosphate ABC transpo 100.0 4.7E-45 1E-49 324.6 22.4 217 11-241 2-238 (253)
119 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.4E-45 9.6E-50 316.3 21.5 200 14-232 1-210 (211)
120 TIGR02323 CP_lyasePhnK phospho 100.0 1E-44 2.2E-49 322.5 24.2 218 12-241 2-239 (253)
121 PRK13639 cbiO cobalt transport 100.0 3.6E-45 7.8E-50 329.3 21.5 214 13-240 1-226 (275)
122 PRK13648 cbiO cobalt transport 100.0 5.6E-45 1.2E-49 327.0 22.4 217 11-241 5-232 (269)
123 PRK14273 phosphate ABC transpo 100.0 7.7E-45 1.7E-49 323.4 23.1 216 11-241 5-239 (254)
124 PRK13640 cbiO cobalt transport 100.0 6.3E-45 1.4E-49 328.8 22.7 217 12-241 4-233 (282)
125 TIGR00972 3a0107s01c2 phosphat 100.0 8.4E-45 1.8E-49 321.9 23.0 214 13-241 1-233 (247)
126 COG4175 ProV ABC-type proline/ 100.0 2.8E-45 6.1E-50 323.1 19.7 224 12-243 3-257 (386)
127 PRK11124 artP arginine transpo 100.0 5.4E-45 1.2E-49 322.2 21.6 217 13-239 2-229 (242)
128 PRK09544 znuC high-affinity zi 100.0 1.4E-44 3E-49 321.2 24.2 203 12-240 3-209 (251)
129 cd03225 ABC_cobalt_CbiO_domain 100.0 2.3E-45 5E-50 317.9 18.5 200 15-228 1-211 (211)
130 cd03264 ABC_drug_resistance_li 100.0 3.4E-45 7.4E-50 317.0 19.6 201 14-233 1-211 (211)
131 PRK13644 cbiO cobalt transport 100.0 6.8E-45 1.5E-49 327.3 22.1 214 13-241 1-225 (274)
132 PRK10584 putative ABC transpor 100.0 8.8E-45 1.9E-49 318.0 22.1 211 12-231 5-226 (228)
133 PRK10908 cell division protein 100.0 5.1E-45 1.1E-49 318.3 20.5 207 13-231 1-217 (222)
134 TIGR02211 LolD_lipo_ex lipopro 100.0 6.2E-45 1.4E-49 317.4 20.7 209 13-230 1-220 (221)
135 PRK13547 hmuV hemin importer A 100.0 1.1E-44 2.4E-49 325.3 23.0 214 13-240 1-244 (272)
136 PRK14248 phosphate ABC transpo 100.0 1.1E-44 2.4E-49 325.0 22.8 220 8-241 16-253 (268)
137 PRK13645 cbiO cobalt transport 100.0 1.2E-44 2.6E-49 328.1 23.1 222 12-241 5-241 (289)
138 PRK13632 cbiO cobalt transport 100.0 8.8E-45 1.9E-49 326.1 21.9 218 10-241 4-232 (271)
139 cd03292 ABC_FtsE_transporter F 100.0 3.2E-45 7E-50 317.6 18.4 204 14-229 1-214 (214)
140 PRK10418 nikD nickel transport 100.0 3.8E-44 8.2E-49 319.1 25.6 215 13-241 4-231 (254)
141 COG4559 ABC-type hemin transpo 100.0 5.7E-45 1.2E-49 305.3 18.8 214 13-242 1-232 (259)
142 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-44 2.4E-49 322.9 21.7 211 14-240 2-226 (256)
143 PRK13649 cbiO cobalt transport 100.0 1E-44 2.2E-49 327.2 21.7 218 13-240 2-234 (280)
144 TIGR03740 galliderm_ABC gallid 100.0 1.4E-44 3E-49 315.8 21.8 205 14-237 1-210 (223)
145 cd03262 ABC_HisP_GlnQ_permease 100.0 4.7E-45 1E-49 316.4 18.7 202 14-229 1-213 (213)
146 PRK14239 phosphate transporter 100.0 1.9E-44 4.1E-49 320.5 22.8 216 12-242 4-238 (252)
147 PRK14235 phosphate transporter 100.0 1.3E-44 2.8E-49 324.3 21.9 217 11-241 17-252 (267)
148 PRK10744 pstB phosphate transp 100.0 2.1E-44 4.6E-49 321.7 23.2 216 11-241 11-245 (260)
149 PRK13642 cbiO cobalt transport 100.0 2E-44 4.3E-49 324.7 22.9 216 13-241 4-230 (277)
150 PRK14269 phosphate ABC transpo 100.0 2.1E-44 4.6E-49 319.2 22.6 212 13-241 2-231 (246)
151 PRK14258 phosphate ABC transpo 100.0 2.4E-44 5.3E-49 321.5 23.2 221 10-243 4-248 (261)
152 PRK10419 nikE nickel transport 100.0 1.3E-44 2.7E-49 324.6 21.3 220 12-240 2-241 (268)
153 PRK14245 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 321.3 21.2 216 12-242 2-236 (250)
154 PRK14274 phosphate ABC transpo 100.0 2.4E-44 5.3E-49 321.2 23.0 218 10-241 9-244 (259)
155 TIGR01978 sufC FeS assembly AT 100.0 1.7E-44 3.6E-49 319.0 21.0 211 14-239 1-233 (243)
156 COG1123 ATPase components of v 100.0 1.3E-44 2.7E-49 343.5 21.3 225 12-243 4-247 (539)
157 TIGR01277 thiQ thiamine ABC tr 100.0 3.4E-44 7.4E-49 311.3 21.6 202 14-234 1-212 (213)
158 TIGR02142 modC_ABC molybdenum 100.0 2.8E-44 6E-49 334.1 22.4 212 18-242 4-223 (354)
159 PRK14259 phosphate ABC transpo 100.0 5.5E-44 1.2E-48 320.6 23.5 217 11-242 11-255 (269)
160 cd03300 ABC_PotA_N PotA is an 100.0 2.8E-44 6.1E-49 315.8 21.2 211 14-241 1-221 (232)
161 PRK14241 phosphate transporter 100.0 4.3E-44 9.4E-49 319.4 22.7 215 13-241 4-243 (258)
162 COG4608 AppF ABC-type oligopep 100.0 2.3E-44 5E-49 314.4 20.3 192 11-243 2-202 (268)
163 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-44 5.9E-49 349.3 23.0 215 11-240 9-229 (510)
164 cd03214 ABC_Iron-Siderophores_ 100.0 1.8E-44 3.9E-49 305.2 18.8 177 15-232 1-179 (180)
165 PRK14270 phosphate ABC transpo 100.0 6.6E-44 1.4E-48 316.9 22.8 216 11-241 2-236 (251)
166 cd03252 ABCC_Hemolysin The ABC 100.0 6.8E-44 1.5E-48 314.1 22.3 212 14-241 1-226 (237)
167 PRK14256 phosphate ABC transpo 100.0 8.8E-44 1.9E-48 316.3 23.2 216 13-242 4-238 (252)
168 PRK15056 manganese/iron transp 100.0 5.4E-44 1.2E-48 321.2 21.9 211 13-239 6-229 (272)
169 PRK10938 putative molybdenum t 100.0 3.3E-44 7.1E-49 347.3 21.8 220 13-240 3-224 (490)
170 PRK09700 D-allose transporter 100.0 3E-44 6.4E-49 349.2 21.6 213 12-239 4-233 (510)
171 PRK10261 glutathione transport 100.0 5E-44 1.1E-48 354.6 23.5 221 12-241 312-554 (623)
172 PRK14253 phosphate ABC transpo 100.0 9E-44 2E-48 315.6 22.8 213 12-240 2-233 (249)
173 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.7E-44 1.7E-48 314.0 22.1 212 14-241 1-227 (238)
174 PRK14249 phosphate ABC transpo 100.0 1E-43 2.2E-48 315.7 23.0 217 12-242 3-237 (251)
175 cd03297 ABC_ModC_molybdenum_tr 100.0 5.2E-44 1.1E-48 310.3 20.4 205 14-233 2-214 (214)
176 PRK14251 phosphate ABC transpo 100.0 6E-44 1.3E-48 317.1 21.1 215 12-241 3-236 (251)
177 PRK14262 phosphate ABC transpo 100.0 8.2E-44 1.8E-48 316.1 21.7 215 12-241 2-235 (250)
178 PRK14265 phosphate ABC transpo 100.0 1.5E-43 3.1E-48 318.6 23.6 220 9-242 16-260 (274)
179 PRK10247 putative ABC transpor 100.0 8.9E-44 1.9E-48 311.2 21.6 207 11-234 5-221 (225)
180 PRK13549 xylose transporter AT 100.0 4E-44 8.7E-49 347.9 21.2 214 12-239 4-231 (506)
181 PRK14237 phosphate transporter 100.0 1.5E-43 3.3E-48 317.4 23.3 216 11-241 18-252 (267)
182 TIGR03415 ABC_choXWV_ATP choli 100.0 4.2E-44 9.1E-49 333.8 20.3 212 19-241 30-255 (382)
183 PRK10762 D-ribose transporter 100.0 5.3E-44 1.1E-48 346.7 21.7 212 12-238 3-228 (501)
184 PRK14240 phosphate transporter 100.0 1.5E-43 3.2E-48 314.4 22.8 214 13-241 3-235 (250)
185 cd03254 ABCC_Glucan_exporter_l 100.0 1E-43 2.2E-48 311.4 21.4 210 13-240 2-226 (229)
186 TIGR00968 3a0106s01 sulfate AB 100.0 1E-43 2.3E-48 313.2 21.3 210 14-240 1-220 (237)
187 KOG2355 Predicted ABC-type tra 100.0 1.4E-43 3E-48 295.6 20.6 279 11-294 11-289 (291)
188 cd03245 ABCC_bacteriocin_expor 100.0 1E-43 2.2E-48 309.5 20.7 202 14-232 3-219 (220)
189 PRK14254 phosphate ABC transpo 100.0 1.6E-43 3.6E-48 319.9 22.6 216 11-241 37-270 (285)
190 PRK14243 phosphate transporter 100.0 2.1E-43 4.5E-48 316.0 23.0 217 12-242 9-250 (264)
191 PRK14271 phosphate ABC transpo 100.0 2E-43 4.3E-48 318.0 22.9 216 11-242 19-253 (276)
192 cd03299 ABC_ModC_like Archeal 100.0 1.5E-43 3.3E-48 311.7 21.6 210 14-241 1-220 (235)
193 PRK14236 phosphate transporter 100.0 2.1E-43 4.6E-48 317.3 22.8 217 10-241 22-257 (272)
194 PRK14255 phosphate ABC transpo 100.0 2.2E-43 4.8E-48 313.6 22.3 217 10-241 2-237 (252)
195 PRK15134 microcin C ABC transp 100.0 1.2E-43 2.6E-48 346.4 22.5 223 12-241 4-247 (529)
196 cd03251 ABCC_MsbA MsbA is an e 100.0 2.3E-43 5.1E-48 310.0 22.1 211 14-241 1-226 (234)
197 PRK14275 phosphate ABC transpo 100.0 2.1E-43 4.5E-48 319.5 22.2 216 11-241 37-271 (286)
198 PRK14272 phosphate ABC transpo 100.0 1.7E-43 3.6E-48 314.4 21.1 215 13-241 4-237 (252)
199 PRK14261 phosphate ABC transpo 100.0 2.9E-43 6.2E-48 313.2 22.5 216 11-241 4-238 (253)
200 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-43 7E-48 312.5 22.8 213 10-237 4-238 (252)
201 PRK14238 phosphate transporter 100.0 2.9E-43 6.3E-48 316.2 22.7 217 11-241 22-256 (271)
202 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.9E-44 1.7E-48 311.4 18.4 193 14-233 23-224 (224)
203 PRK14260 phosphate ABC transpo 100.0 2.8E-43 6.2E-48 314.3 22.2 216 11-241 5-244 (259)
204 COG4181 Predicted ABC-type tra 100.0 1.2E-43 2.5E-48 288.4 17.7 211 13-232 6-227 (228)
205 PRK10261 glutathione transport 100.0 1.1E-43 2.5E-48 352.0 21.2 231 10-241 9-259 (623)
206 cd03267 ABC_NatA_like Similar 100.0 1.7E-43 3.7E-48 311.6 19.7 192 29-233 34-236 (236)
207 PRK14244 phosphate ABC transpo 100.0 2.3E-43 4.9E-48 313.5 20.1 214 14-241 6-238 (251)
208 PRK14246 phosphate ABC transpo 100.0 8.8E-43 1.9E-47 310.8 23.6 221 10-241 7-242 (257)
209 PRK15134 microcin C ABC transp 100.0 2.5E-43 5.5E-48 344.1 21.7 221 11-241 273-516 (529)
210 PRK13549 xylose transporter AT 100.0 1.7E-43 3.7E-48 343.5 19.4 219 12-238 258-492 (506)
211 COG2274 SunT ABC-type bacterio 100.0 3.1E-43 6.7E-48 348.7 21.5 214 13-242 471-698 (709)
212 cd03253 ABCC_ATM1_transporter 100.0 1E-42 2.2E-47 306.4 22.3 209 14-240 1-224 (236)
213 COG4586 ABC-type uncharacteriz 100.0 1.2E-43 2.6E-48 307.3 16.0 225 13-242 3-248 (325)
214 cd03216 ABC_Carb_Monos_I This 100.0 5.1E-43 1.1E-47 291.8 19.2 162 14-231 1-162 (163)
215 TIGR03269 met_CoM_red_A2 methy 100.0 6.8E-43 1.5E-47 340.4 23.2 224 11-240 277-517 (520)
216 TIGR02770 nickel_nikD nickel i 100.0 7.5E-43 1.6E-47 306.3 21.1 201 31-241 1-216 (230)
217 COG4987 CydC ABC-type transpor 100.0 2.9E-43 6.2E-48 329.1 19.4 213 13-241 336-562 (573)
218 cd03244 ABCC_MRP_domain2 Domai 100.0 8.7E-43 1.9E-47 303.9 20.8 204 14-234 3-220 (221)
219 cd03229 ABC_Class3 This class 100.0 6.4E-43 1.4E-47 295.2 19.3 177 14-228 1-178 (178)
220 PRK13538 cytochrome c biogenes 100.0 4E-43 8.7E-48 302.7 18.4 195 13-224 1-202 (204)
221 cd03230 ABC_DR_subfamily_A Thi 100.0 6.6E-43 1.4E-47 293.8 19.2 172 14-229 1-173 (173)
222 PRK13543 cytochrome c biogenes 100.0 1.1E-42 2.4E-47 302.1 21.2 197 11-226 9-212 (214)
223 PRK11288 araG L-arabinose tran 100.0 7.2E-43 1.6E-47 338.8 22.3 208 12-234 3-223 (501)
224 TIGR01184 ntrCD nitrate transp 100.0 3.5E-43 7.6E-48 308.5 18.2 191 32-238 1-202 (230)
225 PRK14257 phosphate ABC transpo 100.0 2.3E-42 5E-47 317.8 24.4 219 12-243 79-316 (329)
226 PRK09580 sufC cysteine desulfu 100.0 2.2E-42 4.7E-47 306.4 23.4 211 13-238 1-233 (248)
227 cd03289 ABCC_CFTR2 The CFTR su 100.0 8.9E-43 1.9E-47 313.0 21.1 211 13-241 2-226 (275)
228 PRK14263 phosphate ABC transpo 100.0 1.6E-42 3.5E-47 309.8 22.2 218 9-241 4-246 (261)
229 KOG0058 Peptide exporter, ABC 100.0 4.2E-43 9.1E-48 338.1 19.6 216 12-242 464-693 (716)
230 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-42 2.9E-47 303.8 20.9 204 10-229 8-226 (226)
231 TIGR03269 met_CoM_red_A2 methy 100.0 8.8E-43 1.9E-47 339.6 21.9 223 14-240 1-258 (520)
232 cd03234 ABCG_White The White s 100.0 1.5E-42 3.2E-47 303.7 20.7 205 13-233 3-226 (226)
233 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.7E-42 3.7E-47 299.3 20.8 201 12-234 5-206 (207)
234 COG4988 CydD ABC-type transpor 100.0 2E-42 4.3E-47 327.5 22.7 214 13-243 320-546 (559)
235 TIGR02982 heterocyst_DevA ABC 100.0 1.1E-42 2.3E-47 303.3 19.4 206 14-229 2-219 (220)
236 PRK10982 galactose/methyl gala 100.0 1.1E-42 2.4E-47 336.7 21.5 208 16-238 1-221 (491)
237 cd03233 ABC_PDR_domain1 The pl 100.0 1.8E-42 3.8E-47 298.3 20.4 193 13-233 3-202 (202)
238 PRK14264 phosphate ABC transpo 100.0 2.6E-42 5.6E-47 314.9 22.6 216 11-241 43-290 (305)
239 cd03231 ABC_CcmA_heme_exporter 100.0 1.7E-42 3.6E-47 298.2 20.1 194 14-224 1-198 (201)
240 TIGR02633 xylG D-xylose ABC tr 100.0 1E-42 2.3E-47 337.6 21.2 212 13-238 1-228 (500)
241 PRK14252 phosphate ABC transpo 100.0 5.3E-42 1.2E-46 307.1 23.4 218 11-241 14-250 (265)
242 PRK14266 phosphate ABC transpo 100.0 5.7E-42 1.2E-46 304.2 22.5 215 13-241 3-235 (250)
243 PRK13545 tagH teichoic acids e 100.0 4.3E-42 9.3E-47 327.3 23.1 206 11-241 19-233 (549)
244 PRK03695 vitamin B12-transport 100.0 4.2E-42 9.2E-47 304.9 21.4 205 15-240 2-222 (248)
245 cd03217 ABC_FeS_Assembly ABC-t 100.0 3E-42 6.5E-47 296.4 19.9 186 14-236 1-190 (200)
246 cd03247 ABCC_cytochrome_bd The 100.0 2.2E-42 4.8E-47 291.9 18.6 177 14-233 1-178 (178)
247 cd03246 ABCC_Protease_Secretio 100.0 2.6E-42 5.6E-47 290.2 18.8 172 14-229 1-173 (173)
248 PRK11174 cysteine/glutathione 100.0 4.1E-42 8.9E-47 339.5 23.3 211 13-241 349-573 (588)
249 COG1119 ModF ABC-type molybden 100.0 8.7E-43 1.9E-47 298.9 15.9 210 11-234 29-256 (257)
250 PRK09700 D-allose transporter 100.0 2.1E-42 4.6E-47 336.2 20.3 210 12-235 264-493 (510)
251 COG4525 TauB ABC-type taurine 100.0 1.8E-42 4E-47 286.9 16.7 207 12-236 2-220 (259)
252 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.2E-42 1.6E-46 343.2 24.2 210 13-241 451-674 (686)
253 TIGR03608 L_ocin_972_ABC putat 100.0 2.2E-42 4.9E-47 298.1 17.6 196 16-224 1-206 (206)
254 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-42 4.1E-47 335.8 19.1 217 12-236 256-488 (500)
255 cd03215 ABC_Carb_Monos_II This 100.0 4.9E-42 1.1E-46 290.8 19.1 176 12-229 3-182 (182)
256 cd03213 ABCG_EPDR ABCG transpo 100.0 6.1E-42 1.3E-46 293.2 19.2 184 13-232 3-193 (194)
257 KOG0055 Multidrug/pheromone ex 100.0 8.7E-42 1.9E-46 345.2 23.3 217 12-243 349-579 (1228)
258 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.5E-42 1.4E-46 344.8 22.4 211 13-241 477-701 (710)
259 PRK15064 ABC transporter ATP-b 100.0 1.2E-41 2.7E-46 332.3 23.3 203 12-241 318-526 (530)
260 PRK13539 cytochrome c biogenes 100.0 1E-41 2.2E-46 294.5 20.2 193 13-226 2-200 (207)
261 cd03288 ABCC_SUR2 The SUR doma 100.0 2E-41 4.3E-46 302.1 22.7 213 12-241 18-244 (257)
262 PRK13546 teichoic acids export 100.0 2E-41 4.4E-46 302.9 22.7 204 13-241 4-233 (264)
263 PRK15064 ABC transporter ATP-b 100.0 1.1E-41 2.4E-46 332.6 22.5 199 13-240 1-242 (530)
264 COG1129 MglA ABC-type sugar tr 100.0 9.9E-42 2.1E-46 321.7 21.3 212 11-238 6-233 (500)
265 PRK11176 lipid transporter ATP 100.0 1E-41 2.2E-46 336.4 22.4 213 13-241 341-568 (582)
266 cd03250 ABCC_MRP_domain1 Domai 100.0 2.1E-41 4.6E-46 291.8 21.2 187 14-228 1-204 (204)
267 PRK11160 cysteine/glutathione 100.0 1.5E-41 3.2E-46 334.5 22.5 215 12-242 337-564 (574)
268 PRK11819 putative ABC transpor 100.0 1.9E-41 4.2E-46 332.4 23.1 202 11-240 4-250 (556)
269 PRK10790 putative multidrug tr 100.0 2E-41 4.3E-46 334.9 23.3 211 13-241 340-564 (592)
270 COG4619 ABC-type uncharacteriz 100.0 2.5E-42 5.4E-47 279.7 13.7 203 13-230 3-213 (223)
271 TIGR00958 3a01208 Conjugate Tr 100.0 1.6E-41 3.5E-46 341.5 22.5 212 13-241 478-703 (711)
272 TIGR03375 type_I_sec_LssB type 100.0 2.5E-41 5.5E-46 339.7 23.5 213 13-241 463-689 (694)
273 PRK13540 cytochrome c biogenes 100.0 1.7E-41 3.7E-46 291.7 18.8 192 13-222 1-197 (200)
274 TIGR02324 CP_lyasePhnL phospho 100.0 2.1E-41 4.6E-46 295.8 19.7 204 13-225 1-223 (224)
275 cd03232 ABC_PDR_domain2 The pl 100.0 1.7E-41 3.6E-46 290.0 18.6 185 13-233 3-192 (192)
276 PRK13657 cyclic beta-1,2-gluca 100.0 4.7E-41 1E-45 332.0 24.1 212 13-241 334-559 (588)
277 cd03228 ABCC_MRP_Like The MRP 100.0 1.6E-41 3.6E-46 284.8 17.5 170 14-228 1-171 (171)
278 PRK10938 putative molybdenum t 100.0 1.9E-41 4.1E-46 328.1 19.9 210 11-233 258-485 (490)
279 COG4161 ArtP ABC-type arginine 100.0 2.3E-41 5.1E-46 272.7 16.9 217 13-239 2-229 (242)
280 COG1132 MdlB ABC-type multidru 100.0 5.2E-41 1.1E-45 330.3 22.2 212 13-241 328-553 (567)
281 TIGR01193 bacteriocin_ABC ABC- 100.0 4.3E-41 9.4E-46 338.7 22.1 211 13-241 473-698 (708)
282 COG4148 ModC ABC-type molybdat 100.0 1.1E-41 2.4E-46 295.8 15.3 211 19-242 6-220 (352)
283 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-40 2.6E-45 290.0 21.9 200 15-228 2-218 (218)
284 TIGR01189 ccmA heme ABC export 100.0 4E-41 8.7E-46 288.8 18.6 191 14-223 1-197 (198)
285 TIGR01257 rim_protein retinal- 100.0 4E-41 8.6E-46 359.8 22.5 216 12-242 1936-2161(2272)
286 KOG0057 Mitochondrial Fe/S clu 100.0 4E-41 8.7E-46 315.0 19.5 210 13-240 351-574 (591)
287 PRK11288 araG L-arabinose tran 100.0 4.7E-41 1E-45 326.1 20.5 211 13-239 257-484 (501)
288 PRK10982 galactose/methyl gala 100.0 4.1E-41 9E-46 325.8 19.9 217 12-236 249-476 (491)
289 PRK11147 ABC transporter ATPas 100.0 2.4E-40 5.1E-45 329.1 25.8 221 12-240 2-243 (635)
290 PRK10636 putative ABC transpor 100.0 9.3E-41 2E-45 331.7 22.7 202 11-239 310-516 (638)
291 PRK10636 putative ABC transpor 100.0 1.1E-40 2.3E-45 331.3 23.0 209 13-240 1-236 (638)
292 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-40 2.4E-45 278.5 19.4 164 14-228 1-164 (166)
293 COG4172 ABC-type uncharacteriz 100.0 1.2E-40 2.6E-45 301.9 20.8 224 11-244 274-520 (534)
294 PRK15439 autoinducer 2 ABC tra 100.0 4.7E-41 1E-45 326.6 19.1 212 11-239 266-491 (510)
295 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-40 3.7E-45 325.5 23.1 201 12-240 3-248 (552)
296 TIGR01192 chvA glucan exporter 100.0 2.1E-40 4.6E-45 326.8 23.4 212 13-241 334-559 (585)
297 COG0488 Uup ATPase components 100.0 2.2E-40 4.8E-45 319.0 22.8 211 11-240 1-240 (530)
298 TIGR01842 type_I_sec_PrtD type 100.0 2.7E-40 5.8E-45 323.8 23.6 213 13-240 316-542 (544)
299 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.9E-40 2.2E-44 294.3 25.1 197 11-240 37-247 (282)
300 PRK10762 D-ribose transporter 100.0 7.9E-41 1.7E-45 324.5 19.3 210 12-238 256-482 (501)
301 TIGR02203 MsbA_lipidA lipid A 100.0 1.7E-40 3.7E-45 326.9 21.7 213 13-241 330-557 (571)
302 COG3845 ABC-type uncharacteriz 100.0 1.3E-40 2.8E-45 308.9 19.4 208 12-234 3-223 (501)
303 TIGR01846 type_I_sec_HlyB type 100.0 2.6E-40 5.7E-45 332.3 22.9 214 13-242 455-682 (694)
304 TIGR02204 MsbA_rel ABC transpo 100.0 2.9E-40 6.2E-45 325.6 22.7 214 13-241 337-564 (576)
305 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.5E-40 7.6E-45 292.1 21.0 192 22-238 2-205 (246)
306 PRK10789 putative multidrug tr 100.0 3.4E-40 7.5E-45 324.5 22.8 213 13-241 313-539 (569)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.6E-40 7.8E-45 269.2 17.9 144 14-228 1-144 (144)
308 TIGR03771 anch_rpt_ABC anchore 100.0 4.9E-40 1.1E-44 287.2 19.7 188 37-240 1-201 (223)
309 PRK11819 putative ABC transpor 100.0 1.3E-39 2.8E-44 319.5 24.9 202 12-241 323-534 (556)
310 TIGR01257 rim_protein retinal- 100.0 3.1E-40 6.8E-45 353.0 22.2 214 12-241 927-1150(2272)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.2E-40 2E-44 320.4 23.2 202 11-240 320-531 (552)
312 PRK15177 Vi polysaccharide exp 100.0 1.7E-39 3.7E-44 281.9 21.7 185 30-240 1-192 (213)
313 PRK11147 ABC transporter ATPas 100.0 1.3E-39 2.8E-44 323.8 22.9 200 12-239 318-527 (635)
314 PRK13409 putative ATPase RIL; 100.0 9.7E-40 2.1E-44 320.9 21.6 195 11-234 338-536 (590)
315 PLN03073 ABC transporter F fam 100.0 1.9E-39 4.1E-44 324.4 23.9 202 12-238 507-712 (718)
316 COG4172 ABC-type uncharacteriz 100.0 4.4E-40 9.5E-45 298.2 17.4 226 11-243 4-250 (534)
317 PTZ00265 multidrug resistance 100.0 9E-40 1.9E-44 347.3 22.5 216 13-240 1165-1452(1466)
318 PRK13541 cytochrome c biogenes 100.0 1.2E-39 2.7E-44 279.0 18.4 187 13-221 1-192 (195)
319 cd03222 ABC_RNaseL_inhibitor T 100.0 1.1E-39 2.3E-44 274.5 16.9 154 17-236 4-159 (177)
320 PRK10522 multidrug transporter 100.0 2E-39 4.2E-44 317.9 20.9 201 13-232 322-530 (547)
321 TIGR01166 cbiO cobalt transpor 100.0 9.1E-40 2E-44 278.6 15.6 173 29-213 5-189 (190)
322 PLN03211 ABC transporter G-25; 100.0 1.2E-39 2.7E-44 323.8 18.7 207 15-240 70-296 (659)
323 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.6E-39 5.7E-44 287.7 17.7 201 17-232 4-219 (255)
324 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.2E-39 1.1E-43 315.2 21.3 204 13-232 337-551 (555)
325 COG4674 Uncharacterized ABC-ty 100.0 2E-39 4.3E-44 268.8 14.2 216 12-243 4-238 (249)
326 PLN03232 ABC transporter C fam 100.0 9.5E-39 2.1E-43 341.5 22.8 213 13-242 1234-1460(1495)
327 KOG0055 Multidrug/pheromone ex 100.0 8.6E-39 1.9E-43 323.6 20.1 214 13-241 987-1214(1228)
328 PLN03130 ABC transporter C fam 100.0 1.7E-38 3.7E-43 340.3 23.4 212 13-241 1237-1462(1622)
329 COG4107 PhnK ABC-type phosphon 100.0 2E-38 4.2E-43 258.7 18.2 222 11-243 4-244 (258)
330 PTZ00265 multidrug resistance 100.0 1.5E-38 3.2E-43 338.0 22.7 202 13-227 382-655 (1466)
331 TIGR01187 potA spermidine/putr 100.0 9.8E-39 2.1E-43 293.7 18.2 182 47-242 1-192 (325)
332 PRK10535 macrolide transporter 100.0 2.2E-38 4.8E-43 315.4 22.0 218 12-239 3-231 (648)
333 TIGR02857 CydD thiol reductant 100.0 1.9E-38 4.1E-43 309.8 20.6 196 13-224 320-529 (529)
334 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.4E-38 5.1E-43 261.9 17.7 156 16-228 2-157 (157)
335 COG4167 SapF ABC-type antimicr 100.0 2E-38 4.4E-43 260.5 16.5 238 11-257 2-256 (267)
336 TIGR02868 CydC thiol reductant 100.0 1.3E-38 2.9E-43 310.9 18.4 182 13-211 334-529 (529)
337 TIGR00957 MRP_assoc_pro multi 100.0 6.1E-38 1.3E-42 335.7 23.1 212 13-241 1284-1509(1522)
338 PTZ00243 ABC transporter; Prov 100.0 7.2E-38 1.6E-42 334.9 23.3 212 13-241 1308-1534(1560)
339 cd03238 ABC_UvrA The excision 100.0 1E-37 2.2E-42 262.3 18.6 157 29-232 8-169 (176)
340 PLN03073 ABC transporter F fam 100.0 5.5E-38 1.2E-42 313.9 19.3 222 10-240 174-431 (718)
341 COG1134 TagH ABC-type polysacc 100.0 5.3E-37 1.1E-41 263.5 19.3 207 12-242 2-238 (249)
342 COG0488 Uup ATPase components 100.0 5.5E-37 1.2E-41 295.4 21.0 202 11-240 319-525 (530)
343 COG4618 ArpD ABC-type protease 100.0 9.3E-37 2E-41 283.4 21.5 216 11-241 332-561 (580)
344 PRK13409 putative ATPase RIL; 100.0 2.1E-37 4.6E-42 304.4 17.0 196 18-227 78-287 (590)
345 COG1101 PhnK ABC-type uncharac 100.0 3.8E-37 8.2E-42 258.8 16.0 210 13-234 1-232 (263)
346 TIGR01271 CFTR_protein cystic 100.0 7.5E-37 1.6E-41 326.6 22.4 210 13-240 1217-1440(1490)
347 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-36 3.5E-41 302.4 21.8 185 12-226 450-653 (659)
348 TIGR00955 3a01204 The Eye Pigm 100.0 1.7E-36 3.6E-41 300.5 19.2 198 28-240 37-256 (617)
349 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-36 3.6E-41 321.8 20.5 207 13-235 759-988 (1394)
350 KOG0056 Heavy metal exporter H 100.0 7.8E-37 1.7E-41 282.2 15.0 212 13-241 537-762 (790)
351 COG0396 sufC Cysteine desulfur 100.0 1E-35 2.3E-40 252.7 20.2 214 12-240 2-233 (251)
352 PLN03232 ABC transporter C fam 100.0 1E-35 2.2E-40 318.2 24.3 202 13-241 614-829 (1495)
353 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-35 3.1E-40 317.5 23.7 201 13-240 636-850 (1522)
354 PLN03130 ABC transporter C fam 100.0 2.1E-35 4.4E-40 316.6 23.7 201 13-241 614-829 (1622)
355 PLN03140 ABC transporter G fam 100.0 2.6E-35 5.7E-40 312.3 21.7 208 13-235 867-1105(1470)
356 cd03270 ABC_UvrA_I The excisio 100.0 4.2E-35 9E-40 256.6 18.6 98 134-233 118-226 (226)
357 COG4133 CcmA ABC-type transpor 100.0 1.6E-35 3.5E-40 244.3 14.3 186 13-215 2-194 (209)
358 TIGR00956 3a01205 Pleiotropic 100.0 8E-35 1.7E-39 309.0 19.0 200 29-240 74-300 (1394)
359 TIGR01271 CFTR_protein cystic 100.0 2.5E-34 5.5E-39 307.2 20.9 184 29-240 439-636 (1490)
360 COG5265 ATM1 ABC-type transpor 100.0 1.1E-34 2.3E-39 264.5 15.0 213 13-242 262-488 (497)
361 COG4136 ABC-type uncharacteriz 100.0 1.2E-34 2.7E-39 231.1 13.2 195 13-224 2-207 (213)
362 KOG0059 Lipid exporter ABCA1 a 100.0 3.1E-34 6.7E-39 293.5 19.4 216 12-241 563-788 (885)
363 PLN03140 ABC transporter G fam 100.0 1.8E-34 3.9E-39 306.0 16.7 199 29-240 178-427 (1470)
364 PTZ00243 ABC transporter; Prov 100.0 2.6E-33 5.7E-38 300.0 22.8 185 29-241 673-871 (1560)
365 COG4778 PhnL ABC-type phosphon 100.0 5.3E-34 1.1E-38 231.8 12.3 209 13-226 4-227 (235)
366 KOG0061 Transporter, ABC super 100.0 5.7E-33 1.2E-37 273.7 20.3 213 13-240 25-260 (613)
367 cd03271 ABC_UvrA_II The excisi 100.0 2.5E-32 5.5E-37 242.7 17.8 102 132-235 148-261 (261)
368 KOG0927 Predicted transporter 100.0 1.3E-32 2.8E-37 257.2 13.6 203 11-239 387-595 (614)
369 KOG0054 Multidrug resistance-a 100.0 3.2E-31 6.8E-36 274.0 21.9 204 11-241 516-732 (1381)
370 KOG0054 Multidrug resistance-a 100.0 2.9E-31 6.3E-36 274.3 18.5 214 13-243 1138-1365(1381)
371 COG4138 BtuD ABC-type cobalami 100.0 2.4E-32 5.2E-37 223.2 7.5 209 13-242 3-223 (248)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 2.7E-31 5.9E-36 227.7 13.0 163 33-226 14-190 (197)
373 KOG0927 Predicted transporter 100.0 4.1E-31 8.9E-36 247.2 14.9 217 12-240 74-309 (614)
374 KOG0062 ATPase component of AB 100.0 1.6E-31 3.6E-36 248.6 11.9 198 12-240 79-285 (582)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.3E-30 2.8E-35 226.3 15.5 191 13-229 5-211 (213)
376 COG1129 MglA ABC-type sugar tr 100.0 9.9E-30 2.1E-34 240.4 17.2 217 11-237 261-487 (500)
377 PF00005 ABC_tran: ABC transpo 100.0 3E-30 6.6E-35 208.1 10.5 130 32-179 1-137 (137)
378 cd03272 ABC_SMC3_euk Eukaryoti 100.0 9.1E-30 2E-34 224.9 14.4 79 144-225 152-234 (243)
379 COG4615 PvdE ABC-type sideroph 100.0 1.8E-29 3.8E-34 228.7 13.9 200 13-233 322-530 (546)
380 COG4170 SapD ABC-type antimicr 100.0 1.5E-29 3.4E-34 212.4 11.9 234 11-251 1-262 (330)
381 cd03274 ABC_SMC4_euk Eukaryoti 100.0 5.7E-30 1.2E-34 221.9 8.0 187 13-226 5-204 (212)
382 KOG0066 eIF2-interacting prote 100.0 1.3E-28 2.9E-33 225.5 14.0 202 11-238 584-789 (807)
383 PRK00349 uvrA excinuclease ABC 100.0 4.3E-27 9.3E-32 239.6 24.1 108 134-243 811-930 (943)
384 cd03273 ABC_SMC2_euk Eukaryoti 100.0 3E-28 6.6E-33 216.5 13.5 180 42-225 25-242 (251)
385 COG1245 Predicted ATPase, RNas 100.0 7.8E-28 1.7E-32 221.4 15.1 163 38-225 363-530 (591)
386 KOG0062 ATPase component of AB 100.0 6.4E-28 1.4E-32 224.7 14.1 195 11-231 360-559 (582)
387 PRK00635 excinuclease ABC subu 100.0 3.8E-27 8.2E-32 249.4 21.2 104 135-240 791-906 (1809)
388 cd03240 ABC_Rad50 The catalyti 100.0 9.5E-28 2.1E-32 206.9 13.8 81 145-226 110-197 (204)
389 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1E-27 2.2E-32 212.6 14.1 78 147-226 152-233 (247)
390 TIGR00630 uvra excinuclease AB 99.9 1.6E-26 3.4E-31 235.0 21.6 103 134-238 809-923 (924)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.4E-27 7.3E-32 202.5 13.7 174 32-228 12-192 (198)
392 COG4178 ABC-type uncharacteriz 99.9 1.8E-26 4E-31 222.2 18.8 187 11-225 390-587 (604)
393 cd03280 ABC_MutS2 MutS2 homolo 99.9 7.2E-26 1.6E-30 194.6 10.7 146 32-233 17-172 (200)
394 COG3845 ABC-type uncharacteriz 99.9 7.2E-25 1.6E-29 204.2 17.9 216 11-237 255-489 (501)
395 KOG0065 Pleiotropic drug resis 99.9 1.4E-25 3.1E-30 228.1 11.1 195 28-237 803-1018(1391)
396 KOG0066 eIF2-interacting prote 99.9 2E-25 4.2E-30 204.7 7.1 210 13-236 264-495 (807)
397 COG1245 Predicted ATPase, RNas 99.9 1.7E-24 3.7E-29 199.4 11.8 198 18-225 79-287 (591)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 3E-24 6.5E-29 186.2 11.5 84 145-228 121-211 (213)
399 KOG0060 Long-chain acyl-CoA tr 99.9 1.7E-22 3.6E-27 190.9 18.5 190 12-226 432-641 (659)
400 cd03239 ABC_SMC_head The struc 99.9 1.6E-22 3.4E-27 170.7 14.9 74 151-226 95-172 (178)
401 COG2401 ABC-type ATPase fused 99.9 1.3E-22 2.9E-27 185.2 14.7 181 29-231 396-589 (593)
402 cd03285 ABC_MSH2_euk MutS2 hom 99.9 2E-22 4.3E-27 175.8 12.1 154 29-234 17-175 (222)
403 cd03227 ABC_Class2 ABC-type Cl 99.9 3.5E-22 7.6E-27 166.1 12.7 75 150-226 77-155 (162)
404 cd03241 ABC_RecN RecN ATPase i 99.9 7.5E-22 1.6E-26 177.8 12.9 77 149-228 169-249 (276)
405 cd03243 ABC_MutS_homologs The 99.9 1E-21 2.2E-26 169.0 12.7 155 33-235 20-174 (202)
406 PRK00635 excinuclease ABC subu 99.9 1.2E-20 2.6E-25 200.4 19.7 106 136-243 1682-1799(1809)
407 KOG0064 Peroxisomal long-chain 99.9 4E-21 8.7E-26 179.8 13.2 190 13-224 481-681 (728)
408 cd03283 ABC_MutS-like MutS-lik 99.8 2.7E-20 5.8E-25 159.8 13.0 57 167-224 104-163 (199)
409 COG0178 UvrA Excinuclease ATPa 99.8 9E-20 2E-24 178.2 17.8 97 144-242 816-921 (935)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.8 3E-20 6.6E-25 159.9 12.9 141 29-219 16-159 (204)
411 TIGR00630 uvra excinuclease AB 99.8 4.7E-20 1E-24 188.0 12.9 95 144-240 481-583 (924)
412 PRK00349 uvrA excinuclease ABC 99.8 5.3E-20 1.2E-24 187.9 12.5 102 137-240 473-585 (943)
413 KOG0065 Pleiotropic drug resis 99.8 9.6E-20 2.1E-24 186.0 13.9 200 29-241 128-352 (1391)
414 KOG0063 RNAse L inhibitor, ABC 99.8 7.8E-19 1.7E-23 161.1 12.1 180 21-226 343-532 (592)
415 cd03242 ABC_RecF RecF is a rec 99.8 2.2E-18 4.7E-23 154.8 12.2 77 148-229 181-269 (270)
416 cd03284 ABC_MutS1 MutS1 homolo 99.8 1.1E-18 2.3E-23 151.7 8.8 153 29-238 18-179 (216)
417 smart00534 MUTSac ATPase domai 99.8 1.1E-18 2.3E-23 148.3 6.5 82 145-228 56-138 (185)
418 cd03281 ABC_MSH5_euk MutS5 hom 99.7 1.1E-15 2.4E-20 132.6 14.7 66 153-218 93-161 (213)
419 PF02463 SMC_N: RecF/RecN/SMC 99.7 6.6E-16 1.4E-20 134.3 13.3 74 149-225 135-212 (220)
420 TIGR01069 mutS2 MutS2 family p 99.7 8.1E-17 1.8E-21 162.6 8.3 134 34-215 313-449 (771)
421 TIGR02858 spore_III_AA stage I 99.6 1.4E-15 3E-20 136.0 12.3 143 43-238 112-267 (270)
422 cd03287 ABC_MSH3_euk MutS3 hom 99.6 4.8E-15 1E-19 129.1 13.3 137 29-215 18-158 (222)
423 PRK00409 recombination and DNA 99.6 2.9E-15 6.4E-20 151.6 12.6 78 146-224 386-463 (782)
424 KOG0063 RNAse L inhibitor, ABC 99.6 1.2E-15 2.7E-20 140.2 7.6 92 133-225 194-287 (592)
425 TIGR00618 sbcc exonuclease Sbc 99.6 8.7E-15 1.9E-19 153.5 10.8 82 145-227 945-1036(1042)
426 cd03286 ABC_MSH6_euk MutS6 hom 99.6 6.8E-14 1.5E-18 121.5 14.4 141 29-218 17-160 (218)
427 TIGR00634 recN DNA repair prot 99.6 1.1E-14 2.5E-19 143.3 9.7 76 150-228 440-519 (563)
428 PHA02562 46 endonuclease subun 99.5 1.9E-14 4.2E-19 141.8 7.9 79 147-229 465-555 (562)
429 PRK08533 flagellar accessory p 99.5 1.4E-13 3.1E-18 120.7 12.3 74 150-225 95-184 (230)
430 PRK10869 recombination and rep 99.5 6.8E-14 1.5E-18 137.1 10.2 75 150-227 430-508 (553)
431 PRK07721 fliI flagellum-specif 99.5 4.7E-13 1E-17 127.1 15.2 186 29-237 146-340 (438)
432 PRK13695 putative NTPase; Prov 99.5 1.2E-13 2.7E-18 115.9 9.5 81 146-232 74-156 (174)
433 cd01128 rho_factor Transcripti 99.5 7.5E-14 1.6E-18 123.5 7.3 76 149-230 128-212 (249)
434 PRK03918 chromosome segregatio 99.5 1.4E-13 3.1E-18 142.3 10.1 80 145-226 783-868 (880)
435 cd01124 KaiC KaiC is a circadi 99.5 5.5E-13 1.2E-17 112.6 11.6 81 145-226 66-164 (187)
436 PRK01156 chromosome segregatio 99.5 2.4E-13 5.2E-18 140.8 11.1 78 147-225 798-883 (895)
437 PRK10246 exonuclease subunit S 99.4 3.9E-13 8.4E-18 140.8 10.6 81 145-226 944-1032(1047)
438 PTZ00132 GTP-binding nuclear p 99.4 8.3E-13 1.8E-17 114.4 10.6 49 149-197 149-204 (215)
439 TIGR00606 rad50 rad50. This fa 99.4 5.5E-13 1.2E-17 142.7 9.3 73 147-219 1196-1278(1311)
440 COG3910 Predicted ATPase [Gene 99.4 4.5E-12 9.8E-17 105.4 12.5 82 146-229 125-206 (233)
441 PRK06793 fliI flagellum-specif 99.4 2.8E-12 6E-17 121.1 10.4 164 13-232 130-303 (432)
442 COG0178 UvrA Excinuclease ATPa 99.3 8.1E-12 1.8E-16 123.1 12.7 98 144-243 475-580 (935)
443 TIGR02168 SMC_prok_B chromosom 99.3 1.6E-12 3.4E-17 137.8 8.0 78 145-225 1084-1165(1179)
444 PRK13830 conjugal transfer pro 99.3 1.5E-11 3.2E-16 125.9 13.8 69 166-235 650-728 (818)
445 PRK00064 recF recombination pr 99.3 1.4E-11 3E-16 115.1 8.7 78 148-229 271-359 (361)
446 TIGR02788 VirB11 P-type DNA tr 99.3 1.1E-11 2.4E-16 113.3 7.8 143 35-239 137-280 (308)
447 PRK02224 chromosome segregatio 99.3 1.5E-11 3.3E-16 127.3 9.1 79 147-227 778-869 (880)
448 PRK06067 flagellar accessory p 99.2 1.5E-10 3.2E-15 101.8 13.4 75 150-225 100-186 (234)
449 TIGR02169 SMC_prok_A chromosom 99.2 1.5E-11 3.3E-16 130.4 8.0 78 146-226 1070-1151(1164)
450 cd01120 RecA-like_NTPases RecA 99.2 8.9E-11 1.9E-15 96.0 10.1 64 150-214 67-140 (165)
451 cd00820 PEPCK_HprK Phosphoenol 99.1 4.8E-11 1.1E-15 91.6 5.2 46 29-81 2-47 (107)
452 TIGR00611 recf recF protein. A 99.1 3E-10 6.4E-15 106.2 7.8 62 150-215 275-345 (365)
453 PRK05399 DNA mismatch repair p 99.1 1.2E-09 2.6E-14 112.2 12.8 69 149-220 665-738 (854)
454 cd01125 repA Hexameric Replica 99.0 8.3E-10 1.8E-14 97.4 9.3 48 164-212 107-160 (239)
455 TIGR03238 dnd_assoc_3 dnd syst 99.0 1.6E-10 3.4E-15 109.6 4.9 51 30-82 20-70 (504)
456 COG0419 SbcC ATPase involved i 99.0 8.8E-10 1.9E-14 114.5 9.8 79 146-226 811-897 (908)
457 cd01131 PilT Pilus retraction 99.0 2.1E-09 4.5E-14 92.2 9.4 57 160-225 66-122 (198)
458 smart00382 AAA ATPases associa 99.0 3.6E-08 7.8E-13 77.6 14.8 63 148-210 58-125 (148)
459 PRK14079 recF recombination pr 98.9 2E-09 4.2E-14 100.2 8.0 77 150-234 263-348 (349)
460 TIGR01026 fliI_yscN ATPase Fli 98.9 9.3E-09 2E-13 98.0 12.6 184 29-237 151-345 (440)
461 TIGR02655 circ_KaiC circadian 98.9 1.5E-10 3.2E-15 112.3 -1.6 70 145-225 110-190 (484)
462 PF00488 MutS_V: MutS domain V 98.9 5E-08 1.1E-12 85.9 14.4 51 166-216 120-171 (235)
463 PRK13891 conjugal transfer pro 98.9 4.4E-08 9.6E-13 101.0 14.7 69 161-230 680-751 (852)
464 TIGR02680 conserved hypothetic 98.8 6.3E-09 1.4E-13 111.7 7.6 62 146-211 1243-1316(1353)
465 TIGR00152 dephospho-CoA kinase 98.8 4.1E-09 9E-14 89.5 4.9 72 153-227 60-133 (188)
466 PF13304 AAA_21: AAA domain; P 98.8 2.2E-08 4.7E-13 86.9 8.3 66 148-214 234-302 (303)
467 cd02023 UMPK Uridine monophosp 98.7 1.9E-08 4.1E-13 86.0 5.6 111 44-183 1-113 (198)
468 TIGR00416 sms DNA repair prote 98.7 2.3E-07 5E-12 89.2 12.7 62 167-228 169-247 (454)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.7 2E-07 4.4E-12 81.4 11.3 26 38-63 16-41 (229)
470 PRK06002 fliI flagellum-specif 98.7 4.7E-08 1E-12 92.9 7.7 64 11-78 137-200 (450)
471 PF13558 SbcCD_C: Putative exo 98.7 6.7E-08 1.4E-12 72.3 6.4 50 145-194 27-89 (90)
472 TIGR01420 pilT_fam pilus retra 98.6 2.7E-07 5.9E-12 85.7 11.6 45 160-212 187-231 (343)
473 PLN03210 Resistant to P. syrin 98.6 1.6E-07 3.5E-12 100.0 10.5 42 35-76 200-241 (1153)
474 PF13555 AAA_29: P-loop contai 98.6 5.9E-08 1.3E-12 67.0 4.4 36 32-67 12-48 (62)
475 TIGR00767 rho transcription te 98.6 9.3E-08 2E-12 89.4 7.0 53 12-66 129-192 (415)
476 cd01121 Sms Sms (bacterial rad 98.6 8.8E-07 1.9E-11 83.0 13.6 62 167-228 157-235 (372)
477 cd01122 GP4d_helicase GP4d_hel 98.6 9.4E-07 2E-11 79.2 13.3 35 30-64 18-52 (271)
478 PRK13898 type IV secretion sys 98.6 1.2E-06 2.5E-11 90.2 15.1 52 164-216 638-690 (800)
479 cd01130 VirB11-like_ATPase Typ 98.6 2.9E-08 6.3E-13 84.2 2.9 47 31-78 14-60 (186)
480 TIGR01070 mutS1 DNA mismatch r 98.6 7.5E-07 1.6E-11 91.5 13.0 51 165-215 668-719 (840)
481 PF09818 ABC_ATPase: Predicted 98.5 3.8E-06 8.1E-11 79.0 14.6 81 149-229 321-416 (448)
482 PRK06995 flhF flagellar biosyn 98.5 4.8E-07 1E-11 87.0 8.7 38 31-68 245-282 (484)
483 PRK07594 type III secretion sy 98.5 2.2E-07 4.9E-12 88.1 6.0 65 12-80 128-192 (433)
484 PRK11823 DNA repair protein Ra 98.4 3.5E-06 7.6E-11 81.0 13.3 59 167-225 155-230 (446)
485 cd00009 AAA The AAA+ (ATPases 98.4 3.4E-06 7.3E-11 66.8 10.9 56 156-212 72-131 (151)
486 PRK13764 ATPase; Provisional 98.4 2.6E-06 5.6E-11 84.0 12.0 57 165-229 321-392 (602)
487 TIGR03015 pepcterm_ATPase puta 98.4 1.4E-06 3E-11 77.8 9.3 39 29-67 29-68 (269)
488 cd01136 ATPase_flagellum-secre 98.4 5.9E-07 1.3E-11 82.5 6.7 59 17-79 47-105 (326)
489 TIGR03880 KaiC_arch_3 KaiC dom 98.4 3.5E-06 7.5E-11 73.4 11.3 57 167-225 106-177 (224)
490 TIGR02903 spore_lon_C ATP-depe 98.4 1.9E-06 4.2E-11 85.9 10.0 44 135-195 246-291 (615)
491 PRK07196 fliI flagellum-specif 98.4 3E-07 6.4E-12 87.3 3.8 40 29-69 143-182 (434)
492 PRK10416 signal recognition pa 98.3 6.5E-06 1.4E-10 75.6 11.9 40 40-80 112-151 (318)
493 TIGR00235 udk uridine kinase. 98.3 3.8E-07 8.3E-12 78.6 2.9 29 40-68 4-32 (207)
494 PRK09183 transposase/IS protei 98.3 2E-06 4.3E-11 76.8 7.5 50 15-65 73-125 (259)
495 PTZ00454 26S protease regulato 98.3 4.8E-06 1E-10 78.8 10.2 55 162-216 232-299 (398)
496 PRK09825 idnK D-gluconate kina 98.3 5.5E-07 1.2E-11 75.8 3.3 28 41-68 2-29 (176)
497 PRK10078 ribose 1,5-bisphospho 98.3 6.3E-07 1.4E-11 76.0 3.6 26 42-67 2-27 (186)
498 PRK09862 putative ATP-dependen 98.3 9E-07 2E-11 85.7 5.0 57 16-76 187-243 (506)
499 PRK09099 type III secretion sy 98.2 1.4E-06 3E-11 83.0 5.7 50 29-80 151-200 (441)
500 cd01393 recA_like RecA is a b 98.2 2E-05 4.2E-10 68.6 12.4 28 38-65 15-42 (226)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-58 Score=384.79 Aligned_cols=219 Identities=22% Similarity=0.292 Sum_probs=185.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+|+|++ ..+|++||++|.+||+++|+||||||||||||||.|+..|+ +|.|.++|.......
T Consensus 1 ~mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~-~G~I~i~g~~~~~~~------ 70 (240)
T COG1126 1 MMIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKK------ 70 (240)
T ss_pred CeEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC-CceEEECCEeccchh------
Confidence 37999999999986 67999999999999999999999999999999999999887 999999986542211
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcC---CCCcH----HHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSDP----VRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
++ ...++.++++++ +.+|+.+|+-++. .+. ....+ +...++++.+++. .+.+|.+||||||||||
T Consensus 71 ~~----~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA 146 (240)
T COG1126 71 DI----LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA 146 (240)
T ss_pred hH----HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH
Confidence 11 124556777776 6788888875543 221 22222 2345677888885 68899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|+++|+|||||+|||+...++++.++++++ .|.|+|+|||++.++.++||||++|++|++++.|++++++.
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999999986 49999999999999999999999999999999999999998
Q ss_pred hhhhh
Q 022663 241 LRNST 245 (294)
Q Consensus 241 ~~~~~ 245 (294)
.+...
T Consensus 226 ~p~~~ 230 (240)
T COG1126 226 NPKSE 230 (240)
T ss_pred CCCCH
Confidence 76543
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-55 Score=384.50 Aligned_cols=218 Identities=27% Similarity=0.402 Sum_probs=179.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|. +|.+.++|.+............
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~-~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCCchhhcCHHHHhhh
Confidence 6999999999986 68999999999999999999999999999999999999887 9999999987654322222233
Q ss_pred cccccccccccccccCcccccccccHHHHh-hcC----------CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGV----------EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
+.|++|.. .....+++.++. ++. ...+.+.+.++++.+++. .++.+.+|||||||||
T Consensus 78 ia~vpQ~~----------~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv 147 (258)
T COG1120 78 LAYVPQSP----------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV 147 (258)
T ss_pred EEEeccCC----------CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence 44443321 222233333322 111 112333567788999985 5888999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
.|||||+++|++|||||||++||..++.+++++++++.+++|.|||+|+||++.+.++||++++|++|+++..|+++++.
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred Hhhhh
Q 022663 240 ELRNS 244 (294)
Q Consensus 240 ~~~~~ 244 (294)
.....
T Consensus 228 T~e~l 232 (258)
T COG1120 228 TEENL 232 (258)
T ss_pred CHHHH
Confidence 65443
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-54 Score=369.71 Aligned_cols=227 Identities=25% Similarity=0.309 Sum_probs=194.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||||.|++ +.+++|+||+|++||+++++|||||||||+||+|.+++.|+ +|.|.++|.+.....
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept-~G~I~i~g~~i~~~d------- 69 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDISDLD------- 69 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC-CceEEECCeecccCC-------
Confidence 5899999999985 67999999999999999999999999999999999999997 999999998754321
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhc---CCCCcH----HHHHHHHHHcCCC----cccccccCCHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFG---VEGSDP----VRRERLIELLDID----LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~ 160 (294)
...+++.++|+.+ ..+++.++..+++.. +.+|++ ++++++++.++++ .+++|++|||||||||.
T Consensus 70 ----~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 70 ----PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145 (309)
T ss_pred ----HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence 1234566777654 678889988766532 234543 3457788889986 47899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
+||||+.+|++||+||||++|||.+|.++.+.+.++.++.|+|||+||||++++.+++|||++|++|+++..++|+++..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhHHHHHHHHhhh
Q 022663 241 LRNSTNLLSVVESWLRSE 258 (294)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (294)
.+.. +.+..++...
T Consensus 226 ~Pan----~FV~~f~g~~ 239 (309)
T COG1125 226 NPAN----DFVEDFFGES 239 (309)
T ss_pred CccH----HHHHHHhccc
Confidence 7543 3445555443
No 4
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-52 Score=355.98 Aligned_cols=221 Identities=23% Similarity=0.328 Sum_probs=177.1
Q ss_pred ccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-ccc
Q 022663 12 NSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVC 89 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~ 89 (294)
++|+++||++.|++.. ..++|++|||+|.+||++||+|+||||||||.|+|+|+..|+ .|.|.++|........ ...
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~-~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CceEEECCcccCccccchhh
Confidence 4899999999997621 014999999999999999999999999999999999999986 9999999965432110 011
Q ss_pred cCCcccccccccccccccCcccccccccHHHHhhc-C--CC--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-V--EG--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~l 161 (294)
...+..++|+. +..+-+..+....+.. + .+ ....+..++++.+++. ++++|++|||||+|||||
T Consensus 81 ~~~VQmVFQDp--------~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 81 YRPVQMVFQDP--------YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ccceeEEecCC--------ccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHH
Confidence 11222222211 1123334444443321 1 11 1233467889999996 689999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++||||||||+||+..+.+++++|.++.++++.|+|+||||+..+..+||||++|++|++++.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=367.82 Aligned_cols=223 Identities=23% Similarity=0.301 Sum_probs=185.4
Q ss_pred cEEEcceEEEcCCC--CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGN--DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~--~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
||++++|+|.|... ....+|+||||+|++||++||||.||||||||+|||.++..|+ +|.+.++|.+.......
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt-sG~v~v~G~di~~l~~~--- 76 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEA--- 76 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEEcCEecccCChH---
Confidence 58999999999752 1246999999999999999999999999999999999999997 99999999765321110
Q ss_pred CCcccccccccccccccCc-ccccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.+ ...++.++++++ +.+....|+. ++.+.+. +.. ..++.++++.+++. .+++|.+|||||||||+
T Consensus 77 -~L----r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa 151 (339)
T COG1135 77 -EL----RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA 151 (339)
T ss_pred -HH----HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH
Confidence 00 123456776665 5555555554 4444432 222 24566788888885 68899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|+|||+|||||+|||.+.+.|+++|+++.++.|.||++|||.|+.+.++||||.+|++|++++.|+..+++.
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhh
Q 022663 241 LRNS 244 (294)
Q Consensus 241 ~~~~ 244 (294)
.+..
T Consensus 232 ~Pk~ 235 (339)
T COG1135 232 NPKH 235 (339)
T ss_pred Ccch
Confidence 7653
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=364.37 Aligned_cols=216 Identities=21% Similarity=0.362 Sum_probs=175.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++|++++|++ .++|+||||+|++|++++|+||||||||||+|+|+|+++|. .|.+.+.|........ .
T Consensus 2 ~~~i~v~nl~v~y~~---~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~-~G~i~~~g~~~~~~~~---~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS-SGEIKIFGKPVRKRRK---R 74 (254)
T ss_pred CcEEEEeeeEEEECC---EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC-cceEEEcccccccccc---C
Confidence 457999999999975 26999999999999999999999999999999999999987 9999988875432111 1
Q ss_pred CCcccccccccccccccCcccccccccHHHHhh-c----------CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF-G----------VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkq 157 (294)
..+.|++|... +......++.++.. + ....+++.+.++++.+++. .++++++|||||+|
T Consensus 75 ~~IgYVPQ~~~--------~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~Q 146 (254)
T COG1121 75 LRIGYVPQKSS--------VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQ 146 (254)
T ss_pred CeEEEcCcccc--------cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHH
Confidence 24555554321 11111234444331 1 1112346678899999986 68999999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||.|||||+++|++|||||||+|+|+.++..++++|.++.++ |+||++||||+..+.++||+|+.|+ ++++..|++++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhh
Confidence 999999999999999999999999999999999999999876 9999999999999999999999996 57889999998
Q ss_pred HHHhhh
Q 022663 238 LDELRN 243 (294)
Q Consensus 238 ~~~~~~ 243 (294)
+.+..+
T Consensus 225 ~~~~~~ 230 (254)
T COG1121 225 VLTEEN 230 (254)
T ss_pred ccCHHH
Confidence 876543
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-51 Score=350.48 Aligned_cols=220 Identities=21% Similarity=0.235 Sum_probs=181.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.+.|++++|+++|++ +.|++||||+|++||+++|+||||||||||||+|.|++.|+ .|.|.++|.+...-...
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~--- 78 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEE--- 78 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHH---
Confidence 568999999999986 68999999999999999999999999999999999999997 99999999874321110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC---CCcHHHH----HHHHHHcCCC---cccccccCCHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE---GSDPVRR----ERLIELLDID---LQWRMHKVSDGQRRR 158 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~---~~~~~~~----~~~l~~l~l~---~~~~~~~LSgGqkqR 158 (294)
.....++.+++++| -.+|..++..++ .+.+. ...+... ..-++..|+. .+.+|++|||||++|
T Consensus 79 -----~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 79 -----ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred -----HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH
Confidence 00123445666555 456777776544 34322 2222222 2335666774 578999999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++||||++.+|++|++||||+||||.+...+.++|+++.++.|.|+|+||||++.+..+|||+++|.+|+|++.|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+..
T Consensus 234 ~~sd 237 (263)
T COG1127 234 LASD 237 (263)
T ss_pred HhCC
Confidence 7653
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-51 Score=355.08 Aligned_cols=197 Identities=27% Similarity=0.342 Sum_probs=165.6
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+..|+ +|.+.++|..... . ..
T Consensus 2 ~~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~-~G~V~~~g~~v~~-p----~~ 72 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT-SGEVLLDGRPVTG-P----GP 72 (248)
T ss_pred ceEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCcccCC-C----CC
Confidence 37999999999986 57999999999999999999999999999999999999987 8999998876421 1 12
Q ss_pred CcccccccccccccccCcccccccccHHHH-hhcCCC--C----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVEG--S----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
++.++.| +..+++..|+.++ .++... . ..+++.++++.+++. .+++|++|||||||||+||
T Consensus 73 ~~~~vFQ----------~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 73 DIGYVFQ----------EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred CEEEEec----------cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH
Confidence 2333322 2445666665444 344322 1 123567788999985 6899999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
|||+.+|++|||||||++||..++..+.+.+.++.++.++||++||||++++-.++|||++|.++
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999994
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=350.56 Aligned_cols=218 Identities=23% Similarity=0.293 Sum_probs=177.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||++.|++ ++.+|+||||+|++||+++||||||||||||||+|+|+..++ .|.+.++|.+.......
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t-~G~i~~~g~~i~~~~~k---- 74 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT-SGEILFNGVQITKLKGK---- 74 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC-cceEEecccchhccchH----
Confidence 37999999999964 368999999999999999999999999999999999988886 88999888654322110
Q ss_pred CcccccccccccccccCc-ccccccccHH-HHhhc-------------CC-CCcHHHHHHHHHHcCCC--cccccccCCH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFG-------------VE-GSDPVRRERLIELLDID--LQWRMHKVSD 153 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-------------~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSg 153 (294)
.-..++..++++++ +.+.+++++. +++.+ +. ..++..+-++++.+++. ..++..+|||
T Consensus 75 ----~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG 150 (258)
T COG3638 75 ----ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG 150 (258)
T ss_pred ----HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc
Confidence 01124455666654 4555555543 32221 11 11223345677888884 5678999999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||||+|||||+++|++||.|||+++|||.+.+.+++.|++++++.|.|||+..|+++.+.+|||||+-|++|+|+++|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHH
Q 022663 234 KLAELDE 240 (294)
Q Consensus 234 ~~~~~~~ 240 (294)
++.++.+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9988643
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=375.03 Aligned_cols=217 Identities=25% Similarity=0.343 Sum_probs=188.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++.|+++||+++|++ ..+++|+||+|++||+++|+||||||||||||+|+|+..|+ +|.|.++|++...-.
T Consensus 3 ~~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~G~I~l~G~~i~~lp----- 73 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVP----- 73 (352)
T ss_pred CceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCC-----
Confidence 357999999999985 68999999999999999999999999999999999999997 999999998754311
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-HhhcCCC---Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEG---SD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~---~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
..++.++++++ +.+|+.+++.+ +.|++.. .. .+++.++++.+++. .+++|++|||||||||
T Consensus 74 --------p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRV 145 (352)
T COG3842 74 --------PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRV 145 (352)
T ss_pred --------hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHH
Confidence 12445666665 67889998754 5577651 11 23567788888886 5899999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++||||||.++||...|.++...++++.++.|.|.|+||||.+++..++|||++|++|+|...|+++++.
T Consensus 146 ALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 146 ALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhh
Q 022663 240 ELRNS 244 (294)
Q Consensus 240 ~~~~~ 244 (294)
..+..
T Consensus 226 ~~P~~ 230 (352)
T COG3842 226 ERPAT 230 (352)
T ss_pred hCcch
Confidence 76543
No 11
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-51 Score=339.05 Aligned_cols=222 Identities=25% Similarity=0.365 Sum_probs=184.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||++.+++++|+. ...+++||||++++||++||+|||||||||+||+|++++.|+ +|.+.++|-+...++.
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~-~G~v~idg~d~~~~p~------ 71 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRDPS------ 71 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC-CceEEEeecccccChH------
Confidence 5899999999976 234899999999999999999999999999999999999997 9999999876543221
Q ss_pred cccccccccccccccC-cccccccccHHHHhh------cCCCC-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIF------GVEGS-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
..++.++..+ +..++..+|+++++. ++... -+.+.+++.+.|++. .++++.+||.||||||+||
T Consensus 72 ------~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 72 ------FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred ------HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence 1233344333 466788888776542 22221 234567888899985 7999999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||+++|++|+|||||+|||..++..+.+++..+. +.|++||++||++++++.+||+|++|++|+++..|+++++....
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999999998875 45999999999999999999999999999999999999987765
Q ss_pred hhhhhHHH
Q 022663 243 NSTNLLSV 250 (294)
Q Consensus 243 ~~~~~~~~ 250 (294)
...++.+.
T Consensus 225 ~~~~le~~ 232 (245)
T COG4555 225 VLRNLEEI 232 (245)
T ss_pred hhcCHHHH
Confidence 55544433
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-50 Score=365.92 Aligned_cols=215 Identities=25% Similarity=0.333 Sum_probs=185.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+|.|++ ..+++++||+|++||+++|+||||||||||||+|+|+..|+ +|.|.++|.+...-.
T Consensus 2 ~~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~-~G~I~i~g~~vt~l~------ 71 (338)
T COG3839 2 AELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT-SGEILIDGRDVTDLP------ 71 (338)
T ss_pred cEEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCC------
Confidence 47999999999975 22899999999999999999999999999999999999987 999999998653211
Q ss_pred CcccccccccccccccCc-ccccccccHHH-HhhcCCCC------cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGS------DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
...+.+++++| +.+++.+++.+ +.|+++.. -.+++.++.+.|++. ++++|.+|||||||||||
T Consensus 72 -------P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAl 144 (338)
T COG3839 72 -------PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVAL 144 (338)
T ss_pred -------hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHH
Confidence 12345566655 56888888654 45655421 134567888999986 799999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|+++|||||+|+||...+..+...|+++.++.|.|+|+||||..++..++|||++|++|+|...|++.++.+.
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999876
Q ss_pred hh
Q 022663 242 RN 243 (294)
Q Consensus 242 ~~ 243 (294)
+.
T Consensus 225 P~ 226 (338)
T COG3839 225 PA 226 (338)
T ss_pred cc
Confidence 54
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=355.64 Aligned_cols=219 Identities=26% Similarity=0.371 Sum_probs=185.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|.++++++.|+. ..+++|||++|+.||+++|+||||||||||||+|+|+..|+ .|.|.++|...+....
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~-~G~I~~~~~~l~D~~~------ 71 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSN------ 71 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC-CceEEECCEeccchhc------
Confidence 6999999999986 67999999999999999999999999999999999999997 9999998884332111
Q ss_pred cccccccccccccccCc-ccccccccH-HHHhhcCCC--------CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVEG--------SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
. ....+.++++++ +.+++.+++ +|+.|+++- ..+.++.++++.+.+. .+++|.+||||||||||
T Consensus 72 ~----~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVA 147 (345)
T COG1118 72 L----AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVA 147 (345)
T ss_pred c----chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHH
Confidence 0 012335666665 557778875 455677531 1234566778888875 58999999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++||||||+++||...+.++..+|.++..+.|.|+++||||.+++.++||||++|++|+|...|+++++..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999988
Q ss_pred hhhhh
Q 022663 241 LRNST 245 (294)
Q Consensus 241 ~~~~~ 245 (294)
.+++.
T Consensus 228 ~P~s~ 232 (345)
T COG1118 228 HPASR 232 (345)
T ss_pred CCCcc
Confidence 76653
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.1e-50 Score=343.41 Aligned_cols=209 Identities=26% Similarity=0.369 Sum_probs=168.2
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+++++||++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|+ +|.+.++|.+.......
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~---- 75 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEK---- 75 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHH----
Confidence 478999999996421 246999999999999999999999999999999999999995 99999988654321100
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhh-c--CCCC----cHHHHHHHHHHcCCC--c-ccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-G--VEGS----DPVRRERLIELLDID--L-QWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~--~~~~----~~~~~~~~l~~l~l~--~-~~~~~~LSgGqkqRv~ 160 (294)
......+..+++++| +.+.+.+++.+++. . +... ...+...+++.+++. . +++|.+||||||||||
T Consensus 76 ---~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 76 ---ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred ---HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 001123445677766 56778888766542 1 1111 234456788888885 3 4789999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||+.+|++||+||||.+||..+.+.++++|.++.++.|+|||+||||.+.+. +|||++.|.+|++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 9999999999999999999999999999999999999888999999999998766 89999999999953
No 15
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=348.17 Aligned_cols=217 Identities=30% Similarity=0.398 Sum_probs=181.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+++++++++++|++. ..+|+++||+|++||+++|+|+||||||||+++++|++.|. +|.+.++|.+.....
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~G~v~~~g~~~~~~~------ 72 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEK------ 72 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC-CCEEEECCeeccchh------
Confidence 479999999999762 57999999999999999999999999999999999999987 788888886543100
Q ss_pred CcccccccccccccccCcc---cccccccHHHHhhcCCC--Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVEG--SD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
. ....++.++++++. +++.....+++.|+..+ .. ..++.++++.+++. .++.+.+|||||||||+
T Consensus 73 ~----~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva 148 (235)
T COG1122 73 S----LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA 148 (235)
T ss_pred h----HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH
Confidence 0 01123345555442 35555566777776543 12 23456788888885 68899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||.+|+.+|++|||||||++||+.++.++++++.++.++.|+|||++|||++++..+|||+++|++|+++.+|++.++++
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999999999999999987768999999999999999999999999999999999988876
Q ss_pred h
Q 022663 241 L 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-49 Score=359.88 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=181.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..++++||+++|++ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|+ +|.+.++|.+.....
T Consensus 3 ~~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~-~G~i~i~G~~~~~~~------ 73 (293)
T COG1131 3 EVIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-SGEILVLGYDVVKEP------ 73 (293)
T ss_pred ceeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEEcCEeCccCH------
Confidence 36899999999982 157999999999999999999999999999999999999986 999999997654310
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhhc---CCC----CcHHHHHHHHHHcCCCc--ccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFG---VEG----SDPVRRERLIELLDIDL--QWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~l~l~~--~~~~~~LSgGqkqRv~l 161 (294)
...+..++++++ ..+++.+|+.+++.. ... ...++++++++.+++.. ++++.+||+|||||++|
T Consensus 74 ------~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~i 147 (293)
T COG1131 74 ------AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSI 147 (293)
T ss_pred ------HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHH
Confidence 122334555555 446778887765421 111 22456788999999974 67899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+||+.+|++|||||||+||||.++.+++++|++++++.+.|||++||.+++++.+||+|++|++|+++..|+++++...
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999999876448999999999999999999999999999999999887654
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-48 Score=360.05 Aligned_cols=221 Identities=22% Similarity=0.272 Sum_probs=175.3
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
||+++||+++|++.+ ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~---- 75 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNS---- 75 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHH----
Confidence 589999999996311 246999999999999999999999999999999999999887 89999988754221000
Q ss_pred CcccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.. ...+..++++++ ..+++..+..+ +.+.. .... .+++.++++.+++. .++++.+|||||||||+|
T Consensus 76 ~l----~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~I 151 (343)
T TIGR02314 76 EL----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAI 151 (343)
T ss_pred HH----HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 00 001223444443 23444445433 33322 1111 23456788888885 588999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||++||+.++..++++|+++.++.|.|||+||||++.+.++||+|++|++|++++.|++++++..
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 99999999999999999999999999999999999876799999999999999999999999999999999999998764
Q ss_pred h
Q 022663 242 R 242 (294)
Q Consensus 242 ~ 242 (294)
+
T Consensus 232 p 232 (343)
T TIGR02314 232 P 232 (343)
T ss_pred C
Confidence 3
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=360.79 Aligned_cols=214 Identities=21% Similarity=0.295 Sum_probs=177.3
Q ss_pred ccEEEcceEEEc-CCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 12 NSIKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y-~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.+|+++||+++| ++ +.+|+|+||+|++||+++|+||||||||||||+|+|+..|+ +|.+.++|.+.....
T Consensus 2 ~~l~i~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~----- 72 (356)
T PRK11650 2 AGLKLQAVRKSYDGK---TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT-SGEIWIGGRVVNELE----- 72 (356)
T ss_pred CEEEEEeEEEEeCCC---CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCC-----
Confidence 369999999999 54 57999999999999999999999999999999999998886 899999887542210
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+.++++++ ..+++.++..++ .++.. ... ..++.++++.+++. .++++.+|||||||||+
T Consensus 73 --------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRva 144 (356)
T PRK11650 73 --------PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVA 144 (356)
T ss_pred --------HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH
Confidence 01123444444 345566665443 34322 111 23456788888885 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+
T Consensus 145 lARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 145 MGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999887779999999999999999999999999999999999999876
Q ss_pred hh
Q 022663 241 LR 242 (294)
Q Consensus 241 ~~ 242 (294)
.+
T Consensus 225 ~p 226 (356)
T PRK11650 225 KP 226 (356)
T ss_pred CC
Confidence 54
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.7e-48 Score=355.67 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=174.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ ..+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~-~G~v~i~G~~~~~~~~----- 76 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-AGSISLCGEPVPSRAR----- 76 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEecccchH-----
Confidence 47999999999975 57999999999999999999999999999999999999887 8999998876432110
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhh--c-CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF--G-VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..+..++++++ ..++..++..+++. . ..... ..+..++++.+++. .++++++||||||||++|
T Consensus 77 -------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 149 (306)
T PRK13537 77 -------HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTL 149 (306)
T ss_pred -------HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHH
Confidence 11223444443 33445556554432 1 11111 23456778888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+||+++|++|||||||+|||+.++..++++|.++.+ .|+|||++||+++++.++||||++|++|+++..|+++++...
T Consensus 150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999864 589999999999999999999999999999999999988654
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-48 Score=358.67 Aligned_cols=214 Identities=22% Similarity=0.336 Sum_probs=174.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++||+++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~-~G~i~i~G~~~~~~~~---- 110 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD-AGKITVLGVPVPARAR---- 110 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-ceEEEECCEECCcchH----
Confidence 457999999999975 57999999999999999999999999999999999999887 8999999876432110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-h-c-CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F-G-VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
..+..++++++ ..++..++..+++ + . ..... ..+..++++.+++. .++++.+|||||||||+
T Consensus 111 --------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ 182 (340)
T PRK13536 111 --------LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT 182 (340)
T ss_pred --------HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH
Confidence 11223344433 2344455554433 1 1 11111 22345678888886 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||+||+++|++|||||||+|||+.++..++++|.++.+ .|.|||++||+++++.++||+|++|++|+++..|+++++..
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999865 59999999999999999999999999999999999999865
Q ss_pred h
Q 022663 241 L 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 262 ~ 262 (340)
T PRK13536 262 E 262 (340)
T ss_pred h
Confidence 4
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.9e-48 Score=359.07 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=179.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+..|+ +|.+.++|.+.....
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~----- 72 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLP----- 72 (353)
T ss_pred CcEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCC-----
Confidence 357999999999975 56899999999999999999999999999999999998887 899999887542110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+.++++++ ..+++.++..++ .++.. ..+ ..+++++++.+++. .++++.+|||||||||+
T Consensus 73 --------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRva 144 (353)
T TIGR03265 73 --------PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA 144 (353)
T ss_pred --------HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHH
Confidence 01223444444 345666665443 34322 111 23567888999986 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|+++++.+
T Consensus 145 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999887779999999999999999999999999999999999999876
Q ss_pred hhh
Q 022663 241 LRN 243 (294)
Q Consensus 241 ~~~ 243 (294)
.+.
T Consensus 225 ~p~ 227 (353)
T TIGR03265 225 HPA 227 (353)
T ss_pred CCC
Confidence 543
No 22
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-49 Score=337.04 Aligned_cols=217 Identities=22% Similarity=0.302 Sum_probs=176.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+++++++|+++|++ ..+++||||+|++||+++||||||||||||+|+|+|.++|+ +|.+.+.|.+.......
T Consensus 3 ~lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~-~G~v~~~G~~it~l~p~---- 74 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPH---- 74 (250)
T ss_pred ceeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC-CceEEECCcccCCCCHH----
Confidence 57999999999987 67999999999999999999999999999999999999997 99999998865321110
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcC------------CCC---c---HHHHHHHHHHcCCC--cccccc
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV------------EGS---D---PVRRERLIELLDID--LQWRMH 149 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~------------~~~---~---~~~~~~~l~~l~l~--~~~~~~ 149 (294)
.+. +..+...+| ..+++.+|+.++. .+. ..+ . .++...+++.+++. .+.+.+
T Consensus 75 ~ia------r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 75 RIA------RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred HHH------hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 000 111111223 3456666654432 210 011 1 23345678888886 578899
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+||+|||+|+.|||||+.+|++||||||.+||.+....++.+.|+++.++.|.||++|.||++.+..+||||++|+.|++
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence 99999999999999999999999999999999999999999999999876789999999999999999999999999999
Q ss_pred EecccHHHHHHhh
Q 022663 230 RRAEKLAELDELR 242 (294)
Q Consensus 230 ~~~g~~~~~~~~~ 242 (294)
+.+|+|+++.+++
T Consensus 229 IAeG~P~eV~~dp 241 (250)
T COG0411 229 IAEGTPEEVRNNP 241 (250)
T ss_pred cccCCHHHHhcCH
Confidence 9999999998765
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-48 Score=357.75 Aligned_cols=216 Identities=22% Similarity=0.294 Sum_probs=178.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+..|+ +|.+.++|.+.....
T Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~----- 74 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRS----- 74 (351)
T ss_pred CcEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCC-----
Confidence 458999999999975 56999999999999999999999999999999999999887 899999887542110
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+.++++++ ..+++.++..+ +.++.. ... .+++.++++.+++. .++++.+|||||||||+
T Consensus 75 --------~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa 146 (351)
T PRK11432 75 --------IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA 146 (351)
T ss_pred --------HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 01223444444 34566666544 444432 111 23456788888885 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|+++++..
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999987779999999999999999999999999999999999999876
Q ss_pred hhh
Q 022663 241 LRN 243 (294)
Q Consensus 241 ~~~ 243 (294)
.+.
T Consensus 227 ~p~ 229 (351)
T PRK11432 227 QPA 229 (351)
T ss_pred CCC
Confidence 543
No 24
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-48 Score=339.77 Aligned_cols=215 Identities=21% Similarity=0.259 Sum_probs=168.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....... ..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~----~~ 72 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SGEVLIDGEDISGLSEA----EL 72 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccChh----hH
Confidence 478999999965 56999999999999999999999999999999999998886 89998888653211000 00
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
..++..++++++ ..++..++..++ .+.. .... ..++.++++.+++. .++++.+|||||||||+||
T Consensus 73 ----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 73 ----YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred ----HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 001122333333 233444454433 2221 1111 22346678888885 4788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||+|++|++|+++..|+++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999999999876558999999999999999999999999999999999887653
No 25
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.2e-48 Score=316.56 Aligned_cols=212 Identities=23% Similarity=0.352 Sum_probs=178.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||.+++|.+.|+. .+ =.++++|+.||+++|+|||||||||||++|+|...|. +|.+.++|.+......
T Consensus 1 ~l~L~~V~~~y~~---~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P------ 68 (231)
T COG3840 1 MLALDDVRFSYGH---LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPP------ 68 (231)
T ss_pred CccccceEEeeCc---ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCc------
Confidence 4778999999964 22 3789999999999999999999999999999999887 9999999886432111
Q ss_pred cccccccccccccccC-cccccccccHHHHh-hcCCC------CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAG-EIPLQGDFSAEHMI-FGVEG------SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
..+.+.+++ +..+|..+++++++ ++... .++++++.++..+|+. .++.|.+|||||||||+||
T Consensus 69 -------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALA 141 (231)
T COG3840 69 -------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALA 141 (231)
T ss_pred -------ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence 122233333 35677777766543 44432 3456677888899986 6889999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|+|+.+-+||||||||++|||.-|.+++.++.++|.+.+.|++||||.++++.+++|+++++++|+|.+.|+.++++...
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred h
Q 022663 243 N 243 (294)
Q Consensus 243 ~ 243 (294)
.
T Consensus 222 ~ 222 (231)
T COG3840 222 A 222 (231)
T ss_pred C
Confidence 4
No 26
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8.2e-48 Score=361.12 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=173.6
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||||+|+|++.|. +|.+.++|.+.......
T Consensus 2 ~~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~-sG~I~l~G~~i~~~~~~---- 73 (402)
T PRK09536 2 PMIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSAR---- 73 (402)
T ss_pred ceEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEEcCcCCHH----
Confidence 47999999999975 57999999999999999999999999999999999998886 89999988754321100
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcC-------C---CCcHHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV-------E---GSDPVRRERLIELLDID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-------~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkq 157 (294)
...+.++++++ ..++..++..+++ ++. . ..+.++++++++.+++. .++++.+|||||||
T Consensus 74 -------~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQ 146 (402)
T PRK09536 74 -------AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQ 146 (402)
T ss_pred -------HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 11122333333 2233344544432 221 1 01233567788888885 57889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+++|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++++.++|||+++|++|+++..|++++
T Consensus 147 Rv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 147 RVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 58999999999999999999999999999999999998
Q ss_pred HHHhh
Q 022663 238 LDELR 242 (294)
Q Consensus 238 ~~~~~ 242 (294)
+....
T Consensus 226 v~~~~ 230 (402)
T PRK09536 226 VLTAD 230 (402)
T ss_pred HhCcH
Confidence 76543
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=326.44 Aligned_cols=221 Identities=21% Similarity=0.215 Sum_probs=175.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~ 86 (294)
.+.++++||++.|+. +.+|+|||++|++++++|||||||||||||||++..+.... -.|.+.++|.+.....
T Consensus 5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~- 80 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK- 80 (253)
T ss_pred cceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC-
Confidence 457999999999986 67999999999999999999999999999999999865332 1477888887764321
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC------cccccccCCH
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
+ ....+++.++++++ +.-++....+++.++.. +.. .+.+++.++...++ +++.+..|||
T Consensus 81 ------~--d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSG 152 (253)
T COG1117 81 ------V--DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG 152 (253)
T ss_pred ------C--CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCCh
Confidence 1 11235667787776 32333223455556532 111 12344555555542 5677889999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|||||++|||||+.+|+|||||||||+|||.+..+|.++|.++.+ ..|||+|||++..+.+++|++.++..|++++.|
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 999999999999999999999999999999999999999999864 579999999999999999999999999999999
Q ss_pred cHHHHHHhhhhh
Q 022663 234 KLAELDELRNST 245 (294)
Q Consensus 234 ~~~~~~~~~~~~ 245 (294)
+.++++.++..+
T Consensus 231 ~T~~iF~~P~~~ 242 (253)
T COG1117 231 PTDKIFTNPKHK 242 (253)
T ss_pred CHHhhhcCccHH
Confidence 999999876543
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.6e-47 Score=355.59 Aligned_cols=216 Identities=24% Similarity=0.353 Sum_probs=178.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++|++++|++ ..+|+++||+|++||+++|+|||||||||||++|+|+..|+ +|.+.++|.+.....
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~----- 82 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVP----- 82 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCC-----
Confidence 467999999999975 56999999999999999999999999999999999999886 899999887542110
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+.++++++ ..+++.++..+ +.++.. ... ..++.++++.+++. .++++.+|||||||||+
T Consensus 83 --------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa 154 (375)
T PRK09452 83 --------AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA 154 (375)
T ss_pred --------HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 01123444443 34566666544 444432 111 23456788888885 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|+++++..
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999887779999999999999999999999999999999999999876
Q ss_pred hhh
Q 022663 241 LRN 243 (294)
Q Consensus 241 ~~~ 243 (294)
.+.
T Consensus 235 ~p~ 237 (375)
T PRK09452 235 EPK 237 (375)
T ss_pred Ccc
Confidence 543
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.3e-47 Score=316.29 Aligned_cols=210 Identities=23% Similarity=0.357 Sum_probs=172.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ ++++|+||||+|++||++-|+||||||||||+|+|.+...|+ .|.+.++|.+...-.. .+
T Consensus 1 mI~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt-~G~i~~~~~dl~~l~~----~~ 73 (223)
T COG2884 1 MIRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKG----RE 73 (223)
T ss_pred CeeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC-CceEEECCeecccccc----cc
Confidence 5899999999987 367999999999999999999999999999999999999887 9999999887543111 11
Q ss_pred cccccccccccccccCc-ccccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
+. .+++.++.+++ +.+....+. ++..+.+. +.. .+++.++++..++. .+..|.+|||||||||+||
T Consensus 74 iP----~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 74 IP----FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred cc----hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 21 23556776665 445555554 45444432 211 34556778888885 5678999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
||++.+|++||.||||.+|||....+|++++.++.+ .|.|||++|||.+.+..+--|++.|++|+++.+..
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999865 69999999999999999999999999999987643
No 30
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-47 Score=355.67 Aligned_cols=214 Identities=26% Similarity=0.339 Sum_probs=174.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+......
T Consensus 2 ~~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~G~I~~~g~~i~~~~~----- 72 (369)
T PRK11000 2 ASVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-SGDLFIGEKRMNDVPP----- 72 (369)
T ss_pred CEEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCH-----
Confidence 36999999999975 56999999999999999999999999999999999998886 8999988865421100
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..+.++++++ ..+++.++..++ .++.. ... .+++.++++.+++. .++++.+|||||||||+|
T Consensus 73 --------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 --------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 144 (369)
T ss_pred --------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence 0112333333 334555555443 33321 111 23456788888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||++||+.++..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++...
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999999998776689999999999999999999999999999999999988764
Q ss_pred h
Q 022663 242 R 242 (294)
Q Consensus 242 ~ 242 (294)
+
T Consensus 225 p 225 (369)
T PRK11000 225 P 225 (369)
T ss_pred c
Confidence 3
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.9e-47 Score=352.33 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=175.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~------- 70 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLH------- 70 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCC-------
Confidence 5899999999975 57999999999999999999999999999999999998886 899999887542110
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCC------CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE------GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
...+.++++++ ..+++.++..+ +.++.. ... .+++.++++.+++. .++++.+||||||||
T Consensus 71 ------~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QR 144 (353)
T PRK10851 71 ------ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR 144 (353)
T ss_pred ------HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 01122344433 33455555544 333321 111 23456788888885 588999999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||++||+..+..+.+.|.++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999998876789999999999999999999999999999999999998
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+.+
T Consensus 225 ~~~p 228 (353)
T PRK10851 225 WREP 228 (353)
T ss_pred HhCc
Confidence 7654
No 32
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-47 Score=335.77 Aligned_cols=212 Identities=25% Similarity=0.311 Sum_probs=168.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... ...
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~--~~~- 74 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPV--QER- 74 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCc--ccc-
Confidence 5899999999975 57999999999999999999999999999999999998876 8999888865321100 011
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCC--CC----c----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GS----D----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~----~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
.++++++ ..++...+..+ +.+... .. . .+...++++.+++. .++++.+||||||||
T Consensus 75 ----------~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 144 (239)
T cd03296 75 ----------NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQR 144 (239)
T ss_pred ----------ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 1223322 22333344433 222211 10 1 12345678888885 477899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|+|||++|||++++..+||++++|++|+++..|+++++
T Consensus 145 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 145 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999999998765689999999999999999999999999999999998887
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 225 ~~~ 227 (239)
T cd03296 225 YDH 227 (239)
T ss_pred hcC
Confidence 543
No 33
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-47 Score=330.43 Aligned_cols=204 Identities=25% Similarity=0.384 Sum_probs=159.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...... ....+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~--~~~~i 74 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDVTGVPP--ERRNI 74 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcCcCch--hhccE
Confidence 478999999965 57999999999999999999999999999999999998876 8999888865321100 01122
Q ss_pred ccccccccccccccCcccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
.+.++. ..++...+..+. .+.. .... .+++.++++.+++. .++++.+||||||||++||||
T Consensus 75 ~~v~q~----------~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 75 GMVFQD----------YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEEcCc----------hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 222221 122333343332 2211 1111 23456778888885 478889999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++..+||+|++|++|+++..|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999987656899999999999999999999999999997654
No 34
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-47 Score=331.73 Aligned_cols=208 Identities=23% Similarity=0.334 Sum_probs=164.6
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... .
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~-~------ 69 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREP-R------ 69 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecCcCh-H------
Confidence 578999999975 57999999999999999999999999999999999998876 899988876432100 0
Q ss_pred ccccccccccccccCc-ccccccccHHH-Hhhc--CCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
.+...++++++ ..+++..+..+ +.+. .... ..+++.++++.+++. .++++.+|||||||||+|||
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~ 144 (220)
T cd03265 70 -----EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIAR 144 (220)
T ss_pred -----HHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHH
Confidence 01112333332 22333344333 2221 1111 123456788888885 47889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+.+|++|||||||++||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|+++..+++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999876558999999999999999999999999999998887665
No 35
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.5e-47 Score=335.45 Aligned_cols=215 Identities=21% Similarity=0.292 Sum_probs=167.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+....... .
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS-SGSILLEGTDITKLRGK----K 73 (243)
T ss_pred CeEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ccEEEECCEEhhhCCHH----H
Confidence 4889999999972 156999999999999999999999999999999999998876 89999888653210000 0
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hcCC--------------CCcHHHHHHHHHHcCCC--cccccccCCHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE--------------GSDPVRRERLIELLDID--LQWRMHKVSDG 154 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~l~~l~l~--~~~~~~~LSgG 154 (294)
. ..++..++++++ ..++...+..+++ +... .....++.++++.+++. .++++.+||||
T Consensus 74 ~----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 74 L----RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGG 149 (243)
T ss_pred H----HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence 0 001122333333 2233334443322 2110 01123456678888885 47889999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||+||||++++.++||++++|++|+++..|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999876568999999999999999999999999999999998
Q ss_pred HHHH
Q 022663 235 LAEL 238 (294)
Q Consensus 235 ~~~~ 238 (294)
++++
T Consensus 230 ~~~~ 233 (243)
T TIGR02315 230 PSEL 233 (243)
T ss_pred HHHh
Confidence 8775
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.1e-47 Score=346.36 Aligned_cols=212 Identities=24% Similarity=0.357 Sum_probs=170.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~------- 72 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD-RGKITVLGEPVPSRA------- 72 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcccH-------
Confidence 6999999999975 56999999999999999999999999999999999998876 899998886532110
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-h-c-CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F-G-VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
...+..++++++ ..+++.++..+++ + . ..... ..+..++++.+++. .++++.+|||||||||+||
T Consensus 73 -----~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 73 -----RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA 147 (303)
T ss_pred -----HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHH
Confidence 011122333333 2233444544332 1 1 11111 12345678888885 4788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..|+++++...
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999999865 589999999999999999999999999999999999887643
No 37
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-47 Score=353.08 Aligned_cols=216 Identities=25% Similarity=0.317 Sum_probs=178.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++|++++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+..|+ .|.+.++|.+.....
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~----- 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT-AGQIMLDGVDLSHVP----- 87 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCC-----
Confidence 457999999999975 46999999999999999999999999999999999999887 899998886532100
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
..++.++++++ ..+++.++..++ .++.. ... .+++.++++.+++. .++++.+|||||||||+
T Consensus 88 --------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 --------PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVA 159 (377)
T ss_pred --------HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 11223444444 346666665544 34322 111 23456778888885 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+..+.+.|.++.++.|.|+|+||||.+++..+||++++|++|+++..|+++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999887779999999999999999999999999999999999999876
Q ss_pred hhh
Q 022663 241 LRN 243 (294)
Q Consensus 241 ~~~ 243 (294)
.+.
T Consensus 240 ~p~ 242 (377)
T PRK11607 240 HPT 242 (377)
T ss_pred CCc
Confidence 543
No 38
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.6e-47 Score=352.59 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=176.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCC--ceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR--DVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~--g~i~~~~~~~~~~~~~~~~ 90 (294)
.|+++||+++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+..|+ + |.+.++|.+.....
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~~~G~i~~~g~~~~~~~----- 75 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAP----- 75 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCEEEEECCEECCCCC-----
Confidence 5899999999975 46999999999999999999999999999999999998886 7 99999887542110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+.++++++ ..+++.++..++ .++.. ... ..++.++++.+++. .++++.+|||||||||+
T Consensus 76 --------~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 76 --------PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIA 147 (362)
T ss_pred --------HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHH
Confidence 01123444443 345566665443 33321 111 23456788888885 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR-GATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
|||||+.+|++|||||||++||+..+.++.+.|.++.++. |.|+|+||||++++..+||+|++|++|+++..|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999987765 799999999999999999999999999999999999987
Q ss_pred Hhh
Q 022663 240 ELR 242 (294)
Q Consensus 240 ~~~ 242 (294)
+.+
T Consensus 228 ~~p 230 (362)
T TIGR03258 228 DAP 230 (362)
T ss_pred hCc
Confidence 654
No 39
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-47 Score=333.53 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=166.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++ ++++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+....... ..
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----~~ 73 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKGK----AL 73 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEeccccCHh----HH
Confidence 468999999964 146999999999999999999999999999999999998776 89998888653211000 00
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hcCC----------C----CcHHHHHHHHHHcCCC--cccccccCCHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE----------G----SDPVRRERLIELLDID--LQWRMHKVSDGQ 155 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----------~----~~~~~~~~~l~~l~l~--~~~~~~~LSgGq 155 (294)
......++++++ ..++...+..+++ +... . ...+++.++++.+++. .++++.+|||||
T Consensus 74 ----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 149 (241)
T cd03256 74 ----RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQ 149 (241)
T ss_pred ----HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHH
Confidence 001112333332 2233334433322 2110 0 1123455678888885 478899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++|||++++..+||++++|++|+++..+++
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence 99999999999999999999999999999999999999998765689999999999999999999999999999999988
Q ss_pred HHHH
Q 022663 236 AELD 239 (294)
Q Consensus 236 ~~~~ 239 (294)
+++.
T Consensus 230 ~~~~ 233 (241)
T cd03256 230 AELT 233 (241)
T ss_pred HHhh
Confidence 8763
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-47 Score=351.61 Aligned_cols=220 Identities=24% Similarity=0.290 Sum_probs=172.4
Q ss_pred cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
||+++||+++|+.. ..+++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~i~~~~~~---- 75 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-SGRVLVDGQDLTALSEK---- 75 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHH----
Confidence 58999999999721 1246999999999999999999999999999999999998886 89999988754211000
Q ss_pred CcccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.. ..++..++++++ ..++...+..+ +.+.. .... .++..++++.+++. .++++.+|||||||||+|
T Consensus 76 ~~----~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l 151 (343)
T PRK11153 76 EL----RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAI 151 (343)
T ss_pred HH----HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 00 001123333333 23344444433 32221 1111 23456788888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||++|||++++.++||++++|++|+++..|+++++...
T Consensus 152 AraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999999998766689999999999999999999999999999999999888654
No 41
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=335.49 Aligned_cols=207 Identities=21% Similarity=0.271 Sum_probs=165.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+++.+... ..
T Consensus 10 ~~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~-----~~ 80 (257)
T PRK11247 10 GTPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAGTAPLAE-----AR 80 (257)
T ss_pred CCcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEHHH-----hh
Confidence 357999999999975 57999999999999999999999999999999999998876 8888876643210 01
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
..+.+.++. ..+++..+..+++ +........+..++++.+++. .++++.+|||||||||+|||||+.
T Consensus 81 ~~i~~v~q~----------~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 81 EDTRLMFQD----------ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred CceEEEecC----------ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 122222211 2233334444433 332211234556788888885 478899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
+|++|||||||+|||+.++..+.++|.++.++.+.|||+||||++++..+||+|++|++|+++..++.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999987666899999999999999999999999999999887654
No 42
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.5e-46 Score=345.82 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=174.5
Q ss_pred CcccEEEcceEEEcCCCC----------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663 10 KLNSIKVCGMQFSYEGND----------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR 79 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~----------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~ 79 (294)
..++|+++||+++|+... ...+++||||+|++||+++|+|+||||||||+++|+|++.|+ +|.+.++|.
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~-~G~I~~~G~ 83 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT-DGEVAWLGK 83 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CcEEEECCE
Confidence 456899999999996311 146899999999999999999999999999999999998876 899999887
Q ss_pred cccccccccccCCcccccccccccccccCcc---cccccccHHHHh-hc---CC-CCc----HHHHHHHHHHcCCC---c
Q 022663 80 SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-FG---VE-GSD----PVRRERLIELLDID---L 144 (294)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~---~~-~~~----~~~~~~~l~~l~l~---~ 144 (294)
+........ . ..++..++++++. .+.+.++..+++ +. .. ... .+++.++++.+++. .
T Consensus 84 ~i~~~~~~~----~----~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 84 DLLGMKDDE----W----RAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred ECCcCCHHH----H----HHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 643211000 0 0011223333332 133344443332 11 10 111 23346778888883 4
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
++++++|||||+|||+|||||+.+|++|||||||++||+.++.+++++|.++.++.|.|+|+||||++++..+||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 78999999999999999999999999999999999999999999999999987767999999999999999999999999
Q ss_pred eCCeEEecccHHHHHHhh
Q 022663 225 QDGELRRAEKLAELDELR 242 (294)
Q Consensus 225 ~~G~i~~~g~~~~~~~~~ 242 (294)
++|++++.|+.+++.+..
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999887653
No 43
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=340.20 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=169.9
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+|+++||+++|++.. .+++|+||||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~--- 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-SGKIIIDGVDITDKKVK--- 77 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEECCEECCCcCcc---
Confidence 489999999996421 136999999999999999999999999999999999998886 89999988654221000
Q ss_pred CCcccccccccccccccCccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC----cccccccCCHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID----LQWRMHKVSDGQR 156 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~----~~~~~~~LSgGqk 156 (294)
....+..++++++.+ ++. .+. +++.++. .... .+++.++++.+++. .++++.+||||||
T Consensus 78 ------~~~~~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~ 150 (287)
T PRK13637 78 ------LSDIRKKVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK 150 (287)
T ss_pred ------HHHHhhceEEEecCchhcccc-ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHH
Confidence 001112233333321 222 233 3333321 1112 12456788888884 4788999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
||++|||||+.+|++|||||||+|||+.++.+++++|.+++++.|.|||+||||++++..+||||++|++|+++..|+++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999987666899999999999999999999999999999999998
Q ss_pred HHHH
Q 022663 237 ELDE 240 (294)
Q Consensus 237 ~~~~ 240 (294)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8765
No 44
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=330.80 Aligned_cols=219 Identities=23% Similarity=0.286 Sum_probs=168.9
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
||+++|++++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~---- 75 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGK---- 75 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHH----
Confidence 489999999997510 027999999999999999999999999999999999998876 89999888653211000
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.. ......++++++ ..++...+..+. .+.. .... ...+.++++.+++. .++++.+|||||+|||+|
T Consensus 76 ~~----~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 76 EL----RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred HH----HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHH
Confidence 00 001122333333 223333444332 2211 1111 22456778888885 477899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|+++..++.+++.+
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999876568999999999999999999999999999999998877643
No 45
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.3e-46 Score=337.52 Aligned_cols=219 Identities=17% Similarity=0.197 Sum_probs=170.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~--- 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRS--- 77 (269)
T ss_pred cceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccChh---
Confidence 468999999999965 57999999999999999999999999999999999998876 89999887643210000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
.. ...+..++++++ ..++...+..+++ +.. ...+ ......+++.+++. .++++.+|||||||||
T Consensus 78 -~~----~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 78 -RL----YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred -hH----HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 00 000112223322 2233334443322 211 1111 12345678888885 5778999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||+||||++++..+||++++|++|+++..|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987656899999999999999999999999999999999998876
Q ss_pred Hh
Q 022663 240 EL 241 (294)
Q Consensus 240 ~~ 241 (294)
+.
T Consensus 233 ~~ 234 (269)
T PRK11831 233 AN 234 (269)
T ss_pred cC
Confidence 53
No 46
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-46 Score=330.15 Aligned_cols=214 Identities=20% Similarity=0.258 Sum_probs=168.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~---- 73 (241)
T PRK14250 2 NEIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT-EGSILIDGVDIKTIDVI---- 73 (241)
T ss_pred ceEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcChH----
Confidence 36999999999965 46999999999999999999999999999999999998876 89999888653211000
Q ss_pred CcccccccccccccccCcc-cccccccHHHH-hhcC--CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGV--EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAra 164 (294)
.++..++++++. .++. .+..+. .+.. ......+...+++.+++. .++++.+||||||||++||||
T Consensus 74 -------~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 74 -------DLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred -------HhhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 011122333321 2222 233332 2211 111233456788888884 367899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+.+|++|||||||+|||+.++..+.+.|.++.++.|.|||++|||++++..+||+|++|++|+++..++++++...
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999988765689999999999999999999999999999999999887653
No 47
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=345.00 Aligned_cols=224 Identities=17% Similarity=0.191 Sum_probs=171.4
Q ss_pred ccEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC---CCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG---GRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~---~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||++.|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|++.+. .+|.+.++|.+.......
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred ceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999965211 35999999999999999999999999999999999988642 378999988754221100
Q ss_pred cccCCcccccccccccccccCccc---ccccccHHH-Hhh---cCCCC----cHHHHHHHHHHcCCC-----cccccccC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEH-MIF---GVEGS----DPVRRERLIELLDID-----LQWRMHKV 151 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~---~~~~~----~~~~~~~~l~~l~l~-----~~~~~~~L 151 (294)
... ......++++++.+ +.+.++..+ +.. ..... ..+++.++++.+++. +++++++|
T Consensus 82 ~~~-------~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L 154 (326)
T PRK11022 82 ERR-------NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL 154 (326)
T ss_pred HHH-------HHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 000 00011233333321 233333321 111 11111 123456788888884 36789999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+|||+|||||+.+|++||+||||++||+.++.+++++|.++.++.|.|+|+||||++++..+||||++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987679999999999999999999999999999999
Q ss_pred cccHHHHHHhh
Q 022663 232 AEKLAELDELR 242 (294)
Q Consensus 232 ~g~~~~~~~~~ 242 (294)
.|+.+++.+..
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999987653
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.6e-47 Score=328.46 Aligned_cols=206 Identities=24% Similarity=0.359 Sum_probs=158.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++. .+++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....... .
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----~ 74 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT-RGKIRFNGQDLTRLRGR----E 74 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEehhhcChh----H
Confidence 48999999999641 136999999999999999999999999999999999998876 89999888653210000 0
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
. ..++..++++++ ..++...+..+ +.+.. ... ..+++.++++.+++. .++++.+|||||||||+||
T Consensus 75 ~----~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 75 I----PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred H----HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 0 001122333333 22333344433 32221 111 123456788888885 5788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
|||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||+||||++++..+||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998865 489999999999999999999999999974
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-46 Score=330.92 Aligned_cols=212 Identities=23% Similarity=0.312 Sum_probs=165.6
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.........
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~---- 72 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEI---- 72 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEECCCCCHHHH----
Confidence 468999999975 46999999999999999999999999999999999998876 8999888764321100000
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhcC--C-CC-------------cHHHHHHHHHHcCCC--cccccccCCH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--E-GS-------------DPVRRERLIELLDID--LQWRMHKVSD 153 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~-~~-------------~~~~~~~~l~~l~l~--~~~~~~~LSg 153 (294)
.+..++++++ ..+++.++..+. .+.. . .. ......++++.+++. .++++.+|||
T Consensus 73 ------~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 146 (236)
T cd03219 73 ------ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSY 146 (236)
T ss_pred ------HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCH
Confidence 0111233322 223344444333 2211 0 00 122356778888885 4788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999998865 5899999999999999999999999999999999
Q ss_pred cHHHHHH
Q 022663 234 KLAELDE 240 (294)
Q Consensus 234 ~~~~~~~ 240 (294)
+++++..
T Consensus 226 ~~~~~~~ 232 (236)
T cd03219 226 TPDEVRN 232 (236)
T ss_pred CHHHhcc
Confidence 8887643
No 50
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3e-46 Score=329.09 Aligned_cols=212 Identities=26% Similarity=0.449 Sum_probs=166.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++|++++|++ +++|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|.+.++|.+......
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~i~~~~~------ 70 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPR------ 70 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcccCCh------
Confidence 4889999999975 57999999999999999999999999999999999998876 8999888764321100
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
.....++++++ ..++...+..+.+ +. ..... .....++++.+++. .++++.+|||||+||++||
T Consensus 71 ------~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 71 ------AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred ------hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 00012233332 1222333433322 21 11111 22345678888875 5788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++|||++++.. ||++++|++|+++..++++++...
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999875568999999999999975 999999999999999998887654
No 51
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=334.85 Aligned_cols=215 Identities=24% Similarity=0.345 Sum_probs=169.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~--- 81 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-EGEILLDAQPLESWSSK--- 81 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEehhhCCHH---
Confidence 457999999999975 47999999999999999999999999999999999998776 89999888653211000
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-HhhcCC---C----C---cHHHHHHHHHHcCCC--cccccccCCHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE---G----S---DPVRRERLIELLDID--LQWRMHKVSDGQR 156 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~---~----~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqk 156 (294)
.++..++++++ ..++..++..+ +.+... . . ...+...+++.+++. .++++.+||||||
T Consensus 82 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 153 (265)
T PRK10575 82 --------AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGER 153 (265)
T ss_pred --------HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHH
Confidence 01112223222 12233334333 222210 0 0 123456778888884 5788999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++.++||+|++|++|+++..++.+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 99999999999999999999999999999999999999987656899999999999999999999999999999999888
Q ss_pred HHHH
Q 022663 237 ELDE 240 (294)
Q Consensus 237 ~~~~ 240 (294)
++.+
T Consensus 234 ~~~~ 237 (265)
T PRK10575 234 ELMR 237 (265)
T ss_pred HhcC
Confidence 7654
No 52
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=343.16 Aligned_cols=223 Identities=15% Similarity=0.165 Sum_probs=173.2
Q ss_pred cccEEEcceEEEcCCCC-------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccc
Q 022663 11 LNSIKVCGMQFSYEGND-------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFH 83 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~-------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~ 83 (294)
.++|+++||++.|+... ...+|+||||+|.+||++||+|+||||||||+++|+|++.+. +|.+.++|.+...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~-~G~i~~~g~~l~~ 81 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT-GGELYYQGQDLLK 81 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CcEEEECCEEcCc
Confidence 35799999999996311 146899999999999999999999999999999999998876 8999998875432
Q ss_pred cccccccCCcccccccccccccccCcc---cccccccHHHHh-h---cCCC-C---cHHHHHHHHHHcCCC---cccccc
Q 022663 84 DTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-F---GVEG-S---DPVRRERLIELLDID---LQWRMH 149 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~---~~~~-~---~~~~~~~~l~~l~l~---~~~~~~ 149 (294)
..... . ..++..++++++. .+.+.++..+.+ . .... . ..+++.++++.+++. .+++++
T Consensus 82 ~~~~~----~----~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 82 ADPEA----Q----KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred CCHHH----H----HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 11000 0 0011123333332 123333332221 1 0011 1 123456788888884 478999
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+|||||+|||+|||||+.+|++||+||||++||+.++.+++++|.++.++.|.|||+||||+.++.++||+|++|++|++
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998877799999999999999999999999999999
Q ss_pred EecccHHHHHHhh
Q 022663 230 RRAEKLAELDELR 242 (294)
Q Consensus 230 ~~~g~~~~~~~~~ 242 (294)
++.|+.+++.+..
T Consensus 234 ve~g~~~~~~~~p 246 (327)
T PRK11308 234 VEKGTKEQIFNNP 246 (327)
T ss_pred EEECCHHHHhcCC
Confidence 9999999987653
No 53
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=338.63 Aligned_cols=220 Identities=26% Similarity=0.344 Sum_probs=170.6
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|+++||+++|++.. ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~--- 77 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT-SGTVTIGERVITAGKKN--- 77 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence 389999999996421 136999999999999999999999999999999999998886 89999988754210000
Q ss_pred CCcccccccccccccccCcc---cccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq 157 (294)
.. ....+..++++++. .++. .+. +++.++.. ... .+++.++++.+++. .++++.+|||||||
T Consensus 78 ~~----~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 78 KK----LKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMR 152 (290)
T ss_pred ch----HHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHH
Confidence 00 00011223333332 1222 233 33333211 111 13456788889984 47889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++..+||||++|++|+++..|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876668999999999999999999999999999999999888
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+++.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 7643
No 54
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=318.76 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=181.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|.++||.|+|++ ++++++|||+|++||++||+|||||||||.|.+++|++.|+ +|.+.+++.+....+..
T Consensus 2 ~~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d-~G~i~ld~~diT~lPm~--- 74 (243)
T COG1137 2 MSTLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDEDITKLPMH--- 74 (243)
T ss_pred CcEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC-CceEEECCcccccCChH---
Confidence 357999999999976 67999999999999999999999999999999999999997 99999988875432110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHhhcC---CCCc------HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV---EGSD------PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~------~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
..-+..++|.+| ...|..+++++++... ...+ +.+.+.+++.|.+. .+.+..+||||||+|
T Consensus 75 -------~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR 147 (243)
T COG1137 75 -------KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRR 147 (243)
T ss_pred -------HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHH
Confidence 001223455554 5567778877654321 1111 12345788889886 577888999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+.|||||+.+|+++||||||+|.||.+..+|.+++..+. +.|..|+++.|+..+...+|||.+++.+|++..+|+++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 999999999999999999999999999999999998875 5699999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 022663 239 DELRNS 244 (294)
Q Consensus 239 ~~~~~~ 244 (294)
.+++..
T Consensus 227 ~~n~~V 232 (243)
T COG1137 227 VNNEDV 232 (243)
T ss_pred hcChhh
Confidence 877543
No 55
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=336.27 Aligned_cols=211 Identities=27% Similarity=0.348 Sum_probs=166.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~----- 75 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAENEK----- 75 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHH-----
Confidence 7999999999963 246999999999999999999999999999999999998886 89999988653211000
Q ss_pred cccccccccccccccCccc--ccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP--LQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.....++++++.+ .+...+. +++.++.. ... ..++.++++.+++. .++++.+|||||||||+|
T Consensus 76 ------~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~l 149 (274)
T PRK13647 76 ------WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAI 149 (274)
T ss_pred ------HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHH
Confidence 0111233333321 1112233 33333211 111 23456778888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
||||+.+|++|||||||++||+.++.+++++|.+++++ |.|||++|||++++.++||+|++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999998654 89999999999999999999999999999999998654
No 56
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.8e-46 Score=325.30 Aligned_cols=204 Identities=25% Similarity=0.361 Sum_probs=160.0
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...... ....+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~v~~~g~~~~~~~~--~~~~i 74 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPP--KDRDI 74 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCc--ccceE
Confidence 478999999975 47999999999999999999999999999999999998776 8999888865321100 00112
Q ss_pred ccccccccccccccCcccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
.+.++. ..++...+..+ +.+.. .... .+++.++++.+++. .++++.+||||||||++||||
T Consensus 75 ~~~~q~----------~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 75 AMVFQN----------YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEEecC----------hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHH
Confidence 222211 12233334333 22211 1111 22345678888885 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|+.+|++|||||||+|||+.++..++++|.+++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999987656899999999999999999999999999998764
No 57
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.7e-46 Score=330.37 Aligned_cols=221 Identities=23% Similarity=0.266 Sum_probs=168.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++.|+ .|.+.++|.+....... ...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~--~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSL--SQQ 76 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccccc--cch
Confidence 7999999999975 46999999999999999999999999999999999998776 89998887653210000 000
Q ss_pred cccccccccccccccCc-ccccccccHHH-Hhhc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
. .....++..++++++ ..+++..+..+ +.+. ..... ...+.++++.+++. .++++.+|||||||||+|
T Consensus 77 ~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 77 K-GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred h-hHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 0 000011122333333 22333334333 3221 11111 22345678888885 477899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+++..++++++.+.
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998865 489999999999999999999999999999999999887653
No 58
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-46 Score=326.68 Aligned_cols=206 Identities=27% Similarity=0.336 Sum_probs=161.3
Q ss_pred EEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 14 IKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 14 l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
|+++|++++|++.. .+++|+++||+|++|++++|+||||||||||+|+|+|++.|+ +|.+.++|.+... ....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~-----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTG-----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcc-----ccCc
Confidence 47899999996411 146999999999999999999999999999999999998876 8999888764321 0112
Q ss_pred cccccccccccccccCcccccccccHHHH-hhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
+.++++. ..++...+..++ .+.. ... ..+.+.++++.+++. .++++.+||||||||++|||
T Consensus 75 i~~v~q~----------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 75 RGYVFQQ----------DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEEecc----------cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHH
Confidence 2332221 123333343332 2211 111 123456788888885 47789999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee--CCeEEecccH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ--DGELRRAEKL 235 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~--~G~i~~~g~~ 235 (294)
||+.+|++|||||||+|||+.++..++++|.++.++.+.|||++|||++++..+||++++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999998866668999999999999999999999999 7999887664
No 59
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.5e-46 Score=322.45 Aligned_cols=202 Identities=21% Similarity=0.328 Sum_probs=162.0
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.... .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~--~------ 68 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD-SGEITFDGKSYQKN--I------ 68 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCCcccch--H------
Confidence 478999999964 57999999999999999999999999999999999998876 89999888753211 0
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hcC--CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
.....++++++ ..+++..+..+++ +.. ......+..++++.+++. .++++.+|||||||||+|||||+.
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 69 -----EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred -----HHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc
Confidence 01112333333 2233344444432 211 112344567788888885 578899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998865 5899999999999999999999999999987654
No 60
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-46 Score=336.36 Aligned_cols=217 Identities=22% Similarity=0.337 Sum_probs=170.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++...+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~---- 77 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVW---- 77 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHH----
Confidence 3799999999996421245999999999999999999999999999999999998886 89999888654211000
Q ss_pred CcccccccccccccccCccc--ccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
..+..++++++.+ .+...+.. ++.++.. ... .++..++++.+++. .++.+.+|||||+||++
T Consensus 78 -------~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 78 -------DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA 150 (279)
T ss_pred -------HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH
Confidence 0112233333321 22233433 3333211 111 23456788888885 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++|||++++. +||+|++|++|+++..|+++++..
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999999987666899999999999985 799999999999999999988765
Q ss_pred h
Q 022663 241 L 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 230 ~ 230 (279)
T PRK13650 230 R 230 (279)
T ss_pred C
Confidence 4
No 61
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-46 Score=337.83 Aligned_cols=219 Identities=26% Similarity=0.356 Sum_probs=169.3
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
||+++||+++|+... .+.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~--- 76 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EGKVTVGDIVVSSTSKQ--- 76 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence 589999999996321 125999999999999999999999999999999999998886 89999988754210000
Q ss_pred CCcccccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---cccccccCCHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHKVSDGQRRR 158 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkqR 158 (294)
.....++..++++++. .++.....+++.++.. ... ..++.++++.+++. .++.+.+||||||||
T Consensus 77 ----~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 77 ----KEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred ----ccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 0000112233333332 2233222334333321 111 22456778888883 378899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||||++|++|+++..|+++++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998865 489999999999999999999999999999999999987
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
+.
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 65
No 62
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-46 Score=316.22 Aligned_cols=217 Identities=20% Similarity=0.182 Sum_probs=178.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+||+++||+..|+. ..+|++|||++++||+++|+|+||+|||||||+|+|++++. +|.|.+.|.+.......
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~---- 73 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPH---- 73 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHH----
Confidence 58999999999986 57999999999999999999999999999999999998876 89999999876432110
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhh-cCCC-C---cHH-HHHHHHHHcCC-C--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-GVEG-S---DPV-RRERLIELLDI-D--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~---~~~-~~~~~l~~l~l-~--~~~~~~~LSgGqkqRv~l 161 (294)
...+..++++++ -.+|+.+|+++++. +... . ... ..+++.+.|-. . .+++.++|||||||.++|
T Consensus 74 ------~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 74 ------ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred ------HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 001223444554 34677888776653 2211 1 111 14556666653 2 577899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|+|||||.||-|.-.++|.+.|+++.++.|.||++|.++..++.+++||.++|++|+|+..|+.+++...
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999999877688999999999999999999999999999999999998766
Q ss_pred h
Q 022663 242 R 242 (294)
Q Consensus 242 ~ 242 (294)
+
T Consensus 228 ~ 228 (237)
T COG0410 228 P 228 (237)
T ss_pred H
Confidence 4
No 63
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5e-46 Score=328.37 Aligned_cols=215 Identities=23% Similarity=0.310 Sum_probs=167.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...... .
T Consensus 1 ~l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-----~ 71 (240)
T PRK09493 1 MIEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT-SGDLIVDGLKVNDPKV-----D 71 (240)
T ss_pred CEEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCh-----h
Confidence 4889999999975 57999999999999999999999999999999999998776 8999988865321000 0
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
...++..++++++ ..++...+..+ +.+.. .... ...+.++++.+++. .++++.+||||||||++|
T Consensus 72 ----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 72 ----ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred ----HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHH
Confidence 0001112333332 22333334333 22211 1111 22346778888885 478899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||+|||+.++..+.++|.++++ .++|||++|||++++..+||++++|++|+++..|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999999998864 489999999999999999999999999999999998887653
No 64
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-46 Score=333.12 Aligned_cols=215 Identities=21% Similarity=0.319 Sum_probs=169.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
..+|+++||+++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+........
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~-- 78 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA-HGHVWLDGEHIQHYASKE-- 78 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEEhhhCCHHH--
Confidence 457999999999975 46999999999999999999999999999999999998776 889988886432110000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hcC-C------CC---cHHHHHHHHHHcCCC--cccccccCCHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV-E------GS---DPVRRERLIELLDID--LQWRMHKVSDGQR 156 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~------~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqk 156 (294)
....++++++ ..++...+..+++ +.. . .. ......++++.+++. .++++.+||||||
T Consensus 79 ---------~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 149 (265)
T PRK10253 79 ---------VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQR 149 (265)
T ss_pred ---------HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHH
Confidence 0112223322 1222333433322 211 0 00 122456778888885 5788999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
||++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++.++||++++|++|+++..|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999987656899999999999999999999999999999999988
Q ss_pred HHHH
Q 022663 237 ELDE 240 (294)
Q Consensus 237 ~~~~ 240 (294)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 7654
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.3e-46 Score=325.78 Aligned_cols=207 Identities=26% Similarity=0.378 Sum_probs=162.0
Q ss_pred cEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
||+++|++++|++... .++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~------ 73 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEP------ 73 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEEcccCH------
Confidence 4889999999975110 16999999999999999999999999999999999998876 899988886532100
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..++..++++++ ..++...+..+++ +. ..... ..++.++++.+++. .++++.+||||||||++|
T Consensus 74 ------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 147 (218)
T cd03266 74 ------AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAI 147 (218)
T ss_pred ------HHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHH
Confidence 011222333333 2234444443332 21 11111 23456788888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||+.+|++|||||||++||+.++..+.++|.++++ .|.|||+||||++++..+||++++|++|+++..|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999998864 5899999999999999999999999999997653
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.6e-46 Score=340.75 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=171.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+++++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+..... .
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~-~G~i~i~g~~~~~~~-~----- 71 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNP-K----- 71 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCh-H-----
Confidence 5899999999975 57999999999999999999999999999999999998886 899999886542210 0
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
..+..++++++ ..+++.++..+++ +. ..... .++.+++++.+++. .++++..|||||||||+||
T Consensus 72 ------~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 145 (301)
T TIGR03522 72 ------EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA 145 (301)
T ss_pred ------HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHH
Confidence 11223344443 2344555554433 21 11111 23457788889986 5788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|||+.+|++|||||||+|||+.++..+++.|.++. + ++|||++||+++++.++||||++|++|+++..|+++++...
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999874 3 79999999999999999999999999999999999988653
No 67
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-46 Score=334.65 Aligned_cols=216 Identities=25% Similarity=0.334 Sum_probs=169.3
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++ ...+|+|+||+|++||+++|+|+||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~---- 74 (277)
T PRK13652 2 HLIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-SGSVLIRGEPITKENIR---- 74 (277)
T ss_pred ceEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHH----
Confidence 47999999999963 246999999999999999999999999999999999998886 89999888653211000
Q ss_pred CcccccccccccccccCccc--ccccccHH-HHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.....++++++.+ .....+.. ++.+.. ...+ .+...++++.+++. .++.+.+||||||||++
T Consensus 75 -------~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~ 147 (277)
T PRK13652 75 -------EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVA 147 (277)
T ss_pred -------HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH
Confidence 0111223332211 11122333 332211 1112 12356778888885 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++.++||||++|++|+++..|+++++.+
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999999999876568999999999999999999999999999999999988765
Q ss_pred h
Q 022663 241 L 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 228 ~ 228 (277)
T PRK13652 228 Q 228 (277)
T ss_pred C
Confidence 3
No 68
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-46 Score=327.76 Aligned_cols=214 Identities=19% Similarity=0.229 Sum_probs=167.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~--- 74 (241)
T PRK10895 2 ATLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHA--- 74 (241)
T ss_pred ceEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHH---
Confidence 37999999999975 57999999999999999999999999999999999998876 899998886532110000
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC--C-CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--E-GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
..+..++++++ ..++...+..++ .+.. . ... .....++++.+++. .++++.+|||||+|||+
T Consensus 75 -------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 -------RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVE 147 (241)
T ss_pred -------HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHH
Confidence 01112333333 223333444332 2211 1 111 22456778888875 47788999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||++|||++++..+||++++|++|+++..++++++.+
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999999988764 58999999999999999999999999999999999888754
No 69
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-46 Score=330.61 Aligned_cols=215 Identities=16% Similarity=0.192 Sum_probs=167.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++|++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|.+.++|.+........
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~--- 76 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTILLRGQHIEGLPGHQ--- 76 (255)
T ss_pred ceEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-cceEEECCEECCCCCHHH---
Confidence 47999999999975 57999999999999999999999999999999999998876 899998886532110000
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC------------------CCC---cHHHHHHHHHHcCCC--ccc
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV------------------EGS---DPVRRERLIELLDID--LQW 146 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~------------------~~~---~~~~~~~~l~~l~l~--~~~ 146 (294)
..+..++++++ ..++..++..++ .++. ... ......++++.+++. .++
T Consensus 77 -------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 77 -------IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred -------HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 00011222222 223333444332 2210 000 012345667788874 578
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||+++++..+||++++|++
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999998765589999999999999999999999999
Q ss_pred CeEEecccHHHHHH
Q 022663 227 GELRRAEKLAELDE 240 (294)
Q Consensus 227 G~i~~~g~~~~~~~ 240 (294)
|+++..++++++.+
T Consensus 230 g~i~~~~~~~~~~~ 243 (255)
T PRK11300 230 GTPLANGTPEEIRN 243 (255)
T ss_pred CeEEecCCHHHHhh
Confidence 99999999887754
No 70
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-46 Score=342.06 Aligned_cols=223 Identities=16% Similarity=0.222 Sum_probs=169.4
Q ss_pred ccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc---CCCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV---GGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~---~~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||+++|+.. +...+|+||||+|.+||+++|+|+||||||||+++|+|++.+ ..+|.+.++|.+.......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 479999999999521 124699999999999999999999999999999999998763 2378999888754221100
Q ss_pred cccCCcccccccccccccccCccc---ccccccHHH-Hhh---c--CCC----C---cHHHHHHHHHHcCCC-----ccc
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEH-MIF---G--VEG----S---DPVRRERLIELLDID-----LQW 146 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~---~--~~~----~---~~~~~~~~l~~l~l~-----~~~ 146 (294)
... ......++++++.+ +.+.++..+ +.. . ... . ...++.++++.+++. .++
T Consensus 82 ~~~-------~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 82 ERR-------KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred HHH-------HHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 000 00011233333211 222233222 211 1 000 0 123456788888885 367
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
++.+|||||+|||+|||||+.+|++|||||||++||+.++.+++++|.++.++.|.|||+||||++++..+||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999998766699999999999999999999999999
Q ss_pred CeEEecccHHHHHHh
Q 022663 227 GELRRAEKLAELDEL 241 (294)
Q Consensus 227 G~i~~~g~~~~~~~~ 241 (294)
|+|++.|+.+++...
T Consensus 235 G~ive~g~~~~i~~~ 249 (330)
T PRK15093 235 GQTVETAPSKELVTT 249 (330)
T ss_pred CEEEEECCHHHHHhC
Confidence 999999999988764
No 71
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.1e-46 Score=327.04 Aligned_cols=213 Identities=18% Similarity=0.275 Sum_probs=166.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........
T Consensus 1 ~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~--- 73 (242)
T TIGR03411 1 PILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTGLPEHQ--- 73 (242)
T ss_pred CeEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCeecCCCCHHH---
Confidence 36899999999975 46999999999999999999999999999999999998876 899998886432110000
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcCC-----------C---CcHHHHHHHHHHcCCC--cccccccCCH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE-----------G---SDPVRRERLIELLDID--LQWRMHKVSD 153 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-----------~---~~~~~~~~~l~~l~l~--~~~~~~~LSg 153 (294)
.....+++.++ ..+++.++..+++ +... . ....+...+++.+++. .++++.+|||
T Consensus 74 -------~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (242)
T TIGR03411 74 -------IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146 (242)
T ss_pred -------HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence 00112233332 2233444443322 2110 0 0123456778888885 4788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||+|||+|||||+.+|++|||||||+|||+.++..++++|.++.+ +.|||++||+++++.++||++++|++|+++..+
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999998853 689999999999999999999999999999999
Q ss_pred cHHHHHH
Q 022663 234 KLAELDE 240 (294)
Q Consensus 234 ~~~~~~~ 240 (294)
+++++..
T Consensus 225 ~~~~~~~ 231 (242)
T TIGR03411 225 SLDQVQA 231 (242)
T ss_pred CHHHHhc
Confidence 9888754
No 72
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=329.52 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=167.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~-~G~i~~~g~~~~~~~~~----- 72 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPA----- 72 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcccCCHH-----
Confidence 6899999999975 56999999999999999999999999999999999998876 89998887643210000
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcCC--CC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
.+...++++++ ..++...+..++ .+... .. .......+++.+++. .++.+.+|||||||||+||
T Consensus 73 ------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la 146 (258)
T PRK13548 73 ------ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA 146 (258)
T ss_pred ------HhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 01112233332 122233344333 22211 11 123456778888885 4788999999999999999
Q ss_pred HHHc------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 163 MGLL------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 163 raL~------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+ .+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||+|++|++|+++..++++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 9999 5999999999999999999999999999987456899999999999999999999999999999999888
Q ss_pred HHHH
Q 022663 237 ELDE 240 (294)
Q Consensus 237 ~~~~ 240 (294)
++.+
T Consensus 227 ~~~~ 230 (258)
T PRK13548 227 EVLT 230 (258)
T ss_pred HHhC
Confidence 7654
No 73
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-46 Score=334.62 Aligned_cols=218 Identities=22% Similarity=0.253 Sum_probs=170.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++|++ ++.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~-~G~i~i~g~~~~~~~~~---- 76 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-SGRILFDGKPIDYSRKG---- 76 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCEECCCCcch----
Confidence 37999999999963 256999999999999999999999999999999999998876 89999988754210000
Q ss_pred CcccccccccccccccCccc--ccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...++..++++++.+ .....+..+ +.+.. .... ..+...+++.+++. .++++.+|||||+||++
T Consensus 77 -----~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 77 -----LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred -----HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH
Confidence 000112233333321 111223333 32211 1111 23456778888885 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999876668999999999999999999999999999999999988765
Q ss_pred h
Q 022663 241 L 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 3
No 74
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-46 Score=326.59 Aligned_cols=215 Identities=20% Similarity=0.212 Sum_probs=166.1
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~--- 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDITDWQTA--- 75 (237)
T ss_pred ccEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEecCCCCHH---
Confidence 358999999999975 57999999999999999999999999999999999998876 89999888653211000
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-HhhcC--CCC--cHHHHHHHHHHc-CCC--cccccccCCHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS--DPVRRERLIELL-DID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~--~~~~~~~~l~~l-~l~--~~~~~~~LSgGqkqRv~l 161 (294)
......++++++ ..++...+..+ +.+.. ... ......++++.+ ++. .++++.+||||||||++|
T Consensus 76 -------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~l 148 (237)
T PRK11614 76 -------KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAI 148 (237)
T ss_pred -------HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHH
Confidence 001112333332 22333334433 32221 111 112334556666 343 467889999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||||+.+|++|||||||+|||+.++..+.+.|.++++ .|.|||++|||++++.++||++++|++|+++..|+++++..
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999999999998865 48999999999999999999999999999999999988754
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6e-46 Score=326.13 Aligned_cols=212 Identities=20% Similarity=0.255 Sum_probs=165.6
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~----- 71 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHK----- 71 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccCCHhH-----
Confidence 578999999975 46999999999999999999999999999999999998876 899988886432110000
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
..+..++++++ ..++...+..+ +.+.. .... ......+++.+++. .++.+.+||||||||++|||
T Consensus 72 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 72 -----RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred -----HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 00111233332 22333444433 22211 1111 22346778888885 57889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||+.+|++|||||||+|||+.++..+.++|.++++ .+.|||++|||++++..+||++++|++|+++..++.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999999999998865 58999999999999999999999999999999998887653
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-46 Score=321.33 Aligned_cols=198 Identities=22% Similarity=0.332 Sum_probs=155.8
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
+++|++++|++. +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.... .....+.
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~---~~~~~i~ 74 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES-SGSILLNGKPIKAK---ERRKSIG 74 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEhhhH---HhhcceE
Confidence 368999999641 46999999999999999999999999999999999998876 89998888653210 0111222
Q ss_pred cccccccccccccCccc--ccccccHH-HHhhcCC--CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 95 YLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGVE--GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
+ +++.+ .....+.. ++.+... .....++.++++.+++. .++++.+||||||||++|||||+.
T Consensus 75 ~-----------~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 75 Y-----------VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred E-----------EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh
Confidence 2 22211 11122333 3322211 12234567888999885 578899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||++++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999998865 4899999999999999999999999999874
No 77
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=314.75 Aligned_cols=217 Identities=20% Similarity=0.307 Sum_probs=179.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
|++++||+|+|++ +.+++++|++|++|.+++|||||||||||||.+++.++..+ +|.+.++|.+.......
T Consensus 1 MI~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d-~G~i~i~g~~~~~~~s~----- 71 (252)
T COG4604 1 MITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDGLELTSTPSK----- 71 (252)
T ss_pred CeeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc-CceEEEeeeecccCChH-----
Confidence 5899999999986 68999999999999999999999999999999999998887 99999998765432111
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hcC---C-----CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---E-----GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~-----~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.+.+.+....+ ..+...+|++++. |+. . ..++..+.++++.|++. .+++..+||||||||+.
T Consensus 72 ------~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAf 145 (252)
T COG4604 72 ------ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAF 145 (252)
T ss_pred ------HHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhh
Confidence 11111111111 2233445565543 321 1 12344567889999986 48899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||..++++.++++||||.++||..+..++++.|++++++.|+||++|-||++++..|+|+|+.|++|+++..|+++++..
T Consensus 146 IAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred hheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhh
Q 022663 241 LRNS 244 (294)
Q Consensus 241 ~~~~ 244 (294)
....
T Consensus 226 ~~~L 229 (252)
T COG4604 226 PEIL 229 (252)
T ss_pred HHHH
Confidence 5443
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.4e-46 Score=323.00 Aligned_cols=211 Identities=21% Similarity=0.272 Sum_probs=163.0
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++ +++|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+........
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~----- 71 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRFDGRDITGLPPHE----- 71 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCCCCHHH-----
Confidence 578999999975 47999999999999999999999999999999999998876 899998886432110000
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcCC--C--CcHHHHHHHHHHc-CCC--cccccccCCHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--G--SDPVRRERLIELL-DID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~l~~l-~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
..+..++++++ ..++..++..+ +.+... . ........+++.+ ++. .++++.+||||||||++||||
T Consensus 72 -----~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 72 -----RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred -----HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 00112333333 22334444433 322211 1 1122344566666 343 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
|+.+|++|||||||+|||+.++..++++|.++++ .+.|||++|||++++..+||++++|++|+++..++.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999998865 5899999999999999999999999999999988877654
No 79
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-46 Score=331.81 Aligned_cols=224 Identities=22% Similarity=0.271 Sum_probs=172.7
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cC---CCceEEecCCcccccccc
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VG---GRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~---~~g~i~~~~~~~~~~~~~ 87 (294)
.|+++||+..|.... ...+++||||+|.+||++||||+|||||||+.+.|+|+++ +. .+|.+.++|.+.......
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 378999999996421 2469999999999999999999999999999999999986 32 357888888865432111
Q ss_pred cccCCcccccccccccccccCccc---ccccccH-HHH---hhcCCCC--c---HHHHHHHHHHcCCC-----ccccccc
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHM---IFGVEGS--D---PVRRERLIELLDID-----LQWRMHK 150 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~~~--~---~~~~~~~l~~l~l~-----~~~~~~~ 150 (294)
. ....+.+.+++++|.+ +.+-++. .++ +...... . .+++.++++.+++. .+.+|++
T Consensus 81 ~-------~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 81 E-------LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred H-------HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 0 0001112333443322 2222222 111 1111111 1 23456778888885 3789999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||+|||+||.||+.+|++||.||||++||+..+.+++++|+++.++.|.++|+||||+..+.++||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ecccHHHHHHhhh
Q 022663 231 RAEKLAELDELRN 243 (294)
Q Consensus 231 ~~g~~~~~~~~~~ 243 (294)
+.|+.+++++++.
T Consensus 234 E~g~~~~i~~~P~ 246 (316)
T COG0444 234 EEGPVEEIFKNPK 246 (316)
T ss_pred EeCCHHHHhcCCC
Confidence 9999999988754
No 80
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=337.00 Aligned_cols=227 Identities=23% Similarity=0.337 Sum_probs=171.2
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc----
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ---- 86 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~---- 86 (294)
+|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+......
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD-TGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEEeceecccccccccc
Confidence 489999999996421 125999999999999999999999999999999999998886 8999887654311000
Q ss_pred ------ccccC-C-cc-cccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---cc
Q 022663 87 ------LVCSG-D-LS-YLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQ 145 (294)
Q Consensus 87 ------~~~~~-~-~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~ 145 (294)
..... . .. .....++..++++++. .++.....+++.++.. ... ..++.++++.+++. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 00000 0 00 0001123344555442 2232222334433321 111 23456788888984 47
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++.++||||++|+
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 88999999999999999999999999999999999999999999999998864 59999999999999999999999999
Q ss_pred CCeEEecccHHHHHHh
Q 022663 226 DGELRRAEKLAELDEL 241 (294)
Q Consensus 226 ~G~i~~~g~~~~~~~~ 241 (294)
+|+++..|++++++..
T Consensus 240 ~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 240 DGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEECCHHHHhcC
Confidence 9999999999887654
No 81
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-46 Score=334.77 Aligned_cols=221 Identities=21% Similarity=0.296 Sum_probs=170.2
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|+++||+++|++.. .+++|+||||+|++||+++|+||||||||||+|+|+|++.|+ .|.+.++|.+.......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~i~~~~~~--- 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT-TGTVTVDDITITHKTKD--- 77 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence 489999999996311 136999999999999999999999999999999999998886 89999888654211000
Q ss_pred CCcccccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---cccccccCCHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHKVSDGQRRR 158 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkqR 158 (294)
... ..++..++++++. .++.....+++.++.. ... ..++.++++.+++. .++++.+||||||||
T Consensus 78 ~~~----~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (286)
T PRK13646 78 KYI----RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRK 153 (286)
T ss_pred chH----HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 000 0112234444332 1222222233333211 111 23456778888884 367899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||+||||++++..+||||++|++|+++..|+++++
T Consensus 154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999998766689999999999999999999999999999999999887
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 234 ~~~ 236 (286)
T PRK13646 234 FKD 236 (286)
T ss_pred HhC
Confidence 653
No 82
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=329.68 Aligned_cols=212 Identities=22% Similarity=0.351 Sum_probs=166.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----- 72 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ-SGTVFLGDKPISMLSSR----- 72 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CcEEEECCEEhHHCCHH-----
Confidence 6999999999975 57999999999999999999999999999999999998776 88898887643210000
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCC------C----CcHHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE------G----SDPVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~------~----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
.+...++++++ ..++..++..+ +.++.. . ........+++.+++. .++++.+|||||+||
T Consensus 73 ------~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 146 (255)
T PRK11231 73 ------QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQR 146 (255)
T ss_pred ------HHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHH
Confidence 01112222222 12223333333 222210 0 1123456678888885 578899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++.++||++++|++|+++..++++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999999999999999999999998764 489999999999999999999999999999999988876
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
..
T Consensus 226 ~~ 227 (255)
T PRK11231 226 MT 227 (255)
T ss_pred cC
Confidence 53
No 83
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-45 Score=326.77 Aligned_cols=213 Identities=25% Similarity=0.328 Sum_probs=166.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++. +.+|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~------ 71 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT-SGEIFIDGEDIREQDPV------ 71 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCeEcCcCChH------
Confidence 4689999999641 46999999999999999999999999999999999998876 89999888653211000
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC----cccccccCCHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID----LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~l 161 (294)
..+..++++++ ..++...+..+.+ +. ..... .....++++.+++. .++++.+|||||+|||+|
T Consensus 72 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 72 -----ELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV 146 (242)
T ss_pred -----HhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence 01112333333 2233334443332 21 11111 23456778888885 367889999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||+++++..+||+|++|++|+++..++++++.+
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999999999876558999999999999999999999999999999998887754
No 84
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.7e-46 Score=339.26 Aligned_cols=204 Identities=24% Similarity=0.363 Sum_probs=163.3
Q ss_pred EEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc
Q 022663 21 FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW 100 (294)
Q Consensus 21 ~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (294)
++|++ +++|+|+||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+..... ..+
T Consensus 1 k~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~------------~~~ 64 (302)
T TIGR01188 1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREP------------RKV 64 (302)
T ss_pred CeeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCH------------HHH
Confidence 35654 57999999999999999999999999999999999998886 899999886532110 011
Q ss_pred cccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC
Q 022663 101 SKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
+..++++++ ..+++.++..+++ +. ..... .+++.++++.+++. .++++.+|||||||||+|||||+.+|+
T Consensus 65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 144 (302)
T TIGR01188 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144 (302)
T ss_pred HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 223344443 2344555554432 21 11111 23456788899985 578899999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
+|||||||+|||+.++..++++|.++++ .|.|||++||+++++.++||+|++|++|+++..|+++++.+.
T Consensus 145 lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 145 VLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999999999999865 489999999999999999999999999999999999887654
No 85
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6e-46 Score=323.17 Aligned_cols=207 Identities=27% Similarity=0.381 Sum_probs=156.9
Q ss_pred EEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 14 IKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 14 l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
|+++||+++|++.. .+++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~----~ 75 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEK----E 75 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC-ceeEEECCEehhhcchh----H
Confidence 57899999996411 146999999999999999999999999999999999998876 89998888653211000 0
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
. .......++++++ ..++...+..+ +.+.. .... .+.+.++++.+++. .++++.+|||||||||+||
T Consensus 76 ~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 76 L---AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred H---HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 0 0000112333332 22334444433 22221 1111 23456788888885 4788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
|||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||+||||++++. +||++++|++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999999987645899999999999987 9999999999974
No 86
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=329.87 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=168.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~ 89 (294)
++|+++||+++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+. +|.+.++|.........
T Consensus 3 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~-- 77 (262)
T PRK09984 3 TIIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL-- 77 (262)
T ss_pred cEEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc--
Confidence 48999999999975 579999999999999999999999999999999999987752 58999888653211000
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHH-hhcCC--------------CCcHHHHHHHHHHcCCC--cccccccC
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--------------GSDPVRRERLIELLDID--LQWRMHKV 151 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~l~~l~l~--~~~~~~~L 151 (294)
.... ......++++++ ..+++..+..++ .+... .....++.++++.+++. .++.+.+|
T Consensus 78 ~~~~----~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 78 ARDI----RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred chhH----HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 0000 001112333332 223333443332 22210 00123456788888885 57889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+||++++|++|+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999876568999999999999999999999999999999
Q ss_pred cccHHHH
Q 022663 232 AEKLAEL 238 (294)
Q Consensus 232 ~g~~~~~ 238 (294)
.|+++++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 9998875
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=337.35 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=171.9
Q ss_pred cccEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc---
Q 022663 11 LNSIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT--- 85 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~--- 85 (294)
.++|+++||+++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~-~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK-YGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCEEcccccccc
Confidence 35799999999996421 135999999999999999999999999999999999998886 899999886532110
Q ss_pred ccccc---CCcccccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---ccccccc
Q 022663 86 QLVCS---GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHK 150 (294)
Q Consensus 86 ~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~ 150 (294)
..... .... ....++..++++++. .++.....+++.++.. ... ..++.++++.+++. .++.+.+
T Consensus 98 ~~~~~~~~~~~~-~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 98 ELITNPYSKKIK-NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred cccccccccccc-hHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 00000 0000 000122334444442 2333322334433321 111 12446678888884 4778999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||+||||++++..+||+|++|++|+++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998764 5899999999999999999999999999999
Q ss_pred ecccHHHHHHh
Q 022663 231 RAEKLAELDEL 241 (294)
Q Consensus 231 ~~g~~~~~~~~ 241 (294)
..|++++++..
T Consensus 256 ~~g~~~~~~~~ 266 (320)
T PRK13631 256 KTGTPYEIFTD 266 (320)
T ss_pred EeCCHHHHhcC
Confidence 99999887654
No 88
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.7e-45 Score=330.12 Aligned_cols=218 Identities=17% Similarity=0.271 Sum_probs=168.3
Q ss_pred ccEEEcceEEEcCCC------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc
Q 022663 12 NSIKVCGMQFSYEGN------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT 85 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~ 85 (294)
++|+++||+++|++. +..++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGD 81 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCc
Confidence 479999999999631 1246999999999999999999999999999999999998886 899998886532110
Q ss_pred cccccCCcccccccccccccccCccc---ccccccHHHHh-hc--CC-CCc----HHHHHHHHHHcCCC---cccccccC
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FG--VE-GSD----PVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~--~~-~~~----~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
... ....++++++.+ +.+..+..+++ +. .. ... .+.+.++++.+++. .++++.+|
T Consensus 82 ~~~-----------~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (267)
T PRK15112 82 YSY-----------RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML 150 (267)
T ss_pred hhh-----------HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhc
Confidence 000 011122222211 22222332221 11 00 111 23456788888883 36678999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+|||+|||||+.+|++|||||||++||+.++..+.+.|.++.++.|.|||++||+++++..+||++++|++|+++.
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999876568999999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.++++++.+.
T Consensus 231 ~~~~~~~~~~ 240 (267)
T PRK15112 231 RGSTADVLAS 240 (267)
T ss_pred cCCHHHHhcC
Confidence 9998887654
No 89
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-46 Score=329.74 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=161.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.... ...
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~-----~~~ 71 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGP-----GAE 71 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCC-----CCc
Confidence 4899999999975 57999999999999999999999999999999999998876 89998887653210 011
Q ss_pred cccccccccccccccCcccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
+.+.++. ..++...+..+ +.+.. .... ..++.++++.+++. .++++.+|||||||||+|||
T Consensus 72 ~~~v~q~----------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 72 RGVVFQN----------EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEEEeCC----------CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHH
Confidence 2222211 12233334333 22211 1111 23456788888885 47789999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee--CCeEEecccH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ--DGELRRAEKL 235 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~--~G~i~~~g~~ 235 (294)
||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||+||||++++..+||++++|+ +|+++..++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999999865568999999999999999999999998 5999887654
No 90
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=332.12 Aligned_cols=215 Identities=22% Similarity=0.290 Sum_probs=165.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~----- 71 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRG----- 71 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ccEEEECCEEcccccCC-----
Confidence 5899999999975 56999999999999999999999999999999999998886 89999888653210000
Q ss_pred cccccccccccccccCccc--ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP--LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
. ..++..++++++.+ .....+. +++.+.. .... ......+++.+++. .++++.+||||||||++|
T Consensus 72 ~----~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 72 L----LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred H----HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHH
Confidence 0 00111223322211 0111122 2222211 1111 12345678888874 477889999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||+||||++++..+||++++|++|+++..|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999865 489999999999999999999999999999999998887543
No 91
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.6e-46 Score=325.34 Aligned_cols=208 Identities=23% Similarity=0.271 Sum_probs=160.4
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc-----ccCCCceEEecCCccccccccc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-----MVGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~-----~~~~~g~i~~~~~~~~~~~~~~ 88 (294)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ .|. +|.+.++|.+......
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~-~G~i~~~g~~~~~~~~-- 74 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD-EGEVLLDGKDIYDLDV-- 74 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC-CeEEEECCEEhhhcch--
Confidence 578999999975 47999999999999999999999999999999999998 665 8999988865321100
Q ss_pred ccCCcccccccccccccccCcc-cccccccHHHH-hhcC--CC-Cc----HHHHHHHHHHcCCC--cccc--cccCCHHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGV--EG-SD----PVRRERLIELLDID--LQWR--MHKVSDGQ 155 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~-~~----~~~~~~~l~~l~l~--~~~~--~~~LSgGq 155 (294)
. ...++..++++++. .++ ..+..++ .+.. .. .. ..+..++++.+++. .++. +.+|||||
T Consensus 75 ---~----~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 75 ---D----VLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred ---H----HHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHH
Confidence 0 00111223333332 233 3444332 2211 11 11 23456778888885 3455 59999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.++++ . .|||++|||++++..+||++++|++|+++..|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999999999999865 3 8999999999999999999999999999988876
Q ss_pred HH
Q 022663 236 AE 237 (294)
Q Consensus 236 ~~ 237 (294)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 54
No 92
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=350.43 Aligned_cols=225 Identities=25% Similarity=0.334 Sum_probs=178.5
Q ss_pred CcccEEEcceEEEcCCC--------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 10 KLNSIKVCGMQFSYEGN--------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~--------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
..+.++++||++.|... +...+++||||+|.+||++||||+||||||||.|+|+|++.|+ +|.+.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~- 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQD- 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcc-
Confidence 45789999999999731 1245899999999999999999999999999999999999985 9999998876
Q ss_pred cccccccccCCcccccccccccccccCc---ccccccccHHHHhh---cCCC-----CcHHHHHHHHHHcCCC---cccc
Q 022663 82 FHDTQLVCSGDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMIF---GVEG-----SDPVRRERLIELLDID---LQWR 147 (294)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~l~~l~l~---~~~~ 147 (294)
..... +... ..+..+.++++ ..+.+..+..+.+. .... ...+++.++++..++. ++++
T Consensus 355 ~~~~~----~~~~----~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry 426 (539)
T COG1123 355 LDLTG----GELR----RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426 (539)
T ss_pred ccccc----chhh----hhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 21100 0000 01112222222 23445555544331 1111 1123466778888885 5899
Q ss_pred cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
|++|||||||||+|||||+.+|++||+|||||+||+..+.+++++|.++.++.|.|.|+||||+..+..+||||++|++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccHHHHHHhhhh
Q 022663 228 ELRRAEKLAELDELRNS 244 (294)
Q Consensus 228 ~i~~~g~~~~~~~~~~~ 244 (294)
+|++.|+.+++++.+..
T Consensus 507 ~iVE~G~~~~v~~~p~h 523 (539)
T COG1123 507 RIVEEGPTEKVFENPQH 523 (539)
T ss_pred eEEEeCCHHHHhcCCCC
Confidence 99999999999877543
No 93
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=341.72 Aligned_cols=217 Identities=19% Similarity=0.318 Sum_probs=172.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||++ ||+++|++ + .+ |+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... .
T Consensus 1 ~l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~~~~~~~-----~ 68 (352)
T PRK11144 1 MLEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ-KGRIVLNGRVLFDAEK-----G 68 (352)
T ss_pred CeEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccccc-----c
Confidence 4788 99999965 2 33 899999999999999999999999999999998886 8999888865321000 0
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccC
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHP 168 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~ 168 (294)
. ......+.++++++ ..+++.++..++ .++......+++.++++.+++. .++++.+|||||||||+|||||+.+
T Consensus 69 ~--~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 69 I--CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred c--ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 0 00011223444443 334555555443 3433322344567888999985 5789999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhhh
Q 022663 169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRN 243 (294)
Q Consensus 169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 243 (294)
|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||++++|++|+++..|+++++...+.
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 999999999999999999999999999877668999999999999999999999999999999999999876543
No 94
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.1e-45 Score=321.64 Aligned_cols=212 Identities=24% Similarity=0.278 Sum_probs=160.2
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~---- 75 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT-SGSIIFDGKDLLKLSRR---- 75 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccchh----
Confidence 488999999996410 026999999999999999999999999999999999998776 89999888653211000
Q ss_pred CcccccccccccccccCccc---ccccccHHHHh-hcC--C--CCcHH---H-HHHHHHHcCCC---cccccccCCHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FGV--E--GSDPV---R-RERLIELLDID---LQWRMHKVSDGQR 156 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~--~--~~~~~---~-~~~~l~~l~l~---~~~~~~~LSgGqk 156 (294)
....++..++++++.+ +....+..+++ +.. . ..... . ..++++.+++. .++++.+||||||
T Consensus 76 ----~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 76 ----LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQR 151 (228)
T ss_pred ----hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHH
Confidence 0001112233333322 23334443332 211 1 11111 1 13677888873 4778999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|||+|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++|||++++..+||++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999987655899999999999999999999999999987653
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=345.32 Aligned_cols=222 Identities=19% Similarity=0.241 Sum_probs=172.7
Q ss_pred ccEEEcceEEEcCCCCC---------------------CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC
Q 022663 12 NSIKVCGMQFSYEGNDK---------------------PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG 70 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~---------------------~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~ 70 (294)
++|+++||++.|+.... ..+|+|+||+|++||+++|+||||||||||+|+|+|++.|+
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~- 81 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT- 81 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-
Confidence 36999999999975210 12799999999999999999999999999999999999887
Q ss_pred CceEEecCCcccccccccccCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCC
Q 022663 71 RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDI 142 (294)
Q Consensus 71 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l 142 (294)
+|.+.++|.+........ . ....+..++++++ ..+++..+..++ .+.. .... .+++.++++.+++
T Consensus 82 sG~I~i~G~~i~~~~~~~----l---~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL 154 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAE----L---REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGL 154 (400)
T ss_pred CCEEEECCEECCcCCHHH----H---HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 899999887542110000 0 0000112334333 234444554443 3321 1111 2345678888888
Q ss_pred C--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 143 D--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 143 ~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++.++.++|||+||||++++.++||+
T Consensus 155 ~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr 234 (400)
T PRK10070 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234 (400)
T ss_pred ChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCE
Confidence 5 57889999999999999999999999999999999999999999999999998766689999999999999999999
Q ss_pred EEEeeCCeEEecccHHHHHHh
Q 022663 221 LAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 221 v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|++|++|+++..|+++++...
T Consensus 235 i~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 235 IAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred EEEEECCEEEecCCHHHHHhC
Confidence 999999999999999888654
No 96
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.4e-46 Score=322.58 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=156.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+....... .
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~----~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGR----Q 73 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHH----H
Confidence 4899999999952 257999999999999999999999999999999999998776 89998887653211000 0
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
. ..+...++++++ ..++...+..+. .+.. ... ..+++.++++.+++. .++.+.+|||||+|||+||
T Consensus 74 ~----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 74 L----PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred H----HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 0 001112333332 223333343332 2211 111 123456788888885 4678899999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
|||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999764 48999999999999999999999999985
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=324.02 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=162.5
Q ss_pred ccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 12 NSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++|+++||+++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~~-- 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT-SGDVIFNGQPMSKLSSAA-- 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCCHHH--
Confidence 5799999999996421 136999999999999999999999999999999999998776 899999886542110000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.. ......++++++ ..+++.++..+. .+.. .... .+++.++++.+++. .++.+.+||||||||++
T Consensus 81 --~~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~ 155 (233)
T PRK11629 81 --KA---ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVA 155 (233)
T ss_pred --HH---HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 00 000012333333 223334444333 2211 1111 23456788888885 47788999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+ |++++|++|+++..++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999988655689999999999999874 7999999999987765
No 98
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=333.40 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=167.8
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~--- 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGN--- 77 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence 589999999996311 136999999999999999999999999999999999998886 89999988754211000
Q ss_pred CCcccccccccccccccCcc---cccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID---LQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq 157 (294)
... ...+..++++++. .++ ..+..+ +.++. .... ..++.++++.+++. .++++.+|||||||
T Consensus 78 ~~~----~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (287)
T PRK13641 78 KNL----KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMR 152 (287)
T ss_pred chH----HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHH
Confidence 000 0011122333321 122 234333 32211 1111 23456788888884 47889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||+|++|++|+++..|++++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998864 58999999999999999999999999999999999888
Q ss_pred HHH
Q 022663 238 LDE 240 (294)
Q Consensus 238 ~~~ 240 (294)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 754
No 99
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3e-45 Score=337.20 Aligned_cols=227 Identities=17% Similarity=0.196 Sum_probs=172.7
Q ss_pred CCcccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCcccccc
Q 022663 9 EKLNSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDT 85 (294)
Q Consensus 9 ~~~~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~ 85 (294)
...++|+++||++.|+.. +...+|+||||+|++||+++|+|+||||||||+++|+|++.++ .+|.+.++|.+.....
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 445689999999999531 1246999999999999999999999999999999999998774 3789999887643211
Q ss_pred cccccCCcccccccccccccccCcc---cccccccHHH-Hhh---cCCCCc----HHHHHHHHHHcCCC-----cccccc
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEH-MIF---GVEGSD----PVRRERLIELLDID-----LQWRMH 149 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~---~~~~~~----~~~~~~~l~~l~l~-----~~~~~~ 149 (294)
..... ......++++++. .+.+.++..+ +.. ...... ..++.++++.+++. .+++++
T Consensus 88 ~~~~~-------~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 88 EKELN-------KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred HHHHH-------HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 00000 0000123333332 1223333322 211 111111 13445677888874 256899
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+|||||+|||+|||||+.+|++||+||||++||+.++..++++|.++.++.|.|+|+||||++++.++||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999877799999999999999999999999999999
Q ss_pred EecccHHHHHHhh
Q 022663 230 RRAEKLAELDELR 242 (294)
Q Consensus 230 ~~~g~~~~~~~~~ 242 (294)
++.|+.+++.+..
T Consensus 241 ve~g~~~~i~~~p 253 (330)
T PRK09473 241 MEYGNARDVFYQP 253 (330)
T ss_pred EEECCHHHHHhCC
Confidence 9999999987654
No 100
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.7e-45 Score=327.28 Aligned_cols=222 Identities=20% Similarity=0.284 Sum_probs=168.2
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc--cc--cc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT--QL--VC 89 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~--~~--~~ 89 (294)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+..... .. ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID-EGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccccc
Confidence 478999999975 47999999999999999999999999999999999998876 889988886432100 00 00
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHHh-hcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
.... ....++..++++++ ..++...+..+++ +.. .... .....++++.+++. .++.+.+|||||+||
T Consensus 77 ~~~~--~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 77 ADEK--HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred cchh--HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 0000 00011122333333 2233334443322 211 1111 12346678888885 477889999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+||++++|++|++++.|+.+++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998765689999999999999999999999999999999998887
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 235 ~~~ 237 (252)
T TIGR03005 235 FRQ 237 (252)
T ss_pred hcC
Confidence 654
No 101
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.1e-45 Score=342.71 Aligned_cols=210 Identities=20% Similarity=0.241 Sum_probs=167.3
Q ss_pred EcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccccc
Q 022663 22 SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS 101 (294)
Q Consensus 22 ~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (294)
+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......... ....+
T Consensus 2 ~~~~---~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~-~G~I~i~G~~i~~~~~~~~-------~~~rr 70 (363)
T TIGR01186 2 KTGG---KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-AGQIFIDGENIMKQSPVEL-------REVRR 70 (363)
T ss_pred ccCC---ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHHHH-------HHHHh
Confidence 5654 57999999999999999999999999999999999999886 8999999876432110000 00002
Q ss_pred ccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCE
Q 022663 102 KTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKV 171 (294)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~i 171 (294)
..++++++ ..+++.++..+ +.++. .... .+++.++++.+++. .++++.+|||||||||+|||||+.+|++
T Consensus 71 ~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred CcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23444444 34555556544 33321 1222 23456778888885 5889999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 172 LlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||||||++||+.++..+.+.|.++.++.++|||+||||++++.++||+|++|++|+++..|+++++....
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999999999999987666899999999999999999999999999999999999887643
No 102
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-45 Score=321.61 Aligned_cols=209 Identities=26% Similarity=0.384 Sum_probs=163.4
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~-------- 70 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSIRTDR-------- 70 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccch--------
Confidence 5789999999641 146999999999999999999999999999999999998876 899988886532110
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
..+...++++++ ..++...+..++ .+.. .... .++..++++.+++. .++++.+|||||+|||+|||
T Consensus 71 ----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 146 (220)
T cd03263 71 ----KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAI 146 (220)
T ss_pred ----HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 011122333333 223333444332 2211 1111 23456778888885 47788999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
||+.+|++|||||||++||+.++..+.+.|.++++ +.|||++|||++++..+||++++|++|+++..++++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998753 58999999999999999999999999999998887653
No 103
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=319.85 Aligned_cols=201 Identities=20% Similarity=0.307 Sum_probs=158.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|.+.++|.+... .....+
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~----~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDI----AARNRI 72 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCCchhH----HHHccE
Confidence 478999999965 46999999999999999999999999999999999998776 8999988865321 001122
Q ss_pred ccccccccccccccCcccccccccHHHHh-hc--CCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG--VEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
.+.++. ..++...+..+++ +. .... ..+.+.++++.+++. .++++.+||||||||++||||
T Consensus 73 ~~~~q~----------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 73 GYLPEE----------RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EEeccC----------CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHH
Confidence 222211 2233333433322 21 1111 123456778888885 477889999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|+.+|++|||||||+|||+.++..+.+.|.++++ .+.|||++|||++++..+||++++|++|+++..|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998865 4899999999999999999999999999987653
No 104
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.6e-45 Score=326.34 Aligned_cols=218 Identities=22% Similarity=0.253 Sum_probs=167.6
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc-----cccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS-----SFHDTQ 86 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~-----~~~~~~ 86 (294)
++|+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+ ......
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD-AGEVHYRMRDGQLRDLYALSE 80 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCccccccccccCCH
Confidence 47999999999975 47999999999999999999999999999999999998876 8999988875 221100
Q ss_pred cc----ccCCcccccccccccccccCcccccccccHH-HHhh-----cCCC--CcHHHHHHHHHHcCCC---cccccccC
Q 022663 87 LV----CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE-HMIF-----GVEG--SDPVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 87 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
.. ....+.+.++... ..+....+.. ++.+ .... .....+.++++.+++. .++.+.+|
T Consensus 81 ~~~~~~~~~~i~~v~q~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPR--------DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred HHHHHHhhcceEEEeeCcc--------cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 00 0112222222110 0112222221 2211 1111 0123446778888884 36789999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+||++|||||+.+|++|||||||+|||+.++..+++.|.++.++.|.|||++|||++++..+||++++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998876568999999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 233 ~~~~~~~~~~ 242 (258)
T PRK11701 233 SGLTDQVLDD 242 (258)
T ss_pred eCCHHHHhcC
Confidence 9999887654
No 105
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-45 Score=322.01 Aligned_cols=211 Identities=20% Similarity=0.247 Sum_probs=164.2
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|. +|.+.++|.+........
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~----- 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHE----- 71 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHH-----
Confidence 578999999975 47999999999999999999999999999999999998886 899998876432110000
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhcC--CCC-cHHHHHHHHHHcC-CC--cccccccCCHHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGS-DPVRRERLIELLD-ID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~-~~~~~~~~l~~l~-l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
.....++++++ ..++...+..++ .+.. ... ......++++.++ +. .++++.+|||||+||++|||||
T Consensus 72 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 72 -----RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred -----HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 00112333332 223334444332 2221 111 1223456666665 32 5788999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+.+|++|||||||+|||+.++..+.++|.+++++.+.|||++|||++++..+||++++|++|+++..++.+++
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999999998765589999999999999999999999999999999998876
No 106
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.1e-45 Score=329.17 Aligned_cols=219 Identities=19% Similarity=0.331 Sum_probs=169.5
Q ss_pred cEEEcceEEEcCCC------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc
Q 022663 13 SIKVCGMQFSYEGN------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 13 ~l~~~~ls~~y~~~------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~ 86 (294)
+|+++||+++|++. .++.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA-QGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEccccCH
Confidence 68999999999531 1256999999999999999999999999999999999998876 8999988865321100
Q ss_pred ccccCCcccccccccccccccCccc---ccccccHHHHh-hc---CCCC----cHHHHHHHHHHcCCC---cccccccCC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FG---VEGS----DPVRRERLIELLDID---LQWRMHKVS 152 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~---~~~~----~~~~~~~~l~~l~l~---~~~~~~~LS 152 (294)
.. . ..++..++++++.+ +....+..+++ +. .... ...++.++++.+++. .++++.+||
T Consensus 81 ~~----~----~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 152 (265)
T TIGR02769 81 KQ----R----RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLS 152 (265)
T ss_pred HH----H----HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCC
Confidence 00 0 00111233333321 22333443322 11 1111 123456788888884 478899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|.++.++.|.|||+||||++++..+||++++|++|+++..
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 99999999999999999999999999999999999999999998765689999999999999999999999999999999
Q ss_pred ccHHHHHH
Q 022663 233 EKLAELDE 240 (294)
Q Consensus 233 g~~~~~~~ 240 (294)
|+++++..
T Consensus 233 g~~~~~~~ 240 (265)
T TIGR02769 233 CDVAQLLS 240 (265)
T ss_pred CCHHHHcC
Confidence 99988865
No 107
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=325.63 Aligned_cols=216 Identities=21% Similarity=0.224 Sum_probs=166.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.| ..+|.+.++|........
T Consensus 10 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 10 QPQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred ceeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 568999999999975 5699999999999999999999999999999999998864 248999888764321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCCc----HHHHHHHHHHcCCC------cccccccCC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGSD----PVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
. ...++..++++++ ..++. .+.. ++.+.. .... ...+.++++.+++. .++++.+||
T Consensus 87 -----~----~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 156 (258)
T PRK14268 87 -----D----VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLS 156 (258)
T ss_pred -----h----HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCC
Confidence 0 0001122333333 12233 3433 332221 1111 12345677877762 467889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||+|||+|||||+.+|++|||||||+|||+.++..++++|.++. + +.|||++|||++++.++||++++|++|+++..
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999874 3 79999999999999999999999999999999
Q ss_pred ccHHHHHHh
Q 022663 233 EKLAELDEL 241 (294)
Q Consensus 233 g~~~~~~~~ 241 (294)
++++++.+.
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14268 235 GQTRQIFHN 243 (258)
T ss_pred CCHHHHhcC
Confidence 999888654
No 108
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-45 Score=330.25 Aligned_cols=215 Identities=26% Similarity=0.342 Sum_probs=168.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++. .+++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~-~G~i~~~g~~i~~~~~~~--- 78 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWD--- 78 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHH---
Confidence 479999999999631 246999999999999999999999999999999999998886 899999887542211000
Q ss_pred CcccccccccccccccCccc--ccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
....++++++.+ ++...+..+ +.+.. .... ..+..++++.+++. .++.+.+|||||||||+
T Consensus 79 --------~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~ 150 (279)
T PRK13635 79 --------VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA 150 (279)
T ss_pred --------HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence 111233333321 222234333 32221 1111 23456778888885 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++. .||++++|++|+++..|+.+++..
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999987656899999999999997 599999999999999999887754
No 109
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-45 Score=319.47 Aligned_cols=210 Identities=22% Similarity=0.369 Sum_probs=165.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ .. .++||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...... ..
T Consensus 1 ~l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~--~~-- 70 (232)
T PRK10771 1 MLKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPP--SR-- 70 (232)
T ss_pred CeEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCeecCcCCh--hh--
Confidence 4899999999964 22 3999999999999999999999999999999998876 8999988865321100 00
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCC-C-----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE-G-----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
..++++++ ..++...+..+ +.+... . ....++.++++.+++. .++++.+|||||+||++||
T Consensus 71 ---------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 141 (232)
T PRK10771 71 ---------RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA 141 (232)
T ss_pred ---------ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence 11222222 22333334333 322211 1 1123456778888885 5788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||++.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|++++.|+++++...
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998766689999999999999999999999999999999998887654
No 110
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-45 Score=330.38 Aligned_cols=216 Identities=21% Similarity=0.229 Sum_probs=167.0
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
.++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........ ..
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~G~i~i~g~~~~~~~~~~----~~ 97 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKE----LR 97 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccChhh----hh
Confidence 56788888865 57899999999999999999999999999999999998876 899998886532110000 00
Q ss_pred cccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 95 YLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
......++++++ ..++...+..+++ +. ..... .+++.++++.+++. .++.+.+|||||||||+||||
T Consensus 98 ---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAra 174 (269)
T cd03294 98 ---ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARA 174 (269)
T ss_pred ---hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 000112333333 2233344443332 21 11111 23456778888885 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++.++||++++|++|+++..|+++++.+.
T Consensus 175 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999998765689999999999999999999999999999999998887654
No 111
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=324.81 Aligned_cols=214 Identities=22% Similarity=0.242 Sum_probs=167.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++.| ..+|.+.++|.+......
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~- 77 (250)
T PRK14247 2 NKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV- 77 (250)
T ss_pred ceEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH-
Confidence 47999999999975 4699999999999999999999999999999999998864 148899888865321100
Q ss_pred cccCCcccccccccccccccCcc-cccccccHHHHh-hcC--CC--Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMI-FGV--EG--SD----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~--~~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
..++..++++++. .++...+..+++ +.. .. .. .+...++++.+++. .++.+.+|
T Consensus 78 ----------~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 78 ----------IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred ----------HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 0112223333332 233344443332 221 11 01 12345677888863 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++.
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999999874 3 7999999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 226 ~g~~~~~~~~ 235 (250)
T PRK14247 226 WGPTREVFTN 235 (250)
T ss_pred ECCHHHHHcC
Confidence 9999887653
No 112
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.9e-45 Score=318.94 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=153.6
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+... ....+.
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~-----~~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFGKPLEK-----ERKRIG 71 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCccHHH-----HHhheE
Confidence 36899999975 46999999999999999999999999999999999998876 8999888864310 011233
Q ss_pred cccccccccccccCcccccccccHHH-HhhcCCC-------C---cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 95 YLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEG-------S---DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
+.++... .......+..+ +.+.... . ..++...+++.+++. .++++.+||||||||++|
T Consensus 72 ~v~q~~~--------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 143 (213)
T cd03235 72 YVPQRRS--------IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLL 143 (213)
T ss_pred Eeccccc--------cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHH
Confidence 3322110 00001123333 2222110 0 123456778888885 577899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++.++||++++|++| +++.
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 9999999999999999999999999999999999865 5899999999999999999999999886 4443
No 113
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=326.00 Aligned_cols=218 Identities=21% Similarity=0.232 Sum_probs=166.1
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDT 85 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~ 85 (294)
..|+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|++. + ..+|.+.++|.+.....
T Consensus 3 ~~~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 3 SPPKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CCcEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 3568999999999965 469999999999999999999999999999999999863 2 24899998886532100
Q ss_pred cccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
. . ...++..++++++ ..++.....+++.++. ... . .++...+++.+++. .++++.+|
T Consensus 80 ~-----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 150 (253)
T PRK14242 80 V-----D----VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGL 150 (253)
T ss_pred c-----C----HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 0 0 0011122333333 2223322223333221 111 1 23345677777762 36778999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++.++||+|++|++|+++.
T Consensus 151 SgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999884 3 7899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++.+.
T Consensus 229 ~g~~~~~~~~ 238 (253)
T PRK14242 229 VGPTEQIFTR 238 (253)
T ss_pred eCCHHHHHcC
Confidence 9998887654
No 114
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=330.44 Aligned_cols=218 Identities=23% Similarity=0.316 Sum_probs=169.0
Q ss_pred ccEEEcceEEEcCCCC---CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccc
Q 022663 12 NSIKVCGMQFSYEGND---KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~---~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~ 88 (294)
++|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~- 80 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-EGKVYVDGLDTSDEENL- 80 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeccccccH-
Confidence 4799999999996321 246999999999999999999999999999999999998876 89999888654211000
Q ss_pred ccCCcccccccccccccccCccc---ccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkq 157 (294)
...+..++++++.+ ++.....+++.+... ... ...+.++++.+++. .++++.+|||||||
T Consensus 81 ---------~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 151 (280)
T PRK13633 81 ---------WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ 151 (280)
T ss_pred ---------HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence 00112233333221 222112233333211 111 23456778888885 57889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++.. ||++++|++|+++..|++++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999876568999999999999986 99999999999999999988
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+...
T Consensus 231 ~~~~ 234 (280)
T PRK13633 231 IFKE 234 (280)
T ss_pred HhcC
Confidence 7653
No 115
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.3e-46 Score=316.20 Aligned_cols=211 Identities=20% Similarity=0.314 Sum_probs=179.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|++++|+++|+. +.+++|+||++++|++.|++|||||||||.+|+|.|++.|+ .|.|.++|.+....
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~-~G~I~~~g~~~~~~-------- 69 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQE-------- 69 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc-CceEEEcCcchhhh--------
Confidence 6999999999986 67999999999999999999999999999999999999987 99999999764321
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hh--cCCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IF--GVEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
....++|.++ -.+++.++..+- .| .+.+.. ......|++++++. ..+++.+||.|++|++.+.
T Consensus 70 -------~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi 142 (300)
T COG4152 70 -------IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI 142 (300)
T ss_pred -------hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH
Confidence 1234555554 346677776543 22 233333 23457899999985 5778999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
.+++++|+++|||||||||||.+.+.+.+.+.++.. .|.|||++||.|+.++++||++++|++|+.+..|+.+++.+..
T Consensus 143 saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 143 SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999864 6999999999999999999999999999999999999988754
Q ss_pred h
Q 022663 243 N 243 (294)
Q Consensus 243 ~ 243 (294)
.
T Consensus 222 G 222 (300)
T COG4152 222 G 222 (300)
T ss_pred C
Confidence 4
No 116
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=325.06 Aligned_cols=223 Identities=21% Similarity=0.235 Sum_probs=170.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|........ ..+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~--~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRD--KDG 77 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccccc--ccc
Confidence 36999999999975 57999999999999999999999999999999999998876 8999888864321000 000
Q ss_pred Ccccc----cccccccccccCc-ccccccccHHHHh-hc---CCCCc----HHHHHHHHHHcCCC--c-ccccccCCHHH
Q 022663 92 DLSYL----GGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VEGSD----PVRRERLIELLDID--L-QWRMHKVSDGQ 155 (294)
Q Consensus 92 ~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~-~~~~~~LSgGq 155 (294)
.+... ...++..++++++ ..++...+..+++ +. ..... ..+..++++.+++. . ++++.+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 00000 0011223444443 2233344443332 21 11111 23456788888885 2 67889999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
|||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||+||||++++..+||||++|++|++++.|++
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998864 589999999999999999999999999999999998
Q ss_pred HHHHHh
Q 022663 236 AELDEL 241 (294)
Q Consensus 236 ~~~~~~ 241 (294)
+++...
T Consensus 237 ~~~~~~ 242 (257)
T PRK10619 237 EQLFGN 242 (257)
T ss_pred HHhhhC
Confidence 887543
No 117
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-46 Score=302.93 Aligned_cols=229 Identities=21% Similarity=0.265 Sum_probs=180.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++.|+++|+.|+|+. ..+|++||++-.+|+++.|||.|||||||+||||.=+..|+ .|.|.++|....-... ..
T Consensus 4 ~~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~-~G~I~v~geei~~k~~--~~ 77 (256)
T COG4598 4 ENALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-AGSIRVNGEEIRLKRD--KD 77 (256)
T ss_pred ccceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC-CceEEECCeEEEeeeC--CC
Confidence 457999999999986 57999999999999999999999999999999999888886 8898888865421110 01
Q ss_pred CCccccc----ccccccccccCc-ccccccccHHHHhh-------cCCC-CcHHHHHHHHHHcCCC--cccccccCCHHH
Q 022663 91 GDLSYLG----GSWSKTVGSAGE-IPLQGDFSAEHMIF-------GVEG-SDPVRRERLIELLDID--LQWRMHKVSDGQ 155 (294)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGq 155 (294)
+...... +.++...+++++ +.+...++.-++.. +... ...++.+.++...|+. .+.+|..|||||
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchH
Confidence 1111000 112233445544 44555565543321 1111 1123456677788885 578999999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
+||++|||||+.+|+++|+|||||+|||+...++++.+.+++++ |.|+++|||.+.++..++.+|++|++|.|.+.|+|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 99999999999999999999999999999999999999999865 99999999999999999999999999999999999
Q ss_pred HHHHHhhhhhh
Q 022663 236 AELDELRNSTN 246 (294)
Q Consensus 236 ~~~~~~~~~~~ 246 (294)
++++.++.+..
T Consensus 237 ~qvf~nP~S~R 247 (256)
T COG4598 237 EQVFGNPQSPR 247 (256)
T ss_pred HHHhcCCCCHH
Confidence 99998876543
No 118
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=324.58 Aligned_cols=217 Identities=21% Similarity=0.226 Sum_probs=167.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~ 86 (294)
+++|+++||+++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ .+|.+.++|.+......
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 2 KFAIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred cceEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 347999999999975 46999999999999999999999999999999999998763 38999988865321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CCC--c----HHHHHHHHHHcCCC------ccccccc
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS--D----PVRRERLIELLDID------LQWRMHK 150 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~--~----~~~~~~~l~~l~l~------~~~~~~~ 150 (294)
....++..++++++ ..++...+..+ +.+.. ... . .....++++.+++. .++++.+
T Consensus 79 ---------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 149 (253)
T PRK14267 79 ---------DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSN 149 (253)
T ss_pred ---------ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhh
Confidence 00011122333333 22333444433 32221 110 1 12345677777762 4678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||+|++|++|+++
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999885 3 689999999999999999999999999999
Q ss_pred ecccHHHHHHh
Q 022663 231 RAEKLAELDEL 241 (294)
Q Consensus 231 ~~g~~~~~~~~ 241 (294)
..|+++++.+.
T Consensus 228 ~~~~~~~~~~~ 238 (253)
T PRK14267 228 EVGPTRKVFEN 238 (253)
T ss_pred EeCCHHHHHhC
Confidence 99999887643
No 119
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-45 Score=316.26 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=157.4
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +. .|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...... .
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~--~---- 68 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPP--A---- 68 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCcCCH--h----
Confidence 478999999964 22 3999999999999999999999999999999998876 8999888865321100 0
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hcCC---C---CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE---G---SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~---~---~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
...++++++ ..++...+..+++ +... . ....+..++++.+++. .++++.+||||||||++|||
T Consensus 69 -------~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 69 -------DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALAR 141 (211)
T ss_pred -------HccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence 112223222 2233344443332 2221 1 1123456788888885 57889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||+.+|++|||||||+|||+.++..++++|.+++++.+.|||++|||++++..+||++++|++|+++..
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 999999999999999999999999999999998766689999999999999999999999999998765
No 120
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-44 Score=322.48 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=166.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc-----cccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS-----SFHDTQ 86 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~-----~~~~~~ 86 (294)
++|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+ ......
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 2 PLLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-HGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred ceEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEecccccccccccCCH
Confidence 47999999999975 46899999999999999999999999999999999998876 8999888754 211000
Q ss_pred c----cccCCcccccccccccccccCcccccccccHH-HHh-----hcCCC--CcHHHHHHHHHHcCCC---cccccccC
Q 022663 87 L----VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE-HMI-----FGVEG--SDPVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 87 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~--~~~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
. .....+.+..+... ..+....+.. ++. +.... .....+.++++.+++. .++.+.+|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPR--------DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred HHHHHhhhcceEEEEeCcc--------cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc
Confidence 0 00011222221100 0011112221 111 11100 1123456778888884 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||+||||++++..+||++++|++|+++.
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998876668999999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.++++++...
T Consensus 230 ~~~~~~~~~~ 239 (253)
T TIGR02323 230 SGLTDQVLDD 239 (253)
T ss_pred ECCHHHHhcC
Confidence 9998887643
No 121
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=329.25 Aligned_cols=214 Identities=24% Similarity=0.317 Sum_probs=166.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ .+++|+|+||+|.+||+++|+||||||||||+|+|+|++.++ +|.+.++|.+........
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~---- 73 (275)
T PRK13639 1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSL---- 73 (275)
T ss_pred CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEECccccchH----
Confidence 4889999999963 246999999999999999999999999999999999998876 899998886542100000
Q ss_pred cccccccccccccccCccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
..+...++++++.+ ++. .+. +++.++. .... .++..++++.+++. .++++.+|||||+||++
T Consensus 74 -----~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 74 -----LEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVA 147 (275)
T ss_pred -----HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHH
Confidence 00111233333211 122 233 3332221 0111 23456778888885 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999865 48999999999999999999999999999999999988754
No 122
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=327.04 Aligned_cols=217 Identities=25% Similarity=0.308 Sum_probs=168.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 5 ~~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~--- 79 (269)
T PRK13648 5 NSIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFE--- 79 (269)
T ss_pred CceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHH---
Confidence 5689999999999742 235899999999999999999999999999999999998876 89999988653211000
Q ss_pred CCcccccccccccccccCccc--cccccc-HHHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIP--LQGDFS-AEHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
.++..++++++.+ ++...+ .+++.+... ... .+.+..+++.+++. .++++.+|||||+||+
T Consensus 80 --------~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (269)
T PRK13648 80 --------KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV 151 (269)
T ss_pred --------HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH
Confidence 0111223332211 122222 233322211 111 12345678888875 5788999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..+++.|.+++++.|.|||++||+++++.. ||+|++|++|+++..|+++++.
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999876558999999999999985 9999999999999999988875
Q ss_pred Hh
Q 022663 240 EL 241 (294)
Q Consensus 240 ~~ 241 (294)
+.
T Consensus 231 ~~ 232 (269)
T PRK13648 231 DH 232 (269)
T ss_pred cC
Confidence 43
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-45 Score=323.44 Aligned_cols=216 Identities=20% Similarity=0.211 Sum_probs=166.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ .+|.+.++|.+......
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 5 EAIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred CceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 458999999999975 46999999999999999999999999999999999998763 37899888864321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. ..++..++++++ ..++. .+..+ +.++. .. .. .+.+..+++.+++. .++++.+|
T Consensus 82 -----~~----~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 151 (254)
T PRK14273 82 -----DI----LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSL 151 (254)
T ss_pred -----cH----HHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccC
Confidence 00 001122333332 12222 34433 32221 11 11 22345667777751 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..++++|.++. + +.|||++|||++++..+|||+++|++|+++.
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999984 3 7899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 230 ~g~~~~~~~~ 239 (254)
T PRK14273 230 ESSTDELFFN 239 (254)
T ss_pred eCCHHHHHhC
Confidence 9999888654
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-45 Score=328.80 Aligned_cols=217 Identities=23% Similarity=0.304 Sum_probs=168.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCC--ceEEecCCcccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR--DVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~--g~i~~~~~~~~~~~~~~~ 89 (294)
.+|+++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|++.|+.+ |.+.++|.+.......
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~-- 80 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW-- 80 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH--
Confidence 359999999999642 24699999999999999999999999999999999999888632 8998888654211000
Q ss_pred cCCcccccccccccccccCccc--ccccccHHH-HhhcC--CCCcH----HHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSDP----VRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
.....++++++.+ .+...+..+ +.+.. ..... +++.++++.+++. .++++.+|||||+||
T Consensus 81 ---------~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 81 ---------DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred ---------HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence 0111233333321 222334433 33221 11111 2356778888885 578899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++||+++++. +||++++|++|+++..|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987656899999999999985 7999999999999999999887
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 553
No 125
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.4e-45 Score=321.92 Aligned_cols=214 Identities=23% Similarity=0.253 Sum_probs=165.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~~ 88 (294)
+|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|++.|+ .+|.+.++|.+......
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~-- 75 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI-- 75 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--
Confidence 4889999999975 46999999999999999999999999999999999998764 27888888865321000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHH-Hhhc--CCC-Cc----HHHHHHHHHHcCCC------cccccccCCH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEG-SD----PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~-~~----~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
. ....+..++++++ ..++. .+..+ +.+. ... .. .+....+++.+++. .++++.+|||
T Consensus 76 ---~----~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 147 (247)
T TIGR00972 76 ---D----VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG 147 (247)
T ss_pred ---c----hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCH
Confidence 0 0001122333333 22333 34333 3221 111 11 13456678888874 3678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ +.|||+||||++++..+||++++|++|+++..+
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998864 489999999999999999999999999999999
Q ss_pred cHHHHHHh
Q 022663 234 KLAELDEL 241 (294)
Q Consensus 234 ~~~~~~~~ 241 (294)
+++++.+.
T Consensus 226 ~~~~~~~~ 233 (247)
T TIGR00972 226 PTEQIFTN 233 (247)
T ss_pred CHHHHHhC
Confidence 98887653
No 126
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-45 Score=323.14 Aligned_cols=224 Identities=22% Similarity=0.261 Sum_probs=182.2
Q ss_pred ccEEEcceEEEcCCCCC---------------------CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC
Q 022663 12 NSIKVCGMQFSYEGNDK---------------------PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG 70 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~---------------------~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~ 70 (294)
..|+++||++-|+.+.. ..-++|+||+|++|||++|+|-||||||||+|+|.+++.|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 36899999999974210 12467999999999999999999999999999999999997
Q ss_pred CceEEecCCcccccccccccCCcccccccccccccccCc-ccccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCC
Q 022663 71 RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDI 142 (294)
Q Consensus 71 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l 142 (294)
.|.+.++|.+...-... -+....+..++++++ +.+++..+.. +..|+++ +.. .++..++++..++
T Consensus 82 ~G~ilv~g~di~~~~~~-------~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL 154 (386)
T COG4175 82 RGEILVDGKDIAKLSAA-------ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL 154 (386)
T ss_pred CceEEECCcchhcCCHH-------HHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc
Confidence 99999999875431110 011112344555555 5566666654 4456653 222 2345567788888
Q ss_pred C--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 143 D--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 143 ~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
. .+++|++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++.++|||+||||++++.++.||
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 5 68899999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeeCCeEEecccHHHHHHhhh
Q 022663 221 LAYIQDGELRRAEKLAELDELRN 243 (294)
Q Consensus 221 v~~l~~G~i~~~g~~~~~~~~~~ 243 (294)
|.+|++|+|+..|+++++...+.
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred EEEecCCeEEEeCCHHHHHcCcc
Confidence 99999999999999999987654
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-45 Score=322.17 Aligned_cols=217 Identities=23% Similarity=0.342 Sum_probs=166.6
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........ ...
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~-~~~ 76 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPS-DKA 76 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecccccccc-hhh
Confidence 6899999999975 57999999999999999999999999999999999998776 899998886531000000 000
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
. ..++..++++++ ..++...+..+++ +. ..... .....++++.+++. .++.+.+||||||||++|
T Consensus 77 ~----~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 77 I----RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred H----HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 0 001122333333 2233344443332 11 11111 22346677888885 478899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
||||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 9999999999999999999999999999999998754 5899999999999999999999999999999999887753
No 128
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-44 Score=321.21 Aligned_cols=203 Identities=18% Similarity=0.287 Sum_probs=162.3
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.+.+..
T Consensus 3 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~~~~----------- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKL----------- 67 (251)
T ss_pred cEEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCcc-----------
Confidence 47999999999975 46999999999999999999999999999999999998876 8888776521
Q ss_pred CcccccccccccccccCccccccc--ccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGD--FSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
.+.+.++.. .++.. .+..++.........++...+++.+++. .++++.+|||||+|||+|||||+.
T Consensus 68 ~i~~v~q~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 68 RIGYVPQKL----------YLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred CEEEecccc----------ccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 123332211 11111 1222222111112234566788888885 477899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
+|++|||||||+|||+.++..+++.|.++.++.|.|||++|||++++..+||+|++|++ +++..|+++++.+
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999999998765589999999999999999999999965 7889999888754
No 129
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-45 Score=317.93 Aligned_cols=200 Identities=32% Similarity=0.399 Sum_probs=153.7
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
+++|++++|++. .+++|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~------- 71 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVLVDGKDLTKLSLK------- 71 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccCCHH-------
Confidence 368999999641 146999999999999999999999999999999999998876 89998887643211000
Q ss_pred cccccccccccccCccc--ccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 95 YLGGSWSKTVGSAGEIP--LQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
.+...++++++.+ .+...+..++ .+.. .... .....++++.+++. .++++.+|||||||||+|||
T Consensus 72 ----~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 72 ----ELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred ----HHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 0112233333221 1222333332 2211 1111 22456678888885 57889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
||+.+|++|||||||+|||+.++..+++.|.+++++ |.|||++|||++++..+||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999998764 8999999999999999999999999984
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-45 Score=316.96 Aligned_cols=201 Identities=22% Similarity=0.400 Sum_probs=157.9
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ .++|+|+||+|++| +++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~-------- 67 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS-SGTIRIDGQDVLKQP-------- 67 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCCccccch--------
Confidence 578999999965 47999999999999 99999999999999999999998876 899998886532110
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
..+...++++++ ..++...+..++ .+. ..... .+...++++.+++. .++++.+|||||||||+|||
T Consensus 68 ----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 143 (211)
T cd03264 68 ----QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ 143 (211)
T ss_pred ----HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHH
Confidence 011122333332 223333444332 221 11111 23456778888885 47789999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||+.+|++|||||||+|||+.++..+.++|.++++ +.|||++|||++++.++||++++|++|+++..|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998864 589999999999999999999999999998654
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-45 Score=327.26 Aligned_cols=214 Identities=26% Similarity=0.294 Sum_probs=165.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ .|.+.++|.+.......
T Consensus 1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~----- 72 (274)
T PRK13644 1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGDFSKL----- 72 (274)
T ss_pred CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEECCccccH-----
Confidence 4889999999953 246999999999999999999999999999999999998876 89999888653211000
Q ss_pred cccccccccccccccCccc--ccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..+...++++++.+ .+...+.. ++.+... ... .+.+.++++.+++. .++++.+|||||+|||+|
T Consensus 73 -----~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 73 -----QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred -----HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHH
Confidence 00111233333221 12223333 3322211 111 23456678888885 478899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||+|||+.++..+++.|.++.+ .|.|||++|||++++. .||+|++|++|+++..|+++++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999998864 5899999999999985 6999999999999999998887543
No 132
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.8e-45 Score=318.00 Aligned_cols=211 Identities=22% Similarity=0.279 Sum_probs=159.3
Q ss_pred ccEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.........
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~- 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEAR- 82 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeeEEECCEEcccCCHHHH-
Confidence 58999999999964211 25899999999999999999999999999999999998876 8999888764321100000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hc--CCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
. ......++++++ ..++...+..+.+ +. .... ..+++.++++.+++. .++++.+||||||||++
T Consensus 83 ---~---~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 83 ---A---KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred ---H---HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence 0 000012222222 2233333433322 21 1111 123456778888885 47789999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++|||++++. .||++++|++|++++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987666899999999999885 599999999999865
No 133
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.1e-45 Score=318.32 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=158.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+....... .
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~----~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNR----E 73 (222)
T ss_pred CEEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCChh----H
Confidence 4899999999942 257999999999999999999999999999999999998876 89998888643210000 0
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
. ..++..++++++ ..++...+..+ +.+.. .... ...+.++++.+++. .++.+.+||||||||++||
T Consensus 74 ~----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 74 V----PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred H----HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH
Confidence 0 001122333333 12223334333 32221 1111 12345678888875 4778999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||+.+|++|||||||++||+.++..+.+.|.++++ .+.|||++|||++++..+||++++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998865 48999999999999999999999999999854
No 134
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.2e-45 Score=317.40 Aligned_cols=209 Identities=22% Similarity=0.290 Sum_probs=157.7
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+|+++||+++|++.. .+++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~---- 75 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT-SGEVLFNGQSLSKLSSN---- 75 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcCHh----
Confidence 378999999996411 136999999999999999999999999999999999998876 89999887653211000
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
... ......++++++ ..+++..+..+.+ +.. .... .+.+.++++.+++. .++.+.+|||||||||+|
T Consensus 76 ~~~---~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 76 ERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHH---HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 000 000012333333 2233334443332 211 1111 22456778888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
||||+.+|++|||||||+|||+.++..+.+.|.+++++.+.|||++|||++++.. ||++++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999999999999999999999876568999999999999865 7999999999875
No 135
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=325.28 Aligned_cols=214 Identities=24% Similarity=0.282 Sum_probs=165.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC-------CceEEecCCcccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG-------RDVVQVLNRSSFHDT 85 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~-------~g~i~~~~~~~~~~~ 85 (294)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|++.|+. +|.+.++|.+.....
T Consensus 1 ml~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 1 MLTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred CeEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 4899999999975 579999999999999999999999999999999999987752 688888876432100
Q ss_pred cccccCCcccccccccccccccCcc-cccccccHHHH-hhcCC------C-C---cHHHHHHHHHHcCCC--cccccccC
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGVE------G-S---DPVRRERLIELLDID--LQWRMHKV 151 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~------~-~---~~~~~~~~l~~l~l~--~~~~~~~L 151 (294)
.. .+...++++++. ..+...+..++ .+... . . ..+....+++.+++. .++++.+|
T Consensus 78 ~~-----------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 146 (272)
T PRK13547 78 AP-----------RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTL 146 (272)
T ss_pred HH-----------HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccC
Confidence 00 001112222221 11222343332 22210 0 0 122346678888885 57889999
Q ss_pred CHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663 152 SDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 152 SgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~ 222 (294)
||||+|||+|||||+ .+|++|||||||++||+.++..+.++|.++.++.|.|||+||||++++.++||+++
T Consensus 147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999 59999999999999999999999999999876558999999999999999999999
Q ss_pred EeeCCeEEecccHHHHHH
Q 022663 223 YIQDGELRRAEKLAELDE 240 (294)
Q Consensus 223 ~l~~G~i~~~g~~~~~~~ 240 (294)
+|++|+++..++++++..
T Consensus 227 ~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 227 MLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEECCeEEEecCHHHHcC
Confidence 999999999999887754
No 136
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=324.95 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=166.0
Q ss_pred CCCcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccc
Q 022663 8 NEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFH 83 (294)
Q Consensus 8 ~~~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~ 83 (294)
+++.++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.. + ...|.+.++|.+...
T Consensus 16 ~~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CCCCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 445678999999999975 579999999999999999999999999999999999753 2 248899888865321
Q ss_pred cccccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccc
Q 022663 84 DTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMH 149 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~ 149 (294)
... . ...+...++++++ ..++.....+++.+.. ... . ......+++.+++. .++++.
T Consensus 93 ~~~-----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 163 (268)
T PRK14248 93 SNI-----N----VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL 163 (268)
T ss_pred ccc-----c----HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcc
Confidence 000 0 0001112333332 1222222223332221 111 1 12344566666652 367889
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+||||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++..+||++++|++|++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i 241 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDL 241 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998853 68999999999999999999999999999
Q ss_pred EecccHHHHHHh
Q 022663 230 RRAEKLAELDEL 241 (294)
Q Consensus 230 ~~~g~~~~~~~~ 241 (294)
+..++++++...
T Consensus 242 ~~~~~~~~~~~~ 253 (268)
T PRK14248 242 VEYDQTEQIFTS 253 (268)
T ss_pred EEeCCHHHHHhC
Confidence 999999887654
No 137
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=328.07 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=167.1
Q ss_pred ccEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 12 NSIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
..|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~--- 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQTIVGDYAIPANLK--- 80 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccccc---
Confidence 4699999999996521 024999999999999999999999999999999999998876 8999888764321000
Q ss_pred cCCcccccccccccccccCccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC---cccccccCCHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID---LQWRMHKVSDGQR 156 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqk 156 (294)
... ....++..++++++.+ ++. .+. +++.+.. .... ..++.++++.+++. .++++.+||||||
T Consensus 81 --~~~-~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 81 --KIK-EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred --ccc-cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence 000 0000111233333221 112 233 2332221 1111 12345677888883 4778999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||+||||++++.++||++++|++|+++..|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999987656899999999999999999999999999999999988
Q ss_pred HHHHh
Q 022663 237 ELDEL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
++.+.
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 87543
No 138
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-45 Score=326.08 Aligned_cols=218 Identities=23% Similarity=0.286 Sum_probs=168.7
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
+.++|+++|++++|++. ++++|+++||+|++||+++|+||||||||||+++|+|+..|+ +|.+.++|.+.......
T Consensus 4 ~~~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~-- 79 (271)
T PRK13632 4 KSVMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-SGEIKIDGITISKENLK-- 79 (271)
T ss_pred cceEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCcCCHH--
Confidence 44689999999999631 257999999999999999999999999999999999998876 89999888654211000
Q ss_pred cCCcccccccccccccccCccc--ccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
.++..++++++.+ .+...+..+ +.+.. .... .....++++.+++. .++.+.+|||||+||
T Consensus 80 ---------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 150 (271)
T PRK13632 80 ---------EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQR 150 (271)
T ss_pred ---------HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHH
Confidence 0112233333221 222334333 32221 1111 12346678888885 578899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||+|||+.++..++++|.+++++.+.|||++||+++++. +||++++|++|+++..|+++++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999987654589999999999986 7999999999999999988876
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 230 ~~~ 232 (271)
T PRK13632 230 LNN 232 (271)
T ss_pred hcC
Confidence 543
No 139
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.2e-45 Score=317.58 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=156.2
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+....... ..
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~----~~ 73 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT-SGTIRVNGQDVSDLRGR----AI 73 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcccCCHH----HH
Confidence 468999999964 146999999999999999999999999999999999998776 88998887643211000 00
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
..++..++++++ ..+++..+..+ +.+.. .... .++..++++.+++. .++++.+||||||||++|||
T Consensus 74 ----~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 74 ----PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred ----HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence 001122333333 22334344433 22211 1111 23456778888885 47788999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
||+.+|++|||||||++||+.++..+.+.|.++.+ .|.|||++|||++++..+||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998854 489999999999999999999999999974
No 140
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.8e-44 Score=319.07 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=166.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC---CCceEEecCCcccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG---GRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~---~~g~i~~~~~~~~~~~~~~~ 89 (294)
+|+++||+++| + +++|+++||+|.+||+++|+||||||||||+++|+|++.|. .+|.+.++|.+.... . ..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~-~-~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC-A-LR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc-c-cc
Confidence 69999999999 4 46999999999999999999999999999999999998771 388998888653210 0 00
Q ss_pred cCCcccccccccccccccCcccccccccHHHHh-h---cC-CCCcHHHHHHHHHHcCCC-----cccccccCCHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-F---GV-EGSDPVRRERLIELLDID-----LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~l~~l~l~-----~~~~~~~LSgGqkqRv 159 (294)
...+.+.++... ..+.+..+..+.. . .. .....+...++++.+++. .++.+.+|||||+|||
T Consensus 78 ~~~i~~v~q~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPR--------SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCc--------cccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence 112333322110 0011112222211 1 01 111234567788888875 3678899999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||+++++..+||++++|++|+++..++++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987666899999999999999999999999999999999998876
Q ss_pred Hh
Q 022663 240 EL 241 (294)
Q Consensus 240 ~~ 241 (294)
+.
T Consensus 230 ~~ 231 (254)
T PRK10418 230 NA 231 (254)
T ss_pred hC
Confidence 54
No 141
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-45 Score=305.33 Aligned_cols=214 Identities=20% Similarity=0.291 Sum_probs=169.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|||++..+ +.+|+++||++.+||+.+|+||||||||||||.|+|...|+ +|.+.++|.+.......
T Consensus 1 mi~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~-~G~v~~~g~~l~~~~~~----- 71 (259)
T COG4559 1 MIRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPE----- 71 (259)
T ss_pred CeeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC-CCeEeeCCcChhhCCHH-----
Confidence 5899999999876 67999999999999999999999999999999999998887 89999988764321111
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hcCC----CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE----GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+..+..++ ..+...+++.++. ++.. ... ....++++...++. ..+...+|||||||||.
T Consensus 72 ------~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVq 145 (259)
T COG4559 72 ------ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQ 145 (259)
T ss_pred ------HHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHH
Confidence 11111122222 2233345555543 2321 111 12246677777775 46778899999999999
Q ss_pred HHHHHcc------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 161 ICMGLLH------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 161 lAraL~~------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
+||.|++ ++++|+||||||+||..++..++++.++++++ |..|+.|-||++.+..|||||++|++|+++..|+
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCC
Confidence 9999985 44699999999999999999999999999875 7999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 022663 235 LAELDELR 242 (294)
Q Consensus 235 ~~~~~~~~ 242 (294)
+++++..+
T Consensus 225 p~~vlt~E 232 (259)
T COG4559 225 PQDVLTDE 232 (259)
T ss_pred HHHhcCHH
Confidence 99987653
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-44 Score=322.88 Aligned_cols=211 Identities=25% Similarity=0.355 Sum_probs=164.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+........
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~----- 72 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRA----- 72 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEEcccCCHHH-----
Confidence 678999999975 57999999999999999999999999999999999998876 899988886532110000
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcCC--------CC--cHHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--------GS--DPVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--------~~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
....++++++ ..++...+..+ +.++.. .. ...+..++++.+++. .++++.+|||||+||+
T Consensus 73 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 146 (256)
T TIGR03873 73 ------RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV 146 (256)
T ss_pred ------HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 0111222222 11222334333 222110 00 122456678888875 5788999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||+|++|++|+++..|+.+++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 999999999999999999999999999999999998864 4899999999999999999999999999999999988764
Q ss_pred H
Q 022663 240 E 240 (294)
Q Consensus 240 ~ 240 (294)
.
T Consensus 226 ~ 226 (256)
T TIGR03873 226 T 226 (256)
T ss_pred C
Confidence 3
No 143
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=327.15 Aligned_cols=218 Identities=28% Similarity=0.412 Sum_probs=166.1
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~--- 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT-QGSVRVDDTLITSTSKN--- 77 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccc---
Confidence 489999999996421 135999999999999999999999999999999999998886 89999888643210000
Q ss_pred CCcccccccccccccccCcc---cccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID---LQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq 157 (294)
... ..++..++++++. .++. .+. +++.+.. .... .....++++.+++. .++++.+|||||||
T Consensus 78 ~~~----~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 78 KDI----KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR 152 (280)
T ss_pred cCH----HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 000 0011123333322 1222 233 3332211 1111 12345677888884 37789999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++|||||+.+|++|||||||++||+.++..+.+.|.++.+ .+.|||++|||++++..+||++++|++|+++..|++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998865 48999999999999999999999999999999999888
Q ss_pred HHH
Q 022663 238 LDE 240 (294)
Q Consensus 238 ~~~ 240 (294)
+.+
T Consensus 232 ~~~ 234 (280)
T PRK13649 232 IFQ 234 (280)
T ss_pred Hhc
Confidence 754
No 144
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.4e-44 Score=315.76 Aligned_cols=205 Identities=22% Similarity=0.341 Sum_probs=162.7
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+..... ...+
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~~~~~----~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT-SGEIIFDGHPWTRKD----LHKI 72 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeccccc----cccE
Confidence 578999999975 57999999999999999999999999999999999998776 888888876431100 0112
Q ss_pred ccccccccccccccCcccccccccHHHH-hhc--CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccC
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFG--VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHP 168 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~ 168 (294)
.+.++ +..++...+..+. .+. ..........++++.+++. .++.+.+|||||+||++||||++.+
T Consensus 73 ~~~~q----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 73 GSLIE----------SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEEcC----------CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 22211 1122333343332 211 1122344567788889885 5778999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..+++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999998864 48999999999999999999999999999999888653
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.7e-45 Score=316.36 Aligned_cols=202 Identities=25% Similarity=0.320 Sum_probs=156.4
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++ +++|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~------ 70 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKN------ 70 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccchh------
Confidence 478999999975 47999999999999999999999999999999999998876 89999888643210000
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
...+...++++++ ..++...+..+++ +. ..... ..+..++++.+++. .++++.+|||||+||++||
T Consensus 71 ---~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 71 ---INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred ---HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence 0001122333332 2233334433322 21 11111 22346678888885 5788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
|||+.+|++|||||||+|||+.++..+.+.|.++++ .|.|||++|||++++.++||++++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 589999999999999999999999999974
No 146
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=320.48 Aligned_cols=216 Identities=20% Similarity=0.226 Sum_probs=164.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.. |+ .+|.+.++|.+......
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~- 79 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT- 79 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc-
Confidence 47999999999975 469999999999999999999999999999999999853 42 37899888864321000
Q ss_pred cccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
....++..++++++ ..++. .+. +++.+.. .. .. ......+++.+++. .++.+.+||
T Consensus 80 --------~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 150 (252)
T PRK14239 80 --------DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLS 150 (252)
T ss_pred --------chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCC
Confidence 00011122333333 12222 333 3332221 11 11 12344567777752 367889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||||||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++..
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999875 3 68999999999999999999999999999999
Q ss_pred ccHHHHHHhh
Q 022663 233 EKLAELDELR 242 (294)
Q Consensus 233 g~~~~~~~~~ 242 (294)
|+++++.+..
T Consensus 229 g~~~~~~~~~ 238 (252)
T PRK14239 229 NDTKQMFMNP 238 (252)
T ss_pred CCHHHHHhCC
Confidence 9998886543
No 147
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=324.33 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=166.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
+++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.| ..+|.+.++|.+......
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 468999999999975 5799999999999999999999999999999999998864 248999988865321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CCC--c----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EGS--D----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. ..++..++++++ ..++.....+++.+.. ... . ..++..+++.+++. .++++.+|
T Consensus 94 -----~~----~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 164 (267)
T PRK14235 94 -----DV----VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL 164 (267)
T ss_pred -----ch----HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 00 011122333332 2223222223333221 111 1 22346678888873 35678999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++..+||++++|++|+++.
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 6899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 243 ~g~~~~~~~~ 252 (267)
T PRK14235 243 VGDTEKMFTN 252 (267)
T ss_pred eCCHHHHHhC
Confidence 9998887643
No 148
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=321.72 Aligned_cols=216 Identities=22% Similarity=0.213 Sum_probs=165.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~ 86 (294)
..+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++. | ..+|.+.++|.+......
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999975 469999999999999999999999999999999999875 2 247999888865321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHH-HHhhcCC---CCc----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE---GSD----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~---~~~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
....++..++++++ ..++. .+.. ++.+... ... .++..++++.+++. .++++.+|
T Consensus 88 ---------~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 157 (260)
T PRK10744 88 ---------DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSL 157 (260)
T ss_pred ---------chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCC
Confidence 00011122333332 12223 3333 3322211 111 13456677888762 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||++++|++|+++.
T Consensus 158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999884 3 6899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+.+++.+.
T Consensus 236 ~g~~~~~~~~ 245 (260)
T PRK10744 236 FGNTDTIFTK 245 (260)
T ss_pred eCCHHHHHhC
Confidence 9999887654
No 149
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=324.75 Aligned_cols=216 Identities=20% Similarity=0.282 Sum_probs=167.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++....++|+|+||+|.+||+++|+|+||||||||+++|+|++.|. +|.+.++|.+.......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~----- 77 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF-EGKVKIDGELLTAENVW----- 77 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEECCcCCHH-----
Confidence 799999999997421235999999999999999999999999999999999998876 89999988653211000
Q ss_pred cccccccccccccccCccc--ccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP--LQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.....++++++.+ .+...+. +++.++.. ... .+++..+++.+++. .++++.+|||||+||++|
T Consensus 78 ------~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (277)
T PRK13642 78 ------NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAV 151 (277)
T ss_pred ------HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 0112233333321 1222333 33332211 111 12346677888874 577899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||++||+.++..+++.|.+++++.|.|||++|||++++. .||+|++|++|+++..|+++++...
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999987666899999999999997 5999999999999999999887653
No 150
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=319.22 Aligned_cols=212 Identities=21% Similarity=0.252 Sum_probs=165.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ ..+|.+.++|.+.......
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~--- 75 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV--- 75 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH---
Confidence 6899999999975 5799999999999999999999999999999999998742 2489999988754211000
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-Hhhc--CCCC------cHHHHHHHHHHcCCC------cccccccCCHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEGS------DPVRRERLIELLDID------LQWRMHKVSDG 154 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~------~~~~~~~~l~~l~l~------~~~~~~~LSgG 154 (294)
..+..++++++ ..++. .+..+ +.+. .... ...+...+++.+++. .++++.+||||
T Consensus 76 --------~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 146 (246)
T PRK14269 76 --------ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGG 146 (246)
T ss_pred --------HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHH
Confidence 01122333333 22233 23333 3222 1111 112345678888873 36678999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|+|||+|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||++++|++|+++..|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999874 3 8999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 022663 235 LAELDEL 241 (294)
Q Consensus 235 ~~~~~~~ 241 (294)
.+++...
T Consensus 225 ~~~~~~~ 231 (246)
T PRK14269 225 SKEFFEN 231 (246)
T ss_pred HHHHHhC
Confidence 8887653
No 151
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=321.53 Aligned_cols=221 Identities=21% Similarity=0.287 Sum_probs=168.1
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC----CceEEecCCcccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG----RDVVQVLNRSSFHDT 85 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~----~g~i~~~~~~~~~~~ 85 (294)
..++|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|++.|++ .|.+.++|.+.....
T Consensus 4 ~~~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 4 LIPAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred ccceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 3457999999999965 469999999999999999999999999999999999987642 577777775431100
Q ss_pred cccccCCcccccccccccccccCc-ccccccccHH-HHhhc--CCCC-c----HHHHHHHHHHcCCC------ccccccc
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFG--VEGS-D----PVRRERLIELLDID------LQWRMHK 150 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~~~~~ 150 (294)
. .. ..++..++++++ ..++. .+.. ++.+. .... . .....++++.+++. .++++.+
T Consensus 81 ~-----~~----~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 150 (261)
T PRK14258 81 V-----NL----NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALD 150 (261)
T ss_pred c-----ch----HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence 0 00 001112333322 22333 3433 33221 1111 1 22345677777762 3677899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC----
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD---- 226 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~---- 226 (294)
|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++.+.|||+||||++++.++||+|++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~ 230 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENR 230 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCc
Confidence 9999999999999999999999999999999999999999999988655689999999999999999999999999
Q ss_pred -CeEEecccHHHHHHhhh
Q 022663 227 -GELRRAEKLAELDELRN 243 (294)
Q Consensus 227 -G~i~~~g~~~~~~~~~~ 243 (294)
|+++..++++++.+.+.
T Consensus 231 ~G~i~~~~~~~~~~~~~~ 248 (261)
T PRK14258 231 IGQLVEFGLTKKIFNSPH 248 (261)
T ss_pred CceEEEeCCHHHHHhCCC
Confidence 99999999999876543
No 152
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.3e-44 Score=324.58 Aligned_cols=220 Identities=19% Similarity=0.312 Sum_probs=168.4
Q ss_pred ccEEEcceEEEcCCC------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc
Q 022663 12 NSIKVCGMQFSYEGN------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT 85 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~ 85 (294)
++|+++||+++|++. .++++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLN 80 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEeccccC
Confidence 479999999999620 0257999999999999999999999999999999999998876 899998886432110
Q ss_pred cccccCCcccccccccccccccCccc---ccccccHHHHh-hc---CCCC----cHHHHHHHHHHcCCC---cccccccC
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FG---VEGS----DPVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~---~~~~----~~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
... . ...+..++++++.+ +....+..+++ +. .... ......++++.+++. .++.+.+|
T Consensus 81 ~~~----~----~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 152 (268)
T PRK10419 81 RAQ----R----KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQL 152 (268)
T ss_pred hhH----H----HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccC
Confidence 000 0 00111222222211 22223333322 11 1111 122456788888884 47789999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+||++|||||+.+|++|||||||+|||+.++..+.++|.+++++.+.|||++|||++++..+||++++|++|+++.
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999876668999999999999999999999999999999
Q ss_pred cccHHHHHH
Q 022663 232 AEKLAELDE 240 (294)
Q Consensus 232 ~g~~~~~~~ 240 (294)
.|+++++..
T Consensus 233 ~g~~~~~~~ 241 (268)
T PRK10419 233 TQPVGDKLT 241 (268)
T ss_pred eCChhhccC
Confidence 999888754
No 153
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=321.30 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=165.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC---cccC-CCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK---HMVG-GRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~---~~~~-~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ +++. .+|.+.++|.+......
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~- 77 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV- 77 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc-
Confidence 57999999999975 4699999999999999999999999999999999996 3332 37899988865421100
Q ss_pred cccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
.. ..++..++++++ ..++. .+. +++.++. ... . .....++++.+++. .++++.+||
T Consensus 78 ----~~----~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 148 (250)
T PRK14245 78 ----QV----DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALS 148 (250)
T ss_pred ----cH----HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCC
Confidence 00 011122333333 12222 233 3332221 111 1 12345677878763 367788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||||||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||+||||++++..+||++++|++|+++..
T Consensus 149 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999884 3 78999999999999999999999999999999
Q ss_pred ccHHHHHHhh
Q 022663 233 EKLAELDELR 242 (294)
Q Consensus 233 g~~~~~~~~~ 242 (294)
|+++++.+..
T Consensus 227 ~~~~~~~~~~ 236 (250)
T PRK14245 227 DDTKKIFTNP 236 (250)
T ss_pred CCHHHHhcCC
Confidence 9999886543
No 154
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=321.15 Aligned_cols=218 Identities=21% Similarity=0.231 Sum_probs=166.1
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCcccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDT 85 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~ 85 (294)
++++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|++. |+ .+|.+.++|.+.....
T Consensus 9 ~~~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CCceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 4568999999999975 469999999999999999999999999999999999876 32 3789988886532100
Q ss_pred cccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
. .. ..++..++++++ ..++.....+++.+.. .. .. ..++.++++.+++. .++++.+|
T Consensus 86 ~-----~~----~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L 156 (259)
T PRK14274 86 V-----DL----VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSL 156 (259)
T ss_pred c-----CH----HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 0 00 001122333332 1222222223332221 11 11 12345567777762 36788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||+||||++++.++||++++|++|+++.
T Consensus 157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 3 6899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 235 ~g~~~~~~~~ 244 (259)
T PRK14274 235 CNDTNKMFSN 244 (259)
T ss_pred ECCHHHHhhC
Confidence 9999988654
No 155
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.7e-44 Score=318.97 Aligned_cols=211 Identities=21% Similarity=0.192 Sum_probs=160.2
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccccccC
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++ .|+ +|.+.++|.+.........
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~-- 74 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT-SGTILFKGQDLLELEPDER-- 74 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-cceEEECCEecCCCCHHHh--
Confidence 578999999975 46999999999999999999999999999999999985 454 8999988865321100000
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hc---CC------CCc----HHHHHHHHHHcCCC---cccccc-cCC
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VE------GSD----PVRRERLIELLDID---LQWRMH-KVS 152 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~------~~~----~~~~~~~l~~l~l~---~~~~~~-~LS 152 (294)
....++++++ ..+++..+..+++ +. .. ..+ .++..++++.+++. .++.+. +||
T Consensus 75 --------~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 146 (243)
T TIGR01978 75 --------ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFS 146 (243)
T ss_pred --------hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcC
Confidence 0011222222 2233333333322 11 00 001 13456678888884 356676 599
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEEe
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELRR 231 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~ 231 (294)
|||||||+|||||+.+|++|||||||++||+.++..+.++|.++.+ .|.|||+||||++++..+ ||++++|++|+++.
T Consensus 147 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999864 589999999999999998 89999999999999
Q ss_pred cccHHHHH
Q 022663 232 AEKLAELD 239 (294)
Q Consensus 232 ~g~~~~~~ 239 (294)
.|+++++.
T Consensus 226 ~g~~~~~~ 233 (243)
T TIGR01978 226 SGDVELAK 233 (243)
T ss_pred ecCHHHhc
Confidence 99887543
No 156
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-44 Score=343.46 Aligned_cols=225 Identities=24% Similarity=0.304 Sum_probs=173.5
Q ss_pred ccEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC---CceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG---RDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~---~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||++.|..... ..+++||||+|.+||++||+|+|||||||+.++|.|++++.+ +|.+.++|.+.......
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 38999999999965322 259999999999999999999999999999999999987653 78998888754321110
Q ss_pred cccCCcccccccccccccccCccc---ccccccHHH----HhhcCC-CCc---HHHHHHHHHHcCCC--c--ccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEH----MIFGVE-GSD---PVRRERLIELLDID--L--QWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~-~~~---~~~~~~~l~~l~l~--~--~~~~~~LS 152 (294)
.. .......+++++|.+ +-+.++..+ ...... ... ..+..++++.+++. . +++|++||
T Consensus 84 ~~-------r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLS 156 (539)
T COG1123 84 EM-------RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLS 156 (539)
T ss_pred HH-------HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccC
Confidence 00 001112333333321 112222221 111111 111 23445677777874 2 35999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||||||+||+||+.+|++||+||||++||+..+.+|+++|++++++.|.++|+||||+..+.++||||++|++|++++.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhh
Q 022663 233 EKLAELDELRN 243 (294)
Q Consensus 233 g~~~~~~~~~~ 243 (294)
|+++++++.+.
T Consensus 237 G~~~~i~~~p~ 247 (539)
T COG1123 237 GPTEEILSNPQ 247 (539)
T ss_pred cCHHHHHhccC
Confidence 99999988754
No 157
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3.4e-44 Score=311.28 Aligned_cols=202 Identities=24% Similarity=0.416 Sum_probs=159.5
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
++++||+++|+. ++.|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------- 67 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-SGSIKVNDQSHTGLAP------- 67 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEcccCCh-------
Confidence 468999999953 468999999999999999999999999999999998886 8999988865321100
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcCC-C-----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE-G-----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
....++++++ ..++...+..+ +.+... . ....+..++++.+++. .++.+.+|||||+||++|||
T Consensus 68 ------~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 141 (213)
T TIGR01277 68 ------YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALAR 141 (213)
T ss_pred ------hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHH
Confidence 1112333332 22334444433 322211 1 1123456688888885 57889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
||+.+|++|||||||++||+.++..+.++|.++.++.+.|||+|||+++++..+||++++|++|+++..|+
T Consensus 142 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 142 CLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999876568999999999999999999999999999988764
No 158
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.8e-44 Score=334.10 Aligned_cols=212 Identities=23% Similarity=0.345 Sum_probs=166.7
Q ss_pred ceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccc
Q 022663 18 GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLG 97 (294)
Q Consensus 18 ~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (294)
||+++|++ .. + ++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... .. ..
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~i~~~~~-----~~--~~ 70 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-EGEIVLNGRTLFDSRK-----GI--FL 70 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccCcc-----cc--cc
Confidence 79999965 33 5 999999999999999999999999999999998886 8999988865421100 00 00
Q ss_pred ccccccccccCc-ccccccccHHHH-hhcCCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCC
Q 022663 98 GSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPF 169 (294)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p 169 (294)
...+..++++++ ..+++.++..++ .++.... ...+..++++.+++. .++++.+|||||||||+|||||+.+|
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred chhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 011223344433 334455555443 3332211 123457788888885 58889999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||++++|++|+++..|+++++....
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999987666899999999999999999999999999999999998887654
No 159
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=320.61 Aligned_cols=217 Identities=19% Similarity=0.185 Sum_probs=165.1
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ +.+|.+.++|.+......
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 458999999999975 4699999999999999999999999999999999998763 248899888765321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CCCc---HHHHHHHHHHcCCC------cccccccCCH
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD---PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~---~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
. ...++..++++++ ..++.. +..+ +.+.. .... .+...++++.+++. .++++.+|||
T Consensus 88 -----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 157 (269)
T PRK14259 88 -----D----PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSG 157 (269)
T ss_pred -----C----HHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCH
Confidence 0 0011122333333 222332 4333 32221 1111 22345567777652 4678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC-------
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD------- 226 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~------- 226 (294)
||||||+|||||+.+|++|||||||+|||+.++..++++|.+++ + +.|||++|||++++..+||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999874 3 68999999999999999999999996
Q ss_pred ----CeEEecccHHHHHHhh
Q 022663 227 ----GELRRAEKLAELDELR 242 (294)
Q Consensus 227 ----G~i~~~g~~~~~~~~~ 242 (294)
|++++.|+++++.+..
T Consensus 236 ~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred ccccceEEEeCCHHHHHhCc
Confidence 6789999999887643
No 160
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-44 Score=315.78 Aligned_cols=211 Identities=25% Similarity=0.306 Sum_probs=166.5
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|. .|.+.++|.+...... ...
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~--~~~-- 72 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPP--HKR-- 72 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCCh--hhc--
Confidence 468999999975 57999999999999999999999999999999999998876 8889888864321100 011
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
.++++++ ..++...+..++ .+.. .... ......+++.+++. .++.+.+||+||+||++|||
T Consensus 73 ---------~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar 143 (232)
T cd03300 73 ---------PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIAR 143 (232)
T ss_pred ---------ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1222222 223333343332 2211 1111 23456778888885 57788999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||+.+|++|||||||+|||+.++..+.+.|.++.++.|.|||++||+++++..+||++++|++|++...++.+++...
T Consensus 144 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 144 ALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999999998765589999999999999999999999999999999988776543
No 161
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=319.38 Aligned_cols=215 Identities=23% Similarity=0.253 Sum_probs=164.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~~ 88 (294)
+|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|++.|+ .+|.+.++|.+......
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~-- 78 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV-- 78 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--
Confidence 6999999999975 46999999999999999999999999999999999988641 48999988865321000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCCH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
. ...++..++++++ ..++...+..++ .+.. ... . .+.+.++++.+++. .++.+.+|||
T Consensus 79 ---~----~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (258)
T PRK14241 79 ---D----PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG 151 (258)
T ss_pred ---C----hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 0 0011122333332 223333344332 2211 111 1 12345677778762 4677899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee------CC
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ------DG 227 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~------~G 227 (294)
||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++ + +.|||++|||++++.++||++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCc
Confidence 99999999999999999999999999999999999999999884 3 6899999999999999999999997 79
Q ss_pred eEEecccHHHHHHh
Q 022663 228 ELRRAEKLAELDEL 241 (294)
Q Consensus 228 ~i~~~g~~~~~~~~ 241 (294)
++++.|+++++...
T Consensus 230 ~i~~~~~~~~~~~~ 243 (258)
T PRK14241 230 RLVEIDDTEKIFSN 243 (258)
T ss_pred eEEecCCHHHHHhC
Confidence 99999999888654
No 162
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=314.37 Aligned_cols=192 Identities=22% Similarity=0.248 Sum_probs=167.7
Q ss_pred cccEEEcceEEEcCCCC----C--CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc
Q 022663 11 LNSIKVCGMQFSYEGND----K--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD 84 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~----~--~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~ 84 (294)
+++++++||++.|.... . ..+++||||+|++||++||||+||||||||-|+|+|++.|+ +|.|.+.|.+....
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~ 80 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKL 80 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhc
Confidence 35899999999996421 1 36899999999999999999999999999999999999987 89998887653110
Q ss_pred ccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHH
Q 022663 85 TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~l 161 (294)
.. ....+++.++++.+++. +++++++|||||+||++|
T Consensus 81 --------------------------------~~--------~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 81 --------------------------------SK--------EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred --------------------------------ch--------hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 00 01124567788888875 579999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|+++++|||+|+||...+.+++++|.++.++.|.|.++||||+..+..+||||++|..|+|++.|+.++++..
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hh
Q 022663 242 RN 243 (294)
Q Consensus 242 ~~ 243 (294)
+.
T Consensus 201 p~ 202 (268)
T COG4608 201 PL 202 (268)
T ss_pred CC
Confidence 44
No 163
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-44 Score=349.32 Aligned_cols=215 Identities=21% Similarity=0.315 Sum_probs=170.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+|+|+|++.|+ +|.+.++|.+........
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~-- 82 (510)
T PRK15439 9 PPLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAK-- 82 (510)
T ss_pred CceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHH--
Confidence 358999999999975 57999999999999999999999999999999999998876 899988876432110000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hcCCCC--cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGS--DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
.....++++++ ..++..++..+++ +..... ..++..++++.+++. .++++.+|||||||||+||||
T Consensus 83 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 83 --------AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred --------HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 00012333333 2234445554433 332211 124556788888885 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|+.+|++|||||||+|||+.++..+.++|.++++ .|.|||+||||++++..+||+|++|++|+++..|+++++..
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999999999865 48999999999999999999999999999999999887643
No 164
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.8e-44 Score=305.24 Aligned_cols=177 Identities=26% Similarity=0.438 Sum_probs=145.3
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
+++|++++|++ +++|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+......
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~-------- 68 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSP-------- 68 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCH--------
Confidence 46899999975 46999999999999999999999999999999999998776 8888887754211000
Q ss_pred cccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 95 YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
..+...++++ .++++.+++. .++.+.+|||||+||++|||||+.+|++|
T Consensus 69 ---~~~~~~i~~~--------------------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 69 ---KELARKIAYV--------------------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred ---HHHHHHHhHH--------------------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 0000001100 1156666664 46778999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||||||++||+.++..+.+.|.++.++.+.|+|++||+++++.++||++++|++|+++..
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999988654478999999999999999999999999998754
No 165
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-44 Score=316.93 Aligned_cols=216 Identities=21% Similarity=0.216 Sum_probs=166.1
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+..| ..+|.+.++|.+......
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 2 KIKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred ccEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 368999999999975 4699999999999999999999999999999999998764 147899988865421100
Q ss_pred ccccCCcccccccccccccccCcc-cccccccHH-HHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
. . ......++++++. .++. .+.. ++.+.. ... . ..+..++++.+++. .++++.+|
T Consensus 79 ~-----~----~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 148 (251)
T PRK14270 79 D-----V----VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKL 148 (251)
T ss_pred c-----H----HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence 0 0 0011223333331 2233 3433 332221 111 1 12345677888762 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++..+||++++|++|+++.
T Consensus 149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998754 5899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.++++++...
T Consensus 227 ~~~~~~~~~~ 236 (251)
T PRK14270 227 FNKTEKIFLE 236 (251)
T ss_pred eCCHHHHhcC
Confidence 9999887654
No 166
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.8e-44 Score=314.13 Aligned_cols=212 Identities=24% Similarity=0.315 Sum_probs=157.7
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~------ 72 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLALADPA------ 72 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCeehHhcCHH------
Confidence 4789999999642 246999999999999999999999999999999999998876 89999888653211000
Q ss_pred ccccccccccccccCcccccccccHHHHh-hcCCCCcHHHHH---------HHHHHc--CCC--cccccccCCHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRE---------RLIELL--DID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~LSgGqkqRv 159 (294)
.++..++++++.+.....+..+++ +........... .+++.+ ++. .++++.+|||||||||
T Consensus 73 -----~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv 147 (237)
T cd03252 73 -----WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI 147 (237)
T ss_pred -----HHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence 011123333332111123433332 221111111111 223333 222 3567899999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||++||+.++..+.+.|.++. + |.|||++|||++++. .||++++|++|+++..++++++.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 3 899999999999996 69999999999999999988876
Q ss_pred Hh
Q 022663 240 EL 241 (294)
Q Consensus 240 ~~ 241 (294)
+.
T Consensus 225 ~~ 226 (237)
T cd03252 225 AE 226 (237)
T ss_pred hc
Confidence 54
No 167
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-44 Score=316.29 Aligned_cols=216 Identities=18% Similarity=0.222 Sum_probs=165.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~~~~ 88 (294)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++. |+ .+|.+.++|.+......
T Consensus 4 ~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~-- 78 (252)
T PRK14256 4 KVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV-- 78 (252)
T ss_pred EEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC--
Confidence 5999999999975 469999999999999999999999999999999999875 32 37889988865421000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCCH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
.. ..++..++++++ ..++...+..+ +.+.. .. .. .+...++++.+++. .++.+.+|||
T Consensus 79 ---~~----~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14256 79 ---DP----VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG 151 (252)
T ss_pred ---Ch----HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence 00 001122333333 22333344333 32211 11 11 12345677777763 3567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||+||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999853 589999999999999999999999999999999
Q ss_pred cHHHHHHhh
Q 022663 234 KLAELDELR 242 (294)
Q Consensus 234 ~~~~~~~~~ 242 (294)
+++++....
T Consensus 230 ~~~~~~~~~ 238 (252)
T PRK14256 230 ETKKIFTTP 238 (252)
T ss_pred CHHHHHhCC
Confidence 998876543
No 168
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-44 Score=321.17 Aligned_cols=211 Identities=20% Similarity=0.294 Sum_probs=162.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.... .....
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~---~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQA---LQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEhHHh---hccce
Confidence 6999999999963 257999999999999999999999999999999999998886 89999888653210 00112
Q ss_pred cccccccccccccccCcccccccccHHHHhh-c------C---CC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF-G------V---EG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~---~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
+.+.++.... ......+..+++. + . .. .......++++.+++. .++++.+|||||+||+
T Consensus 80 i~~v~q~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 80 VAYVPQSEEV--------DWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRV 151 (272)
T ss_pred EEEecccccc--------ccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence 3333322100 0000011122111 0 0 00 1123445678888885 5788999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||+++++ +|+++..|+++++.
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999865 4899999999999999999999877 89999999988764
No 169
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.3e-44 Score=347.33 Aligned_cols=220 Identities=23% Similarity=0.262 Sum_probs=165.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+|+|+|++.|+ +|.+.+++..............
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL-SGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CceEEECCcccccCCHHHHHHH
Confidence 6999999999975 46999999999999999999999999999999999998876 8888877654321000000011
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
+.+..+... ............++..++... .....++..++++.+++. .++++.+|||||||||+||+||+.+|+
T Consensus 79 i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (490)
T PRK10938 79 VSDEWQRNN--TDMLSPGEDDTGRTTAEIIQD-EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD 155 (490)
T ss_pred hceeccCcc--hhhcccchhhccccHHHhccc-chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 222211100 000000000001223222111 011234567788899885 578899999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
+|||||||+|||+.++..+.++|.++++ .|.|||+||||++++.++||+|++|++|+++..|+++++.+
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999865 48999999999999999999999999999999998887654
No 170
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=349.21 Aligned_cols=213 Identities=21% Similarity=0.321 Sum_probs=167.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~--- 76 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKL--- 76 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHH---
Confidence 57999999999975 57999999999999999999999999999999999998876 899988886532110000
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcCC------CC---c----HHHHHHHHHHcCCC--cccccccCCHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE------GS---D----PVRRERLIELLDID--LQWRMHKVSDG 154 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~------~~---~----~~~~~~~l~~l~l~--~~~~~~~LSgG 154 (294)
..+..++++++ ..++..++..+++ ++.. .. . ..++.++++.+++. .++++.+||||
T Consensus 77 -------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 149 (510)
T PRK09700 77 -------AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS 149 (510)
T ss_pred -------HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence 00112333332 2233344443332 2110 10 1 12456678888885 57889999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|+|||+||||++++..+||++++|++|+++..|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999999999999865 48999999999999999999999999999999998
Q ss_pred HHHHH
Q 022663 235 LAELD 239 (294)
Q Consensus 235 ~~~~~ 239 (294)
++++.
T Consensus 229 ~~~~~ 233 (510)
T PRK09700 229 VSDVS 233 (510)
T ss_pred hhhCC
Confidence 87764
No 171
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-44 Score=354.59 Aligned_cols=221 Identities=19% Similarity=0.169 Sum_probs=172.7
Q ss_pred ccEEEcceEEEcCCC--------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccc
Q 022663 12 NSIKVCGMQFSYEGN--------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFH 83 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~--------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~ 83 (294)
++|+++||++.|+.. ....+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~-~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ-GGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CcEEEECCEECCc
Confidence 589999999999621 0136899999999999999999999999999999999998876 8999998865321
Q ss_pred cccccccCCcccccccccccccccCcc---cccccccHHHHh-hcC--CCC--c---HHHHHHHHHHcCCC---cccccc
Q 022663 84 DTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-FGV--EGS--D---PVRRERLIELLDID---LQWRMH 149 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~--~~~--~---~~~~~~~l~~l~l~---~~~~~~ 149 (294)
..... . ..++..++++++. .+++.++..+.+ +.. ... . .+++.++++.+++. .+++++
T Consensus 391 ~~~~~----~----~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 391 LSPGK----L----QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred CCHHH----H----HHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 10000 0 0011223333332 133444443332 111 111 1 23456788889984 478999
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+|||||||||+|||||+.+|++|||||||++||+.++.+++++|.+++++.|.|||+||||++++..+||+|++|++|++
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998776789999999999999999999999999999
Q ss_pred EecccHHHHHHh
Q 022663 230 RRAEKLAELDEL 241 (294)
Q Consensus 230 ~~~g~~~~~~~~ 241 (294)
++.|++++++..
T Consensus 543 v~~g~~~~i~~~ 554 (623)
T PRK10261 543 VEIGPRRAVFEN 554 (623)
T ss_pred EEecCHHHHhcC
Confidence 999999998754
No 172
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-44 Score=315.63 Aligned_cols=213 Identities=22% Similarity=0.265 Sum_probs=162.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|++.|. ..|.+.++|.+......
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~- 77 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID- 77 (249)
T ss_pred CeEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc-
Confidence 47999999999975 57999999999999999999999999999999999988752 37888888764321000
Q ss_pred cccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
. ..++..++++++ ..++. .+. +++.+.. ... . .+...++++.+++. .++++.+||
T Consensus 78 -----~----~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS 147 (249)
T PRK14253 78 -----V----ADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLS 147 (249)
T ss_pred -----h----HHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCC
Confidence 0 011122333333 22233 333 3332221 111 1 12234556666652 356789999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998853 58999999999999999999999999999999
Q ss_pred ccHHHHHH
Q 022663 233 EKLAELDE 240 (294)
Q Consensus 233 g~~~~~~~ 240 (294)
|+++++..
T Consensus 226 g~~~~~~~ 233 (249)
T PRK14253 226 DDTQVIFS 233 (249)
T ss_pred CCHHHHHc
Confidence 99887754
No 173
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.7e-44 Score=313.96 Aligned_cols=212 Identities=22% Similarity=0.274 Sum_probs=156.3
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++..+.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~------ 73 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT-SGEILLDGVDIRDLNLR------ 73 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC-CCEEEECCEehhhcCHH------
Confidence 46899999996422246999999999999999999999999999999999998876 89999888643210000
Q ss_pred ccccccccccccccCcc-cccccccHHH-HhhcCCCCcHHHHHHHH---------HHc--CC--CcccccccCCHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEI-PLQGDFSAEH-MIFGVEGSDPVRRERLI---------ELL--DI--DLQWRMHKVSDGQRRR 158 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l---------~~l--~l--~~~~~~~~LSgGqkqR 158 (294)
.....++++++. .++. .+..+ +.+.............+ +.+ ++ ..++.+.+|||||+||
T Consensus 74 -----~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 74 -----WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred -----HHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 011122333321 1222 23333 22221111111111222 222 22 2356788999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..+++.|.++. .|.|||++|||++++. +||++++|++|+++..++.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999875 4899999999999997 8999999999999999988776
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 225 ~~~ 227 (238)
T cd03249 225 MAQ 227 (238)
T ss_pred hhc
Confidence 543
No 174
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=315.71 Aligned_cols=217 Identities=21% Similarity=0.255 Sum_probs=164.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC----CceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG----RDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~----~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||+++|++ +.+|+++||+|.+|++++|+||||||||||+++|+|++.|+. .|.+.++|.+......
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~- 78 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL- 78 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc-
Confidence 47999999999975 569999999999999999999999999999999999988752 5888888764321000
Q ss_pred cccCCcccccccccccccccCcc-cccccccHHHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCCH
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
. ...++..++++++. .+++....+++.+.. ... . ......+++.+++. .++++.+|||
T Consensus 79 ----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 150 (251)
T PRK14249 79 ----D----VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG 150 (251)
T ss_pred ----C----hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence 0 00112223333332 223322223333221 111 1 12234456666652 4678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++. .+.|||++|||++++..+||++++|++|+++..+
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999873 3799999999999999999999999999999999
Q ss_pred cHHHHHHhh
Q 022663 234 KLAELDELR 242 (294)
Q Consensus 234 ~~~~~~~~~ 242 (294)
+++++....
T Consensus 229 ~~~~~~~~~ 237 (251)
T PRK14249 229 RTGEIFSRP 237 (251)
T ss_pred CHHHHHhCC
Confidence 998876543
No 175
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-44 Score=310.28 Aligned_cols=205 Identities=23% Similarity=0.350 Sum_probs=156.0
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
+.+ +|+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|++.|+ +|.+.++|.+....... ...
T Consensus 2 ~~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~---~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD-GGTIVLNGTVLFDSRKK---INL 70 (214)
T ss_pred cee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEecccccch---hhh
Confidence 445 99999976 344 99999999 999999999999999999999998876 88888887653210000 000
Q ss_pred ccccccccccccccCc-ccccccccHHHH-hhcCCC----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEG----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
...+..++++++ ..++...+..++ .+.... ....+..++++.+++. .++++.+||||||||++|||||
T Consensus 71 ----~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 71 ----PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred ----hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 001122333333 223334444333 222111 1123456788888885 4788999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
+.+|++|||||||+|||+.+++.+.++|.+++++.|.|||++|||++++..+||++++|++|+++..|
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987656899999999999999999999999999997654
No 176
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-44 Score=317.12 Aligned_cols=215 Identities=23% Similarity=0.280 Sum_probs=164.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|++. | ...|.+.++|.+......
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~- 78 (251)
T PRK14251 3 NIISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM- 78 (251)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc-
Confidence 37999999999975 579999999999999999999999999999999999876 2 238899888865321000
Q ss_pred cccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
.. ..++..++++++ ..++. .+..+ +.+.. .. .. ......+++.+++. .++++.+||
T Consensus 79 ----~~----~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 149 (251)
T PRK14251 79 ----DL----VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFS 149 (251)
T ss_pred ----hH----HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCC
Confidence 00 001112233322 12222 23333 32221 11 11 12345677777772 367889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||+||++|||||+.+|++|||||||++||+.++..+.+.|.++. + +.|||+||||++++..+||+|++|++|+++..
T Consensus 150 ~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999874 3 68999999999999999999999999999999
Q ss_pred ccHHHHHHh
Q 022663 233 EKLAELDEL 241 (294)
Q Consensus 233 g~~~~~~~~ 241 (294)
++.+++...
T Consensus 228 ~~~~~~~~~ 236 (251)
T PRK14251 228 GPTEEMFIA 236 (251)
T ss_pred CCHHHHHhC
Confidence 998887543
No 177
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-44 Score=316.08 Aligned_cols=215 Identities=22% Similarity=0.236 Sum_probs=163.6
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.+ ..+|.+.++|.+......
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~- 77 (250)
T PRK14262 2 PIIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL- 77 (250)
T ss_pred ceEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh-
Confidence 47999999999974 5799999999999999999999999999999999998763 147999888864321000
Q ss_pred cccCCcccccccccccccccCcc-cccccccHH-HHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
. ...+...++++++. .++. .+.. ++.+.. .. .. .+....+++.+++. .++++.+||
T Consensus 78 ----~----~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 148 (250)
T PRK14262 78 ----D----VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLS 148 (250)
T ss_pred ----h----HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcC
Confidence 0 00011123333321 2222 3333 322211 11 11 12235567777763 467889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++..
T Consensus 149 ~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999875 3 68999999999999999999999999999999
Q ss_pred ccHHHHHHh
Q 022663 233 EKLAELDEL 241 (294)
Q Consensus 233 g~~~~~~~~ 241 (294)
|+++++.+.
T Consensus 227 g~~~~~~~~ 235 (250)
T PRK14262 227 GPTREIVER 235 (250)
T ss_pred cCHHHHHhC
Confidence 998887643
No 178
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=318.64 Aligned_cols=220 Identities=20% Similarity=0.189 Sum_probs=165.2
Q ss_pred CCcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccc
Q 022663 9 EKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHD 84 (294)
Q Consensus 9 ~~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~ 84 (294)
...++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.+. ..|.+.++|.+....
T Consensus 16 ~~~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CCCceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 34568999999999975 46999999999999999999999999999999999987531 378888888654210
Q ss_pred ccccccCCcccccccccccccccCcc-cccccccHHHHhhcC--CCC---cHHHHHHHHHHcCCC------cccccccCC
Q 022663 85 TQLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV--EGS---DPVRRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~------~~~~~~~LS 152 (294)
... ...++..++++++. .++.....+++.+.. ... .......+++.+++. .++++.+||
T Consensus 93 ~~~---------~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (274)
T PRK14265 93 QIN---------SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALS 163 (274)
T ss_pred cch---------hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCC
Confidence 000 00011223333331 222221123332211 011 112234556666652 467889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-------
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ------- 225 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~------- 225 (294)
|||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++.++||++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999999885 3 6899999999999999999999998
Q ss_pred --CCeEEecccHHHHHHhh
Q 022663 226 --DGELRRAEKLAELDELR 242 (294)
Q Consensus 226 --~G~i~~~g~~~~~~~~~ 242 (294)
+|+++..|+++++....
T Consensus 242 ~~~G~~~~~g~~~~~~~~~ 260 (274)
T PRK14265 242 KRRGKLVEFSPTEQMFGSP 260 (274)
T ss_pred ccCceEEEeCCHHHHHhCC
Confidence 89999999999886543
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.9e-44 Score=311.25 Aligned_cols=207 Identities=20% Similarity=0.297 Sum_probs=158.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 5 ~~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~--- 77 (225)
T PRK10247 5 SPLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDISTLKPE--- 77 (225)
T ss_pred CceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEcCcCCHH---
Confidence 347999999999975 57999999999999999999999999999999999988776 89998887643211000
Q ss_pred CCcccccccccccccccCc-ccccccccHHH-Hhhc--CCC--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEG--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~l 161 (294)
.+...++++++ ..+++. +..+ +.+. ... ....+..++++.+++. .++++.+|||||+|||+|
T Consensus 78 --------~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 148 (225)
T PRK10247 78 --------IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISL 148 (225)
T ss_pred --------HHHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHH
Confidence 01112222222 122332 3333 3221 111 1233456788888884 478899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-CCeEEeccc
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-DGELRRAEK 234 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i~~~g~ 234 (294)
||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++. .||++++|+ ++..+.+|.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999999999987666899999999999996 699999995 444445444
No 180
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-44 Score=347.95 Aligned_cols=214 Identities=22% Similarity=0.309 Sum_probs=168.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCccccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ..+|.+.++|.+........
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~-- 78 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD-- 78 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH--
Confidence 57999999999975 5799999999999999999999999999999999999876 24899998886542110000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hcCC----C-Cc----HHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE----G-SD----PVRRERLIELLDID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~-~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkq 157 (294)
..+..++++++ ..++..++..+++ +... . .. ..++.++++.+++. .++++.+|||||||
T Consensus 79 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 79 --------TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ 150 (506)
T ss_pred --------HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH
Confidence 00112333332 2233444544432 2211 1 11 13456788888885 57889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++..+||+|++|++|+++..+++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99999999999999999999999999999999999999864 58999999999999999999999999999999988776
Q ss_pred HH
Q 022663 238 LD 239 (294)
Q Consensus 238 ~~ 239 (294)
+.
T Consensus 230 ~~ 231 (506)
T PRK13549 230 MT 231 (506)
T ss_pred CC
Confidence 53
No 181
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=317.41 Aligned_cols=216 Identities=19% Similarity=0.193 Sum_probs=165.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++||+++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|++.| ..+|.+.++|.+......
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 458999999999964 5799999999999999999999999999999999998764 248899888865321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccH-HHHhhcCC--CC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVE--GS-D----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~-~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. ...+..++++++ ..++.. +. +++.+... .. . .....++++.+++. .++++.+|
T Consensus 95 -----~~----~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 164 (267)
T PRK14237 95 -----NV----YEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL 164 (267)
T ss_pred -----Ch----HHHhcceEEEecCCccccc-cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC
Confidence 00 001112333333 122222 33 33322211 11 1 12345567777762 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++..+||++++|++|+++.
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 3 6899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 243 ~g~~~~~~~~ 252 (267)
T PRK14237 243 YDKTRNIFTN 252 (267)
T ss_pred eCCHHHHhcC
Confidence 9999888653
No 182
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.2e-44 Score=333.77 Aligned_cols=212 Identities=22% Similarity=0.283 Sum_probs=164.2
Q ss_pred eEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc----ccccccccccCCcc
Q 022663 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS----SFHDTQLVCSGDLS 94 (294)
Q Consensus 19 ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~ 94 (294)
+.++|+. ..+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.. ....... ..
T Consensus 30 ~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G~I~idG~~~~~~i~~~~~~----~l- 100 (382)
T TIGR03415 30 ILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RGSVLVKDGDGSIDVANCDAA----TL- 100 (382)
T ss_pred HHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEecccccccCCHH----HH-
Confidence 4445543 46899999999999999999999999999999999998886 8999998752 1110000 00
Q ss_pred cccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 95 YLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
.......++++++ ..+++..+..+ +.++. .... ..+..++++.+++. .++++.+|||||||||+||||
T Consensus 101 --~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 101 --RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred --HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 0000123444443 33445455443 33332 1111 23456788888885 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+.+|+||||||||++||+..+.++.+.|.++.++.++|||+||||++++.++||||++|++|+++..|+++++...
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999999999999999998776689999999999999999999999999999999999988654
No 183
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.3e-44 Score=346.73 Aligned_cols=212 Identities=22% Similarity=0.339 Sum_probs=167.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~--- 75 (501)
T PRK10762 3 ALLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKS--- 75 (501)
T ss_pred ceEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHH---
Confidence 47999999999975 57999999999999999999999999999999999998886 899998886532110000
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hcCC------CCc----HHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE------GSD----PVRRERLIELLDID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkq 157 (294)
..+..++++++ ..++..++..+++ ++.. ..+ ..++.++++.+++. .++++.+|||||||
T Consensus 76 -------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 148 (501)
T PRK10762 76 -------SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ 148 (501)
T ss_pred -------HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 00112233322 2233444544432 2211 111 12456778888885 57889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++..+||+|++|++|+++..+++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence 99999999999999999999999999999999999999864 58999999999999999999999999999999888766
Q ss_pred H
Q 022663 238 L 238 (294)
Q Consensus 238 ~ 238 (294)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 184
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=314.43 Aligned_cols=214 Identities=22% Similarity=0.268 Sum_probs=162.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--C--CCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--G--GRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~--~~g~i~~~~~~~~~~~~~~ 88 (294)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+..+ . .+|.+.++|.+......
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~-- 77 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI-- 77 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--
Confidence 5999999999975 4699999999999999999999999999999999998653 1 37999988865421000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCCH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
.. ..++..++++++ ..++. .+.. ++.+.. ... . .+...++++.+++. .++++.+|||
T Consensus 78 ---~~----~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 149 (250)
T PRK14240 78 ---DV----NQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG 149 (250)
T ss_pred ---ch----HHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH
Confidence 00 001112333332 12223 3333 332211 111 1 22345566677652 3678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999874 3 789999999999999999999999999999999
Q ss_pred cHHHHHHh
Q 022663 234 KLAELDEL 241 (294)
Q Consensus 234 ~~~~~~~~ 241 (294)
+.+++...
T Consensus 228 ~~~~~~~~ 235 (250)
T PRK14240 228 DTVDLFTN 235 (250)
T ss_pred CHHHHHhC
Confidence 98887653
No 185
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=311.41 Aligned_cols=210 Identities=22% Similarity=0.297 Sum_probs=156.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|++++|++ .+.+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|........
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------ 72 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ-KGQILIDGIDIRDISR------ 72 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEeHHHcCH------
Confidence 4789999999964 246999999999999999999999999999999999998876 8999888764321000
Q ss_pred cccccccccccccccCcc-cccccccHH-HHhhcCCCCcHHHHHHHHHHcC-----------CC--cccccccCCHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGVEGSDPVRRERLIELLD-----------ID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSgGqkq 157 (294)
..++..++++++. .++.. +.. ++.+............+++.++ +. .++++.+|||||||
T Consensus 73 -----~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 73 -----KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred -----HHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 0011123333332 12222 332 3322211112222223333222 21 34567899999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||+|||+.++..+++.|.++. + +.|||+|||+++++. .||++++|++|+++..++.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999874 3 899999999999986 599999999999999888777
Q ss_pred HHH
Q 022663 238 LDE 240 (294)
Q Consensus 238 ~~~ 240 (294)
+..
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 654
No 186
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1e-43 Score=313.15 Aligned_cols=210 Identities=25% Similarity=0.372 Sum_probs=165.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|++.|. .|.+.++|.+..... .
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~i~g~~~~~~~--~----- 69 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVH--A----- 69 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCC--h-----
Confidence 478999999975 57999999999999999999999999999999999998776 888988886532110 0
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
....++++++ ..++...+..+ +.+... ... .+...++++.+++. .++.+.+||+||+||++|||
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar 143 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALAR 143 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 0112223332 22333334333 222111 111 22346678888875 47788999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||+.+|+++||||||+|||+.++..++++|.++.++.+.|||++||+++++.++||++++|++|++++.++.+++.+
T Consensus 144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999999999998866558999999999999999999999999999999999888754
No 187
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=100.00 E-value=1.4e-43 Score=295.62 Aligned_cols=279 Identities=69% Similarity=1.090 Sum_probs=248.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
...|++.++.|+|... .|++-|+|++++.|..+.++|.||||||||||+|+|..... .|.+.+.|.+.+++.....+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcCcCcccccccccc
Confidence 3579999999999763 48999999999999999999999999999999999987665 69999999999998888889
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
++..|.+.+|....+...+.|++.+++++.++++....+.++.+.+++.|++++..+++.+|-|||+||.||..|++.-+
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccccee
Confidence 99999999999988888889999999999999998888888889999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhhhhhhhHHH
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSV 250 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 250 (294)
+|||||-|-.||..+|..+++++++.++++|.||+++||-.+-++.+..+++.|..|+++..-+.+.+.+.....++...
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~~~nl~s~ 247 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTSPNLLST 247 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987666666555555566778
Q ss_pred HHHHHhhhhhhhccCCCCCCcccCCCCCcccCCCcccccccccC
Q 022663 251 VESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294 (294)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (294)
.++|+..+.+..++...... .....++-.+++++||+|+|-|
T Consensus 248 veswlr~E~k~~kk~~k~~~--~s~~~~~~~s~~~s~~~~~~yr 289 (291)
T KOG2355|consen 248 VESWLRKENKNNKKTRKEKK--NSLHPPVLESLKRSSRIMDYYR 289 (291)
T ss_pred HHHHHHhhhhhhhheeeccc--ccCCChhHhhhhhcccccchhc
Confidence 88999987777665433333 3344568889999999999965
No 188
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1e-43 Score=309.55 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=151.9
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. .+.+|+|+||+|++|++++|+||||||||||+++|+|+..|+ .|.+.++|.+.......
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~------ 74 (220)
T cd03245 3 IEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPA------ 74 (220)
T ss_pred EEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCeEEECCEEhHHCCHH------
Confidence 7899999999642 246999999999999999999999999999999999998776 88998887643110000
Q ss_pred ccccccccccccccCcc-cccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC--ccc-----------ccccCCHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID--LQW-----------RMHKVSDGQRRR 158 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~-----------~~~~LSgGqkqR 158 (294)
..+..++++++. .++. .+..+.+ +...........++++.+++. .++ .+.+||||||||
T Consensus 75 -----~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr 148 (220)
T cd03245 75 -----DLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA 148 (220)
T ss_pred -----HHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence 011122333322 1222 2443332 222212233445566666653 233 346999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
++|||||+.+|++|||||||+|||+.++..+++.|.++++ +.|||++|||++++ .+||++++|++|+++..
T Consensus 149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999998754 38999999999987 69999999999998764
No 189
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=319.90 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=164.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ ..+|.+.++|.+......
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 457999999999975 4699999999999999999999999999999999998763 248999988865321000
Q ss_pred ccccCCcccccccccccccccCcc-cccccccH-HHHhhcC--CCC---cHHHHHHHHHHcCCC------cccccccCCH
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGV--EGS---DPVRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~---~~~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
. ...++..++++++. .++.. +. +++.+.. ... ...++..+++.+++. .++++.+|||
T Consensus 114 -----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSg 183 (285)
T PRK14254 114 -----D----PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG 183 (285)
T ss_pred -----c----hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCH
Confidence 0 00011223333321 22222 33 3332211 111 123456677788763 4678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE-EeeCCeEEec
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA-YIQDGELRRA 232 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~-~l~~G~i~~~ 232 (294)
||||||+|||||+.+|++|||||||+|||+.++..+.++|.++++ +.|||++|||++++..+|||++ +|++|+++..
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999864 4799999999999999999975 6799999999
Q ss_pred ccHHHHHHh
Q 022663 233 EKLAELDEL 241 (294)
Q Consensus 233 g~~~~~~~~ 241 (294)
++++++...
T Consensus 262 g~~~~~~~~ 270 (285)
T PRK14254 262 DDTDKIFEN 270 (285)
T ss_pred CCHHHHHhC
Confidence 998887543
No 190
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=316.04 Aligned_cols=217 Identities=17% Similarity=0.194 Sum_probs=163.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~ 87 (294)
++|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++.+ ..+|.+.++|.+......
T Consensus 9 ~~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~- 84 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV- 84 (264)
T ss_pred eEEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc-
Confidence 48999999999975 4799999999999999999999999999999999998652 137899888864321000
Q ss_pred cccCCcccccccccccccccCc-ccccccccHHHHhhcCC--CC---cHHHHHHHHHHcCCC------cccccccCCHHH
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVE--GS---DPVRRERLIELLDID------LQWRMHKVSDGQ 155 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~---~~~~~~~~l~~l~l~------~~~~~~~LSgGq 155 (294)
.. ..+...++++++ ..++.....+++.+... .. ..+....+++.+++. .++.+.+|||||
T Consensus 85 ----~~----~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 156 (264)
T PRK14243 85 ----DP----VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQ 156 (264)
T ss_pred ----Ch----HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHH
Confidence 00 011122333333 12222222233332211 11 112334556666652 466788999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee---------C
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ---------D 226 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~---------~ 226 (294)
+||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++..+||+|++|+ +
T Consensus 157 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~ 234 (264)
T PRK14243 157 QQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRY 234 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccC
Confidence 9999999999999999999999999999999999999998854 5899999999999999999999998 8
Q ss_pred CeEEecccHHHHHHhh
Q 022663 227 GELRRAEKLAELDELR 242 (294)
Q Consensus 227 G~i~~~g~~~~~~~~~ 242 (294)
|++++.|+++++.+..
T Consensus 235 g~i~~~~~~~~~~~~~ 250 (264)
T PRK14243 235 GYLVEFDRTEKIFNSP 250 (264)
T ss_pred ceEEEeCCHHHHHhCC
Confidence 9999999999987543
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=318.05 Aligned_cols=216 Identities=20% Similarity=0.235 Sum_probs=166.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.| ..+|.+.++|........
T Consensus 19 ~~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 19 APAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred CcEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 568999999999975 5799999999999999999999999999999999999875 248889888764321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CC-CcH----HHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EG-SDP----VRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~~~~~L 151 (294)
. ..++..++++++ ..++. .+. +++.+.. .. ... ....++++.+++. .++.+.+|
T Consensus 96 ~----------~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L 164 (276)
T PRK14271 96 V----------LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRL 164 (276)
T ss_pred h----------HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccC
Confidence 0 011122333333 12233 333 3333221 11 111 1234567777763 35678899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+||++|||||+.+|++|||||||++||+.+++.+.+.|.++.+ +.|||+||||++++..+||++++|++|+++.
T Consensus 165 SgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 4899999999999999999999999999999
Q ss_pred cccHHHHHHhh
Q 022663 232 AEKLAELDELR 242 (294)
Q Consensus 232 ~g~~~~~~~~~ 242 (294)
.++++++.+..
T Consensus 243 ~g~~~~~~~~~ 253 (276)
T PRK14271 243 EGPTEQLFSSP 253 (276)
T ss_pred eCCHHHHHhCc
Confidence 99999886643
No 192
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=311.68 Aligned_cols=210 Identities=23% Similarity=0.307 Sum_probs=165.7
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ ++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+...... ..
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~-~G~v~i~g~~~~~~~~--~~--- 70 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPP--EK--- 70 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcCcCCh--hH---
Confidence 468999999964 3899999999999999999999999999999999998886 8999988865321100 01
Q ss_pred ccccccccccccccCc-ccccccccHHH-HhhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
..++++++ ..++...+..+ +.+.. ... ..+...++++.+++. .++++.+|||||+||++|||
T Consensus 71 --------~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 142 (235)
T cd03299 71 --------RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIAR 142 (235)
T ss_pred --------cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHH
Confidence 12222222 22333334333 22221 111 122345678888885 57889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||+.+|++|||||||+|||+.+++.+++.|.+++.+.+.|||++||+++++..+||++++|++|+++..++.+++.+.
T Consensus 143 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999999998765689999999999999999999999999999999998877553
No 193
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=317.31 Aligned_cols=217 Identities=20% Similarity=0.274 Sum_probs=165.8
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDT 85 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~ 85 (294)
+.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.+ ..+|.+.++|.+.....
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3568999999999965 4699999999999999999999999999999999998764 24899988886542100
Q ss_pred cccccCCcccccccccccccccCc-ccccccccH-HHHhhc--CCCC-c----HHHHHHHHHHcCCC------ccccccc
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFG--VEGS-D----PVRRERLIELLDID------LQWRMHK 150 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~~~~~ 150 (294)
. . ...++..++++++ ..++.. +. +++.+. .... . .....++++.+++. .++.+.+
T Consensus 99 ~-----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 168 (272)
T PRK14236 99 V-----D----VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFG 168 (272)
T ss_pred c-----C----HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCccc
Confidence 0 0 0011122333332 122332 33 333222 1111 1 12345667777763 3677899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++.++||++++|++|+++
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999885 3 689999999999999999999999999999
Q ss_pred ecccHHHHHHh
Q 022663 231 RAEKLAELDEL 241 (294)
Q Consensus 231 ~~g~~~~~~~~ 241 (294)
..|+++++...
T Consensus 247 ~~g~~~~~~~~ 257 (272)
T PRK14236 247 EYGDTDTLFTS 257 (272)
T ss_pred ecCCHHHHhcC
Confidence 99998887543
No 194
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=313.64 Aligned_cols=217 Identities=23% Similarity=0.261 Sum_probs=163.1
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCcccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDT 85 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~ 85 (294)
+.++|+++||+++|+. +++|+++||+|.+||+++|+||||||||||+++|+|+.. |+ .+|.+.++|.+.....
T Consensus 2 ~~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 2 AKKIITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred CcceEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 3458999999999975 579999999999999999999999999999999999864 32 3789988886532100
Q ss_pred cccccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CC-Cc----HHHHHHHHHHcCCC------ccccccc
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHK 150 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~ 150 (294)
. .. ..+...++++++ ..++. .+. +++.+.. .. .. .+....+++.+++. .++.+.+
T Consensus 79 ~-----~~----~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~ 148 (252)
T PRK14255 79 E-----DV----VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALS 148 (252)
T ss_pred c-----cH----HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCccc
Confidence 0 00 001112333332 12222 233 3332211 11 11 12234455666541 3678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||+||||++++..+||+|++|++|+++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLI 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998853 589999999999999999999999999999
Q ss_pred ecccHHHHHHh
Q 022663 231 RAEKLAELDEL 241 (294)
Q Consensus 231 ~~g~~~~~~~~ 241 (294)
..+++.++...
T Consensus 227 ~~~~~~~~~~~ 237 (252)
T PRK14255 227 EFADTKQMFLN 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99998887654
No 195
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-43 Score=346.38 Aligned_cols=223 Identities=21% Similarity=0.291 Sum_probs=169.5
Q ss_pred ccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663 12 NSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~ 86 (294)
++|+++|++++|++. ..+++|+|+||+|.+||+++|+||||||||||+|+|+|+++|. .+|.+.++|.+......
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 479999999999631 1246999999999999999999999999999999999998762 48999888865421100
Q ss_pred ccccCCcccccccccccccccCccc---ccccccHHHHhh-c--C-CCC----cHHHHHHHHHHcCCC-----ccccccc
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMIF-G--V-EGS----DPVRRERLIELLDID-----LQWRMHK 150 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~--~-~~~----~~~~~~~~l~~l~l~-----~~~~~~~ 150 (294)
.. .. ......++++++.+ +.+..+..+... . . ... ...++.++++.+++. .++++.+
T Consensus 84 ~~----~~---~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~ 156 (529)
T PRK15134 84 QT----LR---GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ 156 (529)
T ss_pred HH----HH---HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence 00 00 00001233333221 222233333221 1 0 111 123456788888884 3778999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||||||+|||||+.+|++|||||||++||+.++..++++|.+++++.|.|||+||||++++..+||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987666899999999999999999999999999999
Q ss_pred ecccHHHHHHh
Q 022663 231 RAEKLAELDEL 241 (294)
Q Consensus 231 ~~g~~~~~~~~ 241 (294)
..|+++++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99998887653
No 196
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-43 Score=310.04 Aligned_cols=211 Identities=25% Similarity=0.352 Sum_probs=157.4
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. +.++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.........
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~------ 72 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVRDYTLA------ 72 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC-CCEEEECCEEhhhCCHH------
Confidence 4789999999652 136999999999999999999999999999999999998876 89998888643211000
Q ss_pred ccccccccccccccCcc-cccccccHHH-HhhcCCCCcHHHH---------HHHHHHc--CCC--cccccccCCHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEI-PLQGDFSAEH-MIFGVEGSDPVRR---------ERLIELL--DID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~LSgGqkqR 158 (294)
..+..++++++. .++. .+..+ +.+.......... .++++.+ ++. .++++.+||||||||
T Consensus 73 -----~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 73 -----SLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred -----HHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 011122232221 1222 23333 3222211111111 2333333 332 456788999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 999999999999999999999999999999999999875 3 7899999999999976 999999999999999998887
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 224 ~~~ 226 (234)
T cd03251 224 LAQ 226 (234)
T ss_pred HHc
Confidence 544
No 197
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=319.48 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=164.1
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++||+++|++ ..+|+|+||+|.+||+++|+||||||||||+++|+|+.. | ...|.+.++|.+......
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 457999999999975 469999999999999999999999999999999999753 3 148999888864321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. ..++..++++++ ..++.. +.. ++.+.. ... . .+...++++.+++. .++++.+|
T Consensus 114 -----~~----~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 183 (286)
T PRK14275 114 -----DE----VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL 183 (286)
T ss_pred -----ch----HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhC
Confidence 00 001122333333 222322 333 332221 111 1 12344566777652 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++..+||++++|++|+++.
T Consensus 184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 5899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++.+.
T Consensus 262 ~g~~~~~~~~ 271 (286)
T PRK14275 262 HAPTAQLFTN 271 (286)
T ss_pred eCCHHHHHhC
Confidence 9998887653
No 198
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=314.40 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=162.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~~ 88 (294)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|. .+|.+.++|.+......
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~-- 78 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV-- 78 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--
Confidence 6999999999975 57999999999999999999999999999999999988664 26889888864321000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCC-cH----HHHHHHHHHcCCC------cccccccCCH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGS-DP----VRRERLIELLDID------LQWRMHKVSD 153 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~-~~----~~~~~~l~~l~l~------~~~~~~~LSg 153 (294)
. ...++..++++++ ..++...+.. ++.+.. ... .. +...++++.+++. .++++.+|||
T Consensus 79 ---~----~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 151 (252)
T PRK14272 79 ---D----PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG 151 (252)
T ss_pred ---C----HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH
Confidence 0 0001112333332 2233333433 332211 111 11 1223444555431 3677899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++|||++++..+||++++|++|+++..|
T Consensus 152 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 152 GQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 3 689999999999999999999999999999999
Q ss_pred cHHHHHHh
Q 022663 234 KLAELDEL 241 (294)
Q Consensus 234 ~~~~~~~~ 241 (294)
+++++...
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14272 230 PTDQLFTN 237 (252)
T ss_pred CHHHHHhC
Confidence 99887654
No 199
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=313.19 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=163.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--C--CCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--G--GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~--~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+..+ + ..|.+.++|.+......
T Consensus 4 ~~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 4 EIILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred cceEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 358999999999975 5799999999999999999999999999999999998643 1 27889888865321100
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHH-HHhhcCC--C-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE--G-SD----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~-~~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. ......++++++ ..++.. +.. ++.+... . .. .....++++.+++. .++.+.+|
T Consensus 81 -----~~----~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 150 (253)
T PRK14261 81 -----DV----VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSL 150 (253)
T ss_pred -----ch----hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhC
Confidence 00 001112333332 223332 333 3322211 1 11 12344566666652 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++||+++++..+||++++|++|+++.
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 5899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+++++...
T Consensus 229 ~g~~~~~~~~ 238 (253)
T PRK14261 229 FDKTTQIFEN 238 (253)
T ss_pred cCCHHHHHhC
Confidence 9999887643
No 200
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-43 Score=312.53 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=159.9
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--cccCCCceEEecCCcccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~--~~~~~~g~i~~~~~~~~~~~~~ 87 (294)
+.++|+++||++.|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+ +.|+ .|.+.++|.+.......
T Consensus 4 ~~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 4 NKPILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL-EGDILFKGESILDLEPE 79 (252)
T ss_pred CCceEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC-CceEEECCEEcccCChh
Confidence 3458999999999975 4699999999999999999999999999999999997 3454 88898887643211000
Q ss_pred cccCCcccccccccccccccCc-ccccccccHHHHh-hcC---------CCCc----HHHHHHHHHHcCCC---cccccc
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---------EGSD----PVRRERLIELLDID---LQWRMH 149 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---------~~~~----~~~~~~~l~~l~l~---~~~~~~ 149 (294)
... . ..++++++ ..+++..+..+.. +.. .... ..+..++++.+++. .++.+.
T Consensus 80 ~~~-~---------~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 80 ERA-H---------LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred hhh-e---------eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc
Confidence 000 0 01111111 1222223332221 110 0011 12345677888874 366776
Q ss_pred -cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCC
Q 022663 150 -KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDG 227 (294)
Q Consensus 150 -~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G 227 (294)
.|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+ ||++++|++|
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G 228 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNG 228 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999998864 589999999999999887 8999999999
Q ss_pred eEEecccHHH
Q 022663 228 ELRRAEKLAE 237 (294)
Q Consensus 228 ~i~~~g~~~~ 237 (294)
+++..|+++.
T Consensus 229 ~i~~~~~~~~ 238 (252)
T CHL00131 229 KIIKTGDAEL 238 (252)
T ss_pred EEEEecChhh
Confidence 9999998873
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=316.21 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=163.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++. | ...|.+.++|.+......
T Consensus 22 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred ceEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 458999999999975 469999999999999999999999999999999999876 2 248999988865321000
Q ss_pred ccccCCcccccccccccccccCcc-cccccccHHHHhhcC--CC-CcH----HHHHHHHHHcCC----C--cccccccCC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV--EG-SDP----VRRERLIELLDI----D--LQWRMHKVS 152 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~~----~~~~~~l~~l~l----~--~~~~~~~LS 152 (294)
. ...+...++++++. .++.....+++.+.. .. .+. ....++++.+++ . .++++.+||
T Consensus 99 -----~----~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LS 169 (271)
T PRK14238 99 -----S----VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLS 169 (271)
T ss_pred -----c----HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCC
Confidence 0 00111223333331 222222223333221 11 111 122344555532 1 467889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 170 gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998753 68999999999999999999999999999999
Q ss_pred ccHHHHHHh
Q 022663 233 EKLAELDEL 241 (294)
Q Consensus 233 g~~~~~~~~ 241 (294)
|+++++...
T Consensus 248 g~~~~~~~~ 256 (271)
T PRK14238 248 DDTDKIFSN 256 (271)
T ss_pred CCHHHHHcC
Confidence 999887654
No 202
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.9e-44 Score=311.39 Aligned_cols=193 Identities=20% Similarity=0.270 Sum_probs=153.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
+.+++++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|...... .
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~-----~--- 90 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRGRVSSLL-----G--- 90 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEchhh-----c---
Confidence 778899999976 57999999999999999999999999999999999998876 89998877542100 0
Q ss_pred ccccccccccccccCcccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
... .+.+..+..+++ +.. .... .+...++++.+++. .++.+.+||||||||++||||
T Consensus 91 --------~~~------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 156 (224)
T cd03220 91 --------LGG------GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIA 156 (224)
T ss_pred --------ccc------cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 000 011122332221 110 1111 12345677777875 477889999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|+.+|++|||||||+|||+.++..+.++|.+++++ +.|||++|||++++..+||++++|++|+++..|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988754 899999999999999999999999999997654
No 203
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=314.30 Aligned_cols=216 Identities=20% Similarity=0.230 Sum_probs=165.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~ 86 (294)
+++|+++|++++|++ ..+|+|+||+|.+||+++|+|+||||||||+|+|+|++.++ .+|.+.++|.+......
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 5 IPAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred cceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 457999999999975 46999999999999999999999999999999999987753 37899988864321000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
. ...+...++++++ ..++. .+..+ +.+.. .. .. .+...++++.+++. .++++.+|
T Consensus 82 -----~----~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 151 (259)
T PRK14260 82 -----N----INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGL 151 (259)
T ss_pred -----c----hHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccC
Confidence 0 0011122333333 22333 34433 32221 11 11 12345667777762 46788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-----C
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-----D 226 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-----~ 226 (294)
||||+|||+|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++|||++++..+||++++|+ +
T Consensus 152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCC
Confidence 99999999999999999999999999999999999999999998753 5899999999999999999999998 5
Q ss_pred CeEEecccHHHHHHh
Q 022663 227 GELRRAEKLAELDEL 241 (294)
Q Consensus 227 G~i~~~g~~~~~~~~ 241 (294)
|+++..|+++++.+.
T Consensus 230 G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 230 GQMVEFGVTTQIFSN 244 (259)
T ss_pred ceEEEeCCHHHHhcC
Confidence 999999999988654
No 204
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-43 Score=288.37 Aligned_cols=211 Identities=22% Similarity=0.285 Sum_probs=170.8
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.|+++++++..+... ...||++|+|.|++||.++|||||||||||||-+++|+..|+ +|.+.+.|.+........
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s-sGeV~l~G~~L~~ldEd~--- 81 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDEDA--- 81 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC-CceEEEcCcchhhcCHHH---
Confidence 799999999986432 356999999999999999999999999999999999999887 999999888654311100
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hc--CCC--C--cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEG--S--DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~--~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.. ......++++++ +.+.++++..++. .. +.+ . ......++++.+++. +..+|.+|||||||||+|
T Consensus 82 -rA---~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 82 -RA---ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred -HH---HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHH
Confidence 00 012334566655 5566777765443 21 112 1 223456788999985 688999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||++..|+||+.||||-+||..+-.++.++|..+.++.|.|+|+||||..++.+ |+|++.|.+|+++.+
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 9999999999999999999999999999999999999999999999999998875 999999999998753
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=352.02 Aligned_cols=231 Identities=19% Similarity=0.240 Sum_probs=172.6
Q ss_pred CcccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc-cc
Q 022663 10 KLNSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT-QL 87 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~-~~ 87 (294)
..++|+++||++.|+... ..++|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|....... ..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~-~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA-GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CeEEEECCEEeccccccc
Confidence 356899999999996311 246999999999999999999999999999999999998876 888877664220000 00
Q ss_pred cccCCcc-cccccc-cccccccCcc---cccccccHHH-HhhcC---CCCc----HHHHHHHHHHcCCC-----cccccc
Q 022663 88 VCSGDLS-YLGGSW-SKTVGSAGEI---PLQGDFSAEH-MIFGV---EGSD----PVRRERLIELLDID-----LQWRMH 149 (294)
Q Consensus 88 ~~~~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~~~~-~~~~~---~~~~----~~~~~~~l~~l~l~-----~~~~~~ 149 (294)
....... .....+ ...++++++. .+.+.++..+ +.+.. .... .+++.++++.+++. .++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0000000 000000 1234444442 2334445443 32221 1111 23456788889984 478899
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++.|+|||+||||++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 99999999999999999999999999999999999999999999998766689999999999999999999999999999
Q ss_pred EecccHHHHHHh
Q 022663 230 RRAEKLAELDEL 241 (294)
Q Consensus 230 ~~~g~~~~~~~~ 241 (294)
+..|+++++...
T Consensus 248 ~~~g~~~~~~~~ 259 (623)
T PRK10261 248 VETGSVEQIFHA 259 (623)
T ss_pred cccCCHHHhhcC
Confidence 999999887653
No 206
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.7e-43 Score=311.61 Aligned_cols=192 Identities=29% Similarity=0.415 Sum_probs=148.8
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... . .....+++++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~-~-----------~~~~~i~~~~ 100 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRR-K-----------KFLRRIGVVF 100 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEccccc-h-----------hhcccEEEEc
Confidence 46999999999999999999999999999999999998886 899988876421100 0 0111222222
Q ss_pred -c-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCC
Q 022663 109 -E-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177 (294)
Q Consensus 109 -~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEP 177 (294)
+ ..++..++..+.. +. ..... ......+++.+++. .++++.+||||||||++|||||+.+|++||||||
T Consensus 101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 2233334443322 11 11111 12345677888875 4778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 178 t~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|+|||+.++..+.++|.++.++.+.|||++|||++++..+||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999987656899999999999999999999999999997654
No 207
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=313.47 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=161.9
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccccccccc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~~~~ 89 (294)
-+++||+++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+.. + ...|.+.++|.+.......
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~-- 80 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN-- 80 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc--
Confidence 578999999964 579999999999999999999999999999999999875 2 1388998888643210000
Q ss_pred cCCcccccccccccccccCcc-cccccccHHHHhhc--CCCC--c----HHHHHHHHHHcCCC------cccccccCCHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFG--VEGS--D----PVRRERLIELLDID------LQWRMHKVSDG 154 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~----~~~~~~~l~~l~l~------~~~~~~~LSgG 154 (294)
. ..++..++++++. .++.....+++.+. .... . ......+++.+++. .++.+.+||||
T Consensus 81 ---~----~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 153 (251)
T PRK14244 81 ---V----VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGG 153 (251)
T ss_pred ---h----HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHH
Confidence 0 0011123333321 22222222333222 1110 1 12345677888873 35678899999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
||||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||++++|++|+++..++
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999874 3 7999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 022663 235 LAELDEL 241 (294)
Q Consensus 235 ~~~~~~~ 241 (294)
++++.+.
T Consensus 232 ~~~~~~~ 238 (251)
T PRK14244 232 TQEIFKN 238 (251)
T ss_pred HHHHhcC
Confidence 8887654
No 208
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-43 Score=310.78 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=166.2
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
..++|.++|++++|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.+.|...+......
T Consensus 7 ~~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~-~G~v~~~G~~~~~g~~~~- 81 (257)
T PRK14246 7 AEDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY-DSKIKVDGKVLYFGKDIF- 81 (257)
T ss_pred hhhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-cCceeEcCEEEECCcccc-
Confidence 3578999999999975 57999999999999999999999999999999999998876 665555543211100000
Q ss_pred cCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-CcH----HHHHHHHHHcCCC------cccccccCCHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SDP----VRRERLIELLDID------LQWRMHKVSDG 154 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~~~~~LSgG 154 (294)
.. ....++..++++++ ..+++..+..+ +.+.. .. ... .....+++.+++. .++.+..||+|
T Consensus 82 --~~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 82 --QI--DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred --cC--CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 00 00011223333333 22334444433 32221 11 111 2345677778873 36788999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
||||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||+|||+++++..+||++++|++|+++..|+
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999875 3 6899999999999999999999999999999999
Q ss_pred HHHHHHh
Q 022663 235 LAELDEL 241 (294)
Q Consensus 235 ~~~~~~~ 241 (294)
.+++.+.
T Consensus 236 ~~~~~~~ 242 (257)
T PRK14246 236 SNEIFTS 242 (257)
T ss_pred HHHHHhC
Confidence 9887654
No 209
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-43 Score=344.06 Aligned_cols=221 Identities=17% Similarity=0.205 Sum_probs=170.0
Q ss_pred cccEEEcceEEEcCCC--------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663 11 LNSIKVCGMQFSYEGN--------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~--------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~ 82 (294)
.++|+++||+++|+.. +.+.+|+++||+|++||+++|+||||||||||+|+|+|++ ++ +|.+.++|.+..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~-~G~i~~~g~~i~ 350 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NS-QGEIWFDGQPLH 350 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CC-CcEEEECCEEcc
Confidence 3579999999999521 0246999999999999999999999999999999999987 44 899998886532
Q ss_pred ccccccccCCcccccccccccccccCcc---cccccccHHH-HhhcC--C--CCc----HHHHHHHHHHcCCC---cccc
Q 022663 83 HDTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEH-MIFGV--E--GSD----PVRRERLIELLDID---LQWR 147 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~--~--~~~----~~~~~~~l~~l~l~---~~~~ 147 (294)
..... ... .++..++++++. .+++..+..+ +.++. . ... ..++.++++.+++. .+++
T Consensus 351 ~~~~~----~~~----~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 422 (529)
T PRK15134 351 NLNRR----QLL----PVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY 422 (529)
T ss_pred ccchh----hHH----HhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 11000 000 011123333332 1333344433 22221 1 011 23456788889984 4788
Q ss_pred cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||++++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999987666899999999999999999999999999
Q ss_pred eEEecccHHHHHHh
Q 022663 228 ELRRAEKLAELDEL 241 (294)
Q Consensus 228 ~i~~~g~~~~~~~~ 241 (294)
++++.|+++++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999888654
No 210
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=343.53 Aligned_cols=219 Identities=16% Similarity=0.182 Sum_probs=165.6
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~ 90 (294)
++|+++||+++|+..++.++|+|+||+|++||+++|+||||||||||+|+|+|++.|..+|.+.++|.+...... ....
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 479999999999421124699999999999999999999999999999999999874238999988764321000 0001
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hc----CCC---Cc----HHHHHHHHHHcCCC---cccccccCCHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG----VEG---SD----PVRRERLIELLDID---LQWRMHKVSDGQ 155 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~---~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq 155 (294)
..+.++++... ...++..++..+++ +. ... .+ .+++.++++.+++. .++++.+|||||
T Consensus 338 ~~i~~v~q~~~-------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 338 QGIAMVPEDRK-------RDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred CCCEEeCcchh-------hCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 12222222110 00123334433322 21 100 01 23456788888884 478899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.++++ +|.|||++|||++++.++||++++|++|+++..+++
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~ 489 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLIN 489 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999999875 599999999999999999999999999999998887
Q ss_pred HHH
Q 022663 236 AEL 238 (294)
Q Consensus 236 ~~~ 238 (294)
+++
T Consensus 490 ~~~ 492 (506)
T PRK13549 490 HNL 492 (506)
T ss_pred ccC
Confidence 665
No 211
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.1e-43 Score=348.67 Aligned_cols=214 Identities=25% Similarity=0.310 Sum_probs=172.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.++++||+|+|+.. +.++|+|+||+|++||.+||+|+||||||||+|+|+|++.|. .|.|.++|.+...-.
T Consensus 471 ~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~-~G~I~~dg~dl~~i~------- 541 (709)
T COG2274 471 EIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QGRILLDGVDLNDID------- 541 (709)
T ss_pred eEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEeHHhcC-------
Confidence 59999999999763 347999999999999999999999999999999999999997 999999998753211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqR 158 (294)
...+++.++++.+. .++.....+++.++....+.+.+.++++..+. . .......||||||||
T Consensus 542 ----~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 542 ----LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred ----HHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 12345566666653 34444445565555554444444444444332 1 234456799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|+|||||||||+||+.+.+.+.+.|.++. .|+|+|+|||++..+. .||||++|++|+|+++|+.+++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHH
Confidence 999999999999999999999999999999999999875 3799999999999776 6999999999999999999999
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+..
T Consensus 695 l~~~ 698 (709)
T COG2274 695 LAQG 698 (709)
T ss_pred HHhc
Confidence 8763
No 212
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=306.37 Aligned_cols=209 Identities=23% Similarity=0.327 Sum_probs=155.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ .+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+ +|.+.++|.+.......
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~v~~~g~~~~~~~~~------ 71 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS-SGSILIDGQDIREVTLD------ 71 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEhhhCCHH------
Confidence 468999999963 246999999999999999999999999999999999998776 89998887643211000
Q ss_pred ccccccccccccccCc-ccccccccHH-HHhhcCCCCcHHHHHHHH---------HHc--CCC--cccccccCCHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVEGSDPVRRERLI---------ELL--DID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l---------~~l--~l~--~~~~~~~LSgGqkqR 158 (294)
.++..++++++ ..++. .+.. ++.+.............+ +.+ ++. .++++.+||||||||
T Consensus 72 -----~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 72 -----SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred -----HHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 01112333332 12222 2333 333322111111122222 222 121 345678999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..+.+.|.++. + |.|||++||+++++.. ||++++|++|+++..++.+++
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence 999999999999999999999999999999999999875 4 8999999999999975 999999999999999988776
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
.+
T Consensus 223 ~~ 224 (236)
T cd03253 223 LA 224 (236)
T ss_pred hh
Confidence 54
No 213
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=307.30 Aligned_cols=225 Identities=32% Similarity=0.471 Sum_probs=176.3
Q ss_pred cEEEcceEEEcCCC------------------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE
Q 022663 13 SIKVCGMQFSYEGN------------------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV 74 (294)
Q Consensus 13 ~l~~~~ls~~y~~~------------------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i 74 (294)
++.++||++.|.-. ....+++||||+|++|++++++|||||||||+||+|+|++.|+ +|.+
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~-~G~v 81 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-SGKV 81 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC-CCeE
Confidence 67888888887410 0124788999999999999999999999999999999999987 9999
Q ss_pred EecCCcccccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCC-cHHHHHHHHHHcCCC--cccccccC
Q 022663 75 QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGS-DPVRRERLIELLDID--LQWRMHKV 151 (294)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~--~~~~~~~L 151 (294)
.++|.+++.......+ ++.++.. ...+..+..+....+.....++..... -.++.+.+.+.|+++ ++++++.|
T Consensus 82 ~V~G~~Pf~~~~~~~~-~~~~v~g---qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L 157 (325)
T COG4586 82 RVNGKDPFRRREEYLR-SIGLVMG---QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKL 157 (325)
T ss_pred EecCcCcchhHHHHHH-HHHHHhh---hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc
Confidence 9999987754322111 1111100 001112233333333333333333221 134566778888887 78999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|-|||.|+.||.+|+++|+||+|||||-|||..++..+.++|++++++++.||+++||+++.+.++||||++|+.|++++
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhh
Q 022663 232 AEKLAELDELR 242 (294)
Q Consensus 232 ~g~~~~~~~~~ 242 (294)
+|+.+++.+..
T Consensus 238 dg~l~~l~~~f 248 (325)
T COG4586 238 DGTLAQLQEQF 248 (325)
T ss_pred cccHHHHHHHh
Confidence 99999887653
No 214
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.1e-43 Score=291.83 Aligned_cols=162 Identities=22% Similarity=0.348 Sum_probs=134.6
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.+++.+.....
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~-------- 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFAS-------- 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCC--------
Confidence 478999999975 47999999999999999999999999999999999998876 788877664321000
Q ss_pred ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl 173 (294)
..+ . .....+ +..+|||||+||++|||||+.+|++||
T Consensus 69 ------------------------~~~-----------~---~~~~i~-----~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 69 ------------------------PRD-----------A---RRAGIA-----MVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred ------------------------HHH-----------H---HhcCeE-----EEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 000 0 000000 112399999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 174 LDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||||++||+.+++.+.++|+++.+ .+.|||++|||++++..+||++++|++|++++
T Consensus 106 lDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 106 LDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 48999999999999999999999999999864
No 215
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.8e-43 Score=340.43 Aligned_cols=224 Identities=21% Similarity=0.248 Sum_probs=168.2
Q ss_pred cccEEEcceEEEcCC--CCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec-CCcccccccc
Q 022663 11 LNSIKVCGMQFSYEG--NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL-NRSSFHDTQL 87 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~--~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~-~~~~~~~~~~ 87 (294)
.++|+++||+++|++ .+.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++ |.....-...
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCcccccccc
Confidence 358999999999952 11246999999999999999999999999999999999998876 8898885 4321000000
Q ss_pred cccCCcccccccccccccccCc-ccccccccHHHHh-hc--CCCC---cHHHHHHHHHHcCCC-------cccccccCCH
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGS---DPVRRERLIELLDID-------LQWRMHKVSD 153 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~---~~~~~~~~l~~l~l~-------~~~~~~~LSg 153 (294)
. .... ...+..++++++ ..+++.++..+.+ +. .... ...++.++++.+++. .++++.+|||
T Consensus 356 ~-~~~~----~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg 430 (520)
T TIGR03269 356 G-PDGR----GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE 430 (520)
T ss_pred c-hhhH----HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence 0 0000 001112333333 2233444444332 21 1111 122456778888884 3678999999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++.++||++++|++|+++..|
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999987666899999999999999999999999999999999
Q ss_pred cHHHHHH
Q 022663 234 KLAELDE 240 (294)
Q Consensus 234 ~~~~~~~ 240 (294)
+++++.+
T Consensus 511 ~~~~~~~ 517 (520)
T TIGR03269 511 DPEEIVE 517 (520)
T ss_pred CHHHHHh
Confidence 8877643
No 216
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.5e-43 Score=306.33 Aligned_cols=201 Identities=22% Similarity=0.250 Sum_probs=154.1
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC---CCceEEecCCcccccccccccCCccccccccccccccc
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG---GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA 107 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
+|+|+||+|++|++++|+||||||||||+|+|+|++.|. .+|.+.++|.+.... . .....+.+.++...
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~-~~~~~i~~~~q~~~------ 72 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-S-IRGRHIATIMQNPR------ 72 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-h-hhhheeEEEecCch------
Confidence 579999999999999999999999999999999998872 388998888654211 0 00012222222110
Q ss_pred CcccccccccHHHHh-hcC--CC-C---cHHHHHHHHHHcCCC-----cccccccCCHHHHHHHHHHHHHccCCCEEEee
Q 022663 108 GEIPLQGDFSAEHMI-FGV--EG-S---DPVRRERLIELLDID-----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLD 175 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~~--~~-~---~~~~~~~~l~~l~l~-----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLD 175 (294)
..+...++..+.+ +.. .. . ..+++.++++.+++. .++.+.+|||||||||+|||||+.+|++||||
T Consensus 73 --~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 73 --TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred --hhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0022223332221 110 11 1 123456788888885 46788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 176 EITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 176 EPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|||+|||+.++..+.+.|.+++++.+.|||++||+++++..+||++++|++|++...++++++...
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999998765689999999999999999999999999999999999887653
No 217
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=329.08 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=173.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.++++||+|+|++. ..++|+|+||++++||.++|+|++|||||||+.+|+|.+.|+ +|.+..+|.+...-.
T Consensus 336 ~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~-~G~i~~~g~~~~~l~------- 406 (573)
T COG4987 336 ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ-QGSITLNGVEIASLD------- 406 (573)
T ss_pred eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC-CCeeeECCcChhhCC-------
Confidence 69999999999874 357999999999999999999999999999999999998887 999999987654321
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
.+.++..+.+..+ ..++.....+|+.........+...++++.+++. .+.....|||||+||
T Consensus 407 ----~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR 482 (573)
T COG4987 407 ----EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482 (573)
T ss_pred ----hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHH
Confidence 1223334444444 3344443344555554455566677777777652 233456799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||+|+++.+++||||||.|||+.+.+++++.|.+.++ |+|+|+|||++..++ .||||++|++|+++++|.+.++
T Consensus 483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHh-hcCEEEEEECCeeeecCCHHhh
Confidence 9999999999999999999999999999999999988763 899999999999988 5999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
..+
T Consensus 560 l~~ 562 (573)
T COG4987 560 LAN 562 (573)
T ss_pred hcc
Confidence 764
No 218
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.7e-43 Score=303.87 Aligned_cols=204 Identities=18% Similarity=0.232 Sum_probs=153.0
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+..|. +|.+.++|.+......
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------- 73 (221)
T cd03244 3 IEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS-SGSILIDGVDISKIGL------- 73 (221)
T ss_pred EEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhHhCCH-------
Confidence 7899999999642 246999999999999999999999999999999999998776 8999888764321100
Q ss_pred ccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHH
Q 022663 94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv 159 (294)
..++..++++++. .++. .+..+.+.........+..++++.+++. .++.+.+||+||+||+
T Consensus 74 ----~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~ 148 (221)
T cd03244 74 ----HDLRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL 148 (221)
T ss_pred ----HHHhhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH
Confidence 0111223333321 1222 2333332211112223334444444432 2457889999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++.. ||++++|++|+++..++
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999874 3 6899999999999975 99999999999988764
No 219
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=295.22 Aligned_cols=177 Identities=26% Similarity=0.343 Sum_probs=137.6
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++++ .|.+.++|.+......
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------- 69 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLED------- 69 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccch-------
Confidence 478999999965 56999999999999999999999999999999999998776 8999888764321000
Q ss_pred ccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
....+...+++.++. .++...+..+.. .. .|||||+||++|||||+.+|++|
T Consensus 70 --~~~~~~~~i~~~~q~~~~~~~~t~~~~l------------------~~-------~lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 70 --ELPPLRRRIGMVFQDFALFPHLTVLENI------------------AL-------GLSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred --hHHHHhhcEEEEecCCccCCCCCHHHhe------------------ee-------cCCHHHHHHHHHHHHHHCCCCEE
Confidence 000011122222221 111122221111 00 09999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
||||||+|||+.++..++++|.+++++.+.|+|++|||++++..+||++++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999876547999999999999999999999999884
No 220
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-43 Score=302.66 Aligned_cols=195 Identities=19% Similarity=0.243 Sum_probs=153.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~v~~~g~~~~~~~~------ 70 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIRRQRD------ 70 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccchH------
Confidence 4899999999975 46999999999999999999999999999999999998886 8999888764321100
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hcC--CC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
.+...++++.+ ..+++..+..+.+ +.. .. .....+.++++.+++. .++++.+||||||||++|||||
T Consensus 71 ------~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al 144 (204)
T PRK13538 71 ------EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW 144 (204)
T ss_pred ------HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 01112222222 2233334443332 211 11 2334567788889885 5788999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
+.+|++|||||||++||+.++..+.++|.++++ .+.|||++|||++++..+.+|++++
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999998864 4899999999999999988888776
No 221
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-43 Score=293.82 Aligned_cols=172 Identities=27% Similarity=0.454 Sum_probs=137.9
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ .++|+++||++.+||+++|+||||||||||+++|+|++.|. .|.+.++|.+.....
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~-------- 68 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEP-------- 68 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccch--------
Confidence 468999999975 46999999999999999999999999999999999998776 899988876432100
Q ss_pred ccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
..++..++++++ ..++...+..+.+ .|||||+||++|||||+.+|++|
T Consensus 69 ----~~~~~~i~~~~q~~~~~~~~tv~~~~---------------------------~LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 69 ----EEVKRRIGYLPEEPSLYENLTVRENL---------------------------KLSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred ----HhhhccEEEEecCCccccCCcHHHHh---------------------------hcCHHHHHHHHHHHHHHcCCCEE
Confidence 011122333322 1122222221111 09999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
||||||++||+.++..+.++|.++.++ |.|+|++|||.+++..+||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998765 89999999999999999999999999874
No 222
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-42 Score=302.11 Aligned_cols=197 Identities=22% Similarity=0.304 Sum_probs=154.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|...... ...
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~i~~~---~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRG---DRS 81 (214)
T ss_pred cceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CeeEEECCEEccch---hhh
Confidence 458999999999975 46999999999999999999999999999999999998876 89998888643210 000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hc--CCCC-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGS-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
..++++++ ..++...+..+.+ +. .... ..+....+++.+++. .++++.+||||||||++|||
T Consensus 82 -----------~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 -----------RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred -----------hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHH
Confidence 11222222 1223333433322 21 1111 223446778888875 57889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
|++.+|++|||||||++||+.+++.+.++|.++.+ .|.|||++|||++++.++||++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999999998865 489999999999999999999999864
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-43 Score=338.78 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=163.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~---- 74 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTT---- 74 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHH----
Confidence 58999999999975 46999999999999999999999999999999999998876 89998887653211000
Q ss_pred CcccccccccccccccCc-ccccccccHHH-HhhcCC----C-Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE----G-SD----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~----~-~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
..++..++++++ ..++..++..+ +.+... . .. .++..++++.+++. .++++.+||||||||
T Consensus 75 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 75 ------AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM 148 (501)
T ss_pred ------HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHH
Confidence 001112333332 22333444433 322210 1 11 23456788888885 478899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||+||||++++..+||+|++|++|+++..++
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999864 58999999999999999999999999999987554
No 224
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.5e-43 Score=308.48 Aligned_cols=191 Identities=24% Similarity=0.266 Sum_probs=149.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (294)
|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... ....+.++ ...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~-----~~~~~v~q----------~~~ 64 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT-SGGVILEGKQITEPG-----PDRMVVFQ----------NYS 64 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCC-----hhheEEec----------Ccc
Confidence 57999999999999999999999999999999998876 899988876432100 00111111 122
Q ss_pred ccccccHHHHh-hcC----CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCC
Q 022663 112 LQGDFSAEHMI-FGV----EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180 (294)
Q Consensus 112 ~~~~~~~~~~~-~~~----~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~g 180 (294)
++...+..+++ +.. .... .....++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 65 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred cCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 33334443322 211 1111 12346778888885 5788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 181 LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
||+.++..+.+.|.+++++.|.|||+||||++++..+||+|++|++|+++..|+..++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999998766689999999999999999999999999999988865544
No 225
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=317.78 Aligned_cols=219 Identities=20% Similarity=0.260 Sum_probs=167.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~ 87 (294)
.+|+++|++++|.+. .+++|+|+||+|++||++||+||||||||||+++|+|+..+ ...|.+.++|.+......
T Consensus 79 ~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~- 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI- 156 (329)
T ss_pred ceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc-
Confidence 489999999999631 25699999999999999999999999999999999998753 237899998876431100
Q ss_pred cccCCcccccccccccccccCccc-ccccccH-HHHhhcC--CCC-cHH----HHHHHHHHcCCC------cccccccCC
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSA-EHMIFGV--EGS-DPV----RRERLIELLDID------LQWRMHKVS 152 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~--~~~-~~~----~~~~~l~~l~l~------~~~~~~~LS 152 (294)
. ...++..++++++.+ ++. .+. +++.++. ... +.+ ....+++.+++. .++++..||
T Consensus 157 ------~--~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 157 ------S--SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALS 227 (329)
T ss_pred ------c--hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCC
Confidence 0 001122233333322 222 343 3443321 111 111 134566766652 467889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||||||+|||||+.+|+||||||||++||+.+...+.+.|.++.+ ++|||+|||+++++..+||||++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 68999999999999999999999999999999
Q ss_pred ccHHHHHHhhh
Q 022663 233 EKLAELDELRN 243 (294)
Q Consensus 233 g~~~~~~~~~~ 243 (294)
|++++++..+.
T Consensus 306 g~~~~l~~~~~ 316 (329)
T PRK14257 306 GETKTIFIHPK 316 (329)
T ss_pred CCHHHHhcCCC
Confidence 99999876544
No 226
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.2e-42 Score=306.43 Aligned_cols=211 Identities=20% Similarity=0.229 Sum_probs=156.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccc-cc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQL-VC 89 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~-~~ 89 (294)
||+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ .|+ +|.+.++|.+....... ..
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLELSPEDRA 76 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC-ceEEEECCCccccCCHHHHh
Confidence 4899999999975 46999999999999999999999999999999999985 454 89999988654211000 00
Q ss_pred cCCcccccccccccccccCcccccccccHHHH-------hhcCCC---Cc----HHHHHHHHHHcCCC---cccccc-cC
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-------IFGVEG---SD----PVRRERLIELLDID---LQWRMH-KV 151 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~----~~~~~~~l~~l~l~---~~~~~~-~L 151 (294)
...+.+..+. ..+++..+...+ ...... .+ .....++++.+++. .++.+. +|
T Consensus 77 ~~~i~~~~q~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 146 (248)
T PRK09580 77 GEGIFMAFQY----------PVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 146 (248)
T ss_pred hcceEEEecC----------chhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCC
Confidence 0112222111 111111111100 000000 01 12345667777773 345554 79
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEE
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELR 230 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~ 230 (294)
||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++++ .++|||++|||++++..+ ||+|++|++|+++
T Consensus 147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~ 225 (248)
T PRK09580 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 225 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999998754 589999999999999987 8999999999999
Q ss_pred ecccHHHH
Q 022663 231 RAEKLAEL 238 (294)
Q Consensus 231 ~~g~~~~~ 238 (294)
..|+++..
T Consensus 226 ~~g~~~~~ 233 (248)
T PRK09580 226 KSGDFTLV 233 (248)
T ss_pred EeCCHHHH
Confidence 99987744
No 227
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.9e-43 Score=313.01 Aligned_cols=211 Identities=18% Similarity=0.262 Sum_probs=163.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|++. . .|.+.++|.+......
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~G~I~i~g~~i~~~~~------ 72 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGDIQIDGVSWNSVPL------ 72 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEhhhCCH------
Confidence 38899999999531 2569999999999999999999999999999999999876 4 7999998865421100
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--ccccccc-----------CCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHK-----------VSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LSgGqkqR 158 (294)
..++..++++++ ..++.. +..+++........+...++++.+++. .++.+.. |||||+||
T Consensus 73 -----~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 73 -----QKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred -----HHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 011223344433 223332 443333211122344556677777774 3445544 99999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|+||||||||++||+.++..+.+.|.+.. .++|||+|||+++++.. ||||++|++|++++.|+++++
T Consensus 147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL 223 (275)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHH
Confidence 999999999999999999999999999999999998753 47999999999998875 999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 224 ~~~ 226 (275)
T cd03289 224 LNE 226 (275)
T ss_pred hhC
Confidence 774
No 228
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=309.76 Aligned_cols=218 Identities=20% Similarity=0.171 Sum_probs=167.3
Q ss_pred CCcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccc
Q 022663 9 EKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHD 84 (294)
Q Consensus 9 ~~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~ 84 (294)
+..+.+.+++++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++.| ..+|.+.++|.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 4 EAPIVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CCCceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 45678999999999975 5799999999999999999999999999999999999876 1489999988654210
Q ss_pred ccccccCCcccccccccccccccCcc-cccccccH-HHHhhcCC--C---CcHHHHHHHHHHcCCC------cccccccC
Q 022663 85 TQLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVE--G---SDPVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~--~---~~~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. .. ..++..++++++. .++ ..+. +++.+... . ...+...++++.+++. .++++.+|
T Consensus 81 ~~-----~~----~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 150 (261)
T PRK14263 81 GV-----DP----VVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSL 150 (261)
T ss_pred cc-----ch----HhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 00 00 0111223333332 222 2343 33332211 1 1123456677887763 24567899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee------
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ------ 225 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~------ 225 (294)
||||+||++|||||+.+|++|||||||+|||+.++.+++++|.++. + +.|||++||+++++..+||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQG 228 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccc
Confidence 9999999999999999999999999999999999999999999884 3 6899999999999999999999996
Q ss_pred --CCeEEecccHHHHHHh
Q 022663 226 --DGELRRAEKLAELDEL 241 (294)
Q Consensus 226 --~G~i~~~g~~~~~~~~ 241 (294)
+|+++..|+.+++.+.
T Consensus 229 ~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 229 TRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred cCCceEEEeCCHHHHHhC
Confidence 8999999999888654
No 229
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-43 Score=338.09 Aligned_cols=216 Identities=21% Similarity=0.299 Sum_probs=181.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+|.|+.+.+.+||+|+||+|+|||++|||||||+||||+.++|-.++.|. +|.|.++|.+...-.
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt-sG~IllDG~~i~~~~------ 536 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT-SGRILLDGVPISDIN------ 536 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCeehhhcC------
Confidence 3699999999998765678999999999999999999999999999999999999997 999999998764321
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkq 157 (294)
...+++.++.+.| +.++.....+|+.++....+.+++..+.+..+. . -..+..+|||||||
T Consensus 537 -----~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 537 -----HKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred -----HHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 1234566777766 445665556777888876666666555544331 1 23456689999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|+||||||+++|.||||||.||+||.++...+.+.|.+..+ +.|||+|.|.+..+++ ||+|+++++|++++.|+.++
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHH
Confidence 99999999999999999999999999999999999988764 6899999999999885 99999999999999999999
Q ss_pred HHHhh
Q 022663 238 LDELR 242 (294)
Q Consensus 238 ~~~~~ 242 (294)
+++..
T Consensus 689 Ll~~~ 693 (716)
T KOG0058|consen 689 LLSKP 693 (716)
T ss_pred HhhCc
Confidence 98765
No 230
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-42 Score=303.78 Aligned_cols=204 Identities=23% Similarity=0.309 Sum_probs=152.0
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
-.++|+++|++++|++..+.++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~-- 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ-GGQVLLDGKPISQYEHK-- 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCCchHHcCHH--
Confidence 356899999999996422246999999999999999999999999999999999998876 88998888653211000
Q ss_pred cCCcccccccccccccccCcc-cccccccHH-HHhhcCCCCcH----H-----HHHHHHHHc--CCC--cccccccCCHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGVEGSDP----V-----RRERLIELL--DID--LQWRMHKVSDG 154 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~----~-----~~~~~l~~l--~l~--~~~~~~~LSgG 154 (294)
.....++++++. .++. .+.. ++.+....... . ...++++.+ ++. .++++.+||||
T Consensus 85 ---------~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 154 (226)
T cd03248 85 ---------YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGG 154 (226)
T ss_pred ---------HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHH
Confidence 011122222221 1222 2332 22222211111 0 123456666 453 46778999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
|+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ +.|||++|||++++. .||+|++|++|++
T Consensus 155 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999998753 589999999999996 4999999999874
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.8e-43 Score=339.64 Aligned_cols=223 Identities=19% Similarity=0.321 Sum_probs=165.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcc-----ccccc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSS-----FHDTQ 86 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~-----~~~~~ 86 (294)
|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+|+|+|++ .|+ +|.+.+.+... ..+..
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~-~G~i~~~~~~~~~~~~~~~~~ 76 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT-SGRIIYHVALCEKCGYVERPS 76 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC-ceEEEEecccccccccccccc
Confidence 578999999965 57999999999999999999999999999999999986 455 88887752100 00000
Q ss_pred cc------ccCCc-----cccc------ccccccccccCcc--cccccccH-HHHhhcC--CCCc----HHHHHHHHHHc
Q 022663 87 LV------CSGDL-----SYLG------GSWSKTVGSAGEI--PLQGDFSA-EHMIFGV--EGSD----PVRRERLIELL 140 (294)
Q Consensus 87 ~~------~~~~~-----~~~~------~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l 140 (294)
.. ....+ .... ..++..++++++. .++...+. +++.+.. .... ..++.++++.+
T Consensus 77 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 77 KVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156 (520)
T ss_pred ccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 00 00000 0000 0112234444442 23343443 3333321 1111 23456788888
Q ss_pred CCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 141 DID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 141 ~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|.+++++.|.|||+||||++++..+|
T Consensus 157 gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 885 478899999999999999999999999999999999999999999999999987767899999999999999999
Q ss_pred ceEEEeeCCeEEecccHHHHHH
Q 022663 219 THLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 219 d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|+|++|++|+++..|+++++..
T Consensus 237 d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 237 DKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CEEEEEeCCEEeeecCHHHHHH
Confidence 9999999999999888887654
No 232
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.5e-42 Score=303.67 Aligned_cols=205 Identities=22% Similarity=0.314 Sum_probs=156.9
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc---cCCCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM---VGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~---~~~~g~i~~~~~~~~~~~~~~ 88 (294)
.+.++|++++|++.+ .+++|+|+||+|++||+++|+||||||||||+|+|+|++. |+ +|.+.++|.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~-~G~i~~~g~~~~~~---- 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT-SGQILFNGQPRKPD---- 77 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC-ceEEEECCEECChH----
Confidence 478999999997521 2579999999999999999999999999999999999987 55 88888887643110
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHH-Hhhc----C-CCCc----HHHHHH-HHHHcCCC--cccccccCCHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG----V-EGSD----PVRRER-LIELLDID--LQWRMHKVSDG 154 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~----~-~~~~----~~~~~~-~l~~l~l~--~~~~~~~LSgG 154 (294)
.++..++++++ ..++..++..+ +.+. . .... ...... +++.+++. .++.+.+||||
T Consensus 78 ----------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (226)
T cd03234 78 ----------QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGG 147 (226)
T ss_pred ----------HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHH
Confidence 01122333332 22333334333 2221 1 1111 112233 67777764 46788999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhhhceEEEeeCCeEEecc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|+||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ .+.|+|++||++ +++..+||++++|++|+++..|
T Consensus 148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998865 489999999998 5899999999999999998754
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-42 Score=299.30 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=152.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++|++++|++. ..++|+++||+|++|++++|+||||||||||+++|+|++.|. +|.+.++|.+......
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~----- 77 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE-EGKIEIDGIDISTIPL----- 77 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEhHHCCH-----
Confidence 469999999999642 236999999999999999999999999999999999998776 8999888864321100
Q ss_pred CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
..++..++++++. .++.. +..+++.......... +.+.++ .++++.+|||||+||++|||||+.+|+
T Consensus 78 ------~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~---~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 78 ------EDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDEE---IYGALR--VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred ------HHHHhhEEEEecCCcccCc-cHHHHhcccCCCCHHH---HHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 0011223333332 22222 4433332111112222 233333 457789999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
+|||||||++||+.++..++++|.++. .+.|+|++||+++++.. ||++++|++|+++..|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 999999999999999999999999873 38999999999999976 99999999999987765
No 234
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-42 Score=327.55 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=173.6
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.++.+|+++.|++ ++++++|+||++++|+.++|+|+||||||||+++|+|+.+|. +|.+.++|.+...-.
T Consensus 320 ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~-~G~I~vng~~l~~l~------- 389 (559)
T COG4988 320 EISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLS------- 389 (559)
T ss_pred eeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCccccccC-------
Confidence 3555699999986 348999999999999999999999999999999999998885 999999998653211
Q ss_pred cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--------ccc----ccccCCHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID--------LQW----RMHKVSDGQRRRV 159 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--------~~~----~~~~LSgGqkqRv 159 (294)
...|++++.++++.+ ++.....+|+.++....+.+...++++..++. +|. ....|||||+|||
T Consensus 390 ----~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 390 ----PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ----HHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 234566677776644 34444456666665555556666666665541 233 3345999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
++||||+.+++++|+||||++||.++...+.+.|.++.+ ++|||+|||++..+.+ ||+|++|++|++++.|.++++.
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHh
Confidence 999999999999999999999999999999999999875 5899999999998875 9999999999999999999987
Q ss_pred Hhhh
Q 022663 240 ELRN 243 (294)
Q Consensus 240 ~~~~ 243 (294)
+..+
T Consensus 543 ~~~~ 546 (559)
T COG4988 543 EKQG 546 (559)
T ss_pred hcCc
Confidence 6543
No 235
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.1e-42 Score=303.30 Aligned_cols=206 Identities=27% Similarity=0.435 Sum_probs=156.3
Q ss_pred EEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 14 IKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 14 l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
|+++|+++.|++.. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+ +|.+.++|.+........
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~---- 76 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ-EGSLKVLGQELYGASEKE---- 76 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEhHhcCHhH----
Confidence 78999999996421 146999999999999999999999999999999999998776 899988886532110000
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcC--C-CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--E-GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
....+..++++++ ..++...+..+ +.+.. . ... ...+.++++.+++. .++.+.+||+|||||++|
T Consensus 77 ----~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~l 152 (220)
T TIGR02982 77 ----LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAI 152 (220)
T ss_pred ----HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence 0001122333332 22333334333 22211 1 111 22456788888885 577899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
||||+.+|++|||||||+|||+.++..+.++|.++.++.+.|||++|||++. .++||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999876568999999999985 579999999999986
No 236
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=336.68 Aligned_cols=208 Identities=23% Similarity=0.312 Sum_probs=162.4
Q ss_pred EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663 16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 95 (294)
++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~-------- 68 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSK-------- 68 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCEECCCCCHH--------
Confidence 4789999975 57999999999999999999999999999999999998886 89999888653211000
Q ss_pred ccccccccccccCc-ccccccccHHHH-hhcC---CC--Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 96 LGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV---EG--SD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~~--~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
..++..++++++ ..++..++..+. .+.. .. .. .++..++++.+++. .++++.+|||||||||+||
T Consensus 69 --~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 69 --EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred --HHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 000112222222 223333444333 2221 11 01 12456678888875 5788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++..+||++++|++|+++..++++++
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999999999999999864 589999999999999999999999999999999887765
No 237
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-42 Score=298.27 Aligned_cols=193 Identities=20% Similarity=0.237 Sum_probs=147.7
Q ss_pred cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc---cCCCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM---VGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~---~~~~g~i~~~~~~~~~~~~~~ 88 (294)
.+.++||+|.|+.. .++.+|+++||+|++||+++|+||||||||||+++|+|++. |+ +|.+.++|.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~-~G~i~i~g~~~~~~~--- 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHYNGIPYKEFA--- 78 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc-ceEEEECCEECccch---
Confidence 58999999999642 23579999999999999999999999999999999999987 54 899988886432110
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
......++++++ ..++..++..+++ +.. . + ..++++.+||+||+||++|||||+
T Consensus 79 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~------~-------~--~~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 79 ---------EKYPGEIIYVSEEDVHFPTLTVRETLDFAL------R-------C--KGNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred ---------hhhcceEEEEecccccCCCCcHHHHHhhhh------h-------h--ccccchhhCCHHHHHHHHHHHHHh
Confidence 001112333332 2233334443332 110 0 0 146678899999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCChhHHHhhhceEEEeeCCeEEecc
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA-THIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv-sHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
.+|++|||||||++||+.+++.++++|.+++++.+.|+|++ +|+.+++.++||++++|++|+++..|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999876546665554 56678899999999999999997653
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=314.92 Aligned_cols=216 Identities=22% Similarity=0.256 Sum_probs=162.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++||+++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|++.+ ..+|.+.++|.+......
T Consensus 43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 347999999999975 5799999999999999999999999999999999998752 248999988865321000
Q ss_pred ccccCCcccccccccccccccCcc-cccccccHHH-HhhcCC--------------CC-----cHHHHHHHHHHcCCC--
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEH-MIFGVE--------------GS-----DPVRRERLIELLDID-- 143 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--------------~~-----~~~~~~~~l~~l~l~-- 143 (294)
.. ..++..++++++. .++.. +..+ +.+... .. ..+.+..+++.+++.
T Consensus 120 -----~~----~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 120 -----NL----VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred -----cH----HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 00 0011123333321 12222 3322 222110 00 122345667777762
Q ss_pred ----cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663 144 ----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT 219 (294)
Q Consensus 144 ----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d 219 (294)
.++++.+|||||+|||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||++|||++++..+||
T Consensus 190 ~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcC
Confidence 3677899999999999999999999999999999999999999999999998864 4899999999999999999
Q ss_pred eE-EEeeCCeEEecccHHHHHHh
Q 022663 220 HL-AYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 220 ~v-~~l~~G~i~~~g~~~~~~~~ 241 (294)
++ ++|++|+++..|+++++.+.
T Consensus 268 ~i~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEEEEecCCEEEEeCCHHHHHhC
Confidence 97 57899999999999887653
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.7e-42 Score=298.18 Aligned_cols=194 Identities=24% Similarity=0.286 Sum_probs=152.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||++.|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|+ +|.+.++|.+..... .
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~-~------ 69 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQR-D------ 69 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEeccccc-H------
Confidence 478999999975 57999999999999999999999999999999999998876 889988876532110 0
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCC
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPF 169 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p 169 (294)
..+..++++++ ..++...+..+.+ +.......++..++++.+++. .++++.+||||||||++|||||+.+|
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 11122333332 2233334443332 221112344567788888885 47789999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
++|||||||+|||+.++..+.+.|.++++ .|.|+|++|||...+..+|++++.+
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999998764 4899999999999999999999877
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1e-42 Score=337.64 Aligned_cols=212 Identities=22% Similarity=0.318 Sum_probs=163.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ..+|.+.++|.+.......
T Consensus 1 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~---- 73 (500)
T TIGR02633 1 LLEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR---- 73 (500)
T ss_pred CEEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH----
Confidence 4889999999965 5699999999999999999999999999999999998876 2489998888643211000
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcCC----C--Cc----HHHHHHHHHHcCCC--c-ccccccCCHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE----G--SD----PVRRERLIELLDID--L-QWRMHKVSDGQR 156 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~--~~----~~~~~~~l~~l~l~--~-~~~~~~LSgGqk 156 (294)
...+..++++++ ..++..++..+. .+... . .. ..+..++++.+++. . ++++.+||||||
T Consensus 74 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 147 (500)
T TIGR02633 74 ------DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQ 147 (500)
T ss_pred ------HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHH
Confidence 000112333333 223334444333 22211 0 11 12456778888885 2 467899999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||+||||++++..+||+|++|++|+++..++++
T Consensus 148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 999999999999999999999999999999999999999864 5899999999999999999999999999999888765
Q ss_pred HH
Q 022663 237 EL 238 (294)
Q Consensus 237 ~~ 238 (294)
++
T Consensus 227 ~~ 228 (500)
T TIGR02633 227 TM 228 (500)
T ss_pred cC
Confidence 43
No 241
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=307.06 Aligned_cols=218 Identities=20% Similarity=0.191 Sum_probs=163.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~ 86 (294)
.++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+..|. .+|.+.++|........
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999975 47999999999999999999999999999999999987641 47888887754310000
Q ss_pred ccccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC-----cHHHHHHHHHHcCCC------cccccccC
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS-----DPVRRERLIELLDID------LQWRMHKV 151 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~-----~~~~~~~~l~~l~l~------~~~~~~~L 151 (294)
.. ....++..++++++ ..++.. +. +++.+.. ... ..+....+++.+++. .++.+.+|
T Consensus 91 -----~~--~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 162 (265)
T PRK14252 91 -----EV--DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL 162 (265)
T ss_pred -----cc--CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence 00 00011122333333 122232 33 3332221 111 113345566666652 35778999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||+|||+|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||+|||+++++..+||++++|++|+++.
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 6899999999999999999999999999999
Q ss_pred cccHHHHHHh
Q 022663 232 AEKLAELDEL 241 (294)
Q Consensus 232 ~g~~~~~~~~ 241 (294)
.|+.+++...
T Consensus 241 ~g~~~~~~~~ 250 (265)
T PRK14252 241 FGATDTIFIK 250 (265)
T ss_pred eCCHHHHHhC
Confidence 9998887643
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-42 Score=304.25 Aligned_cols=215 Identities=20% Similarity=0.246 Sum_probs=163.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~~~ 88 (294)
+|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.. | ..+|.+.++|.+......
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~-- 77 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV-- 77 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--
Confidence 6899999999975 569999999999999999999999999999999999753 3 137899988865321000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCCHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVSDG 154 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LSgG 154 (294)
.. ......++++++ ..++.....+++.+.. .. .+ ..+..++++.+++. .++++.+||||
T Consensus 78 ---~~----~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14266 78 ---DV----VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG 150 (250)
T ss_pred ---cH----HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHH
Confidence 00 001122333332 2223322223332221 11 11 12345566777752 36778999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++..+||++++|++|+++..|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999999874 3 7899999999999999999999999999999999
Q ss_pred HHHHHHh
Q 022663 235 LAELDEL 241 (294)
Q Consensus 235 ~~~~~~~ 241 (294)
++++...
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14266 229 TDQIFIN 235 (250)
T ss_pred HHHHHhC
Confidence 9887544
No 243
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=327.29 Aligned_cols=206 Identities=19% Similarity=0.303 Sum_probs=163.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++++++||+++|++...+++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|....
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~-------- 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAAL-------- 89 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeee--------
Confidence 35799999999997532246999999999999999999999999999999999998876 889888775311
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hc--CCCCcH----HHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG--VEGSDP----VRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
+.+. ..+...++..+.+ +. ...... +....+++.+++. .++++.+||||||||++|
T Consensus 90 --i~~~-------------~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 90 --IAIS-------------SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred --EEec-------------cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence 0000 0011122332221 11 011111 2345677888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||+|||+.++..+++.|.++. +.|.|||++|||++++..+||++++|++|+++..|+++++...
T Consensus 155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999999999999875 4589999999999999999999999999999999998887653
No 244
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.2e-42 Score=304.90 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=157.5
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
+++||+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ . +|.+.++|.+.......
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~------- 65 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAA------- 65 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHH-------
Confidence 57788874 16999999999999999999999999999999999874 4 79999888653211000
Q ss_pred cccccccccccccCc-ccccccccHHHH-hhcCC-CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 95 YLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE-GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
.+...++++++ ..++...+..++ .+... ... .+...++++.+++. .++++.+||||||||++|||||
T Consensus 66 ----~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 66 ----ELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred ----HHhhheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 00111222222 122223343332 22211 111 23456788888885 4788999999999999999999
Q ss_pred cc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 166 LH-------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 166 ~~-------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+. +|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+++..|+.+++
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 97 6799999999999999999999999998864 489999999999999999999999999999999988876
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
.+
T Consensus 221 ~~ 222 (248)
T PRK03695 221 LT 222 (248)
T ss_pred hC
Confidence 43
No 245
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3e-42 Score=296.40 Aligned_cols=186 Identities=21% Similarity=0.239 Sum_probs=144.5
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccccccC
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
|+++|++++|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|+. .|+ .|.+.++|.+........
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~~~~~~~~--- 73 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDITDLPPEE--- 73 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEECCcCCHHH---
Confidence 478999999975 47999999999999999999999999999999999984 454 899998886532210000
Q ss_pred CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
..+..++++++. .+++..+..+ .+ +....+|||||+||++|||||+.+|+
T Consensus 74 -------~~~~~i~~v~q~~~~~~~~~~~~---------------~l-------~~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 74 -------RARLGIFLAFQYPPEIPGVKNAD---------------FL-------RYVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred -------HhhCcEEEeecChhhccCccHHH---------------HH-------hhccccCCHHHHHHHHHHHHHhcCCC
Confidence 001112222221 1122222211 11 12346899999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-hhceEEEeeCCeEEecccHH
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET-WATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-~~d~v~~l~~G~i~~~g~~~ 236 (294)
+|||||||++||+.++..++++|.++.+ .+.|||++||+++++.. +||++++|++|++.+.++.+
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 9999999999999999999999998864 48999999999999988 79999999999999988543
No 246
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.2e-42 Score=291.91 Aligned_cols=177 Identities=24% Similarity=0.418 Sum_probs=139.7
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+..|. +|.+.++|.+....
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~--------- 69 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDL--------- 69 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHH---------
Confidence 4789999999652 136999999999999999999999999999999999998776 88998887643110
Q ss_pred ccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 94 SYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
...++..++++++.+ ++. .+..++ + +.+|||||+||++|||||+.+|++|
T Consensus 70 ---~~~~~~~i~~~~q~~~~~~-~tv~~~--------------i-----------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 70 ---EKALSSLISVLNQRPYLFD-TTLRNN--------------L-----------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred ---HHHHHhhEEEEccCCeeec-ccHHHh--------------h-----------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 001112223322211 111 111110 0 6789999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||||++||+.+++.+++.|.++. .+.|||++|||++++. .||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 9999999999999999999999874 3799999999999986 69999999999997653
No 247
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.6e-42 Score=290.21 Aligned_cols=172 Identities=26% Similarity=0.376 Sum_probs=135.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. ..++++++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------- 71 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDP------- 71 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCH-------
Confidence 4789999999642 246999999999999999999999999999999999998876 8899888764321000
Q ss_pred ccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 94 SYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
..+...++++++.+ +++. +..+ .+ |||||+||++|||||+.+|++|
T Consensus 72 ----~~~~~~i~~~~q~~~~~~~-tv~~------------------~l----------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 72 ----NELGDHVGYLPQDDELFSG-SIAE------------------NI----------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred ----HHHHhheEEECCCCccccC-cHHH------------------HC----------cCHHHHHHHHHHHHHhcCCCEE
Confidence 00111222222211 1111 1111 01 9999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
||||||++||+.++..+++.|.++.+ .|.|||++|||++++. +||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 99999999999999999999998864 5899999999999885 7999999999974
No 248
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.1e-42 Score=339.53 Aligned_cols=211 Identities=24% Similarity=0.324 Sum_probs=167.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||++.|.+ ++++|+|+||+|++|++++|+||||||||||+++|+|++ |. +|.+.++|.+...-.
T Consensus 349 ~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~------- 417 (588)
T PRK11174 349 TIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELD------- 417 (588)
T ss_pred eEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCC-------
Confidence 5999999987643 257999999999999999999999999999999999999 76 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
...+++.++++++. .++.....+|+.++....+.++..++++..++. .+ .....||||||||
T Consensus 418 ----~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQR 493 (588)
T PRK11174 418 ----PESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQR 493 (588)
T ss_pred ----HHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 12234456666653 344444445555654444555555555554431 12 3445799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++||||||||+||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 494 ialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 494 LALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHH
Confidence 999999999999999999999999999999999998764 4789999999998876 5999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 571 ~~~ 573 (588)
T PRK11174 571 SQA 573 (588)
T ss_pred Hhc
Confidence 764
No 249
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-43 Score=298.92 Aligned_cols=210 Identities=25% Similarity=0.396 Sum_probs=164.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++||+++|++ +++|+|||++|++||.++|+|||||||||||++++|.+.|. +|.+.+.|...-..
T Consensus 29 ~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~------ 98 (257)
T COG1119 29 EPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKG------ 98 (257)
T ss_pred cceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCC------
Confidence 457999999999987 68999999999999999999999999999999999998887 88888777653221
Q ss_pred CCcccccccccccccccCc---ccccccccHHHHh-------hcCC--CC---cHHHHHHHHHHcCCC--cccccccCCH
Q 022663 91 GDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMI-------FGVE--GS---DPVRRERLIELLDID--LQWRMHKVSD 153 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~--~~---~~~~~~~~l~~l~l~--~~~~~~~LSg 153 (294)
+. . .++++.++++.. ..+....++.++. .+.. .. +..++..+++.+++. .+++..+||-
T Consensus 99 -~~--~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~ 174 (257)
T COG1119 99 -ET--I-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQ 174 (257)
T ss_pred -cc--h-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCH
Confidence 11 1 123344443321 1111122222221 1111 11 223456788888885 5889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR-GATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||||||.|||||+.+|++|||||||+|||...+..+.+.|.+++... +.++|+|||..+++....++++.+++|+++..
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 99999999999999999999999999999999999999999987542 57899999999999999999999999999887
Q ss_pred cc
Q 022663 233 EK 234 (294)
Q Consensus 233 g~ 234 (294)
|.
T Consensus 255 g~ 256 (257)
T COG1119 255 GK 256 (257)
T ss_pred cc
Confidence 63
No 250
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=336.22 Aligned_cols=210 Identities=18% Similarity=0.253 Sum_probs=160.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~ 90 (294)
++|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... ....
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA-GGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCEECCCCCHHHHHH
Confidence 4799999999762 3899999999999999999999999999999999998886 8999988864321000 0001
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hcCC----------C---C--cHHHHHHHHHHcCCC---cccccccC
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVE----------G---S--DPVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~---~--~~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
..+.++++... ...+++.++..+.+ +... . . ....+.++++.+++. .++++.+|
T Consensus 338 ~~i~~v~q~~~-------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 410 (510)
T PRK09700 338 KGMAYITESRR-------DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITEL 410 (510)
T ss_pred CCcEEccCccc-------cCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccC
Confidence 12223222100 01233334443322 2110 0 0 112346788888884 47889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++..+||++++|++|+++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 58999999999999999999999999999988
Q ss_pred cccH
Q 022663 232 AEKL 235 (294)
Q Consensus 232 ~g~~ 235 (294)
.++.
T Consensus 490 ~~~~ 493 (510)
T PRK09700 490 ILTN 493 (510)
T ss_pred EecC
Confidence 7654
No 251
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=286.86 Aligned_cols=207 Identities=25% Similarity=0.370 Sum_probs=166.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+++.+++++.+|++. ...+|+|+|++|.+||.++++|||||||||||++++|+..|+ .|.+.++++...... .
T Consensus 2 ~~l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~G~i~l~~r~i~gPg-----a 74 (259)
T COG4525 2 CMLNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-RGSIQLNGRRIEGPG-----A 74 (259)
T ss_pred ceeehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-cceEEECCEeccCCC-----c
Confidence 578999999999873 245999999999999999999999999999999999999987 899998887542110 0
Q ss_pred CcccccccccccccccCc-ccccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
+. +.+++ ..+.+.++. +|..|++. +.. .+...+.+...++. .++++.+|||||||||.|
T Consensus 75 er-----------gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGi 143 (259)
T COG4525 75 ER-----------GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGI 143 (259)
T ss_pred cc-----------eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHH
Confidence 11 11122 233444443 44455542 222 22345667777775 478899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee--CCeEEecccHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ--DGELRRAEKLA 236 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~--~G~i~~~g~~~ 236 (294)
||||+.+|++|+||||+++||.-+++++.++|.++.++.|+.+++||||++++.-+++++++|. .|+|+..-+++
T Consensus 144 ARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 144 ARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 47888765543
No 252
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.2e-42 Score=343.21 Aligned_cols=210 Identities=22% Similarity=0.254 Sum_probs=168.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++. ++++|+|+||+|++||.++|+|+||||||||+|+|+|++.|+ +|.+.++|.+...-.
T Consensus 451 ~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~------- 521 (686)
T TIGR03797 451 AIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLD------- 521 (686)
T ss_pred eEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCC-------
Confidence 59999999999642 357999999999999999999999999999999999999887 999999997643211
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
...+++.++++++ ..++.....+|+.++.. .+.++..++++..++. .+ .....||||||||
T Consensus 522 ----~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 522 ----VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred ----HHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 1123445555555 33444433455555533 4555566666665542 12 2345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++||||||||+||+.+.+.+.+.|.++ ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999998764 5799999999998865 999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 672 l~~ 674 (686)
T TIGR03797 672 MAR 674 (686)
T ss_pred HhC
Confidence 764
No 253
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.2e-42 Score=298.06 Aligned_cols=196 Identities=21% Similarity=0.298 Sum_probs=147.1
Q ss_pred EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663 16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 95 (294)
++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ .|.+.++|.+....... ..
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~----~~-- 70 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD-SGQVYLNGKETPPLNSK----KA-- 70 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccchh----hH--
Confidence 4799999975 47999999999999999999999999999999999998876 88998888653210000 00
Q ss_pred ccccccccccccCc-ccccccccHHHHh-hcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 96 LGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
.......++++.+ ..++...+..+++ +.. ... ..+++.++++.+++. .++++.+|||||+||++|||||
T Consensus 71 -~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 71 -SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred -HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence 0001112233222 2233334443322 211 111 123456788888885 5788899999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||+++++ .+||++++|
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999999999998865 489999999999976 589999875
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-42 Score=335.82 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=162.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~ 90 (294)
++|+++|++++|+++++..+|+|+||+|.+||+++|+||||||||||+|+|+|++.|..+|.+.++|.+...... ....
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 379999999999421124699999999999999999999999999999999999875348999888864321000 0001
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hc----CC---CCc----HHHHHHHHHHcCCC---cccccccCCHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG----VE---GSD----PVRRERLIELLDID---LQWRMHKVSDGQ 155 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~---~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq 155 (294)
..+.++++.... ..+++.++..+.+ +. .. ... ...+.++++.+++. .++++.+|||||
T Consensus 336 ~~i~~v~q~~~~-------~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 336 AGIAMVPEDRKR-------HGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred CCCEEcCcchhh-------CCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 122332222100 0123333333222 11 00 111 22456788888884 478899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++.++||++++|++|+++...+.
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~ 487 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999998865 489999999999999999999999999999887654
Q ss_pred H
Q 022663 236 A 236 (294)
Q Consensus 236 ~ 236 (294)
+
T Consensus 488 ~ 488 (500)
T TIGR02633 488 H 488 (500)
T ss_pred c
Confidence 4
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.9e-42 Score=290.82 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=138.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......
T Consensus 3 ~~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~---- 70 (182)
T cd03215 3 PVLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPR---- 70 (182)
T ss_pred cEEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHH----
Confidence 479999999987 799999999999999999999999999999999998876 89998888643211000
Q ss_pred CcccccccccccccccCcc----cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHcc
Q 022663 92 DLSYLGGSWSKTVGSAGEI----PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
...+..++++++. .++...+..+.+.. . ..||||||||++|||||+.
T Consensus 71 ------~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~---------------~--------~~LS~G~~qrl~la~al~~ 121 (182)
T cd03215 71 ------DAIRAGIAYVPEDRKREGLVLDLSVAENIAL---------------S--------SLLSGGNQQKVVLARWLAR 121 (182)
T ss_pred ------HHHhCCeEEecCCcccCcccCCCcHHHHHHH---------------H--------hhcCHHHHHHHHHHHHHcc
Confidence 0011122222221 12222232221100 0 0199999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+|++|||||||+|||+.++..+.+.|.++.+ .+.|+|++|||++++.++||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998864 489999999999999999999999999974
No 256
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.1e-42 Score=293.16 Aligned_cols=184 Identities=21% Similarity=0.351 Sum_probs=143.7
Q ss_pred cEEEcceEEEcCCC---CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccc
Q 022663 13 SIKVCGMQFSYEGN---DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 13 ~l~~~~ls~~y~~~---~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~ 87 (294)
.|+++||+++|++. ..+++|+++||+|++||+++|+||||||||||+++|+|++ .|. .|.+.++|.+....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~--- 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKR--- 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchH---
Confidence 58999999999641 0146999999999999999999999999999999999998 775 89998888653210
Q ss_pred cccCCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+...++++++ ..++...+..+.+. +... ..+|||||+||++|||||+
T Consensus 79 -----------~~~~~i~~~~q~~~~~~~~t~~~~i~------------~~~~--------~~~LS~G~~qrv~laral~ 127 (194)
T cd03213 79 -----------SFRKIIGYVPQDDILHPTLTVRETLM------------FAAK--------LRGLSGGERKRVSIALELV 127 (194)
T ss_pred -----------hhhheEEEccCcccCCCCCcHHHHHH------------HHHH--------hccCCHHHHHHHHHHHHHH
Confidence 01112333332 12222333322210 0000 1189999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeEEec
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 232 (294)
.+|++|||||||++||+.+++.+.+.|.++.+ .+.|||++|||++ ++..+||++++|++|+++..
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999998764 4899999999996 78889999999999998765
No 257
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-42 Score=345.22 Aligned_cols=217 Identities=23% Similarity=0.295 Sum_probs=177.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+|+|+.+.+.++|+++||.|++|+.++|||||||||||++++|.+++.|+ .|.|.++|.+...-.
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~-~G~V~idG~di~~~~------ 421 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT-SGEVLIDGEDIRNLN------ 421 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CceEEEcCccchhcc------
Confidence 3699999999998755567999999999999999999999999999999999999997 999999998753211
Q ss_pred CcccccccccccccccCcccc-cccccHHHHhhcCCCCcHHHHHHHHHHcCC-------------CcccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPL-QGDFSAEHMIFGVEGSDPVRRERLIELLDI-------------DLQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------------~~~~~~~~LSgGqkq 157 (294)
...++..++.+.+.|. +.....+|+.++.+....+...++.+..+. ....+..+|||||||
T Consensus 422 -----~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 422 -----LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred -----hHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 1123446666666444 444445666777766555555555544331 122344569999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|+||||||+.+|+||||||||++||+++...+.+.|.+.. .|.|.|+|+|++..+.+ +|+|++|++|+|++.|+.+|
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999998764 48899999999999997 99999999999999999999
Q ss_pred HHHhhh
Q 022663 238 LDELRN 243 (294)
Q Consensus 238 ~~~~~~ 243 (294)
+....+
T Consensus 574 Li~~~G 579 (1228)
T KOG0055|consen 574 LIALGG 579 (1228)
T ss_pred HHhccc
Confidence 987653
No 258
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.5e-42 Score=344.78 Aligned_cols=211 Identities=22% Similarity=0.288 Sum_probs=167.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++. ++++|+|+||+|++||.++|+||||||||||+|+|+|++.|+ +|.+.++|.+...-.
T Consensus 477 ~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~------- 547 (710)
T TIGR03796 477 YVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIP------- 547 (710)
T ss_pred eEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCC-------
Confidence 69999999999752 357999999999999999999999999999999999999886 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR 158 (294)
...+++.++++++. .++.....+++.++....+.++..++++..++. . ......||||||||
T Consensus 548 ----~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 548 ----REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred ----HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 11234455555553 344443344544443334455555555554431 1 23346799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++||||||||+||+.+...+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999864 37999999999998865 999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 699 l~~ 701 (710)
T TIGR03796 699 WAV 701 (710)
T ss_pred HHc
Confidence 764
No 259
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=332.26 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=162.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+.+..
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~----------- 382 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKWSENA----------- 382 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCce-----------
Confidence 48999999999975 46999999999999999999999999999999999998876 7888776531
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcC--CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+.++++... ..+....+..+.+... .....+.+..+++.+++. .++++.+|||||||||+|||||+
T Consensus 383 ~i~~~~q~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 383 NIGYYAQDHA--------YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEEEccccc--------ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence 1233322110 0112223333322111 112234567788899883 47889999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHHHHh
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAELDEL 241 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~ 241 (294)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|++.++.+.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999998764 459999999999999999999999999997 78888877654
No 260
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-41 Score=294.54 Aligned_cols=193 Identities=22% Similarity=0.303 Sum_probs=151.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||++.|++ ..+|+++||+|++||+++|+||||||||||+++|+|+..|+ +|.+.++|.+... ..
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~-~~------ 70 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-AGTIKLDGGDIDD-PD------ 70 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeCcc-hh------
Confidence 6999999999975 46999999999999999999999999999999999998776 8999888754210 00
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hc--CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+..++++++ ..++...+..+.+ +. ........+.++++.+++. .++++++||||||||++|||||+
T Consensus 71 -------~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 143 (207)
T PRK13539 71 -------VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV 143 (207)
T ss_pred -------hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHh
Confidence 1112222221 2223334443322 21 1122234567788888885 47788999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
.+|++|||||||+|||+.++..++++|.++.+ .|.|||++||+++++.. |+++.+..
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeecC
Confidence 99999999999999999999999999998765 48999999999999986 99887744
No 261
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-41 Score=302.07 Aligned_cols=213 Identities=17% Similarity=0.144 Sum_probs=157.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++|++++|++. .+.+|+++||+|++||+++|+|+||||||||+++|+|++.|. +|.+.++|.+.......
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~---- 91 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF-DGKIVIDGIDISKLPLH---- 91 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC-CCeEEECCEEhhhCCHH----
Confidence 469999999999642 246999999999999999999999999999999999998776 89999888653211100
Q ss_pred CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHH---------HHHc--CCC--cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERL---------IELL--DID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~l--~l~--~~~~~~~LSgGqkq 157 (294)
.++..++++++. .++. .+..+...............+ ++.+ +++ .+..+.+||+||+|
T Consensus 92 -------~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~q 163 (257)
T cd03288 92 -------TLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQ 163 (257)
T ss_pred -------HHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHH
Confidence 011122222221 1222 122222211101111112222 2222 222 34567899999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++|||||+.+|++|||||||+|||+.++..++++|.++. .+.|||++||+++.+.. ||+|++|++|+++..|++++
T Consensus 164 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 164 LFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998863 37999999999999986 99999999999999999888
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 241 ~~~~ 244 (257)
T cd03288 241 LLAQ 244 (257)
T ss_pred HHhc
Confidence 7553
No 262
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=302.85 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=158.2
Q ss_pred cEEEcceEEEcCCC-----------------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE
Q 022663 13 SIKVCGMQFSYEGN-----------------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ 75 (294)
Q Consensus 13 ~l~~~~ls~~y~~~-----------------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~ 75 (294)
.++++||++.|... ..+++|+++||+|++||+++|+||||||||||+++|+|+++|+ .|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G~I~ 82 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VGKVD 82 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEE
Confidence 58899999988531 1235899999999999999999999999999999999998876 88888
Q ss_pred ecCCcccccccccccCCcccccccccccccccCcccccccccHHH-Hhhc--CCCCcH----HHHHHHHHHcCCC--ccc
Q 022663 76 VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFG--VEGSDP----VRRERLIELLDID--LQW 146 (294)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~----~~~~~~l~~l~l~--~~~ 146 (294)
++|.... ..+. ..+.+.++..+ +.+. ...... .....+++.+++. .++
T Consensus 83 ~~g~~~~-------------~~~~----------~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (264)
T PRK13546 83 RNGEVSV-------------IAIS----------AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ 139 (264)
T ss_pred ECCEEeE-------------Eecc----------cCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 7764211 0000 00111122222 1111 111111 1234566666664 477
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
++.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|.++. +.|.|||++||+++++..+||+|++|++
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 889999999999999999999999999999999999999999999999885 4589999999999999999999999999
Q ss_pred CeEEecccHHHHHHh
Q 022663 227 GELRRAEKLAELDEL 241 (294)
Q Consensus 227 G~i~~~g~~~~~~~~ 241 (294)
|+++..|+.+++...
T Consensus 219 G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 219 GKLKDYGELDDVLPK 233 (264)
T ss_pred CEEEEeCCHHHHHHH
Confidence 999999998887653
No 263
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=332.63 Aligned_cols=199 Identities=26% Similarity=0.333 Sum_probs=154.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +++|+|+||+|.+||+++|+||||||||||||+|+|+++|+ .|.+.+.+.. .
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~-----------~ 65 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AGNVSLDPNE-----------R 65 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCC-----------E
Confidence 4899999999975 57999999999999999999999999999999999998876 7888776531 1
Q ss_pred cccccccccccccccCcccccccccHHHH--------------------------------------hhcCCCC-cHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHM--------------------------------------IFGVEGS-DPVRR 133 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~-~~~~~ 133 (294)
+.+.++.. .++..++..+. ....... ...++
T Consensus 66 i~~~~q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (530)
T PRK15064 66 LGKLRQDQ----------FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARA 135 (530)
T ss_pred EEEEeccC----------CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHH
Confidence 11111110 00000010000 0000011 12345
Q ss_pred HHHHHHcCCC--c-ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663 134 ERLIELLDID--L-QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210 (294)
Q Consensus 134 ~~~l~~l~l~--~-~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd 210 (294)
.++++.+++. . ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.+ .|.|||+||||
T Consensus 136 ~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd 211 (530)
T PRK15064 136 GELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHD 211 (530)
T ss_pred HHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCC
Confidence 6788888885 2 467899999999999999999999999999999999999999999998853 48999999999
Q ss_pred hhHHHhhhceEEEeeCCeE-EecccHHHHHH
Q 022663 211 FDGLETWATHLAYIQDGEL-RRAEKLAELDE 240 (294)
Q Consensus 211 ~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~~ 240 (294)
++++..+||+|++|++|++ ++.|+++++.+
T Consensus 212 ~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 212 RHFLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999999999999 47888887754
No 264
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-42 Score=321.69 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=171.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc-ccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD-TQLVC 89 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~-~~~~~ 89 (294)
.+.++++|++|+|++ .++|++|||+|.+||++||+|.||||||||+|+|+|.+.|+ +|.|.++|+..... .....
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~-~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC-CceEEECCEEccCCCHHHHH
Confidence 458999999999987 67999999999999999999999999999999999999987 99999998754211 10000
Q ss_pred cCCcccccccccccccccC-cccccccccHHHHhh-cCCC------CcH----HHHHHHHHHcCCC--cccccccCCHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIF-GVEG------SDP----VRRERLIELLDID--LQWRMHKVSDGQ 155 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~------~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 155 (294)
...+..+. +..+.++++..+++| +... .++ .+..++++.+++. ++.++.+||.||
T Consensus 82 -----------~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaq 150 (500)
T COG1129 82 -----------AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQ 150 (500)
T ss_pred -----------hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHH
Confidence 11122222 245667777655543 3221 122 2345677777764 788899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||.|+|||||..++++||||||||+|+....+.++++++++. ++|.+||+|||.++++.++||||.+|.||+.+...+.
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999999999999986 4699999999999999999999999999999988773
Q ss_pred -HHH
Q 022663 236 -AEL 238 (294)
Q Consensus 236 -~~~ 238 (294)
.++
T Consensus 230 ~~~~ 233 (500)
T COG1129 230 AAET 233 (500)
T ss_pred ccCC
Confidence 443
No 265
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1e-41 Score=336.35 Aligned_cols=213 Identities=23% Similarity=0.287 Sum_probs=167.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++. ++++|+|+||+|++||.++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 341 ~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~------- 411 (582)
T PRK11176 341 DIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID-EGEILLDGHDLRDYT------- 411 (582)
T ss_pred eEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC-CceEEECCEEhhhcC-------
Confidence 59999999999652 357999999999999999999999999999999999999886 899999887542211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC---------cc----cccccCCHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID---------LQ----WRMHKVSDGQRR 157 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkq 157 (294)
...++..++++++. .+++....+++.++... .+.++..++++..++. .+ ....+|||||||
T Consensus 412 ----~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 412 ----LASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred ----HHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 01233445555553 34444334555554322 3455556666655431 22 234569999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++|||||+++|++|||||||++||+.+...+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998764 3789999999998765 599999999999999999999
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 565 l~~~ 568 (582)
T PRK11176 565 LLAQ 568 (582)
T ss_pred HHhC
Confidence 8765
No 266
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-41 Score=291.80 Aligned_cols=187 Identities=22% Similarity=0.325 Sum_probs=138.9
Q ss_pred EEEcceEEEcCCCCC--CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 14 IKVCGMQFSYEGNDK--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 14 l~~~~ls~~y~~~~~--~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
|+++||+++|++... +++|+++||+|++||+++|+||||||||||+++|+|+..|+ +|.+.++|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~-~G~i~~~g~------------ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL-SGSVSVPGS------------ 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CCeEEEcCE------------
Confidence 578999999975210 36999999999999999999999999999999999998876 888887761
Q ss_pred CcccccccccccccccCcccccccccHHHHh-hcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkq 157 (294)
+.+.++. ..++ ..+..+++ +... .......++++.+++ . .++.+.+||+||||
T Consensus 68 -i~~~~q~----------~~l~-~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~q 134 (204)
T cd03250 68 -IAYVSQE----------PWIQ-NGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQ 134 (204)
T ss_pred -EEEEecC----------chhc-cCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHH
Confidence 2222211 1111 12332222 2211 111122222222221 1 34567899999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
|++|||||+.+|++|||||||++||+.+++.+++. +..+.+ .|.|||++||+++.+.. ||++++|++|+
T Consensus 135 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 99999999999999999999999999999999984 555544 48999999999999987 99999999985
No 267
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-41 Score=334.45 Aligned_cols=215 Identities=20% Similarity=0.370 Sum_probs=171.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 337 ~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G~I~i~g~~i~~~~------ 408 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QGEILLNGQPIADYS------ 408 (574)
T ss_pred CeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCC------
Confidence 369999999999652 246999999999999999999999999999999999999887 899999887543211
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cc----------cccccCCHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQ----------WRMHKVSDGQRRR 158 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~----------~~~~~LSgGqkqR 158 (294)
...++..++++++ ..++.....+|+.++....+.+...++++.+++. .+ .....||||||||
T Consensus 409 -----~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 409 -----EAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred -----HHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 1123344555554 3344443345554554444555667777777653 11 2456799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999998874 37899999999998865 999999999999999999998
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+..
T Consensus 561 ~~~~ 564 (574)
T PRK11160 561 LAQQ 564 (574)
T ss_pred HhcC
Confidence 7643
No 268
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-41 Score=332.44 Aligned_cols=202 Identities=26% Similarity=0.270 Sum_probs=156.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++||+++||+++|++ ++++|+|+||+|++|++++|+||||||||||||+|+|++.|+ +|.+.+.+..
T Consensus 4 ~~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~-~G~i~~~~~~---------- 70 (556)
T PRK11819 4 QYIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-EGEARPAPGI---------- 70 (556)
T ss_pred cEEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCC----------
Confidence 358999999999972 157999999999999999999999999999999999998886 7888765321
Q ss_pred CCcccccccccccccccCcccccccccHHHH-hhc-----------------------------------------CCCC
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFG-----------------------------------------VEGS 128 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------------------------------~~~~ 128 (294)
.+.++++.. .+++.++..++ .++ ...+
T Consensus 71 -~i~~v~Q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (556)
T PRK11819 71 -KVGYLPQEP----------QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW 139 (556)
T ss_pred -EEEEEecCC----------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcc
Confidence 122222211 01111111111 000 0000
Q ss_pred c-HHHHHHHHHHcCCC-cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 022663 129 D-PVRRERLIELLDID-LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206 (294)
Q Consensus 129 ~-~~~~~~~l~~l~l~-~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii 206 (294)
+ ..++..+++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+
T Consensus 140 ~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tvii 215 (556)
T PRK11819 140 DLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVA 215 (556)
T ss_pred chHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEE
Confidence 1 23456677888874 57889999999999999999999999999999999999999999999998864 359999
Q ss_pred EeCChhHHHhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663 207 ATHIFDGLETWATHLAYIQDGELR-RAEKLAELDE 240 (294)
Q Consensus 207 vsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 240 (294)
||||++++..+||+|++|++|+++ +.|+++++.+
T Consensus 216 isHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 216 VTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999999999999986 7888877644
No 269
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-41 Score=334.94 Aligned_cols=211 Identities=18% Similarity=0.222 Sum_probs=169.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|++.|+ +|.+.++|.+...-
T Consensus 340 ~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~-------- 408 (592)
T PRK10790 340 RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSL-------- 408 (592)
T ss_pred eEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEhhhC--------
Confidence 5999999999974 256999999999999999999999999999999999999887 89999988754221
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
....+++.++++++ ..+++....+|+.++. ..+.++..++++.+++. .+ .....||||||||
T Consensus 409 ---~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR 484 (592)
T PRK10790 409 ---SHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL 484 (592)
T ss_pred ---CHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 11123445555555 3445544445555543 34455666666666542 12 2345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 485 ialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998864 3689999999998776 5999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 562 ~~~ 564 (592)
T PRK10790 562 LAA 564 (592)
T ss_pred HhC
Confidence 755
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-42 Score=279.74 Aligned_cols=203 Identities=20% Similarity=0.299 Sum_probs=167.6
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.++++++.+.-++ .++|+++||++.+||.++|+||||||||||+|+++-++.|+ +|.+.+.|++......
T Consensus 3 lle~kq~~y~a~~---a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~-~G~l~f~Ge~vs~~~p------ 72 (223)
T COG4619 3 LLELKQVGYLAGD---AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDVSTLKP------ 72 (223)
T ss_pred chHHHHHHhhcCC---CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC-CceEEEcCccccccCh------
Confidence 4667776655443 67999999999999999999999999999999999999887 9999999987543222
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcC----CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV----EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAra 164 (294)
..++..+.|+.+ +.+++.....+++|.. ...+......+++.+++. +++.+.+|||||+||++|+|-
T Consensus 73 -----ea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~ 147 (223)
T COG4619 73 -----EAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRN 147 (223)
T ss_pred -----HHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHH
Confidence 223334444443 4466666556665543 224556667888889885 688999999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|..-|+||||||||++||+.+++.+.++|.++.+++..++++||||.+.+.+++|+++-+..|++-
T Consensus 148 Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 148 LQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred hhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999999999999999999888999999999999999999999999998763
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.6e-41 Score=341.50 Aligned_cols=212 Identities=21% Similarity=0.282 Sum_probs=165.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++..++++|+|+||+|++||+++|+||||||||||+++|+|++.|. +|.|.++|.+.....
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~------- 549 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-GGQVLLDGVPLVQYD------- 549 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcC-------
Confidence 599999999997532357999999999999999999999999999999999999887 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
...+++.+++++|. .++.....+|+.++....+.+...++++..++. ......+||||||||
T Consensus 550 ----~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQR 625 (711)
T TIGR00958 550 ----HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQR 625 (711)
T ss_pred ----HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHH
Confidence 11233445555553 344443445555554444455555666655431 123345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++||||++++|+||||||||++||+++...+.+ .. ...++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 626 lalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 626 IAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHH
Confidence 999999999999999999999999999988888 22 124789999999999876 5999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 701 ~~~ 703 (711)
T TIGR00958 701 MED 703 (711)
T ss_pred HhC
Confidence 764
No 272
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.5e-41 Score=339.67 Aligned_cols=213 Identities=25% Similarity=0.316 Sum_probs=168.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++. .+++|+|+||+|++||.++|+||||||||||+|+|+|++.|+ +|.+.++|.+...-.
T Consensus 463 ~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~------- 533 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQID------- 533 (694)
T ss_pred eEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCC-------
Confidence 59999999999642 357999999999999999999999999999999999999887 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
...++..++++++. .++.....+++.++....+.++..++++..++. .......||||||||
T Consensus 534 ----~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 534 ----PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred ----HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 11234455555553 344443344554443334455555555555431 123446799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHH
Confidence 999999999999999999999999999999999998864 3799999999999875 6999999999999999999988
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 653
No 273
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-41 Score=291.67 Aligned_cols=192 Identities=22% Similarity=0.364 Sum_probs=148.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... .
T Consensus 1 ml~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~-~----- 70 (200)
T PRK13540 1 MLDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDL-C----- 70 (200)
T ss_pred CEEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeeEEECCCccccCH-H-----
Confidence 4899999999975 57999999999999999999999999999999999998876 899999886542110 0
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCC-CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE-GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
.++..++++++ ..+++..+..+ +.+... ........++++.+++. .++++.+|||||+||++||||++.
T Consensus 71 ------~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 71 ------TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred ------HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc
Confidence 01122333332 22223344433 322211 11223567788888874 467789999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~ 222 (294)
+|++|||||||+|||+.++..+.++|.++.+ .|.|||++||+.+++.. ||..+
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence 9999999999999999999999999998754 58999999999998876 77654
No 274
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-41 Score=295.83 Aligned_cols=204 Identities=23% Similarity=0.329 Sum_probs=149.9
Q ss_pred cEEEcceEEEcCCC---C-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC----ccccc
Q 022663 13 SIKVCGMQFSYEGN---D-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR----SSFHD 84 (294)
Q Consensus 13 ~l~~~~ls~~y~~~---~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~----~~~~~ 84 (294)
||+++||+++|++. + ...+|+|+||+|++||+++|+||||||||||+++|+|++.|+ .|.+.+++. +....
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD-SGRILVRHEGAWVDLAQA 79 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEEecCCCccchhhc
Confidence 48999999999631 1 136999999999999999999999999999999999998876 888888632 21100
Q ss_pred ccccccCCcccccccccccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC---cccccccCCH
Q 022663 85 TQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID---LQWRMHKVSD 153 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSg 153 (294)
... .. .......++++++ ..+++.++..+++ +.. .... .+...++++.+++. .++++.+|||
T Consensus 80 ~~~----~~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 152 (224)
T TIGR02324 80 SPR----EV---LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSG 152 (224)
T ss_pred CHH----HH---HHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCH
Confidence 000 00 0000112233332 2233344443332 111 1111 23446678888874 2568899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
|||||++|||||+.+|++|||||||++||+.++..+.++|.++.+ .|.|||++|||++++..+||+++.+.
T Consensus 153 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999999999999999999999999998854 58999999999999999999998763
No 275
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=289.98 Aligned_cols=185 Identities=22% Similarity=0.295 Sum_probs=142.4
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|+++|+++.|++.. ++++|+++||+|++||+++|+||||||||||+++|+|+.. +...|.+.++|.+...
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~------- 75 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK------- 75 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHH-------
Confidence 689999999996411 1469999999999999999999999999999999999753 2348888888764310
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCC
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPF 169 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p 169 (294)
.+...+++.++ ..++...+..+++.. ... + .+|||||+||++|||||+.+|
T Consensus 76 --------~~~~~i~~~~q~~~~~~~~tv~~~l~~---------~~~---~--------~~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 76 --------NFQRSTGYVEQQDVHSPNLTVREALRF---------SAL---L--------RGLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred --------HhhhceEEecccCccccCCcHHHHHHH---------HHH---H--------hcCCHHHhHHHHHHHHHhcCC
Confidence 01112222222 122333333332210 000 0 189999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeC-CeEEecc
Q 022663 170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQD-GELRRAE 233 (294)
Q Consensus 170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~g 233 (294)
++|||||||++||+.++..+++.|.++.+ .|.|||++||+++ .+..+||++++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999998764 4899999999998 47889999999999 9998754
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.7e-41 Score=331.95 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=165.6
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++ ++++|+|+||++++||+++|+|+||||||||+|+|+|++.|. +|.+.++|.+...-.
T Consensus 334 ~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~-~G~I~i~g~~i~~~~------- 403 (588)
T PRK13657 334 AVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ-SGRILIDGTDIRTVT------- 403 (588)
T ss_pred eEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEEhhhCC-------
Confidence 5999999999974 246999999999999999999999999999999999999886 899999887543211
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
...++..++++++ ..++.....+++.++....+.++...+++.+++. .+ .....||||||||
T Consensus 404 ----~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 404 ----RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred ----HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 1123344555555 3344443345555543333444444555544421 12 3345699999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++|||||||++||+.+...+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998763 3799999999998775 6999999999999999999988
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 557 ~~~ 559 (588)
T PRK13657 557 VAR 559 (588)
T ss_pred HHC
Confidence 654
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=284.82 Aligned_cols=170 Identities=29% Similarity=0.417 Sum_probs=132.7
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++. ...+|+++||+|++|++++|+||||||||||+++|+|++.|. +|.+.++|........
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~------- 71 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDL------- 71 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCH-------
Confidence 4789999999752 136999999999999999999999999999999999998876 8888888764321000
Q ss_pred ccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 94 SYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
..++..+++.++.+ ++. .+. .+.+ ||+||+|||+|||||+.+|++|
T Consensus 72 ----~~~~~~i~~~~~~~~~~~-~t~------------------~e~l----------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 72 ----ESLRKNIAYVPQDPFLFS-GTI------------------RENI----------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred ----HHHHhhEEEEcCCchhcc-chH------------------HHHh----------hCHHHHHHHHHHHHHhcCCCEE
Confidence 00111122222211 110 011 0111 9999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
||||||+|||+.++..+.++|.++. + +.|||++|||++++.. ||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999874 3 6899999999999987 99999999884
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-41 Score=328.11 Aligned_cols=210 Identities=23% Similarity=0.359 Sum_probs=158.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.++..+|.+.++|.+........
T Consensus 258 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~-- 332 (490)
T PRK10938 258 EPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW-- 332 (490)
T ss_pred CceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH--
Confidence 458999999999975 469999999999999999999999999999999999765424789988886431100000
Q ss_pred CCcccccccccccccccCcc-cc-c-ccccHHHHhh-cC------C-CCc---HHHHHHHHHHcCCC---cccccccCCH
Q 022663 91 GDLSYLGGSWSKTVGSAGEI-PL-Q-GDFSAEHMIF-GV------E-GSD---PVRRERLIELLDID---LQWRMHKVSD 153 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~-~~------~-~~~---~~~~~~~l~~l~l~---~~~~~~~LSg 153 (294)
..+..++++++. .+ . ...+..++.. .. . ... .+++.++++.+++. .++++.+|||
T Consensus 333 --------~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 404 (490)
T PRK10938 333 --------DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSW 404 (490)
T ss_pred --------HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCH
Confidence 011122332221 11 1 1123333321 10 0 111 23456788888885 3678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-hhceEEEeeCCeEEec
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET-WATHLAYIQDGELRRA 232 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-~~d~v~~l~~G~i~~~ 232 (294)
||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.+.|||+||||++++.. +||++++|++|+++..
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999999999999876534579999999999987 5999999999998765
Q ss_pred c
Q 022663 233 E 233 (294)
Q Consensus 233 g 233 (294)
.
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
No 279
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-41 Score=272.74 Aligned_cols=217 Identities=23% Similarity=0.337 Sum_probs=172.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++++++.|+. ..+|-||+|+.++||.+.++||||+|||||+|.+.=+..|. +|...+.+........ ..+
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~-sg~l~ia~~~fd~s~~---~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKT---PSD 74 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC-CCeEEecccccccccC---ccH
Confidence 5899999999986 57899999999999999999999999999999998777776 7887776543211000 001
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcC----CCC-c---HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV----EGS-D---PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~-~---~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.....++..++++++ +.+.+.+++.+++... .+. + ..+..++++.+.+. .|+.|-.|||||+|||+|
T Consensus 75 --k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 75 --KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred --HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 111234556776654 5667777765443211 111 1 22345677777775 689999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
||||+.+|++|++||||++|||+-..++.++|+++. +.|.|-++|||..+.+.+.+.+|+.|++|+|++.|+.+-+.
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 999999999999999999999999999999999986 46999999999999999999999999999999999987653
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.2e-41 Score=330.33 Aligned_cols=212 Identities=26% Similarity=0.357 Sum_probs=170.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++ ++++|+|+||++++||.+||+||||||||||+++|+|++.|. .|.|.++|.+...-.
T Consensus 328 ~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~------- 397 (567)
T COG1132 328 SIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDIS------- 397 (567)
T ss_pred eEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcC-------
Confidence 4999999999984 268999999999999999999999999999999999999886 899999887643211
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkqR 158 (294)
...++..+++++| ..++.....+|+.++......+...++++..++ + .......||||||||
T Consensus 398 ----~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr 473 (567)
T COG1132 398 ----LDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473 (567)
T ss_pred ----HHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence 1224455666655 345554445666666554444555555444322 1 123445799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++||||++.+|++||||||||+||+.+...+.+.+.++. +++|+|+|+|++..+.. ||+|++|++|++++.|+++++
T Consensus 474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999998765 36799999999998887 999999999999999999999
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 551 l~~ 553 (567)
T COG1132 551 LAK 553 (567)
T ss_pred HHc
Confidence 875
No 281
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.3e-41 Score=338.67 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=167.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|+. ++++|+|+||+|++|+.++|+||||||||||+|+|+|++.|+ +|.+.++|.+...-.
T Consensus 473 ~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~------- 542 (708)
T TIGR01193 473 DIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDID------- 542 (708)
T ss_pred cEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-CcEEEECCEEHHHcC-------
Confidence 5999999999974 357999999999999999999999999999999999999887 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcC-CCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV-EGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRR 157 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkq 157 (294)
...++..++++++. .++.....+++.++. ...+.++..++++..++. . ......|||||||
T Consensus 543 ----~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 543 ----RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred ----HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 11234455666553 344443345555542 334445555555554431 1 2344679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++|||||+++|++|||||||++||+.+.+.+.+.|.++ .++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999864 3789999999999775 699999999999999999999
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 695 L~~~ 698 (708)
T TIGR01193 695 LLDR 698 (708)
T ss_pred HHhc
Confidence 8754
No 282
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=295.83 Aligned_cols=211 Identities=21% Similarity=0.339 Sum_probs=177.4
Q ss_pred eEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccc
Q 022663 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGG 98 (294)
Q Consensus 19 ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (294)
+.+++++ ..| +++|+.+.-.+++|-|+||||||||+|+|+|+..|+ .|.|.++|........ .+ +-.
T Consensus 6 ~~~~lG~----~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd-eG~I~lngr~L~Ds~k-----~i--~lp 72 (352)
T COG4148 6 FRQRLGN----FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVLVDAEK-----GI--FLP 72 (352)
T ss_pred hhhhcCc----eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc-ccEEEECCEEeecccC-----Cc--ccC
Confidence 4455543 333 799999886899999999999999999999999998 9999998875443211 11 112
Q ss_pred cccccccccCc-ccccccccHH-HHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEe
Q 022663 99 SWSKTVGSAGE-IPLQGDFSAE-HMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174 (294)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlL 174 (294)
..++.++|+++ ..+|+.+++. |+.|+.........+++.+.|++. ++++|..|||||||||+|+|||+..|++|||
T Consensus 73 ~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLm 152 (352)
T COG4148 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred hhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeee
Confidence 23456777776 5677877754 455666555566788999999996 6999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 175 DEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||.++||...+.+++-+|.++.++....|++|||.++++.++||+|++|++|++...|+.+++....
T Consensus 153 DEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 153 DEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred cCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999987653
No 283
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-40 Score=289.95 Aligned_cols=200 Identities=23% Similarity=0.288 Sum_probs=144.7
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 94 (294)
.+.|+.++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~------ 72 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL-EGKVHWSNKNESEPSFEA------ 72 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCcccccccccc------
Confidence 57899999975 257999999999999999999999999999999999998776 899988876432110000
Q ss_pred cccccccccccccCcc-cccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHH
Q 022663 95 YLGGSWSKTVGSAGEI-PLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv 159 (294)
.....+..++++++. .++ ..+..+++ +.. ........++++.+++. .+.++..|||||+|||
T Consensus 73 -~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03290 73 -TRSRNRYSVAYAAQKPWLL-NATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI 149 (218)
T ss_pred -cchhhcceEEEEcCCCccc-cccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH
Confidence 000011123333332 222 23433333 221 11222334444544431 2356889999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH--HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLD--FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~--~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
+|||||+.+|++|||||||++||+.++..+++ ++..+ ++.|.|+|++||+.+++. .||++++|++|.
T Consensus 150 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 150 CVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 99999999999999999999999999999998 55544 445899999999999985 699999999874
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4e-41 Score=288.83 Aligned_cols=191 Identities=23% Similarity=0.267 Sum_probs=145.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+......
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------- 69 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD-SGEVRWNGTALAEQRD------- 69 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccchH-------
Confidence 578999999975 57999999999999999999999999999999999998776 8899888864321100
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hc--CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
.+...++++++ ..++...+..+.+ +. ..........++++.+++. .++++.+|||||||||+||||++.
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 70 -----EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred -----HhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc
Confidence 01112222222 1222333433322 21 1111233466788888885 578899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~ 223 (294)
+|++|||||||+|||+.++..+.++|.++.+ .|.|||++||+...+ .|++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence 9999999999999999999999999998764 589999999998644 4677764
No 285
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4e-41 Score=359.84 Aligned_cols=216 Identities=21% Similarity=0.331 Sum_probs=175.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+|+|++. .+.+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt-sG~I~i~G~~i~~~~~----- 2008 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDATVAGKSILTNIS----- 2008 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECcchHH-----
Confidence 479999999999741 246999999999999999999999999999999999999887 8999998875421100
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-h--cCCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F--GVEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..+..+++.++ ..++..++..+.+ + ...+.. .+.++++++.+++. .++++++|||||||||+|
T Consensus 2009 -------~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2009 -------DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred -------HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 11223444444 2345556665543 1 111211 22345678888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+||+.+|+||||||||+|||+.+++.+++.|.+++++ |+|||++||++++++.+||||++|++|+++..|+++++.+.
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999999998654 89999999999999999999999999999999999998654
Q ss_pred h
Q 022663 242 R 242 (294)
Q Consensus 242 ~ 242 (294)
.
T Consensus 2161 ~ 2161 (2272)
T TIGR01257 2161 F 2161 (2272)
T ss_pred h
Confidence 3
No 286
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-41 Score=315.00 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=175.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|+. ++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|.|.++|.+...-..
T Consensus 351 ~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~------ 420 (591)
T KOG0057|consen 351 SIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSL------ 420 (591)
T ss_pred cEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhCh------
Confidence 5999999999986 3569999999999999999999999999999999999876 48999999987643211
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
...++.+++++| ..++++....++.++......+.+-++.+.+++. ...+...||||||||
T Consensus 421 -----~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQr 495 (591)
T KOG0057|consen 421 -----ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQR 495 (591)
T ss_pred -----HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHH
Confidence 123445666665 4566666666777776666667777777777762 123455799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+||||++.+|+|+++|||||+||.++..++++.+.+.. .++|+|+|-|+++.+.. ||+|++|++|++.+.|+.+++
T Consensus 496 vslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 496 VSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred HHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHH
Confidence 999999999999999999999999999999999999843 48999999999998875 999999999999999999998
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
+.
T Consensus 573 l~ 574 (591)
T KOG0057|consen 573 LA 574 (591)
T ss_pred hh
Confidence 76
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=326.10 Aligned_cols=211 Identities=16% Similarity=0.227 Sum_probs=160.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-ccccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~~ 91 (294)
.++++|+++ ..+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++|.+...... .....
T Consensus 257 ~l~~~~~~~-------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 257 RLRLDGLKG-------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT-AGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred EEEEecccc-------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC-CceEEECCEECCCCCHHHHHhC
Confidence 688899873 14899999999999999999999999999999999998876 8999888764321000 00011
Q ss_pred CcccccccccccccccCcccccccccHHHH-hhcCC----------CC--cHHHHHHHHHHcCCC---cccccccCCHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVE----------GS--DPVRRERLIELLDID---LQWRMHKVSDGQ 155 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~--~~~~~~~~l~~l~l~---~~~~~~~LSgGq 155 (294)
.+.++++.... ..++...+..+. .++.. .. ..+...++++.+++. .++++.+|||||
T Consensus 329 ~i~~~~q~~~~-------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 401 (501)
T PRK11288 329 GIMLCPEDRKA-------EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN 401 (501)
T ss_pred CCEEcCcCHhh-------CCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence 22232221100 012333343332 22110 00 112456788888883 578899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++.+++++|.++++ +|.|||+||||++++.++||++++|++|+++..|++
T Consensus 402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999999865 589999999999999999999999999999999887
Q ss_pred HHHH
Q 022663 236 AELD 239 (294)
Q Consensus 236 ~~~~ 239 (294)
+++.
T Consensus 481 ~~~~ 484 (501)
T PRK11288 481 EQAT 484 (501)
T ss_pred ccCC
Confidence 6543
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-41 Score=325.76 Aligned_cols=217 Identities=13% Similarity=0.180 Sum_probs=158.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~ 90 (294)
++|+++|++++| +.+|+++||+|++||+++|+||||||||||+|+|+|+.+|+ +|.+.++|.+...... ....
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~ 322 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS-AGTITLHGKKINNHNANEAIN 322 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC-ccEEEECCEECCCCCHHHHHH
Confidence 479999999974 25899999999999999999999999999999999998886 8999988864321100 0001
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCC--C---C--cHHHHHHHHHHcCCC---cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE--G---S--DPVRRERLIELLDID---LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~ 160 (294)
..+.+.++.... .+..............++.+... . . ......++++.+++. .++++.+|||||||||+
T Consensus 323 ~~i~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 323 HGFALVTEERRS-TGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred CCCEEcCCchhh-CCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 112333222100 00000000000111111111100 1 0 122346677888873 47889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||||+.+|+||||||||+|||+.++..++++|.++.+ +|.|||++|||++++..+|||+++|++|+++..++.+
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999998865 5899999999999999999999999999999766554
No 289
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.4e-40 Score=329.10 Aligned_cols=221 Identities=23% Similarity=0.247 Sum_probs=157.6
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc-cccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD-TQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~-~~~~~~ 90 (294)
++|+++||+++|++ +++|+||||+|++|++++|+||||||||||||+|+|++.|+ +|.+.+.+...... ......
T Consensus 2 ~~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~-~G~I~~~~~~~~~~l~q~~~~ 77 (635)
T PRK11147 2 SLISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGRIIYEQDLIVARLQQDPPR 77 (635)
T ss_pred cEEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEeCCCCEEEEeccCCCC
Confidence 47999999999975 57999999999999999999999999999999999998886 88888765321100 000000
Q ss_pred CCcccccccccccccccCc----c---c--ccccccHHHHh--------hc-CCCC-cHHHHHHHHHHcCCCcccccccC
Q 022663 91 GDLSYLGGSWSKTVGSAGE----I---P--LQGDFSAEHMI--------FG-VEGS-DPVRRERLIELLDIDLQWRMHKV 151 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~----~---~--~~~~~~~~~~~--------~~-~~~~-~~~~~~~~l~~l~l~~~~~~~~L 151 (294)
.......+........... . . .......+++. +. .... ...++..+++.+++..++++.+|
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~L 157 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSL 157 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhc
Confidence 0000000000000000000 0 0 00000000000 00 0111 13456778888998778889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR- 230 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~- 230 (294)
||||||||+|||||+.+|+||||||||+|||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999865 369999999999999999999999999997
Q ss_pred ecccHHHHHH
Q 022663 231 RAEKLAELDE 240 (294)
Q Consensus 231 ~~g~~~~~~~ 240 (294)
+.|+++++..
T Consensus 234 ~~g~~~~~~~ 243 (635)
T PRK11147 234 YPGNYDQYLL 243 (635)
T ss_pred ecCCHHHHHH
Confidence 4688776654
No 290
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=331.73 Aligned_cols=202 Identities=22% Similarity=0.289 Sum_probs=159.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++||++.|++ +++|+|+||+|.+|++++|+||||||||||||+|+|++.|+ +|.+.+.+..
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~---------- 375 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGEIGLAKGI---------- 375 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCCE----------
Confidence 347999999999975 57999999999999999999999999999999999998876 7888764310
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcC-CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV-EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+.|+++.... .+....+..+..... .......+..+++.+++. .++++.+|||||||||+||++|+
T Consensus 376 -~igy~~Q~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 376 -KLGYFAQHQLE--------FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEecCcchh--------hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 12333221100 011111222211111 111234567788888884 47789999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHHH
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAELD 239 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 239 (294)
.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999875 359999999999999999999999999997 788888764
No 291
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=331.32 Aligned_cols=209 Identities=22% Similarity=0.250 Sum_probs=156.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ +++|+||||+|.+|+++||+||||||||||||+|+|++.|+ +|.|.+.+....
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i---------- 66 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQL---------- 66 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEE----------
Confidence 5899999999975 57999999999999999999999999999999999988886 888887664210
Q ss_pred ccccccc----ccccccccCc-ccccccccH-----------HHH--hh----cCCCC-cHHHHHHHHHHcCCC---ccc
Q 022663 93 LSYLGGS----WSKTVGSAGE-IPLQGDFSA-----------EHM--IF----GVEGS-DPVRRERLIELLDID---LQW 146 (294)
Q Consensus 93 ~~~~~~~----~~~~~~~~~~-~~~~~~~~~-----------~~~--~~----~~~~~-~~~~~~~~l~~l~l~---~~~ 146 (294)
.+..+. ....++++.+ ...+..++. ..+ .. ..... ...++..+++.+++. .++
T Consensus 67 -~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 145 (638)
T PRK10636 67 -AWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER 145 (638)
T ss_pred -EEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC
Confidence 000000 0000111110 000000000 000 00 00111 124567788999984 478
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|.++ +.|||+||||++++..+||+|++|++
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 89999999999999999999999999999999999999999998888753 57999999999999999999999999
Q ss_pred CeEE-ecccHHHHHH
Q 022663 227 GELR-RAEKLAELDE 240 (294)
Q Consensus 227 G~i~-~~g~~~~~~~ 240 (294)
|++. +.|+++.+..
T Consensus 222 G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 222 QSLFEYTGNYSSFEV 236 (638)
T ss_pred CEEEEecCCHHHHHH
Confidence 9996 5787776643
No 292
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-40 Score=278.51 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=130.8
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ ++++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.+.+.. .+
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~-----------~i 66 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGE-----------DL 66 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCc-----------eE
Confidence 468999999964 246999999999999999999999999999999999998876 8888775521 12
Q ss_pred ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl 173 (294)
.+.++. ..++ ..+..+++.. . .+.+||||||||++|||||+.+|++||
T Consensus 67 ~~~~q~----------~~~~-~~tv~~nl~~----------------~-----~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 67 LFLPQR----------PYLP-LGTLREQLIY----------------P-----WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred EEECCC----------Cccc-cccHHHHhhc----------------c-----CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 222221 1111 1232222110 0 467999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 174 LDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
|||||++||+.++..+.+.|.++ +.|+|++|||++++ .+||++++|+++.
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999764 58999999999875 5999999998763
No 293
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=301.85 Aligned_cols=224 Identities=19% Similarity=0.224 Sum_probs=178.2
Q ss_pred cccEEEcceEEEcCCCC--------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663 11 LNSIKVCGMQFSYEGND--------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~--------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~ 82 (294)
.+.|+.++|...|.-.+ ...++++|||++.+|+.+||+|+||||||||-++|.+++.+ .|.|.+.|.+..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G~~i~ 351 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDID 351 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECCcccc
Confidence 35799999999995321 13478999999999999999999999999999999998765 589999888653
Q ss_pred ccccccccCCcccccccccccccccCc---ccccccccHHHHhh-cC-----CCCc---HHHHHHHHHHcCCC---cccc
Q 022663 83 HDTQLVCSGDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMIF-GV-----EGSD---PVRRERLIELLDID---LQWR 147 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~-----~~~~---~~~~~~~l~~l~l~---~~~~ 147 (294)
..... .. ...+..+..+++ -.+.+.++..+++- ++ .... .+++.++++..|++ .+++
T Consensus 352 ~~~~~----~m----rplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY 423 (534)
T COG4172 352 GLSRK----EM----RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY 423 (534)
T ss_pred ccChh----hh----hhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC
Confidence 21100 00 011222222332 23455666665542 11 1112 23456778888886 5899
Q ss_pred cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
|+++|||||||++||||++.+|++++||||||+||...+.+++++|+++.+++|.+-++||||+..+..+||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccHHHHHHhhhh
Q 022663 228 ELRRAEKLAELDELRNS 244 (294)
Q Consensus 228 ~i~~~g~~~~~~~~~~~ 244 (294)
+|++.|+.+++++++..
T Consensus 504 kiVE~G~~~~if~~P~~ 520 (534)
T COG4172 504 KIVEQGPTEAVFANPQH 520 (534)
T ss_pred EEeeeCCHHHHhcCCCc
Confidence 99999999999987654
No 294
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.7e-41 Score=326.63 Aligned_cols=212 Identities=20% Similarity=0.247 Sum_probs=160.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccc-cc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQL-VC 89 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~-~~ 89 (294)
.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++|.+....... ..
T Consensus 266 ~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~ 336 (510)
T PRK15439 266 APVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR-GGRIMLNGKEINALSTAQRL 336 (510)
T ss_pred CceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEECCCCCHHHHH
Confidence 34799999983 1589999999999999999999999999999999998876 89998887643211000 00
Q ss_pred cCCcccccccccccccccCcccccccccHHHHh-h------cC--CCC-cHHHHHHHHHHcCCC---cccccccCCHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-F------GV--EGS-DPVRRERLIELLDID---LQWRMHKVSDGQR 156 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~--~~~-~~~~~~~~l~~l~l~---~~~~~~~LSgGqk 156 (294)
...+.|+++.... ..++..++..+.. . .. ... ..+.+.++++.+++. .++++.+||||||
T Consensus 337 ~~~i~~v~q~~~~-------~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 409 (510)
T PRK15439 337 ARGLVYLPEDRQS-------SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQ 409 (510)
T ss_pred hCCcEECCCChhh-------CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHH
Confidence 1122333221100 0123333332221 1 00 001 122356788888884 4788999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|++|||||||+|||+.+++.+.++|.++++ .|.|||+||||++++.++||++++|++|+++..++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999875 5899999999999999999999999999999988876
Q ss_pred HHH
Q 022663 237 ELD 239 (294)
Q Consensus 237 ~~~ 239 (294)
++.
T Consensus 489 ~~~ 491 (510)
T PRK15439 489 AIN 491 (510)
T ss_pred cCC
Confidence 654
No 295
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-40 Score=325.52 Aligned_cols=201 Identities=25% Similarity=0.242 Sum_probs=154.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|++.|+ +|.+.+++..
T Consensus 3 ~~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~----------- 68 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-NGEARPAPGI----------- 68 (552)
T ss_pred EEEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCC-----------
Confidence 47999999999972 157999999999999999999999999999999999998886 7887765321
Q ss_pred CcccccccccccccccCcccccccccHHHH-hhcC-------------------CCC-----------------------
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGV-------------------EGS----------------------- 128 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------~~~----------------------- 128 (294)
.+.++++.. .++..++..++ .++. ...
T Consensus 69 ~i~~v~Q~~----------~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (552)
T TIGR03719 69 KVGYLPQEP----------QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWD 138 (552)
T ss_pred EEEEEeccC----------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcch
Confidence 122222211 11111111111 1000 000
Q ss_pred cHHHHHHHHHHcCCC-cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 022663 129 DPVRRERLIELLDID-LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207 (294)
Q Consensus 129 ~~~~~~~~l~~l~l~-~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv 207 (294)
...++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+|
T Consensus 139 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIii 214 (552)
T TIGR03719 139 LDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAV 214 (552)
T ss_pred hHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEE
Confidence 012334566677774 47789999999999999999999999999999999999999999999998764 4599999
Q ss_pred eCChhHHHhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663 208 THIFDGLETWATHLAYIQDGELR-RAEKLAELDE 240 (294)
Q Consensus 208 sHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 240 (294)
|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 215 sHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 215 THDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999999999999975 7788887654
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.1e-40 Score=326.82 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=162.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 334 ~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~------ 404 (585)
T TIGR01192 334 AVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-VGQILIDGIDINTVTR------ 404 (585)
T ss_pred eEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC-CCEEEECCEEhhhCCH------
Confidence 5999999999975 246899999999999999999999999999999999999886 8999988865321110
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcC-----------CC--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLD-----------ID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSgGqkqR 158 (294)
..++..++++++. .++.....+++.++......+....+++..+ ++ .......||||||||
T Consensus 405 -----~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 405 -----ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred -----HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 1122334444442 2333323344444433223333333333221 11 244567899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998763 3899999999999886 5999999999999999999988
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 557 ~~~ 559 (585)
T TIGR01192 557 IQK 559 (585)
T ss_pred HHC
Confidence 654
No 297
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=318.96 Aligned_cols=211 Identities=29% Similarity=0.362 Sum_probs=153.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
|.+|+++|++++|++ +++|+++||+|.+|+++||||+||||||||||+|+|...|+ .|.|...+..
T Consensus 1 m~~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~-~G~i~~~~~~---------- 66 (530)
T COG0488 1 MSMITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGL---------- 66 (530)
T ss_pred CceEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC-CCeEeecCCc----------
Confidence 358999999999975 68999999999999999999999999999999999998887 7777654421
Q ss_pred CCccccccccccccc-----cc--Ccccccc-------------c---ccHHHH--hh-cCCCCc-HHHHHHHHHHcCCC
Q 022663 91 GDLSYLGGSWSKTVG-----SA--GEIPLQG-------------D---FSAEHM--IF-GVEGSD-PVRRERLIELLDID 143 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~-----~~--~~~~~~~-------------~---~~~~~~--~~-~~~~~~-~~~~~~~l~~l~l~ 143 (294)
.+.+..|.....-. .+ ....+.. . ....++ .+ ....+. ..++..++..|++.
T Consensus 67 -~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 67 -RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred -eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 11122111100000 00 0000000 0 000000 00 001111 23456677777776
Q ss_pred c-ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663 144 L-QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 144 ~-~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~ 222 (294)
. ++++++||||||.||+||+||+.+|++||||||||+||..+..++.++|.++ .| |||+||||.+|+.++|++|+
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence 4 7899999999999999999999999999999999999999999999888753 35 99999999999999999999
Q ss_pred EeeCCeEE-ecccHHHHHH
Q 022663 223 YIQDGELR-RAEKLAELDE 240 (294)
Q Consensus 223 ~l~~G~i~-~~g~~~~~~~ 240 (294)
.+++|++. +.|.++.+.+
T Consensus 222 ~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 222 ELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred EecCCceeEecCCHHHHHH
Confidence 99999874 5677766544
No 298
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.7e-40 Score=323.84 Aligned_cols=213 Identities=23% Similarity=0.269 Sum_probs=161.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.++++|++++|++. ++++|+|+||+|++|++++|+||||||||||+++|+|++.|. +|.+.++|.+......
T Consensus 316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~i~~~~~------ 387 (544)
T TIGR01842 316 HLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT-SGSVRLDGADLKQWDR------ 387 (544)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEehhhCCH------
Confidence 59999999999642 257999999999999999999999999999999999998886 8999988865321110
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHH---------HHc--CCC--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLI---------ELL--DID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~l--~l~--~~~~~~~LSgGqkqR 158 (294)
..++..++++++. .++.....+++.+.....+.+...+++ +.+ +++ .......||||||||
T Consensus 388 -----~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qr 462 (544)
T TIGR01842 388 -----ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462 (544)
T ss_pred -----HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHH
Confidence 1123334444442 233332233333232222333333333 333 222 244567899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++|||||||++||+.+++.+.+.|.++.. .++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 463 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999988743 4789999999999764 7999999999999999998876
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
.+
T Consensus 541 ~~ 542 (544)
T TIGR01842 541 LA 542 (544)
T ss_pred hh
Confidence 43
No 299
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.9e-40 Score=294.28 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=146.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.+.|+++|+++. + +++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.
T Consensus 37 ~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G~I~i~g~----------- 99 (282)
T cd03291 37 DNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-EGKIKHSGR----------- 99 (282)
T ss_pred CCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCE-----------
Confidence 457999999985 2 36999999999999999999999999999999999998876 888877652
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-------------CcccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-------------DLQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------------~~~~~~~~LSgGqkq 157 (294)
+.+.++. ..++.....+++.+.... .......+++.+++ ..++.+.+|||||+|
T Consensus 100 --i~yv~q~----------~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~q 166 (282)
T cd03291 100 --ISFSSQF----------SWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRA 166 (282)
T ss_pred --EEEEeCc----------ccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHH
Confidence 2222211 011111112222221111 11111222222222 123346799999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF-KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l-~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|++|||||+.+|++|||||||+|||+.++..+++.+ ..+ . .+.|||++|||++++. .||++++|++|+++..|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~-~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-h-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998865 444 3 3789999999999985 79999999999999999988
Q ss_pred HHHH
Q 022663 237 ELDE 240 (294)
Q Consensus 237 ~~~~ 240 (294)
++.+
T Consensus 244 ~~~~ 247 (282)
T cd03291 244 ELQS 247 (282)
T ss_pred HHHh
Confidence 8764
No 300
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.9e-41 Score=324.52 Aligned_cols=210 Identities=19% Similarity=0.267 Sum_probs=160.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~ 90 (294)
++|+++|+++ .+|+++||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... ....
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~-~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT-SGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred cEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHHHH
Confidence 4789999884 2699999999999999999999999999999999998886 8999988864321100 0001
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hcC----C---C-Cc----HHHHHHHHHHcCCC---cccccccCCHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGV----E---G-SD----PVRRERLIELLDID---LQWRMHKVSDG 154 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~---~-~~----~~~~~~~l~~l~l~---~~~~~~~LSgG 154 (294)
..+.|+++.... ..++..++..+++ +.. . . .. .+...++++.+++. .++++.+||||
T Consensus 327 ~~i~~v~q~~~~-------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 399 (501)
T PRK10762 327 NGIVYISEDRKR-------DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGG 399 (501)
T ss_pred CCCEEecCcccc-------CCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHH
Confidence 122332221100 0123334443322 210 0 0 11 22456788888883 57889999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|||||+|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||+|++|++|+++..++
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999865 48999999999999999999999999999998887
Q ss_pred HHHH
Q 022663 235 LAEL 238 (294)
Q Consensus 235 ~~~~ 238 (294)
++++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7654
No 301
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.7e-40 Score=326.88 Aligned_cols=213 Identities=24% Similarity=0.305 Sum_probs=167.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|++.|. +|.+.++|.+...-.
T Consensus 330 ~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~-~G~I~i~g~~i~~~~------- 400 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYT------- 400 (571)
T ss_pred eEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEeHHhcC-------
Confidence 59999999999643 357999999999999999999999999999999999999887 899999887542111
Q ss_pred cccccccccccccccCccc-ccccccHHHHhhcCC-CCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVE-GSDPVRRERLIELLDID---------LQW----RMHKVSDGQRR 157 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqkq 157 (294)
...++..++++++.+ ++.....+++.++.. ..+.++..++++.+++. ++. ....|||||||
T Consensus 401 ----~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 401 ----LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred ----HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 012233455555533 333333444444432 34555666666665542 222 23469999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++||||++.+|++|||||||++||+.+.+.+++.|.++. .++|+|+|||+...+. .||+|++|++|++++.|+.++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999999999999999999999999998764 3789999999998764 699999999999999999998
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 554 l~~~ 557 (571)
T TIGR02203 554 LLAR 557 (571)
T ss_pred HHHc
Confidence 8654
No 302
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=308.95 Aligned_cols=208 Identities=23% Similarity=0.344 Sum_probs=172.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+.+++++++|+|++ ..++++|||+|.+|||.||+|+||||||||+++|.|++.|+ +|.|.++|+.......
T Consensus 3 ~~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~-~GeI~v~G~~v~~~sP----- 73 (501)
T COG3845 3 PALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVRIKSP----- 73 (501)
T ss_pred ceEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC-cceEEECCEEeccCCH-----
Confidence 47999999999986 67999999999999999999999999999999999999998 9999999986422110
Q ss_pred CcccccccccccccccCc-ccccccccHH-HHhhcCCC-----Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVEG-----SD----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-----~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
....+..++++.| +.+.+.+|+. |+..+... .+ ..++.++.+.+++. ++.++++||-|||||
T Consensus 74 -----~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQR 148 (501)
T COG3845 74 -----RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQR 148 (501)
T ss_pred -----HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHH
Confidence 0112334555555 5677778764 44455432 12 23456777888875 789999999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|.|.+||..+|++|||||||+-|-|...+++++.++.+.+ .|+|||+|||-++++.++|||+.+|.+|+++...+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999998865 59999999999999999999999999999876544
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.6e-40 Score=332.28 Aligned_cols=214 Identities=22% Similarity=0.325 Sum_probs=167.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++. .+++|+|+||+|++||.++|+|+||||||||+|+|+|++.|+ +|.+.++|.+...-.
T Consensus 455 ~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~------- 525 (694)
T TIGR01846 455 AITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIAD------- 525 (694)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCC-------
Confidence 59999999999642 256999999999999999999999999999999999999887 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkqR 158 (294)
...++..++++++. .++.....+++.++....+.+...++++..++ + .......||||||||
T Consensus 526 ----~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 526 ----PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred ----HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 11233445555543 33433334444444333344444455554432 1 233456899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998863 47999999999998865 999999999999999999998
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+..
T Consensus 679 ~~~~ 682 (694)
T TIGR01846 679 LALQ 682 (694)
T ss_pred HHcC
Confidence 7643
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.9e-40 Score=325.64 Aligned_cols=214 Identities=21% Similarity=0.261 Sum_probs=166.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++..++++|+|+||+|++||+++|+||||||||||+|+|+|++.|. .|.+.++|.+.....
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G~I~i~g~~i~~~~------- 408 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SGRILLDGVDLRQLD------- 408 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcC-------
Confidence 599999999997422257999999999999999999999999999999999999886 899999886542111
Q ss_pred cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR 158 (294)
...+++.++++++.+ ++.....+|+.++....+.++..++++..++. . ......||||||||
T Consensus 409 ----~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 409 ----PAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred ----HHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 112333455555533 33333344544443333444555555554431 1 23345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++||||++.+|++|||||||++||+.+++.+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHH
Confidence 999999999999999999999999999999999998874 3799999999998765 6999999999999999999887
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 562 ~~~ 564 (576)
T TIGR02204 562 IAK 564 (576)
T ss_pred HHc
Confidence 653
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-40 Score=292.06 Aligned_cols=192 Identities=21% Similarity=0.244 Sum_probs=144.2
Q ss_pred EcCCCCCCCceeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccc
Q 022663 22 SYEGNDKPPLFYDFNLGIS-----PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL 96 (294)
Q Consensus 22 ~y~~~~~~~iL~~vsl~i~-----~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 96 (294)
+|++. ...+++++|++. +||+++|+||||||||||+++|+|++.|+ +|.+.+++.. +.+.
T Consensus 2 ~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G~i~~~g~~------------i~~~ 66 (246)
T cd03237 2 TYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEIELDT------------VSYK 66 (246)
T ss_pred CCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCce------------EEEe
Confidence 46432 346778888876 79999999999999999999999998886 8888776631 2222
Q ss_pred cccccccccccCcccccccccHHHHhh-cCC--CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCE
Q 022663 97 GGSWSKTVGSAGEIPLQGDFSAEHMIF-GVE--GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKV 171 (294)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~i 171 (294)
++.. ......+..+++. ... ........++++.+++. .++++.+|||||||||+|||||+.+|++
T Consensus 67 ~q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 67 PQYI----------KADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred cccc----------cCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2211 0111223333321 111 11122346678888885 5788999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE--ecccHHHH
Q 022663 172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR--RAEKLAEL 238 (294)
Q Consensus 172 LlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~--~~g~~~~~ 238 (294)
|||||||++||+.++..+.++|.+++++.++|||+||||++++..+||+|++|+++... ..+++..+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999999999999999999999987766899999999999999999999999765433 33444444
No 306
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-40 Score=324.54 Aligned_cols=213 Identities=22% Similarity=0.329 Sum_probs=165.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|++++|+.. ++++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 313 ~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~i~~~g~~~~~~~------- 383 (569)
T PRK10789 313 ELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQ------- 383 (569)
T ss_pred cEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEHhhCC-------
Confidence 59999999999742 256999999999999999999999999999999999999886 899998887542111
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
...++..++++++ ..++.....+++.++......+....+++..++. .+.....||||||||
T Consensus 384 ----~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qR 459 (569)
T PRK10789 384 ----LDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR 459 (569)
T ss_pred ----HHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 0122333444444 2334333334444443333444444555444321 234456799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999998864 4899999999998876 5999999999999999999988
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 537 ~~~ 539 (569)
T PRK10789 537 AQQ 539 (569)
T ss_pred HHc
Confidence 754
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.6e-40 Score=269.18 Aligned_cols=144 Identities=33% Similarity=0.462 Sum_probs=126.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|. +|.+.+++.. .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~-----------~i 65 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTV-----------KI 65 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeE-----------EE
Confidence 468999999975 46999999999999999999999999999999999998876 7877765420 00
Q ss_pred ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl 173 (294)
.+ + .+||+||+||++|||||+.+|+++|
T Consensus 66 ~~-----------~-----------------------------------------~~lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 66 GY-----------F-----------------------------------------EQLSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred EE-----------E-----------------------------------------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 0 0199999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 174 LDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
|||||++||+.++..+.+.|+++ +.|+|++||+++++..+||++++|++|+
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999764 4699999999999999999999999985
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.9e-40 Score=287.23 Aligned_cols=188 Identities=23% Similarity=0.296 Sum_probs=144.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF 116 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (294)
|+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+... ....+.+.++... .......
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~-----~~~~i~~v~q~~~--------~~~~~~~ 66 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA-KGTVKVAGASPGK-----GWRHIGYVPQRHE--------FAWDFPI 66 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCccchH-----hhCcEEEeccccc--------ccCCCCc
Confidence 578999999999999999999999999998876 8999998865311 0112333322110 0000112
Q ss_pred cHHH-HhhcC------C--C--CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 022663 117 SAEH-MIFGV------E--G--SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183 (294)
Q Consensus 117 ~~~~-~~~~~------~--~--~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~ 183 (294)
+..+ +.+.. . . .....+..+++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 3222 22211 0 0 1123456778888885 4778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
.++..+.++|.++++ .|.|||++|||++++.++||+++++ +|+++..++.+++.+
T Consensus 147 ~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 147 PTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 999999999998864 4899999999999999999999999 899999999888754
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-39 Score=319.55 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=158.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.+.+. .
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~-~---------- 387 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGET-V---------- 387 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCc-e----------
Confidence 48999999999975 57999999999999999999999999999999999998886 788876321 0
Q ss_pred CcccccccccccccccCcccccccccHHHHh-hcCC--C--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVE--G--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr 163 (294)
.+.|+++.. ..++..++..+.+ +... . ........+++.+++. .++++.+|||||||||+|||
T Consensus 388 ~i~~v~q~~---------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 388 KLAYVDQSR---------DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEEeCch---------hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 123332211 0122333433322 2211 1 1122345678888884 47889999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC-CeEE-ecccHHHHHHh
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD-GELR-RAEKLAELDEL 241 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~~~~ 241 (294)
||+.+|++|||||||+|||+.++..++++|.++ +.|||+||||++++..+||+|++|++ |++. ..|+++++.+.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999875 24899999999999999999999996 7776 57888777654
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.1e-40 Score=352.97 Aligned_cols=214 Identities=22% Similarity=0.290 Sum_probs=173.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+.|+++||++.|+++ ++.+|+|+||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt-sG~I~i~G~dI~~~~------ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT-SGTVLVGGKDIETNL------ 998 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC-ceEEEECCEECcchH------
Confidence 479999999999521 257999999999999999999999999999999999999887 899999887542110
Q ss_pred CcccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
...++.++++++ ..+++.++..+.+ +. ..+.. .++++++++.+++. .++++.+|||||||||+|
T Consensus 999 ------~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 999 ------DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred ------HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 011223444443 3345566665543 21 12211 23456788888885 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+||+.+|++|||||||+|||+.+++.++++|+++. .|+|||++|||++++..+||||++|++|+++..|++..+.+.
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999983 489999999999999999999999999999999999887654
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.2e-40 Score=320.38 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=156.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.+.+. .
T Consensus 320 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~-~--------- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGET-V--------- 385 (552)
T ss_pred CeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCc-e---------
Confidence 358999999999975 57999999999999999999999999999999999998876 788876321 0
Q ss_pred CCcccccccccccccccCcccccccccHHHH-hhcCC--C--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVE--G--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lA 162 (294)
.+.++++.. ..+++.++..+. .+... . ........+++.+++. .++++.+|||||||||+||
T Consensus 386 -~i~~v~q~~---------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 386 -KLAYVDQSR---------DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred -EEEEEeCCc---------cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 123332210 012233343332 22211 1 1122345678888884 3788999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC-CeEE-ecccHHHHHH
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD-GELR-RAEKLAELDE 240 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~~~ 240 (294)
|||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||+|++|++ |++. +.|+.+++.+
T Consensus 456 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 456 KTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999999875 24899999999999999999999997 5765 5677766543
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.7e-39 Score=281.93 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=141.6
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-ecCCcccccccccccCCcccccccccccccccC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
++|+||||+|++|++++|+||||||||||+|+|+|+++|+ +|.+. +.+.... .+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~-------------~~~---------- 56 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALP-------------LGA---------- 56 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceec-------------ccc----------
Confidence 3799999999999999999999999999999999998876 77775 4432110 000
Q ss_pred cccccccccHHHHh-hc--CCCCcHHH-HHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCC
Q 022663 109 EIPLQGDFSAEHMI-FG--VEGSDPVR-RERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182 (294)
Q Consensus 109 ~~~~~~~~~~~~~~-~~--~~~~~~~~-~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD 182 (294)
...+++.++..+++ +. ........ ...+.+.+++. .++++.+||+|||||++|||||+.+|+++||||||++||
T Consensus 57 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD 136 (213)
T PRK15177 57 NSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD 136 (213)
T ss_pred ccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 11123344443332 21 11222222 23333445554 477889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 183 VVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 183 ~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
+.++..+.+.|.+..+ +.|+|++||+++++..+||++++|++|++++.++.++...
T Consensus 137 ~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 137 NATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999999998866543 4689999999999999999999999999999998887643
No 313
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-39 Score=323.81 Aligned_cols=200 Identities=21% Similarity=0.321 Sum_probs=156.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +++|+|+||+|.+|++++|+||||||||||||+|+|++.|+ +|.+.+ |...
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~-~~~~---------- 382 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHC-GTKL---------- 382 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEE-CCCc----------
Confidence 47999999999975 57999999999999999999999999999999999998876 788876 3221
Q ss_pred CcccccccccccccccCcccccccccHHHHh-hcCCC----CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEG----SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr 163 (294)
.+.|+.+.. ..+.+..+..+.+ +.... .....+..+++.+++. .++++.+|||||||||+|||
T Consensus 383 ~i~y~~q~~---------~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 383 EVAYFDQHR---------AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAR 453 (635)
T ss_pred EEEEEeCcc---------cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 122332210 0122333433322 21111 1123456678888874 47789999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-CCeEEe-cccHHHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-DGELRR-AEKLAELD 239 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i~~-~g~~~~~~ 239 (294)
||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|+ +|++.. .|+++++.
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 999999999999999999999999999888754 5699999999999999999999998 899864 67777764
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.7e-40 Score=320.88 Aligned_cols=195 Identities=22% Similarity=0.216 Sum_probs=156.1
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++|++++|++ ..|+++||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.+. .
T Consensus 338 ~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~-~----------- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPE-L----------- 400 (590)
T ss_pred ceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEe-e-----------
Confidence 357999999999964 3599999999999999999999999999999999998886 7777653 0
Q ss_pred CCcccccccccccccccCcccccccccHHHHh-hcCCCC-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGS-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+.+.++.. ......+..+++ +..... ......++++.+++. .++++.+|||||||||+|||||+
T Consensus 401 -~i~y~~Q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 401 -KISYKPQYI----------KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLS 469 (590)
T ss_pred -eEEEecccc----------cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHh
Confidence 123332221 112233443332 211111 123456788888885 58899999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
.+|++|||||||+|||+.++..+.++|++++++.|.|||+||||++++..+|||+++|++ ++...|.
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999999999876789999999999999999999999964 7766665
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-39 Score=324.39 Aligned_cols=202 Identities=22% Similarity=0.284 Sum_probs=155.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ .+++|+|+||+|.+|++++|+||||||||||||+|+|++.|+ +|.+.+.+..
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G~I~~~~~~----------- 572 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS-SGTVFRSAKV----------- 572 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CceEEECCce-----------
Confidence 58999999999964 246999999999999999999999999999999999998886 7888764321
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP 168 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~ 168 (294)
.+.|+++.... ....... ....+...........+..+++.+++. .++++.+|||||||||+|||||+.+
T Consensus 573 ~igyv~Q~~~~------~l~~~~~-~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 573 RMAVFSQHHVD------GLDLSSN-PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eEEEEeccccc------cCCcchh-HHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 12333322100 0000000 000000011122345567788999985 4678999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHH
Q 022663 169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAEL 238 (294)
Q Consensus 169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 238 (294)
|++|||||||+|||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999998887653 349999999999999999999999999998 67877665
No 316
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-40 Score=298.18 Aligned_cols=226 Identities=22% Similarity=0.318 Sum_probs=172.6
Q ss_pred cccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCcccccc
Q 022663 11 LNSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDT 85 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~ 85 (294)
++.|+++||++.|... +...++++|||+|.+||.++|||+||||||-..+.|+|+++.. .+|.+.+.|.+.....
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 5689999999999621 2356999999999999999999999999999999999987542 3678888888754321
Q ss_pred cccccCCcccccccccccccccCccc---ccccccH-HHH----hh--cCCC-CcHHHHHHHHHHcCCC-----cccccc
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHM----IF--GVEG-SDPVRRERLIELLDID-----LQWRMH 149 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~----~~--~~~~-~~~~~~~~~l~~l~l~-----~~~~~~ 149 (294)
..... ...-..++++++.+ +-+-.+. .++ .+ +... ..+.+..++++..++. ++.+|+
T Consensus 84 e~~lr-------~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH 156 (534)
T COG4172 84 ERQLR-------GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH 156 (534)
T ss_pred HHHHh-------hhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence 11000 00011233333221 1111111 111 11 1111 1123445667777774 578999
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
+|||||||||+||.||+++|++||.||||++||...+.+|+++|+++.++.|.++++||||+..+.++||||++|.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccHHHHHHhhh
Q 022663 230 RRAEKLAELDELRN 243 (294)
Q Consensus 230 ~~~g~~~~~~~~~~ 243 (294)
++.|..+.++..+.
T Consensus 237 vE~~~t~~lF~~Pq 250 (534)
T COG4172 237 VETGTTETLFAAPQ 250 (534)
T ss_pred eecCcHHHHhhCCC
Confidence 99999999988754
No 317
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9e-40 Score=347.27 Aligned_cols=216 Identities=20% Similarity=0.251 Sum_probs=169.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-----------------------
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----------------------- 69 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----------------------- 69 (294)
.|+++||+|+|++..+.++|+|+||+|++|+++||+||||||||||+++|.|++.|.
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 599999999997432357999999999999999999999999999999999999873
Q ss_pred ------------------------------CCceEEecCCcccccccccccCCcccccccccccccccCcc-cccccccH
Q 022663 70 ------------------------------GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSA 118 (294)
Q Consensus 70 ------------------------------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 118 (294)
.+|.|.++|.+.... ....++..+++++|. .++.....
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~-----------~~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY-----------NLKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC-----------CHHHHHhhccEeCCCCccccccHH
Confidence 367777777654221 112345566777664 44544445
Q ss_pred HHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHH
Q 022663 119 EHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA 185 (294)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~ 185 (294)
+++.++......+.+.++++..++. .+ .+...||||||||++|||||+.+|+|||||||||+||+++
T Consensus 1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 6666665444555566666655431 23 3445799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC----CeEE-ecccHHHHHH
Q 022663 186 RMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD----GELR-RAEKLAELDE 240 (294)
Q Consensus 186 ~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~ 240 (294)
.+.|.+.|.++....++|+|+|||++..+. .||+|++|++ |+++ +.|+.+++.+
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999998864224899999999998876 5999999999 8955 8999999875
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-39 Score=279.00 Aligned_cols=187 Identities=21% Similarity=0.290 Sum_probs=141.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++|++++|++ +.+++ +||+|++||+++|+|+||||||||+++|+|+..|+ +|.+.++|.+..... ...
T Consensus 1 ~l~~~~l~~~~~~---~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~----~~~ 71 (195)
T PRK13541 1 MLSLHQLQFNIEQ---KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-SGNIYYKNCNINNIA----KPY 71 (195)
T ss_pred CeEEEEeeEEECC---cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCcccChhh----hhh
Confidence 4889999999964 45555 99999999999999999999999999999998876 899998886532100 001
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCCC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
+.+ +++ ..+....+..+ +.+.... ...+....+++.+++. .++++.+|||||+||++||||++.
T Consensus 72 ~~~-----------~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 72 CTY-----------IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EEe-----------ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc
Confidence 112 221 12223334333 3221111 1233456777888875 577889999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL 221 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v 221 (294)
+|++|||||||++||+.++..+.++|.+.. +.+.|||++|||++++.. +|.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence 999999999999999999999999997654 458999999999998876 6654
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-39 Score=274.54 Aligned_cols=154 Identities=23% Similarity=0.242 Sum_probs=129.0
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL 96 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 96 (294)
.||+++|++ +.+++++ |+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+++.. +.+.
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~------------i~~~ 66 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGIT------------PVYK 66 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEE------------EEEE
Confidence 689999975 5688884 999999999999999999999999999998886 7888765531 1110
Q ss_pred cccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeC
Q 022663 97 GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE 176 (294)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE 176 (294)
++. + .||||||||++|||||+.+|+++||||
T Consensus 67 -----------~q~-------------------------------------~-~LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 67 -----------PQY-------------------------------------I-DLSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred -----------ccc-------------------------------------C-CCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 000 0 099999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec--ccHH
Q 022663 177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA--EKLA 236 (294)
Q Consensus 177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~--g~~~ 236 (294)
||++||+.++..+.++|.+++++.+.|||++|||++++..+||++++|+++-.+.. +.+.
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999988654348999999999999999999999998765433 4444
No 320
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2e-39 Score=317.87 Aligned_cols=201 Identities=23% Similarity=0.307 Sum_probs=153.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++ +.++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 322 ~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~------ 392 (547)
T PRK10522 322 TLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVTAEQP------ 392 (547)
T ss_pred eEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCCCCH------
Confidence 6999999999974 246999999999999999999999999999999999999886 8999998875422110
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCc--c---c--ccccCCHHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDL--Q---W--RMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~---~--~~~~LSgGqkqRv~lAra 164 (294)
..++..++++++. .+++....++ + ...+.+...++++.+++.. . . ....||||||||++||||
T Consensus 393 -----~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 393 -----EDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred -----HHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 1122233333332 2222211111 0 1123344566777777642 1 1 135899999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
++++|++|||||||++||+.+.+.+.+.+.+..++.++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 999999999999999999999999999987765445899999999998654 7999999999999876
No 321
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.1e-40 Score=278.60 Aligned_cols=173 Identities=28% Similarity=0.330 Sum_probs=129.4
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...... .. ..++..+++++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~-----~~----~~~~~~i~~~~ 74 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRK-----GL----LERRQRVGLVF 74 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEECCEEcccccc-----ch----HHHHhhEEEEe
Confidence 56999999999999999999999999999999999998876 8899888865321000 00 00111223333
Q ss_pred ccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeC
Q 022663 109 EIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE 176 (294)
Q Consensus 109 ~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE 176 (294)
+.+ ++. .+. +++.+.. .... .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||
T Consensus 75 q~~~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 75 QDPDDQLFA-ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cChhhcccc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 221 222 233 3332211 1111 12456778888885 578899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663 177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG 213 (294)
Q Consensus 177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~ 213 (294)
||+|||+.++..+.++|.++.+ .|.|||++|||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecccc
Confidence 9999999999999999998865 48999999999875
No 322
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-39 Score=323.75 Aligned_cols=207 Identities=23% Similarity=0.243 Sum_probs=161.2
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
.++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|...+. .+|.+.++|.+....
T Consensus 70 ~~~~l~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~--------- 137 (659)
T PLN03211 70 KISDETRQIQE---RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ--------- 137 (659)
T ss_pred ccccccccCCC---CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh---------
Confidence 35567777754 57999999999999999999999999999999999987764 378999888653210
Q ss_pred ccccccccccccccCc-ccccccccHHHHh-hc--C--C-CCc----HHHHHHHHHHcCCC--c-----ccccccCCHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--V--E-GSD----PVRRERLIELLDID--L-----QWRMHKVSDGQ 155 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~--~-~~~----~~~~~~~l~~l~l~--~-----~~~~~~LSgGq 155 (294)
..+.++++.+ ..+++.++..+.+ +. . . ... .++++++++.+++. . ++.+..|||||
T Consensus 138 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGe 211 (659)
T PLN03211 138 ------ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211 (659)
T ss_pred ------hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhh
Confidence 0112333333 2334445554432 21 1 1 111 12356778888884 2 34567899999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeEEeccc
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|+++..|+
T Consensus 212 rqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 212 RKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECC
Confidence 9999999999999999999999999999999999999999875 5899999999998 5889999999999999999999
Q ss_pred HHHHHH
Q 022663 235 LAELDE 240 (294)
Q Consensus 235 ~~~~~~ 240 (294)
.+++.+
T Consensus 291 ~~~~~~ 296 (659)
T PLN03211 291 GSDAMA 296 (659)
T ss_pred HHHHHH
Confidence 988754
No 323
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.6e-39 Score=287.74 Aligned_cols=201 Identities=20% Similarity=0.218 Sum_probs=145.3
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-----------ecCCcccccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-----------VLNRSSFHDT 85 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-----------~~~~~~~~~~ 85 (294)
.+|+++|+. ...+|+|+|+ +.+||+++|+||||||||||+|+|+|++.|+ .|.+. ++|.+.....
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~ 79 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYF 79 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhh
Confidence 479999964 2358999995 9999999999999999999999999999887 88875 3333211000
Q ss_pred cccccCCcccccccccccccccCc-ccccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
....... ..+++..+ ..+.+.....++...... .......++++.+++. .++.+.+||||||||++|
T Consensus 80 ~~~~~~~---------~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 80 TKLLEGD---------VKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred HHhhhcc---------cceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 0000000 00111111 122221111222211111 1224456788888885 477889999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
||||+.+|+++||||||++||+.++..+.+.|.++.+ .+.|||++|||++++..+||+|++|+ |++.+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 9999999999999999999999999999999998865 48999999999999999999999995 555543
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.2e-39 Score=315.23 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=152.7
Q ss_pred cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|+++||+|+|++.+ .+++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~-~G~i~~~g~~i~~~~~---- 411 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSADSR---- 411 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCH----
Confidence 599999999997521 135999999999999999999999999999999999999887 8999998875432110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCc--c------cccccCCHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDL--Q------WRMHKVSDGQRRRVQI 161 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~------~~~~~LSgGqkqRv~l 161 (294)
..++..++++.+ ..++.....++. ......++..++++.+++.. + .....||||||||++|
T Consensus 412 -------~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 412 -------DDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred -------HHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 112233444333 222322222221 11123344566777777641 1 1236799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
|||++.+|++|||||||++||+.+++.+.+.+.+..+..++|+|+|||+++.+ ..||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998866433334589999999999866 47999999999999764
No 325
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-39 Score=268.76 Aligned_cols=216 Identities=19% Similarity=0.283 Sum_probs=171.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC-Cccccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN-RSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~-~~~~~~~~~~~~ 90 (294)
+.|++++|+++|++ ..+|+++||+|.+||.-+|||||||||||++.+|+|...|+ .|.+.+.| .+.......
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~-~G~v~f~g~~dl~~~~e~--- 76 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ-EGEVLFDGDTDLTKLPEH--- 76 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC-cceEEEcCchhhccCCHH---
Confidence 47999999999987 67999999999999999999999999999999999998886 88988887 332211100
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hc--------------CCCCcHHHHHHHHHHcCCC--cccccccCC
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--------------VEGSDPVRRERLIELLDID--LQWRMHKVS 152 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~l~~l~l~--~~~~~~~LS 152 (294)
.+. +..++.-++ +..+..+++.+++ .. .......+++++++..++. .+.....||
T Consensus 77 -~IA------r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LS 149 (249)
T COG4674 77 -RIA------RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLS 149 (249)
T ss_pred -HHH------HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhc
Confidence 000 112222223 3345555554432 11 1112234667888888875 466788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
.||||++.|+..++++|++|+||||++|+-.....+..++|+.++. ..+|++|.||++++..+|++|-+|+.|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999864 57999999999999999999999999999999
Q ss_pred ccHHHHHHhhh
Q 022663 233 EKLAELDELRN 243 (294)
Q Consensus 233 g~~~~~~~~~~ 243 (294)
|+.+++.+++.
T Consensus 228 Gsld~v~~dp~ 238 (249)
T COG4674 228 GSLDEVQNDPK 238 (249)
T ss_pred ccHHHhhcCcc
Confidence 99999876543
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.5e-39 Score=341.49 Aligned_cols=213 Identities=19% Similarity=0.239 Sum_probs=168.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|++.|+ +|.|.++|.+...-.
T Consensus 1234 ~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~-~G~I~IdG~di~~i~------- 1304 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE-KGRIMIDDCDVAKFG------- 1304 (1495)
T ss_pred cEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CceEEECCEEhhhCC-------
Confidence 59999999999542 257999999999999999999999999999999999999887 899999997653211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR 158 (294)
...++..+++++|. .++.. |..+++......+.+...++++..++. + ......||||||||
T Consensus 1305 ----~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1379 (1495)
T PLN03232 1305 ----LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL 1379 (1495)
T ss_pred ----HHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH
Confidence 11234455555553 34444 444433222233444555566655431 2 23445799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|+|||||||||+||+++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998763 37999999999999886 999999999999999999999
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+..
T Consensus 1457 l~~~ 1460 (1495)
T PLN03232 1457 LSRD 1460 (1495)
T ss_pred HhCC
Confidence 8653
No 327
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-39 Score=323.56 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=176.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|+.+.+.+||+|+||+|++|+.+||||||||||||.+.+|-..+.|+ .|.+.++|.+...-.
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~-~G~V~IDg~dik~ln------- 1058 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD-AGKVKIDGVDIKDLN------- 1058 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCcccccCC-------
Confidence 599999999999766678999999999999999999999999999999999999987 999999988753211
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-------C--cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-------D--LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~--~~----~~~~~LSgGqkqR 158 (294)
...++.+++.+.| +.++...-.+|+.++....+.+.+.++++..+. + .| .+..+||||||||
T Consensus 1059 ----l~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQR 1134 (1228)
T KOG0055|consen 1059 ----LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQR 1134 (1228)
T ss_pred ----HHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHH
Confidence 1123556666666 445555556777788433455555555555432 1 23 4556899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+|||||+++||+||||||.||+||.++.+.+.+.|.+.. .|.|.|+|.|.+..+.+ ||.|+|+++|+|++.|+.+++
T Consensus 1135 IAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1135 IAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred HHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHH
Confidence 999999999999999999999999999999999998864 48999999999998875 999999999999999999999
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 1212 ~~~ 1214 (1228)
T KOG0055|consen 1212 LAK 1214 (1228)
T ss_pred HhC
Confidence 874
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-38 Score=340.29 Aligned_cols=212 Identities=19% Similarity=0.244 Sum_probs=168.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|++.|+ +|.|.++|.+...-.
T Consensus 1237 ~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~------- 1307 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFG------- 1307 (1622)
T ss_pred cEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCC-------
Confidence 59999999999642 247999999999999999999999999999999999999887 899999998653211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
...++..+++++|. .++.. |..+++........+...++++..++. ++ .....||||||||
T Consensus 1308 ----l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQr 1382 (1622)
T PLN03130 1308 ----LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQL 1382 (1622)
T ss_pred ----HHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHH
Confidence 11234455555553 34444 444433222223444555566554431 22 3345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|+|||||||||+||..+...|.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|+|++.|+++++
T Consensus 1383 laLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1383 LSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 37999999999999886 899999999999999999999
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 1460 l~~ 1462 (1622)
T PLN03130 1460 LSN 1462 (1622)
T ss_pred HhC
Confidence 864
No 329
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-38 Score=258.69 Aligned_cols=222 Identities=25% Similarity=0.330 Sum_probs=168.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|.+++.++|+.|++ ..-.+||||++.|||+.+|+|+|||||||||+||+|-+.|+ .|++.+...+....
T Consensus 4 ~PLL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~------ 73 (258)
T COG4107 4 KPLLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPR------ 73 (258)
T ss_pred CcceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCch------
Confidence 568999999999986 45789999999999999999999999999999999988887 77776643321000
Q ss_pred CCccccccc-----ccccccccCcccccc---ccc-----HHH-HhhcCC--CCcHHHHHHHHHHcCCC---cccccccC
Q 022663 91 GDLSYLGGS-----WSKTVGSAGEIPLQG---DFS-----AEH-MIFGVE--GSDPVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 91 ~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~-----~~~-~~~~~~--~~~~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
++....+. .+...+++.+.+.-+ ..+ .+. +..+.. +.-.....++++...++ .+..|..+
T Consensus 74 -dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 74 -DLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred -hHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc
Confidence 00000000 011112222222110 001 011 111111 11123456788888886 46789999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||||||+.|||-|+..|+++++||||.|||...+..++++++.+..+.+.++++||||+..+.-+++|..+|++|++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhhh
Q 022663 232 AEKLAELDELRN 243 (294)
Q Consensus 232 ~g~~~~~~~~~~ 243 (294)
.|-.+.++..+.
T Consensus 233 ~GLTDrvLDDP~ 244 (258)
T COG4107 233 SGLTDRVLDDPH 244 (258)
T ss_pred cccccccccCCC
Confidence 998888776543
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-38 Score=338.05 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=151.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec-CCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL-NRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~-~~~~~~~~~~~~~~ 91 (294)
.|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++ +.+......
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~i~~g~~i~~~~~----- 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT-EGDIIINDSHNLKDINL----- 455 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC-CCeEEEeCCcchhhCCH-----
Confidence 599999999997532246999999999999999999999999999999999999887 8999884 443211000
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhhcCC--------------------------------------------
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVE-------------------------------------------- 126 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------------------------------------- 126 (294)
..++..++++++ ..++.....+++.++..
T Consensus 456 ------~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1466)
T PTZ00265 456 ------KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529 (1466)
T ss_pred ------HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccccc
Confidence 112333444444 22333322233333210
Q ss_pred -------------CCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCC
Q 022663 127 -------------GSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180 (294)
Q Consensus 127 -------------~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~g 180 (294)
....+.+.++++.+++. ....+.+||||||||++|||||+.+|+||||||||++
T Consensus 530 ~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred chhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 01123344555555431 1355778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 181 LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
||+.++..+.+.|.++.++.|+|+|+|||+++.+ +.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 9999999999999988654589999999999988 579999999986
No 331
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=9.8e-39 Score=293.67 Aligned_cols=182 Identities=26% Similarity=0.332 Sum_probs=144.2
Q ss_pred EECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc-ccccccccHHHH-hhc
Q 022663 47 LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG 124 (294)
Q Consensus 47 liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 124 (294)
|+||||||||||+|+|+|++.|+ +|.+.++|.+...... ....++++++ ..+++.++..++ .++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~-~G~I~i~g~~i~~~~~-------------~~~~i~~v~q~~~l~~~~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTNVPP-------------HLRHINMVFQSYALFPHMTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCCH-------------HHCCEEEEecCccccCCCcHHHHHHHH
Confidence 68999999999999999998886 8999998865421100 1122333333 234445554443 332
Q ss_pred CC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 022663 125 VE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196 (294)
Q Consensus 125 ~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~ 196 (294)
.. ... ..+..++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 67 LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 21 111 23456788888885 57889999999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 197 CEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 197 ~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
.++.|.|||+||||++++..+||+|++|++|+++..|+++++.+..
T Consensus 147 ~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 7767899999999999999999999999999999999999887643
No 332
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=315.39 Aligned_cols=218 Identities=23% Similarity=0.303 Sum_probs=166.0
Q ss_pred ccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 12 NSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+.........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~i~~~~~~~~- 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT-SGTYRVAGQDVATLDADAL- 80 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEcCcCCHHHH-
Confidence 4799999999996311 246999999999999999999999999999999999998876 8999998875432110000
Q ss_pred CCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
....+..+++.++ ..+++..+. +++.+.. ... ..++..++++.+++. .++.+.+||+||+||++
T Consensus 81 ------~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~ 154 (648)
T PRK10535 81 ------AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVS 154 (648)
T ss_pred ------HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHH
Confidence 0000112233332 223333443 3322211 111 122456678888885 47889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
|||||+.+|++|||||||+|||+.+++.+.++|.++++ .+.|+|++||+++.+. .||++++|++|++++.|+.++..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999998764 5899999999999886 69999999999999999887664
No 333
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.9e-38 Score=309.78 Aligned_cols=196 Identities=24% Similarity=0.361 Sum_probs=152.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++. ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|+ +|.+.++|.+...-.
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~I~~~g~~i~~~~------- 390 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLADAD------- 390 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEehhhCC-------
Confidence 69999999999752 247999999999999999999999999999999999999887 899999887643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR 158 (294)
...+++.++++++. .++.....+++.++......+...++++..++. . ......||||||||
T Consensus 391 ----~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 391 ----ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred ----HHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 11233445555553 344443344444443333445555566655431 1 23456799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
++|||||+++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 999999999999999999999999999999999998764 4799999999999875 69999875
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=261.92 Aligned_cols=156 Identities=31% Similarity=0.439 Sum_probs=129.0
Q ss_pred EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663 16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 95 (294)
++++++.|++ ..+|+++||+|++|++++|+|+||||||||+++|+|++.++ .|.+.+++.......
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~---------- 67 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLP---------- 67 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCC----------
Confidence 6789999975 46999999999999999999999999999999999998775 888877664321000
Q ss_pred ccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEee
Q 022663 96 LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLD 175 (294)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLD 175 (294)
.. .....+. ...+||+||+||++|||+++.+|+++|||
T Consensus 68 ----------------------~~---------------~~~~~i~-----~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 68 ----------------------LE---------------ELRRRIG-----YVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred ----------------------HH---------------HHHhceE-----EEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00 0000000 01129999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 176 EITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 176 EPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
|||++||+.++..+.+.|.++... +.|+|++||+++++..+||++++|++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999987654 7899999999999999999999999874
No 335
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-38 Score=260.46 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=178.2
Q ss_pred cccEEEcceEEEcCCCC------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc
Q 022663 11 LNSIKVCGMQFSYEGND------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD 84 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~ 84 (294)
++.|+++|++|.|.... ...+++.|||++++|+.++|||.||||||||.|+|+|.+.|. +|.+.+++......
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT-sG~il~n~~~L~~~ 80 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGEILINDHPLHFG 80 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC-CceEEECCcccccc
Confidence 45799999999885311 134789999999999999999999999999999999999887 99999998765332
Q ss_pred ccccccCCcccccccccccccccCcccccccccHHHHhhc-C---CCCc----HHHHHHHHHHcCCC---cccccccCCH
Q 022663 85 TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-V---EGSD----PVRRERLIELLDID---LQWRMHKVSD 153 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~----~~~~~~~l~~l~l~---~~~~~~~LSg 153 (294)
........+..+.++... .+-+.+..-.++-+ + ..++ .+++.+-+..+|+. .+-++..||.
T Consensus 81 Dy~~R~k~IRMiFQDpnt--------s~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~ 152 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNT--------SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAP 152 (267)
T ss_pred chHhhhhheeeeecCCcc--------ccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCc
Confidence 111112222222221110 11111111111100 0 1111 22334556677774 4568899999
Q ss_pred HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
||||||+|||||+.+|+|+|.||..++||...+.++.+++.++.++.|.+.|+|+.++..+..++|.|++|+.|++++.|
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred cHHHHHHhhhhhhhHHHHHHHHhh
Q 022663 234 KLAELDELRNSTNLLSVVESWLRS 257 (294)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ 257 (294)
++.+++..+...-.-+.+++++.+
T Consensus 233 ~t~~v~a~P~~~~TkRlieShFg~ 256 (267)
T COG4167 233 STADVLASPLHELTKRLIESHFGE 256 (267)
T ss_pred ChhhhhcCCccHHHHHHHHHHhcc
Confidence 999998876654334455555543
No 336
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.3e-38 Score=310.88 Aligned_cols=182 Identities=25% Similarity=0.371 Sum_probs=145.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...
T Consensus 334 ~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~--------- 401 (529)
T TIGR02868 334 TLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSS--------- 401 (529)
T ss_pred eEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhh---------
Confidence 5999999999975 246999999999999999999999999999999999999887 8999999876432
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
+ ...++..++++++. .++.....+|+.++....+.++..++++..+++ .+ .....||||||||
T Consensus 402 --~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 402 --L-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred --H-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 1 22345556666663 345444455655654444556666677766542 12 2345699999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
++|||||+++|++||||||||+||+++...+.+.|.++. .++|+|+|||++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 999999999999999999999999999999999998753 478999999984
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.1e-38 Score=335.74 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=168.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|+.. .+++|+||||+|++||.+||+|++|||||||+++|.|++.|+ +|.|.++|.+...-.
T Consensus 1284 ~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~-~G~I~IdG~dI~~i~------- 1354 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-EGEIIIDGLNIAKIG------- 1354 (1522)
T ss_pred cEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC-CCeEEECCEEccccC-------
Confidence 59999999999652 246999999999999999999999999999999999999887 899999998753211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQW----RMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqkqR 158 (294)
...++..+++++|. .++.. |..+++........+...++++..++. ++. ....||||||||
T Consensus 1355 ----~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1355 ----LHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred ----HHHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 11234455555553 34443 444444222233445555666655431 233 345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|+|||||||||+||.++...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+|++.|+++++
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998754 37899999999998886 899999999999999999999
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 1507 l~~ 1509 (1522)
T TIGR00957 1507 LQQ 1509 (1522)
T ss_pred HhC
Confidence 765
No 338
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.2e-38 Score=334.90 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=168.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++. .+++|+||||+|++||.+||+|++|||||||+++|.|++.|+ +|.|.++|.+...-.
T Consensus 1308 ~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~------- 1378 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYG------- 1378 (1560)
T ss_pred eEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCC-------
Confidence 59999999999652 246999999999999999999999999999999999999887 899999998753211
Q ss_pred cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR 158 (294)
...++..+++++|.+ ++.. |..+++......+.+.+.++++..++. ++ .....||||||||
T Consensus 1379 ----l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr 1453 (1560)
T PTZ00243 1379 ----LRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453 (1560)
T ss_pred ----HHHHHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH
Confidence 123445566666643 4443 444444322233455566677666542 22 2345799999999
Q ss_pred HHHHHHHccC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 159 VQICMGLLHP-FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 159 v~lAraL~~~-p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
++|||||+++ |+|||||||||+||+.+.+.+.+.|.+.. .++|||+|+|+++.+.. ||+|++|++|+|++.|++++
T Consensus 1454 LaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 9999999996 89999999999999999999999998753 37899999999998875 99999999999999999999
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 1531 Ll~~ 1534 (1560)
T PTZ00243 1531 LVMN 1534 (1560)
T ss_pred HHhC
Confidence 9764
No 339
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1e-37 Score=262.35 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=125.0
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
.++|+|+||+|++|++++|+||||||||||||+|.+ + .|.+.+.+..... .+..+.++.
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~-~G~v~~~~~~~~~----------------~~~~~~~~~ 66 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A-SGKARLISFLPKF----------------SRNKLIFID 66 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c-CCcEEECCccccc----------------ccccEEEEh
Confidence 568999999999999999999999999999999964 2 5666554331100 000000000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC--CCEEEeeCCCCCCCH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP--FKVLLLDEITVDLDV 183 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~--p~iLlLDEPt~gLD~ 183 (294)
. .++++.+++. .++++.+||||||||++|||||+.+ |++|||||||++||+
T Consensus 67 ---------------------q---~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 67 ---------------------Q---LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ---------------------H---HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 0 3456777763 4778999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
.++..+.+.|.++++ .|.|||+|||+++++ ..||++++|++|.....
T Consensus 123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 123 QDINQLLEVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCCCCC
Confidence 999999999998864 689999999999987 57999999987655433
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.5e-38 Score=313.86 Aligned_cols=222 Identities=19% Similarity=0.231 Sum_probs=153.4
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc---ccCCCceEEecCCccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH---MVGGRDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~---~~~~~g~i~~~~~~~~~~~~ 86 (294)
+..+|+++|++++|++ +++|+|+||+|.+|+++|||||||||||||||+|+|.. .|+ .|.+.+.++.......
T Consensus 174 ~~~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~-~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 174 AIKDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK-NCQILHVEQEVVGDDT 249 (718)
T ss_pred CceeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC-CCEEEEEeccCCCCCC
Confidence 3457999999999975 46999999999999999999999999999999999853 233 5666544432110000
Q ss_pred cc----ccCCcccccccccccccccCcc--------------cccccccHH-------HHh--hcC-CCC-cHHHHHHHH
Q 022663 87 LV----CSGDLSYLGGSWSKTVGSAGEI--------------PLQGDFSAE-------HMI--FGV-EGS-DPVRRERLI 137 (294)
Q Consensus 87 ~~----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-------~~~--~~~-~~~-~~~~~~~~l 137 (294)
.. ........ ......+++..+. +........ +.. +.. ..+ ...++..++
T Consensus 250 t~~~~v~~~~~~~~-~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 250 TALQCVLNTDIERT-QLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 00 00000000 0000001100000 000000000 000 111 111 133556778
Q ss_pred HHcCCC---cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663 138 ELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL 214 (294)
Q Consensus 138 ~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~ 214 (294)
..+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++
T Consensus 329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l 404 (718)
T PLN03073 329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFL 404 (718)
T ss_pred HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHH
Confidence 888884 46789999999999999999999999999999999999999999999998764 78999999999999
Q ss_pred HhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663 215 ETWATHLAYIQDGELR-RAEKLAELDE 240 (294)
Q Consensus 215 ~~~~d~v~~l~~G~i~-~~g~~~~~~~ 240 (294)
..+||+|++|++|++. +.|+++.+..
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999996 6777765543
No 341
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.3e-37 Score=263.50 Aligned_cols=207 Identities=20% Similarity=0.293 Sum_probs=164.6
Q ss_pred ccEEEcceEEEcCCC---------------------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC
Q 022663 12 NSIKVCGMQFSYEGN---------------------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG 70 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~---------------------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~ 70 (294)
++|+++||++.|.-. ....+|+||||++.+||.+||||+||||||||+|+|+|.++|+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt- 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT- 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC-
Confidence 367888888876311 1235999999999999999999999999999999999999987
Q ss_pred CceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHh------hcCCCC-cHHHHHHHHHHcCCC
Q 022663 71 RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI------FGVEGS-DPVRRERLIELLDID 143 (294)
Q Consensus 71 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~l~l~ 143 (294)
+|.+.+.|+.... +. + ...+.+.+|..+++ .++... -.+..+++.+.-++.
T Consensus 81 ~G~v~v~G~v~~l----------------i~--l----g~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG 138 (249)
T COG1134 81 SGKVKVTGKVAPL----------------IE--L----GAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG 138 (249)
T ss_pred CceEEEcceEehh----------------hh--c----ccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 8998887763210 00 0 01223445544433 222211 123455666665664
Q ss_pred --cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663 144 --LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL 221 (294)
Q Consensus 144 --~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v 221 (294)
.+.++..+|-||+-|+++|.|...+|+|||+||-.+--|+.-+++-.+.+.++.++ +.|||+||||++.+.++||++
T Consensus 139 ~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~ 217 (249)
T COG1134 139 DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRA 217 (249)
T ss_pred HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCee
Confidence 68899999999999999999999999999999999999999999999999998654 799999999999999999999
Q ss_pred EEeeCCeEEecccHHHHHHhh
Q 022663 222 AYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 222 ~~l~~G~i~~~g~~~~~~~~~ 242 (294)
++|++|+++..|.++++.+.+
T Consensus 218 i~l~~G~i~~~G~~~~vi~~Y 238 (249)
T COG1134 218 IWLEHGQIRMEGSPEEVIPAY 238 (249)
T ss_pred EEEeCCEEEEcCCHHHHHHHH
Confidence 999999999999999987654
No 342
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.5e-37 Score=295.41 Aligned_cols=202 Identities=24% Similarity=0.304 Sum_probs=158.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
...++++|+++.|++ ++++++++||.|.+|+.+||+||||+|||||||+|+|...|. +|.+.+....
T Consensus 319 ~~vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETV---------- 385 (530)
T ss_pred CeeEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCce----------
Confidence 457999999999975 257999999999999999999999999999999999987776 7777653221
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhc-CCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-VEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+.|+.|.... +....+..+.+.. ........+...+..|++. ..+++..||||||.|+.||+.++
T Consensus 386 -~igyf~Q~~~~---------l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 -KIGYFDQHRDE---------LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred -EEEEEEehhhh---------cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc
Confidence 23444433211 1122233332221 1122245567788888885 46789999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec-ccHHHHHH
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA-EKLAELDE 240 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~~~ 240 (294)
.+|.+||||||||+||..++..+.+.|.+ +..|||+||||.+++.++|++++++.+ ++... |.++++.+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~----f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLD----FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999998888865 578999999999999999999999998 65544 77777654
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.3e-37 Score=283.39 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=169.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
...|.++++++.=++. ++++++++||++.+||.+|||||||||||||.|+|.|..+|. +|.+.++|.+..+-
T Consensus 332 ~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~-~G~VRLDga~l~qW------ 403 (580)
T COG4618 332 QGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT-SGSVRLDGADLRQW------ 403 (580)
T ss_pred CceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC-CCcEEecchhhhcC------
Confidence 4479999999976553 468999999999999999999999999999999999988876 99999998765321
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcC-------C--Ccccc----cccCCHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-------I--DLQWR----MHKVSDGQR 156 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l--~~~~~----~~~LSgGqk 156 (294)
....+-+.++|.++ +.+++....+|+...-...+.+.+-++.+.-+ + .-+.. ...||||||
T Consensus 404 -----d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 404 -----DREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred -----CHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 11223345666665 56666665666543333344444333333222 1 12333 357999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
||++|||||..+|.+++||||-++||.+....+.+.|.... ..|.|+|+|||.+..+. .+|+|++|++|++...|+.+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999999999999999875 56999999999999665 69999999999999999999
Q ss_pred HHHHh
Q 022663 237 ELDEL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
++...
T Consensus 557 eVLa~ 561 (580)
T COG4618 557 EVLAK 561 (580)
T ss_pred HHHHH
Confidence 88653
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.1e-37 Score=304.36 Aligned_cols=196 Identities=20% Similarity=0.275 Sum_probs=143.8
Q ss_pred ceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-----------ecCCccccccc
Q 022663 18 GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-----------VLNRSSFHDTQ 86 (294)
Q Consensus 18 ~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-----------~~~~~~~~~~~ 86 (294)
+++++|++ +..+|++++ .+++|+++||+||||||||||+|+|+|++.|+ .|.+. +.|.+......
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHHH
Confidence 48899975 246899999 99999999999999999999999999998887 78875 44433211000
Q ss_pred ccccCCcccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
........ ......++.+.+ ++.. +..+++... ....+..++++.+++. .++.+.+|||||+|||+||+
T Consensus 154 ~~~~~~~~-----~~~~~q~~~~~p~~~~~-tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 154 KLYNGEIK-----VVHKPQYVDLIPKVFKG-KVRELLKKV--DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA 225 (590)
T ss_pred HHhccCcc-----eeecccchhhhhhhhcc-hHHHHHHhh--hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 00000000 000011111111 1111 333332111 1234567788889885 58899999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
||+.+|++|||||||++||+..+..+.++|.++.+ |.|||+||||++++..+||+|++|+++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999998854 899999999999999999999999863
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=258.80 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=161.9
Q ss_pred cEEEcceEEEcCCC--CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGN--DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~--~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
|+++.|+++.|... ..+++|+++|++|++|+++.|+|.||||||||+++|+|.+.|+ +|.|.++|.+..........
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t-~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC-CceEEECceecccCCHHHHh
Confidence 46778888887431 1357999999999999999999999999999999999998887 99999999875432211111
Q ss_pred CCcccccccccccccccCcc---cccccccHHHHh-hc-CC----CC----c---HHHHHHHHHHcCCC----ccccccc
Q 022663 91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-FG-VE----GS----D---PVRRERLIELLDID----LQWRMHK 150 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~-~~----~~----~---~~~~~~~l~~l~l~----~~~~~~~ 150 (294)
. .+..+++. ...+.+|.++++ .. .. +. . .+.....++.+++. ++.++.-
T Consensus 80 ~-----------~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl 148 (263)
T COG1101 80 N-----------LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL 148 (263)
T ss_pred h-----------HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh
Confidence 1 11122222 234566665543 11 11 11 1 11223344555543 5678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||||-++|+.|.++.|+||+|||-|++|||.....+++.-.++.++.+.|.+||||+++.+..|.+|.++|++|+|+
T Consensus 149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccc
Q 022663 231 RAEK 234 (294)
Q Consensus 231 ~~g~ 234 (294)
.+-.
T Consensus 229 lDv~ 232 (263)
T COG1101 229 LDVT 232 (263)
T ss_pred EEcc
Confidence 8644
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.5e-37 Score=326.58 Aligned_cols=210 Identities=20% Similarity=0.275 Sum_probs=166.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|+.. .+++|+||||+|++||.+||+|+||||||||+++|+|++. .+|.|.++|.+...-.
T Consensus 1217 ~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~------- 1286 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVT------- 1286 (1490)
T ss_pred eEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCC-------
Confidence 69999999999742 3579999999999999999999999999999999999875 3899999997653211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQW----RMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqkqR 158 (294)
...++..+++++|. .++.. |..+++........+...++++..++. ++. ....||||||||
T Consensus 1287 ----~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271 1287 ----LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred ----HHHHHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence 11234445555553 34443 444444222223455566677766542 222 234799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+|++.|++.++
T Consensus 1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998754 37999999999998875 999999999999999999998
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
.+
T Consensus 1439 l~ 1440 (1490)
T TIGR01271 1439 LN 1440 (1490)
T ss_pred Hc
Confidence 75
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-36 Score=302.42 Aligned_cols=185 Identities=20% Similarity=0.317 Sum_probs=140.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++++ +|.+.+++. .
T Consensus 450 ~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~-~G~i~~~~~-----------~ 515 (659)
T TIGR00954 450 NGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY-GGRLTKPAK-----------G 515 (659)
T ss_pred CeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEeecCC-----------C
Confidence 46999999999964 246999999999999999999999999999999999998765 677765321 1
Q ss_pred CcccccccccccccccCcccccccccH-HHHhhcC-------CCCcHHHHHHHHHHcCCC--ccc---------ccccCC
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGV-------EGSDPVRRERLIELLDID--LQW---------RMHKVS 152 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~l~~l~l~--~~~---------~~~~LS 152 (294)
.+.+++|. ..++.. +. +++.++. .....++..++++.+++. .++ ...+||
T Consensus 516 ~i~~v~Q~----------~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 516 KLFYVPQR----------PYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred cEEEECCC----------CCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 22333221 112222 33 3333321 112234556777777763 222 236899
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
||||||++|||||+++|++|||||||++||+.++..+.+.+.+ .|.|+|+|||+++.+ ++||++++|+.
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999999999999999999988764 389999999999986 57999999973
No 348
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.7e-36 Score=300.55 Aligned_cols=198 Identities=19% Similarity=0.250 Sum_probs=155.9
Q ss_pred CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCcccccccccccCCccccccccccccc
Q 022663 28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105 (294)
Q Consensus 28 ~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (294)
++++|+|+|++|++||+++|+|||||||||||++|+|...+. ..|.+.++|.+... ..+++.++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--------------~~~~~~i~ 102 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--------------KEMRAISA 102 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--------------HHHhhhce
Confidence 367999999999999999999999999999999999987653 36888888864311 01122344
Q ss_pred ccCc-ccccccccHHHHh-hcC--C--C-Cc----HHHHHHHHHHcCCC--cccccc------cCCHHHHHHHHHHHHHc
Q 022663 106 SAGE-IPLQGDFSAEHMI-FGV--E--G-SD----PVRRERLIELLDID--LQWRMH------KVSDGQRRRVQICMGLL 166 (294)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~-~~~--~--~-~~----~~~~~~~l~~l~l~--~~~~~~------~LSgGqkqRv~lAraL~ 166 (294)
++.+ ..+++.+|..+.+ +.. . . .. .++++++++.+++. .+..++ .|||||||||+||++|+
T Consensus 103 yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~ 182 (617)
T TIGR00955 103 YVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL 182 (617)
T ss_pred eeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHH
Confidence 4444 2345555655433 221 1 1 11 22457788888884 355554 59999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. .+.++||++++|++|++++.|+++++.+
T Consensus 183 ~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 183 TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999999999999999999999999999875 4999999999995 7888999999999999999999987744
No 349
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-36 Score=321.80 Aligned_cols=207 Identities=22% Similarity=0.271 Sum_probs=160.8
Q ss_pred cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCcccccccccc
Q 022663 13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~~ 89 (294)
+|+++||++.|+.. +.+.+|+|||++|++||+++|+|||||||||||++|+|...+ ..+|.+.++|.+...
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~------ 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS------ 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh------
Confidence 58999999999521 135799999999999999999999999999999999998762 236899988865311
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHHh-hc--CC---CCc----HHHHHHHHHHcCCC--cccccc----cCC
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VE---GSD----PVRRERLIELLDID--LQWRMH----KVS 152 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~---~~~----~~~~~~~l~~l~l~--~~~~~~----~LS 152 (294)
.+++.++++.+ ..+.+..+..+.+ +. .. ... .++++++++.+++. .++.++ .||
T Consensus 833 ---------~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS 903 (1394)
T TIGR00956 833 ---------SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903 (1394)
T ss_pred ---------hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC
Confidence 01222333333 2234455554433 21 11 111 13456788888885 466665 799
Q ss_pred HHHHHHHHHHHHHccCCC-EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEEEeeCC-eE
Q 022663 153 DGQRRRVQICMGLLHPFK-VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG-LETWATHLAYIQDG-EL 229 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~-iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~~l~~G-~i 229 (294)
|||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|.|||+++|+++. +.+.+|++++|++| ++
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 999999999999999997 9999999999999999999999999865 58999999999986 45789999999997 99
Q ss_pred EecccH
Q 022663 230 RRAEKL 235 (294)
Q Consensus 230 ~~~g~~ 235 (294)
++.|++
T Consensus 983 v~~G~~ 988 (1394)
T TIGR00956 983 VYFGDL 988 (1394)
T ss_pred EEECCc
Confidence 999886
No 350
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-37 Score=282.19 Aligned_cols=212 Identities=21% Similarity=0.322 Sum_probs=167.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
-|+++||+|.|.. ++++|+||||++.+|+.++|+||||+||||++|++....... +|.|.++|++...-..
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~-sGsI~iDgqdIrnvt~------ 607 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN-SGSITIDGQDIRNVTQ------ 607 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc-CceEEEcCchHHHHHH------
Confidence 5999999999975 478999999999999999999999999999999999987765 8999999987643211
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcC-------CC------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-------ID------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~------~~~~~~~LSgGqkqR 158 (294)
...+..++.+++ ..++++.-..++.++......+.+.++.+..+ .. ...+.-.||||||||
T Consensus 608 -----~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 608 -----SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred -----HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 123445555554 23444443444445444333333333333322 21 123445799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||++++.|.+++|||.||+||..+.+.|...|.++|+ +.|-|+|.|.+..+-+ ||.|+++++|+|++.|..+++
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEEL 759 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHH
Confidence 9999999999999999999999999999999999999985 6799999999998875 999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
...
T Consensus 760 l~r 762 (790)
T KOG0056|consen 760 LKR 762 (790)
T ss_pred Hhc
Confidence 765
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=252.70 Aligned_cols=214 Identities=21% Similarity=0.223 Sum_probs=160.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
.+|+++||+.+-.+ ++.||++|||+|++||+.+|+||||||||||.++|+|.- .+. .|.|.++|.+...-....
T Consensus 2 ~~L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt-~G~I~~~GedI~~l~~~E- 77 (251)
T COG0396 2 MMLEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT-EGEILFDGEDILELSPDE- 77 (251)
T ss_pred ceeEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe-cceEEECCcccccCCHhH-
Confidence 47999999999875 148999999999999999999999999999999999953 343 899999998754321100
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHHhh-cC---CC------CcHHHHHHHHHHcCCC---cccccc-cCCHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-GV---EG------SDPVRRERLIELLDID---LQWRMH-KVSDG 154 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~---~~------~~~~~~~~~l~~l~l~---~~~~~~-~LSgG 154 (294)
. .+..+...+| ++-.+..+..+++. .. .. .......+.++.++++ +++.+. .+|||
T Consensus 78 ---R------Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGG 148 (251)
T COG0396 78 ---R------ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGG 148 (251)
T ss_pred ---H------HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcc
Confidence 0 0011111122 22223333333221 00 00 0123445677888886 467765 59999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh-ceEEEeeCCeEEecc
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA-THLAYIQDGELRRAE 233 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~-d~v~~l~~G~i~~~g 233 (294)
||+|..|+.+++.+|++.|||||-||||..+-+.+.+.+..+.. .|.++++|||.-+.+..+- |+|.+|-+|+|+..|
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 5999999999998777553 999999999999999
Q ss_pred cHHHHHH
Q 022663 234 KLAELDE 240 (294)
Q Consensus 234 ~~~~~~~ 240 (294)
.+ ++..
T Consensus 228 ~~-el~~ 233 (251)
T COG0396 228 DP-ELAE 233 (251)
T ss_pred CH-HHHH
Confidence 99 5543
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-35 Score=318.23 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=154.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|++|+|+...++++|+|+||+|++|+.++|+||+|||||||+++|.|.+.|..++...+ .+.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~-------------~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI-------------RGS 680 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe-------------cCc
Confidence 5999999999974223579999999999999999999999999999999999988863333321 122
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv 159 (294)
+.|.+|. +.++.....+|+.++. ..+.++..++++..++. ...+...||||||||+
T Consensus 681 Iayv~Q~----------p~Lf~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 749 (1495)
T PLN03232 681 VAYVPQV----------SWIFNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV 749 (1495)
T ss_pred EEEEcCc----------cccccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence 3333322 2233333345555554 34555666666665541 1233457999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+||||+.++|+|||||||||+||+.+.+.+++. +.... .++|+|+|||++..+. .||+|++|++|++++.|+.+++
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999888765 44332 4799999999999765 6999999999999999999988
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 827 ~~~ 829 (1495)
T PLN03232 827 SKS 829 (1495)
T ss_pred Hhc
Confidence 653
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-35 Score=317.52 Aligned_cols=201 Identities=19% Similarity=0.293 Sum_probs=154.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|++++|++. .+++|+|+||+|++|++++|+||||||||||+++|+|++.|. .|.+.++|.
T Consensus 636 ~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~------------- 700 (1522)
T TIGR00957 636 SITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGS------------- 700 (1522)
T ss_pred cEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC-CcEEEECCE-------------
Confidence 69999999999642 247999999999999999999999999999999999998886 788876542
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCC------C-------cccccccCCHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI------D-------LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l------~-------~~~~~~~LSgGqkqRv 159 (294)
+.|.+|. ..++.....+++.++.. .+.++.+++++..++ . .+.+..+||||||||+
T Consensus 701 i~yv~Q~----------~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRi 769 (1522)
T TIGR00957 701 VAYVPQQ----------AWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 769 (1522)
T ss_pred EEEEcCC----------ccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHH
Confidence 2333322 11222222334444322 233333333333221 1 2456778999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-HhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC-EQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~-~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+||||++.+|+++||||||++||+.+.+.+++.+.+.. ...++|+|+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999886531 1247899999999998875 999999999999999999888
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
.+
T Consensus 849 ~~ 850 (1522)
T TIGR00957 849 LQ 850 (1522)
T ss_pred Hh
Confidence 65
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.1e-35 Score=316.63 Aligned_cols=201 Identities=24% Similarity=0.391 Sum_probs=155.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCC-ceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR-DVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~-g~i~~~~~~~~~~~~~~~~~ 91 (294)
.|+++|++|+|+...++++|+|+||+|++|+.++|+||+|||||||+++|.|.+.+. + |.+.+.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~GG~I~l~~------------- 679 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR-SDASVVIRG------------- 679 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC-CCceEEEcC-------------
Confidence 699999999997422357999999999999999999999999999999999998886 5 6765322
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
.+.|.+|. +-++.....+|+.++.. .+.++..++++..++. ...+...||||||||
T Consensus 680 ~Iayv~Q~----------p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR 748 (1622)
T PLN03130 680 TVAYVPQV----------SWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR 748 (1622)
T ss_pred eEEEEcCc----------cccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH
Confidence 23333322 22333333445555533 3555666666665541 123445799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLD-FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
++||||+..+|+|||||||||+||+...+.+++ .+.... .++|+|+|||++..+. .||+|++|++|++++.|+.++
T Consensus 749 IaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 749 VSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999888764 455443 4799999999998765 599999999999999999998
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 826 L~~~ 829 (1622)
T PLN03130 826 LSNN 829 (1622)
T ss_pred HHhc
Confidence 8653
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-35 Score=312.34 Aligned_cols=208 Identities=18% Similarity=0.294 Sum_probs=158.7
Q ss_pred cEEEcceEEEcCCC----------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCcc
Q 022663 13 SIKVCGMQFSYEGN----------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSS 81 (294)
Q Consensus 13 ~l~~~~ls~~y~~~----------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~ 81 (294)
.++++||++..+.. +++.+|+|||++|++|++++|+|||||||||||++|+|...+ ..+|.+.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999987421 124699999999999999999999999999999999997543 1267888877643
Q ss_pred cccccccccCCcccccccccccccccCc-ccccccccHHHHh-hc----CC-CCc----HHHHHHHHHHcCCC--ccccc
Q 022663 82 FHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG----VE-GSD----PVRRERLIELLDID--LQWRM 148 (294)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~----~~-~~~----~~~~~~~l~~l~l~--~~~~~ 148 (294)
... .+++.++++.+ ..+.+.+++.+.+ +. .. ... ...++++++.+++. .++.+
T Consensus 947 ~~~--------------~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v 1012 (1470)
T PLN03140 947 KQE--------------TFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012 (1470)
T ss_pred ChH--------------HhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc
Confidence 110 01122333333 2334455655433 21 11 111 12356788888885 35554
Q ss_pred -----ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEE
Q 022663 149 -----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLA 222 (294)
Q Consensus 149 -----~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~ 222 (294)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+++ .+...||+++
T Consensus 1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEE
Confidence 58999999999999999999999999999999999999999999999875 4899999999998 4778999999
Q ss_pred EeeC-CeEEecccH
Q 022663 223 YIQD-GELRRAEKL 235 (294)
Q Consensus 223 ~l~~-G~i~~~g~~ 235 (294)
+|++ |++++.|++
T Consensus 1092 lL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1092 LMKRGGQVIYSGPL 1105 (1470)
T ss_pred EEcCCCEEEEECCc
Confidence 9996 899999885
No 356
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.2e-35 Score=256.60 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=88.6
Q ss_pred HHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 022663 134 ERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208 (294)
Q Consensus 134 ~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivs 208 (294)
.++++.+++. .++++.+|||||+|||+|||||+.+| ++|||||||+|||+..+..+.++|.++++ .|.|||+||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~it 196 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVE 196 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 4577888874 47789999999999999999999998 59999999999999999999999998864 589999999
Q ss_pred CChhHHHhhhceEEEe------eCCeEEecc
Q 022663 209 HIFDGLETWATHLAYI------QDGELRRAE 233 (294)
Q Consensus 209 Hd~~~~~~~~d~v~~l------~~G~i~~~g 233 (294)
||++++ .+||++++| ++|+|+++|
T Consensus 197 H~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 197 HDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999987 589999999 999998865
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=244.31 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=146.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+++.+||+..-+. .++|.++||++.+||++-|.||||||||||||+|+|+..|+ +|.+.+.+........
T Consensus 2 ~L~a~~L~~~R~e---~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~------ 71 (209)
T COG4133 2 MLEAENLSCERGE---RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRE------ 71 (209)
T ss_pred cchhhhhhhccCc---ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchh------
Confidence 5788999988765 68999999999999999999999999999999999999987 9999988765422111
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hc--CCC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
.+.....|.+. ..+...+|+.|++ |. ... .+...+.++++.+++. .|.++.+||-|||+||+|||.+
T Consensus 72 ------~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ 145 (209)
T COG4133 72 ------SYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW 145 (209)
T ss_pred ------hHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH
Confidence 11112222222 3344556665543 22 112 2345677889999985 6889999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
++.++++||||||++||...+..+-.++...+. .|..||.+||..--+.
T Consensus 146 ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~~ 194 (209)
T COG4133 146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPIA 194 (209)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCCC
Confidence 999999999999999999999999999988875 4888999999976543
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8e-35 Score=309.02 Aligned_cols=200 Identities=18% Similarity=0.178 Sum_probs=153.0
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc---cCCCceEEecCCcccccccccccCCccccccccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM---VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (294)
+++|+|+|+++++||+++|+||||||||||||+|+|... ...+|.+.++|.+..... ...+..++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~------------~~~r~~i~ 141 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK------------KHYRGDVV 141 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH------------hhcCceeE
Confidence 469999999999999999999999999999999999752 223899999886532100 00111233
Q ss_pred ccCc-ccccccccHHHHh-hcC--C-------CCc-HH---H-HHHHHHHcCCC--ccc-----ccccCCHHHHHHHHHH
Q 022663 106 SAGE-IPLQGDFSAEHMI-FGV--E-------GSD-PV---R-RERLIELLDID--LQW-----RMHKVSDGQRRRVQIC 162 (294)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~-~~~--~-------~~~-~~---~-~~~~l~~l~l~--~~~-----~~~~LSgGqkqRv~lA 162 (294)
++.+ ..+++.+++.+.+ +.. . ... .+ + .+.+++.+++. .++ .+..|||||||||+||
T Consensus 142 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA 221 (1394)
T TIGR00956 142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221 (1394)
T ss_pred EeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHH
Confidence 3333 2344555654432 211 0 111 11 1 24578888885 233 4568999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+++|++ +.+.+++|+|++|++|+++..|+++++.+
T Consensus 222 ~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 222 EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999999999999999999999999999876689999999996 78899999999999999999999887643
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-34 Score=307.23 Aligned_cols=184 Identities=21% Similarity=0.330 Sum_probs=139.9
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+++|+|+||+|++|++++|+|||||||||||++|+|++.|. .|.+.++|. +.|.+|.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~-~G~i~~~g~-------------iayv~Q~--------- 495 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSGR-------------ISFSPQT--------- 495 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCE-------------EEEEeCC---------
Confidence 35899999999999999999999999999999999998886 788876552 2333221
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHHHHHHHHHccCCCEEEee
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLD 175 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLD 175 (294)
..+++....+++.++.. .+.++..++++..++ . ...+...|||||||||+||||++.+|+++|||
T Consensus 496 -~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD 573 (1490)
T TIGR01271 496 -SWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD 573 (1490)
T ss_pred -CccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11222222334444432 122222222222111 1 23456799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 176 EITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 176 EPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||++||+..+..+++. +..+. .++|+|+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 574 ep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 574 SPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999985 55553 38999999999998875 99999999999999999988764
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=264.48 Aligned_cols=213 Identities=22% Similarity=0.318 Sum_probs=170.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.+.+.+++|.|.. .+++|+++||++++|+.++++||+|+||||++++|...+.+. +|.|.++|++...-..
T Consensus 262 ~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~-sG~I~id~qdir~vtq------ 332 (497)
T COG5265 262 AVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQ------ 332 (497)
T ss_pred eEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc-CceEEEcchhHHHhHH------
Confidence 3789999999976 478999999999999999999999999999999999988876 9999999987643111
Q ss_pred cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------Ccc----cccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------DLQ----WRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~~~----~~~~~LSgGqkqR 158 (294)
+..++.++.+++ ..++.+....++.++......+.+..+.+...+ ..+ .+.-.||||||||
T Consensus 333 -----~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqr 407 (497)
T COG5265 333 -----QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR 407 (497)
T ss_pred -----HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHH
Confidence 123445666655 455655555566665544333333333333222 122 3344699999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||+++.+|+||+|||.||+||..+.+++...|++.. .|.|-++|.|.+..+.. ||.|++|++|+|++.|..+++
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHH
Confidence 999999999999999999999999999999999999875 48899999999998886 999999999999999999998
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
+...
T Consensus 485 l~~~ 488 (497)
T COG5265 485 LAAG 488 (497)
T ss_pred HHcC
Confidence 8753
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=231.11 Aligned_cols=195 Identities=23% Similarity=0.273 Sum_probs=151.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~~~~~~ 90 (294)
++.++||+.+.++ ..+|-++||+|.+|||+.|+||||||||||+..+.|.+.++ -+|.+.+++++...
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~------- 71 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM------- 71 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc-------
Confidence 5899999998876 57999999999999999999999999999999999976543 35777776654311
Q ss_pred CCcccccccccccccccCc-ccccccccHH-HHhhcCCC-----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVEG-----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
.+ .-+++++..++ .-+++.+++. ++.|.+.. ..+.....+++..++. .++.|.+||||||-||++
T Consensus 72 -----lP-a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 72 -----LP-AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred -----cc-hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence 11 11233444443 3345555543 33343322 1223346678888886 588899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
-|+|+..|+.++||||+|.||..-|.++.++.-...+..|..+|.||||.+.+. ...||+.|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 999999999999999999999999999999998888888999999999999887 56677655
No 362
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=293.47 Aligned_cols=216 Identities=24% Similarity=0.356 Sum_probs=176.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..+.++++++.|+.. ..+++++||.|++||+.|++|+|||||||++|+|+|...|+ +|.+.+.|.+.......
T Consensus 563 ~~~~~~~L~k~y~~~--~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t-~G~a~i~g~~i~~~~~~---- 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT-SGEALIKGHDITVSTDF---- 635 (885)
T ss_pred ceEEEcceeeeecch--hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC-cceEEEecCccccccch----
Confidence 478999999999862 22899999999999999999999999999999999999887 88888877765321110
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhh---cCCC---Cc-HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF---GVEG---SD-PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~---~~-~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
......+++.++ ..+...+|.++.+. ...+ .+ ...++.+++.+++. .+++++.+|||+|+|+++
T Consensus 636 ------~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 636 ------QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSF 709 (885)
T ss_pred ------hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHH
Confidence 012334566655 34556677666432 1222 22 23457788888885 678899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|.|++.+|++++|||||+|+||.+|+.+++++.++.+ .|+.||++||.+++++.+|||+.+|.+|++...|+++++...
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 9999999999999999999999999999999999865 466999999999999999999999999999999999998754
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.8e-34 Score=306.01 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=152.6
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCcccccccccccCCcccccccccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGS 106 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
+.+|+|+|+.|++||+++|+||||||||||||+|+|.+.++ -+|.+.++|.+..... ....+.|..|.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~------- 247 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQN------- 247 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEeccc-------
Confidence 56999999999999999999999999999999999987653 2688888886532110 01122332221
Q ss_pred cCcccccccccHHHHh-hc--CCC----------C-cH---------------------------HHHHHHHHHcCCC--
Q 022663 107 AGEIPLQGDFSAEHMI-FG--VEG----------S-DP---------------------------VRRERLIELLDID-- 143 (294)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~--~~~----------~-~~---------------------------~~~~~~l~~l~l~-- 143 (294)
..+++.+|+.+.+ +. ... . .. ...+.+++.+++.
T Consensus 248 ---d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~ 324 (1470)
T PLN03140 248 ---DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDIC 324 (1470)
T ss_pred ---ccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccc
Confidence 2233444544322 21 000 0 00 0134577888885
Q ss_pred c-----ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhh
Q 022663 144 L-----QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETW 217 (294)
Q Consensus 144 ~-----~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~ 217 (294)
. +..++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++.|.|||+++|++ +++..+
T Consensus 325 ~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~l 404 (1470)
T PLN03140 325 KDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDL 404 (1470)
T ss_pred cCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHH
Confidence 1 4567899999999999999999999999999999999999999999999999876689999999996 688899
Q ss_pred hceEEEeeCCeEEecccHHHHHH
Q 022663 218 ATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 218 ~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
+|+|++|++|++++.|+.+++.+
T Consensus 405 fD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 405 FDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred hheEEEeeCceEEEeCCHHHHHH
Confidence 99999999999999999887754
No 364
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.6e-33 Score=299.95 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=138.0
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+++|+|+||+|++|++++|+|||||||||||++|+|++.|+ .|.+.+.+ .+.|.+|.
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~-~G~i~~~~-------------~i~yv~Q~--------- 729 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS-EGRVWAER-------------SIAYVPQQ--------- 729 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECC-------------eEEEEeCC---------
Confidence 46899999999999999999999999999999999998886 77765421 23333322
Q ss_pred cccccccccH-HHHhhcCCCCcHHHHHH---------HHHHc--CCC--cccccccCCHHHHHHHHHHHHHccCCCEEEe
Q 022663 109 EIPLQGDFSA-EHMIFGVEGSDPVRRER---------LIELL--DID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174 (294)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~l~~l--~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlL 174 (294)
..++. .+. +++.++.. .+.++..+ .++.+ ++. .++++.+|||||||||+|||||+.+|++|||
T Consensus 730 -~~l~~-~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 730 -AWIMN-ATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred -CccCC-CcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11222 233 33333221 12222222 22333 232 3567889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 175 DEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||++||+.....+++.+..... .|+|+|++||+++.+. .||+|++|++|+++..|+++++.+.
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999998888764432222 4899999999999985 6999999999999999999988653
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-34 Score=231.79 Aligned_cols=209 Identities=23% Similarity=0.356 Sum_probs=149.7
Q ss_pred cEEEcceEEEcC----CCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYE----GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~----~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~ 88 (294)
.|.++|++|+|- ++-.-++|+++||+++.|||++|-||||||||||||+|-|-+.|+ +|.|.+.-...+-+...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d-~G~I~v~H~g~~vdl~~- 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILVRHEGEWVDLVT- 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC-CceEEEEeCcchhhhhc-
Confidence 689999999983 212357999999999999999999999999999999999999887 77776543322111000
Q ss_pred ccCCcccccccccccccccCcc-cccccccHHHHh------hcCCCC-cHHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMI------FGVEGS-DPVRRERLIELLDID---LQWRMHKVSDGQRR 157 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~l~l~---~~~~~~~LSgGqkq 157 (294)
......-...+..++|+.++ ...+....-+.. .+.... ...+...++..|++. ..-.|.++||||||
T Consensus 82 --a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 82 --AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred --cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence 00000000112233443331 122222222211 122111 123456778888885 25578999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
||.|||.++.+-+||||||||++||..+++.+.++|.+. +..|.++|=|-||.+.=+.+|||++.+..
T Consensus 160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999875 55799999999999999999999987753
No 366
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-33 Score=273.71 Aligned_cols=213 Identities=23% Similarity=0.308 Sum_probs=170.2
Q ss_pred cEEEcceEEEcCCC--CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGN--DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~--~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~ 88 (294)
.+.+++++....+. ..+.+|++||.++++||++||+||+||||||||++|+|.... .-+|.+.++|+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~----- 99 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS----- 99 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch-----
Confidence 47788888877542 136799999999999999999999999999999999997654 247889988853211
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHHhh-----cCCC-----CcHHHHHHHHHHcCCC--cccccc-----c
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-----GVEG-----SDPVRRERLIELLDID--LQWRMH-----K 150 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~l~~l~l~--~~~~~~-----~ 150 (294)
..++...+++.| ..+.+.+|++|.+. .... ...++++++++.|++. .+..++ .
T Consensus 100 ---------~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rg 170 (613)
T KOG0061|consen 100 ---------RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRG 170 (613)
T ss_pred ---------hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCc
Confidence 112333444444 34567788776542 1221 1234578889999985 455554 5
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeE
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGEL 229 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i 229 (294)
+|||||+||+||.-|+.+|.||+|||||+|||..+..++.+.|++++++ |+|||++-|.+. .+.+..|++++|.+|++
T Consensus 171 iSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~ 249 (613)
T KOG0061|consen 171 LSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEV 249 (613)
T ss_pred cccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcE
Confidence 9999999999999999999999999999999999999999999999987 999999999984 67788999999999999
Q ss_pred EecccHHHHHH
Q 022663 230 RRAEKLAELDE 240 (294)
Q Consensus 230 ~~~g~~~~~~~ 240 (294)
++.|++.+..+
T Consensus 250 vy~G~~~~~~~ 260 (613)
T KOG0061|consen 250 VYSGSPRELLE 260 (613)
T ss_pred EEecCHHHHHH
Confidence 99999987654
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-32 Score=242.65 Aligned_cols=102 Identities=20% Similarity=0.296 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663 132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP---FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV 205 (294)
Q Consensus 132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~---p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi 205 (294)
+..++++.+++. +++++.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+++.|.++.+ .|.|||
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvI 226 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVV 226 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 445677888874 4788999999999999999999996 799999999999999999999999998864 589999
Q ss_pred EEeCChhHHHhhhceEEEe------eCCeEEecccH
Q 022663 206 YATHIFDGLETWATHLAYI------QDGELRRAEKL 235 (294)
Q Consensus 206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~ 235 (294)
+||||++++. .||+++.| ++|++++.|++
T Consensus 227 iitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999986 69999999 89999998863
No 368
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=257.19 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=154.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|.+.++|++|+|.+ +..++++++|-|..++.+++|||||||||||||+++|.+.|. .|.+.......
T Consensus 387 ~pvi~~~nv~F~y~~--~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~-~G~vs~~~H~~--------- 454 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD--NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT-IGMVSRHSHNK--------- 454 (614)
T ss_pred CCeEEEeccccCCCC--cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc-ccccccccccc---------
Confidence 578999999999976 347999999999999999999999999999999999998886 55543211100
Q ss_pred CCcccccccccccccccCcccccccccHHH-HhhcCC-CCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVE-GSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL 165 (294)
+.++.|.... +..+ +.+.-+ +.-.+. ....+....++..+|+. ...++++||+|||.||.+|+++
T Consensus 455 --~~~y~Qh~~e------~ldl--~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 --LPRYNQHLAE------QLDL--DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred --chhhhhhhHh------hcCc--chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH
Confidence 0011110000 0011 111111 111122 23455667889999986 3578899999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE-EecccHHHHH
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL-RRAEKLAELD 239 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 239 (294)
+..|.+|||||||+|||..+...+.+.|.+ +..+||+||||..++.+++++|++..+|.+ .+.|++....
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe----~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINE----FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhc----cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 999999999999999999999888888765 467899999999999999999999999876 5677776654
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=3.2e-31 Score=273.96 Aligned_cols=204 Identities=24% Similarity=0.355 Sum_probs=160.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.+.++++|.+++++.....+.|+||||+|++|+.+||+||-|||||+||.+|.|..... +|.+.+.|.
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~-sG~v~v~gs----------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL-SGSVAVNGS----------- 583 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc-cceEEEcCe-----------
Confidence 45799999999997533345899999999999999999999999999999999987665 777766553
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR 157 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq 157 (294)
+.|.+|..+ +++....+|++|+. ..++++.+++++...+. ...+.-+|||||||
T Consensus 584 --iaYv~Q~pW----------I~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq 650 (1381)
T KOG0054|consen 584 --VAYVPQQPW----------IQNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ 650 (1381)
T ss_pred --EEEeccccH----------hhCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH
Confidence 344433211 12222344555553 45677778887776652 12455689999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++||||+-++++|+|||.|+|++|....+.+++-...-.- .++|+|+|||.++++. .||.|++|++|+|.+.|++++
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHH
Confidence 99999999999999999999999999998887765554332 4799999999999877 599999999999999999999
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 729 l~~~ 732 (1381)
T KOG0054|consen 729 LLKS 732 (1381)
T ss_pred HHhc
Confidence 8753
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.9e-31 Score=274.25 Aligned_cols=214 Identities=17% Similarity=0.195 Sum_probs=164.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|++.+|..+ -+.||+||||+|++||.+||||..|||||||+.+|..+..|. +|.|.++|.+...-.-
T Consensus 1138 ~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~-~G~I~IDgvdI~~igL------ 1209 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA-EGEILIDGVDISKIGL------ 1209 (1381)
T ss_pred eEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc-CCeEEEcCeecccccH------
Confidence 69999999999753 367999999999999999999999999999999999998886 8999999987543111
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------Cccc----ccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------DLQW----RMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~LSgGqkqR 158 (294)
.+++..++.++|. .++..... .++-......++..-++++..++ .++. ...++|-||||.
T Consensus 1210 -----~dLRsrlsIIPQdPvLFsGTvR-~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1210 -----HDLRSRLSIIPQDPVLFSGTVR-FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred -----HHHHhcCeeeCCCCceecCccc-cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 1233344444442 23322221 11211112223333344444332 2333 345799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+++++||+|||.|+++|+++-..|.+.|++.-+ ++|||.|-|+++-+.+ ||||+||++|++++.++|.++
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHH
Confidence 9999999999999999999999999999999999988653 7999999999999997 899999999999999999999
Q ss_pred HHhhh
Q 022663 239 DELRN 243 (294)
Q Consensus 239 ~~~~~ 243 (294)
++++.
T Consensus 1361 l~~~~ 1365 (1381)
T KOG0054|consen 1361 LSDKD 1365 (1381)
T ss_pred HhCCc
Confidence 87654
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=2.4e-32 Score=223.15 Aligned_cols=209 Identities=23% Similarity=0.282 Sum_probs=155.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+++++||+..- -|-.+|.++..||++-+||||||||||||-.++|+++ ++|.|.+.|.+............
T Consensus 3 l~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArh 73 (248)
T COG4138 3 LMQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARH 73 (248)
T ss_pred eeeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHH
Confidence 68889988742 2678999999999999999999999999999999764 48999999886432110000111
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcH---HHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDP---VRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
..|..+. +.+.+ .+.+..++. +...+. .....+...++++ +.+..++|||||.|||-+|..+++
T Consensus 74 RAYLsQq---------q~p~f-~mpV~~YL~-L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 74 RAYLSQQ---------QTPPF-AMPVWHYLT-LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHhhc---------cCCcc-hhhhhhhhh-hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 1222111 01100 111122111 111112 2345566677774 678889999999999999998875
Q ss_pred -----CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 168 -----PF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 168 -----~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|| ++||+|||.++||...+..+..+|.++|++ |.+|||++||++-..+.||+++++.+|++...|..++++.
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 33 799999999999999999999999999964 9999999999999999999999999999999999998876
Q ss_pred hh
Q 022663 241 LR 242 (294)
Q Consensus 241 ~~ 242 (294)
..
T Consensus 222 ~~ 223 (248)
T COG4138 222 PP 223 (248)
T ss_pred hH
Confidence 53
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.7e-31 Score=227.71 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=116.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc---------eEEecCCcccccccccccCCccccccccccc
Q 022663 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD---------VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT 103 (294)
Q Consensus 33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (294)
++++|++.+| +++|+||||||||||+++|+|++.+. .+ .+.+.+.+... ......
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 77 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ-SAKSLRGEKMSDVIFAGSETRK--------------PANFAE 77 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccc-cchhhcccCHHHHhccCCCCCC--------------CCceEE
Confidence 6789999999 99999999999999999999976543 11 11111111000 000122
Q ss_pred ccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCC
Q 022663 104 VGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEIT 178 (294)
Q Consensus 104 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt 178 (294)
++++++.+ .+ +.. ...+++.++++. .-..++.+.+||||||||++||++++ .+|+++||||||
T Consensus 78 v~~vfq~~~~~---------~~~--~~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 78 VTLTFDNSDGR---------YSI--ISQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred EEEEEEcCCCc---------eeE--EehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 33332211 11 111 012344555555 21246788999999999999999997 467999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 179 ~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
++||+..+..+.+.|.++.+ +.|||+||||++++ .+||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEEe
Confidence 99999999999999998743 68999999999987 58999999874
No 373
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=4.1e-31 Score=247.19 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=143.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe--cCCcccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV--LNRSSFHDTQLVC 89 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~--~~~~~~~~~~~~~ 89 (294)
..+.++|+++.|.+ ..+++|++|++.+|+.+||+|+|||||||+|++|+|-..|. ...+.+ ....... ..
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~p-s~--- 145 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEP-SE--- 145 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCC-ch---
Confidence 36999999999976 68999999999999999999999999999999999966553 111111 1100000 00
Q ss_pred cCCccccc---ccccccccccCc-cccc-cccc---HHHHhhcCCCCc----HHHHHHHHHHcCCC---cccccccCCHH
Q 022663 90 SGDLSYLG---GSWSKTVGSAGE-IPLQ-GDFS---AEHMIFGVEGSD----PVRRERLIELLDID---LQWRMHKVSDG 154 (294)
Q Consensus 90 ~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgG 154 (294)
.+.+.... ...+..+.+..+ .... .... ..+........+ ..+...++..++.. .++....||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 00000000 000000000000 0000 0000 000000000001 11233445555543 46788999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChhHHHhhhceEEEeeCCe-EEec
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA-TIVYATHIFDGLETWATHLAYIQDGE-LRRA 232 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~-tviivsHd~~~~~~~~d~v~~l~~G~-i~~~ 232 (294)
+++|++|||+|+.+|++|||||||+|||++++.++.+.|.++ .. ++++++|+.+++..+|.+|+.|++++ +.+.
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~----d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY----DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc----cCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 999999999999999999999999999999998888888754 34 89999999999999999999999999 6788
Q ss_pred ccHHHHHH
Q 022663 233 EKLAELDE 240 (294)
Q Consensus 233 g~~~~~~~ 240 (294)
|+.+.+..
T Consensus 302 Gnydqy~~ 309 (614)
T KOG0927|consen 302 GNYDQYVK 309 (614)
T ss_pred CCHHHHhh
Confidence 98887643
No 374
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-31 Score=248.58 Aligned_cols=198 Identities=26% Similarity=0.295 Sum_probs=140.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.-|.+.+.+..|++ +.+|++-++++..|-.+||+|+||+|||||||+|+.- .+...... . .+.+
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-------~v~~f~ve-----q-E~~g 142 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-------QVSGFHVE-----Q-EVRG 142 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-------CcCccCch-----h-heec
Confidence 36889999999986 6799999999999999999999999999999999851 01000000 0 0000
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcC----CCCcHHH-HHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV----EGSDPVR-RERLIELLDID---LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr 163 (294)
+..... +..+..+.....++..- .....+. ...++..++.. ..++..+||||.|.|++|||
T Consensus 143 ~~t~~~-----------~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 143 DDTEAL-----------QSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALAR 211 (582)
T ss_pred cchHHH-----------hhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHH
Confidence 000000 00001111111111110 0001122 23377788875 35678999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE-EecccHHHHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL-RRAEKLAELDE 240 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~~ 240 (294)
||..+|||||||||||+||..+..++.+.|.. ++.|+|+||||..|+..+|..|+.+++-++ .+.|..+++.+
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t----~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT----WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhh----CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999999999999999999888887765 468999999999999999999999998777 35677776644
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=1.3e-30 Score=226.25 Aligned_cols=191 Identities=17% Similarity=0.133 Sum_probs=123.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec-CCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGIS-PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL-NRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~-~~~~~~~~~~~~~ 90 (294)
.|+++|+. +|.+ . .+++|+.. +|++++|+||||||||||+++|++.+.-...+..... ......
T Consensus 5 ~i~l~nf~-~y~~---~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~------- 70 (213)
T cd03279 5 KLELKNFG-PFRE---E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA------- 70 (213)
T ss_pred EEEEECCc-CcCC---c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc-------
Confidence 58889988 6644 2 56777654 5899999999999999999999964311101111100 000000
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHH--HHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER--LIELLDID--LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
. ......+...++..- ...... .....+.+...+ .+...++. .++++.+||+||+||++|||||+
T Consensus 71 ----~--~~~~~~v~~~f~~~~-~~~~~~----r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 71 ----P--GEDTAEVSFTFQLGG-KKYRVE----RSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred ----C--CCccEEEEEEEEECC-eEEEEE----EecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 0 000001111111000 000000 000112221111 12222222 46788999999999999999998
Q ss_pred c----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 167 H----------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 167 ~----------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
. +|++|||||||++||+..+..+.+.|.++.+ .+.|||+||||++++..+||+++++++|..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6789999999999999999999999998764 488999999999999999999999999864
No 376
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=9.9e-30 Score=240.40 Aligned_cols=217 Identities=17% Similarity=0.249 Sum_probs=160.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc-cccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT-QLVC 89 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~-~~~~ 89 (294)
.+.+++++++.. ..++|+||++.+|||+||.|-=|||+|-|+++|.|...+. +|.+.++|++..... ....
T Consensus 261 ~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~-~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 261 EPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS-SGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred CcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC-CceEEECCEEccCCCHHHHH
Confidence 456888887753 1478999999999999999999999999999999966555 999999998643221 1112
Q ss_pred cCCcccccccccccccccCcccccccccHHHHh-hc---CCC--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG---VEG--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~ 160 (294)
...+.|++.+... -+.+...++..+++...+. +. +-. ......+++.+.|++. .+..+..||||.||||.
T Consensus 333 ~~Gi~~v~EDRk~-~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 333 KAGIAYVPEDRKS-EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HcCCEeCCccccc-CcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 2234455443321 1222122222222211110 00 001 1122345677788874 56789999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|||.|+.+|++|||||||.|.|.-++.+|+++|.+++++ |++||++|-+++++..+||||++|++|+++..-+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999999865 9999999999999999999999999999987655444
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=3e-30 Score=208.08 Aligned_cols=130 Identities=28% Similarity=0.384 Sum_probs=95.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc-c
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-I 110 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 110 (294)
|+||||+|++|++++|+|+||||||||+++|+|...+. .|.+.+++.+....... ..+..++++.+ .
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~-~G~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD-SGSILINGKDISDIDIE-----------ELRRRIGYVPQDP 68 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES-EEEEEETTEEGTTSHHH-----------HHHHTEEEEESSH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc-ccccccccccccccccc-----------ccccccccccccc
Confidence 68999999999999999999999999999999998886 89998887654321110 11222333322 2
Q ss_pred cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC------cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC
Q 022663 111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179 (294)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~ 179 (294)
.++...+..+. ....+...+++.+++. .++++.+||+||||||+|||||+.+|++||||||||
T Consensus 69 ~~~~~~tv~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 69 QLFPGLTVREN------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp CHHTTSBHHHH------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccc------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23333433332 1234566777777753 234459999999999999999999999999999997
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=9.1e-30 Score=224.90 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=69.8
Q ss_pred cccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663 144 LQWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT 219 (294)
Q Consensus 144 ~~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d 219 (294)
.+.++.+||||||||++|||||+ .+|+++||||||++||+..+..+++.|.++.+ +.+||++||+.+ +.++||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCC
Confidence 35678899999999999999996 36899999999999999999999999998743 778888888865 668999
Q ss_pred eEEEee
Q 022663 220 HLAYIQ 225 (294)
Q Consensus 220 ~v~~l~ 225 (294)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999986
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=228.70 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=156.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|+.|.|... ..=+..||++|++||++-|+|.||||||||+++++|++.|+ +|.|.++|.+.......
T Consensus 322 ~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~~e~le----- 393 (546)
T COG4615 322 TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVSAEQLE----- 393 (546)
T ss_pred ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCCCCCHH-----
Confidence 69999999999752 24578999999999999999999999999999999999998 99999999875332110
Q ss_pred cccccccccccccccC-cccccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC-----ccc--ccccCCHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID-----LQW--RMHKVSDGQRRRVQICM 163 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~-----~~~--~~~~LSgGqkqRv~lAr 163 (294)
+++.-+..++ ++.+++ -.++.++ ...+.++.+++.+.+. .+. ..-.||.|||+|+++.-
T Consensus 394 ------dYR~LfSavFsDyhLF~------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~ 461 (546)
T COG4615 394 ------DYRKLFSAVFSDYHLFD------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLL 461 (546)
T ss_pred ------HHHHHHHHHhhhHhhhH------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHH
Confidence 1111111010 111111 1223333 3456677888888763 122 34579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
|++-+.+|+++||=.+.-||.-|+.+++.+.-..++.|+||+.||||-... ..|||++.+++|++++..
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999999988889999999999997654 469999999999998754
No 380
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.5e-29 Score=212.35 Aligned_cols=234 Identities=15% Similarity=0.240 Sum_probs=165.2
Q ss_pred cccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC---CceEEecCCccccccc
Q 022663 11 LNSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG---RDVVQVLNRSSFHDTQ 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~---~g~i~~~~~~~~~~~~ 86 (294)
|+.|.++|++..+.... ...+++++|+++.+||+-||+|+||||||-..|.|+|...-.- .....+++.+......
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 46789999999885321 2458999999999999999999999999999999999653210 1111222221111000
Q ss_pred ccccCCcccccccccccccccCcccc---cccc-cHHHHh------------hcCCCCcHHHHHHHHHHcCCC-----cc
Q 022663 87 LVCSGDLSYLGGSWSKTVGSAGEIPL---QGDF-SAEHMI------------FGVEGSDPVRRERLIELLDID-----LQ 145 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~------------~~~~~~~~~~~~~~l~~l~l~-----~~ 145 (294)
......+ ...+.+.++.+. .+.- ...+++ +..-.+.+.+.-+++..+|+. ..
T Consensus 81 ---r~RRk~i----g~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 81 ---RERRKLV----GHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred ---HHhhhhh----ccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 0000000 011222222111 0000 011111 111123445566778888885 24
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
.+|.+|--||-|+|+||.|++.+|++||.||||+++|+.++.+++.+|.++.+..|.||+++|||+..+.++||++-+|.
T Consensus 154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 58899999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CCeEEecccHHHHHHhhh---hhhhHHHH
Q 022663 226 DGELRRAEKLAELDELRN---STNLLSVV 251 (294)
Q Consensus 226 ~G~i~~~g~~~~~~~~~~---~~~~~~~~ 251 (294)
=|+-++.++.+++.+.+. .+.++..+
T Consensus 234 CGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 234 CGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred ecccccccchhHHhcCCCCchHHHHHHhC
Confidence 999999999999887643 34444443
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=5.7e-30 Score=221.89 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=115.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++|.. .|++ ..++++++| ++++|+||||||||||+++|.-.. |.+.... ....
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-----------G~~~~~~----~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-----------GFRASKM----RQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-----------ccCHHHh----hhhh
Confidence 37788876 7865 568898887 899999999999999999997210 0000000 0001
Q ss_pred ccccccccccccc-ccCcc-ccccccc-HHHH-hhcCCCCcHH---HHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVG-SAGEI-PLQGDFS-AEHM-IFGVEGSDPV---RRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~-~~~~~~~~~~---~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
+.+..+.....-. ...+. ..+.... ...+ ..+....... ...++++.+++. .++++..||+|||||++||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~ 140 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL 140 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence 1111110000000 00000 0000000 0000 0111100000 012334445553 46678899999999999999
Q ss_pred HHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 164 GLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 164 aL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
|++. +|++++|||||+|||+.++..+.+.|.++. .+.|+|++||+. ++.++||+|++|..
T Consensus 141 al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 141 VFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 9974 589999999999999999999999999874 367999999995 56789999999974
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-28 Score=225.47 Aligned_cols=202 Identities=21% Similarity=0.303 Sum_probs=147.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|.|-+.+|+|.|++ .+++++.++|-|.-...+|||||||.||||||++|.|.+.|. .|...-+- +
T Consensus 584 PPvLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~-~GE~RKnh-----------r 649 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN-DGELRKNH-----------R 649 (807)
T ss_pred CCeeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC-cchhhccc-----------e
Confidence 468999999999976 478999999999999999999999999999999999988886 44322110 0
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcc---cccccCCHHHHHHHHHHHHHcc
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQ---WRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~LSgGqkqRv~lAraL~~ 167 (294)
-.+.++.+.... .+...-+..+++....+...+.....+-.|++..+ -.+..|||||+-||++|-.-+.
T Consensus 650 L~iG~FdQh~~E--------~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 650 LRIGWFDQHANE--------ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALG 721 (807)
T ss_pred eeeechhhhhHH--------hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcC
Confidence 012222221110 11112222222221112334455566777777532 3578999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe-cccHHHH
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR-AEKLAEL 238 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 238 (294)
.|+||||||||++||.++...+.+.|.+ +...||+||||-.++.+..-.++|+++..|-+ +|+.+++
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIne----y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINE----YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHh----ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 9999999999999999999988888875 46689999999999888877888888766533 4555554
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=4.3e-27 Score=239.57 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=96.5
Q ss_pred HHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 022663 134 ERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207 (294)
Q Consensus 134 ~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv 207 (294)
.+.++.+++. +++++.+|||||+||++||++|+.+| +++||||||+|||+..+..+++.|.++.+ .|.|||+|
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIii 889 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVI 889 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 4556677774 47889999999999999999999999 99999999999999999999999998864 58999999
Q ss_pred eCChhHHHhhhceEEEe------eCCeEEecccHHHHHHhhh
Q 022663 208 THIFDGLETWATHLAYI------QDGELRRAEKLAELDELRN 243 (294)
Q Consensus 208 sHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~ 243 (294)
|||++++. .||+|+.| ++|+++..|+++++.....
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999985 79999999 7999999999999876543
No 384
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3e-28 Score=216.46 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=111.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC-cccccccc--cccCCcccccccccccccccCcccccccccH
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR-SSFHDTQL--VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA 118 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (294)
..+++|+||||||||||+++|+|++.+...+.+...+. +....... .....+.+..+...... ......+.+.++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~-~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQ-SPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCccc-CcccccCCceEEE
Confidence 45999999999999999999999876542344444333 11100000 00001111111100000 0000000001111
Q ss_pred H-HHh------hcCC--CCcHHHHHHHHHHcCCCc----------------------ccccccCCHHHHHHHHHHHHHc-
Q 022663 119 E-HMI------FGVE--GSDPVRRERLIELLDIDL----------------------QWRMHKVSDGQRRRVQICMGLL- 166 (294)
Q Consensus 119 ~-~~~------~~~~--~~~~~~~~~~l~~l~l~~----------------------~~~~~~LSgGqkqRv~lAraL~- 166 (294)
. ++. +... .....++.++++.+++.. +.++.+||+|||||++||+||+
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 0 000 0011 112345566777777642 3578899999999999999997
Q ss_pred ---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 167 ---HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 167 ---~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
.+|+++||||||++||+..+..+++.|.++. .|.|||+|||+.+ +.+.||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~-~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEG-MFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHH-HHHhCCEEEEEE
Confidence 5789999999999999999999999999874 3789999999965 555799998765
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=7.8e-28 Score=221.38 Aligned_cols=163 Identities=23% Similarity=0.286 Sum_probs=123.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccccc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS 117 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (294)
+|..||+++++||||-|||||.++|+|.+.|+ +|. .. . -.++|-+|.+.. ...-+
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd-eg~-~~-~------------~~vSyKPQyI~~----------~~~gt 417 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD-EGS-EE-D------------LKVSYKPQYISP----------DYDGT 417 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCC-CCC-Cc-c------------ceEeecceeecC----------CCCCc
Confidence 45677899999999999999999999999998 333 10 0 012222221110 01123
Q ss_pred HHHHhhcCCC---CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH
Q 022663 118 AEHMIFGVEG---SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192 (294)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~ 192 (294)
+++++..... .+.....++.+-|+++ .++++.+|||||.|||+||.+|..+++++|||||++.||.+.|..+.+.
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 3333322111 1112234566667775 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 193 l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
|++...+.++|.++|.||+..+.-++||+++.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999998889999999999999999999999886
No 386
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.4e-28 Score=224.69 Aligned_cols=195 Identities=23% Similarity=0.286 Sum_probs=148.9
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|.|++.+|+|.|..+. .+++.++++.++.-+.++++|+||+||||++|++.|...|. .|++.+.++.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~-rgi~~~~~r~---------- 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT-RGIVGRHPRL---------- 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc-cceeeecccc----------
Confidence 46899999999997532 27999999999999999999999999999999999977765 5555433321
Q ss_pred CCcccccccccccccccCcccccccc-cHHH-HhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDF-SAEH-MIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL 165 (294)
.+.++.|. . .....-. ..-+ +.....+...+...+-+..||++ ..+.+..||||||-||++|.+.
T Consensus 428 -ri~~f~Qh---h------vd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 -RIKYFAQH---H------VDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred -eecchhHh---h------hhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh
Confidence 12222110 0 1110000 1111 11122333456677888899986 2455889999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
..+|.+|+||||||+||.++...+.+.|+. ++..||+||||.+++..+|+.+|+.++|++..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~----F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKN----FNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHh----cCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999998888888765 46789999999999999999999999999975
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=3.8e-27 Score=249.40 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=94.3
Q ss_pred HHHHHcCCC---cccccccCCHHHHHHHHHHHHHc---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 022663 135 RLIELLDID---LQWRMHKVSDGQRRRVQICMGLL---HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208 (294)
Q Consensus 135 ~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~---~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivs 208 (294)
++++.+++. +++++.+|||||+||++||++|+ .+|++|||||||+|||+..+..++++|.++.+ .|.|||+||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 466777774 47889999999999999999997 69999999999999999999999999999864 599999999
Q ss_pred CChhHHHhhhceEEEee------CCeEEecccHHHHHH
Q 022663 209 HIFDGLETWATHLAYIQ------DGELRRAEKLAELDE 240 (294)
Q Consensus 209 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 240 (294)
|+++++ ++||++++|. +|+++..|+++++..
T Consensus 870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 870 HNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999998 7999999996 789999999999865
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=9.5e-28 Score=206.87 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=73.2
Q ss_pred ccccccCCHHHHHH------HHHHHHHccCCCEEEeeCCCCCCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCChhHHHhh
Q 022663 145 QWRMHKVSDGQRRR------VQICMGLLHPFKVLLLDEITVDLDVVARM-DLLDFFKDECEQRGATIVYATHIFDGLETW 217 (294)
Q Consensus 145 ~~~~~~LSgGqkqR------v~lAraL~~~p~iLlLDEPt~gLD~~~~~-~l~~~l~~~~~~~g~tviivsHd~~~~~~~ 217 (294)
++.+.+||+||+|| ++||||++.+|+++||||||++||+..+. .+.++|.++.++.+.|||++||+++++. .
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~ 188 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-A 188 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-h
Confidence 66789999999996 78999999999999999999999999999 9999999886544789999999999775 6
Q ss_pred hceEEEeeC
Q 022663 218 ATHLAYIQD 226 (294)
Q Consensus 218 ~d~v~~l~~ 226 (294)
||+++.|++
T Consensus 189 ~d~i~~l~~ 197 (204)
T cd03240 189 ADHIYRVEK 197 (204)
T ss_pred CCEEEEEee
Confidence 999999965
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1e-27 Score=212.62 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=70.2
Q ss_pred ccccCCHHHHHHHHHHHHHccC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663 147 RMHKVSDGQRRRVQICMGLLHP----FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~~~----p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~ 222 (294)
++.+||+|||||++||++++.+ |+++||||||++||+..+..+.++|.++++ .|.+||+|||+.+++ .+||+++
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~-~~~d~i~ 229 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEEFF-SKADALV 229 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHH-hhCCeEE
Confidence 3488999999999999999864 899999999999999999999999998864 489999999997765 6899999
Q ss_pred EeeC
Q 022663 223 YIQD 226 (294)
Q Consensus 223 ~l~~ 226 (294)
+|..
T Consensus 230 ~~~~ 233 (247)
T cd03275 230 GVYR 233 (247)
T ss_pred EEEe
Confidence 9874
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.6e-26 Score=235.02 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=91.7
Q ss_pred HHHHHHcCCC---cccccccCCHHHHHHHHHHHHHcc---CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 022663 134 ERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLH---PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207 (294)
Q Consensus 134 ~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~---~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv 207 (294)
.++++.+++. +++++.+|||||+||++||++|+. +|+++||||||+|||+..+..++++|.++.+ .|.|||+|
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi 887 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVI 887 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 3456667774 477889999999999999999997 5999999999999999999999999999864 58999999
Q ss_pred eCChhHHHhhhceEEEe------eCCeEEecccHHHH
Q 022663 208 THIFDGLETWATHLAYI------QDGELRRAEKLAEL 238 (294)
Q Consensus 208 sHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 238 (294)
||+++++. .||+|++| ++|+++..|+++++
T Consensus 888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999885 69999999 79999999998764
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=3.4e-27 Score=202.50 Aligned_cols=174 Identities=19% Similarity=0.177 Sum_probs=113.4
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcc-
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI- 110 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 110 (294)
++++++++.+| +.+|+||||||||||+.+|....... ......+.... . +...+.. ...+....+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~--~~~~~r~~~~~---~------~i~~~~~-~~~i~~~~~~~ 78 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK--ASDTNRGSSLK---D------LIKDGES-SAKITVTLKNQ 78 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC--cccccccccHH---H------HhhCCCC-eEEEEEEEEcC
Confidence 57888999887 88999999999999999997321111 00000011000 0 0000000 0001000000
Q ss_pred cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHH----ccCCCEEEeeCCCCCCCHHHH
Q 022663 111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL----LHPFKVLLLDEITVDLDVVAR 186 (294)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL----~~~p~iLlLDEPt~gLD~~~~ 186 (294)
.... + .........+.++++. .-..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+
T Consensus 79 ~~~~-----~---~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 79 GLDA-----N---PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred CccC-----C---cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 0000 0 0000112334455555 2235778999999999999999999 689999999999999999999
Q ss_pred HHHHHHHHHHHHh--cCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 187 MDLLDFFKDECEQ--RGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 187 ~~l~~~l~~~~~~--~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
..+.++|.+++++ .+.|||++||+++++..+ |+|.+|..++
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 9999999987654 236899999999999986 9999998753
No 392
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=222.22 Aligned_cols=187 Identities=23% Similarity=0.308 Sum_probs=137.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
...|+++||+..-++ +.+.+++++|+|++||.+.|.||||||||||+|+|+|+-+. ++|.+......
T Consensus 390 ~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-g~G~I~~P~~~---------- 456 (604)
T COG4178 390 DHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMPADS---------- 456 (604)
T ss_pred cceeEEeeeeEECCC--CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-CCCceecCCCC----------
Confidence 468999999999876 35799999999999999999999999999999999998765 47776543110
Q ss_pred CCcccccccccccccccCcccccccccH-HHHhhcCCC--CcHHHHHHHHHHcCCC-----c---ccccccCCHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVEG--SDPVRRERLIELLDID-----L---QWRMHKVSDGQRRRV 159 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~l~~l~l~-----~---~~~~~~LSgGqkqRv 159 (294)
.+.+.+ +-|.++.-+- +.+.+.... ...+...+++..+++. + ++--..||+|||||+
T Consensus 457 -~~lflp-----------Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl 524 (604)
T COG4178 457 -ALLFLP-----------QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL 524 (604)
T ss_pred -ceEEec-----------CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH
Confidence 112222 2121111122 222232211 3445566677777763 1 122346999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
++||.|+++|++++|||-|++||+.+...+++++++.+ .+.|||-|+|.... ..+.++.+.+.
T Consensus 525 afARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl-~~~h~~~l~l~ 587 (604)
T COG4178 525 AFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTL-WNFHSRQLELL 587 (604)
T ss_pred HHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhh-HHHHhhheeec
Confidence 99999999999999999999999999999999998755 47999999999875 44666665554
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.93 E-value=7.2e-26 Score=194.59 Aligned_cols=146 Identities=21% Similarity=0.300 Sum_probs=106.6
Q ss_pred eeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------CCcccCCCceEEecCCcccccccccccCCcccccccccc
Q 022663 32 FYDFNLGISPGS-RCLLVGANGSGKTTLLKILA--------GKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSK 102 (294)
Q Consensus 32 L~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~--------G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (294)
+-++||++.+|+ +++|+||||||||||+|+|+ |...|..... .+.++.+.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------------------~~~~~~~~--- 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------------------SLPVFENI--- 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------------------cCcCccEE---
Confidence 458999999996 79999999999999999998 4322210000 00000000
Q ss_pred cccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCC
Q 022663 103 TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182 (294)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD 182 (294)
+.. ++ ..+ ..+...+.+|+||+|++.|+++ +.+|+++|+|||++|||
T Consensus 76 ----------~~~-------lg----~~~-----------~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 76 ----------FAD-------IG----DEQ-----------SIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred ----------EEe-------cC----chh-----------hhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 000 00 000 1234567899999999999988 48999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663 183 VVARMDLLD-FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233 (294)
Q Consensus 183 ~~~~~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g 233 (294)
+..+..+.. ++.++. +.+.++|++||+. .+..+||+++.|++|++..++
T Consensus 123 ~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELL-ERGALVIATTHYG-ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHH-hcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEec
Confidence 999999865 566654 4589999999995 566899999999999998763
No 394
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=7.2e-25 Score=204.17 Aligned_cols=216 Identities=17% Similarity=0.223 Sum_probs=164.4
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc-c-ccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF-H-DTQLV 88 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~-~-~~~~~ 88 (294)
.+.|++++|+..-.. +.+.+++|||+|.+|||+||.|-.|-|-+.|+.+|+|+.++. .|.+.++|.+.. . .....
T Consensus 255 ~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 255 EVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccCCHHHH
Confidence 457999999997543 246799999999999999999999999999999999998776 599999998741 1 11111
Q ss_pred ccCCcccccccccccccccCcccccccccH-HHHhhcCC--------C-CcH----HHHHHHHHHcCCC---cccccccC
Q 022663 89 CSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVE--------G-SDP----VRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~-~~~----~~~~~~l~~l~l~---~~~~~~~L 151 (294)
....+.+++.+... .+ +...++. +|..+... . .+. ....++++.|++. ...+...|
T Consensus 332 r~~G~~~VPedR~~-~G------lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~L 404 (501)
T COG3845 332 RRLGLAYVPEDRHG-HG------LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSL 404 (501)
T ss_pred HhcCCccCChhhcc-Cc------cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhc
Confidence 11233444333211 11 1122222 22221110 0 111 2345778888874 45678899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||.+||+-+||-|..+|++||+.+||.|||..+.+.+.+.|.+.. +.|++|+++|-|++++..+||||.+|.+|+++.
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999999999999999999999999999999999999999999876 469999999999999999999999999999998
Q ss_pred cccHHH
Q 022663 232 AEKLAE 237 (294)
Q Consensus 232 ~g~~~~ 237 (294)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 877765
No 395
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.4e-25 Score=228.13 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=146.9
Q ss_pred CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCcccccccccccccc
Q 022663 28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGS 106 (294)
Q Consensus 28 ~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
.+.+|+||+=-+.||-.+||+|+|||||||||++|+|-..-. -.|.+.++|.+..+ +.+.+..++
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--------------~tF~R~~GY 868 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--------------ETFARVSGY 868 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--------------hhhccccce
Confidence 467999999999999999999999999999999999943210 14666777764321 122334455
Q ss_pred cCccc-ccccccHHHH-hh----cCC-CCc---H-HHHHHHHHHcCCC--cccccc----cCCHHHHHHHHHHHHHccCC
Q 022663 107 AGEIP-LQGDFSAEHM-IF----GVE-GSD---P-VRRERLIELLDID--LQWRMH----KVSDGQRRRVQICMGLLHPF 169 (294)
Q Consensus 107 ~~~~~-~~~~~~~~~~-~~----~~~-~~~---~-~~~~~~l~~l~l~--~~~~~~----~LSgGqkqRv~lAraL~~~p 169 (294)
+.+.. ..+..|++|- .+ ... ..+ + +.++++++.++++ .+.-++ -||..||+|+.||--|+.+|
T Consensus 869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P 948 (1391)
T KOG0065|consen 869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANP 948 (1391)
T ss_pred eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCC
Confidence 54422 2355565543 22 111 111 2 3467889999886 344444 49999999999999999999
Q ss_pred -CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeC-CeEEecccHHH
Q 022663 170 -KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQD-GELRRAEKLAE 237 (294)
Q Consensus 170 -~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 237 (294)
.||+|||||||||..+...+++++++++. .|.||+++-|.+. .+.+..|++++|++ |+.++.|+..+
T Consensus 949 ~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 949 SSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999999986 6999999999985 35566899999986 67888887643
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-25 Score=204.74 Aligned_cols=210 Identities=27% Similarity=0.314 Sum_probs=142.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC--CcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G--~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
-|.++|.+.+-.+ +.++.+.|+.|-.|..+|||||||-||||||+.|+. +..|+ ...+.++.+........
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~--- 336 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTS--- 336 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcH---
Confidence 5888998888755 578999999999999999999999999999999985 22233 22222222221100000
Q ss_pred CCcc-ccccccccccccc-------CcccccccccHHHHh----h---cC-CCCcHHHHHHHHHHcCCC---cccccccC
Q 022663 91 GDLS-YLGGSWSKTVGSA-------GEIPLQGDFSAEHMI----F---GV-EGSDPVRRERLIELLDID---LQWRMHKV 151 (294)
Q Consensus 91 ~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~---~~-~~~~~~~~~~~l~~l~l~---~~~~~~~L 151 (294)
.+. .+.... ...... .++ ..+..++.+.+ . .. ......+..+++..|+++ .+++...+
T Consensus 337 -Ai~tvl~aD~-kRl~lLeee~~L~~q~-e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 337 -AIDTVLKADK-KRLALLEEEAKLMSQI-EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred -HHHHHHHhhH-HHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 000 000000 000000 000 01222221111 0 00 011234567788888886 36777899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
|||.|.||+|||||...|-+|+|||||++||.....++-++|..| .+|++|||||-.++..+|..|+.|++.++.+
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 999999999999999999999999999999999998888888765 5699999999999999999999999988754
Q ss_pred -cccHH
Q 022663 232 -AEKLA 236 (294)
Q Consensus 232 -~g~~~ 236 (294)
.|.+.
T Consensus 490 YrGNY~ 495 (807)
T KOG0066|consen 490 YRGNYT 495 (807)
T ss_pred hcchHH
Confidence 45544
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=199.42 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=129.9
Q ss_pred ceEEEcCCCCCCCceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC-c-c
Q 022663 18 GMQFSYEGNDKPPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD-L-S 94 (294)
Q Consensus 18 ~ls~~y~~~~~~~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~-~ 94 (294)
++..+|+.+ -++=..+ ...+|.++||+||||-||||-+|+|+|.+.|. -|.. .+.+.+......+++. + .
T Consensus 79 e~vHRYg~N----gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~--~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVN----GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRY--EDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCC----ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCC--CCCCCHHHHHHHhhhhHHHH
Confidence 456788642 1222333 45689999999999999999999999988875 3321 1111111000000000 0 0
Q ss_pred cccccccccccc---cCcccccccc---cHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663 95 YLGGSWSKTVGS---AGEIPLQGDF---SAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 95 ~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
|+.......+.. .+++...+.. +..+++-.. ...-..+++.+.|++. +++.+++|||||.||++||.+++
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~--de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~ 229 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV--DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALL 229 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhh--hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHh
Confidence 000000000000 0000000000 111111110 0112456788888886 68999999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
++++++++||||+-||...|-...+.++++++. +++||+|.||+..+.-++|-|.++.
T Consensus 230 rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 230 RDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999865 8999999999999999999998886
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=3e-24 Score=186.16 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=72.4
Q ss_pred ccccccCCHHHHHHHHHHHHH----ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCChhHHHhhhc
Q 022663 145 QWRMHKVSDGQRRRVQICMGL----LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG-ATIVYATHIFDGLETWAT 219 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL----~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g-~tviivsHd~~~~~~~~d 219 (294)
+..+.+||+|||||+.+|++| +.+|+++|+||||++||+..+..+++.|.++.++.| .|+|++||++.....+||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 456789999999999877554 589999999999999999999999999998865434 589999999988888876
Q ss_pred --eEEEeeCCe
Q 022663 220 --HLAYIQDGE 228 (294)
Q Consensus 220 --~v~~l~~G~ 228 (294)
+|++|.+|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888886
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=190.92 Aligned_cols=190 Identities=21% Similarity=0.276 Sum_probs=134.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|++++|+..-+.+ +..+++|+||+|++|+-+.|.||||||||+|||+++|+-+. .+|.+....... ..
T Consensus 432 n~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~--------~~ 501 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGG--------PK 501 (659)
T ss_pred ceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCC--------CC
Confidence 479999999998764 45688999999999999999999999999999999998654 377765432211 01
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcC-------CCCcHHHHHHHHHHcCCC--------cc-----cccccC
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV-------EGSDPVRRERLIELLDID--------LQ-----WRMHKV 151 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~l~--------~~-----~~~~~L 151 (294)
++.+++|...-..+.. .+++++.. ...+.++..+.++.+++. .+ .-...|
T Consensus 502 ~lfflPQrPYmt~GTL----------RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvL 571 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLGTL----------RDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVL 571 (659)
T ss_pred ceEEecCCCCccccch----------hheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhc
Confidence 2333333211111111 12222221 112334455555554431 12 123579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
|+||+||+++||.+.++|++-||||-|+++|.+....+++.++ +.|+|.|-|+|...+ .++-|.++-|+.
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r----~~giT~iSVgHRkSL-~kfHd~~L~~~g 641 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR----EMGITFISVGHRKSL-WKFHDYVLRMDG 641 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH----HcCCeEEEeccHHHH-HhhhhEEEEecC
Confidence 9999999999999999999999999999999988777776554 569999999999885 457798888875
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.89 E-value=1.6e-22 Score=170.69 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 151 VSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 151 LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
||+||+||++|||+++ .+|+++|+|||+++||+..+..+.+.|.++.+ .|.|+|++||+.+.+. .+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999998864 4789999999998775 7999999875
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=185.16 Aligned_cols=181 Identities=22% Similarity=0.324 Sum_probs=133.5
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--------ccCCCceEEecCCcccccccccccCCcccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--------MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW 100 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--------~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (294)
..+|+|+||+|++|++++|+|+|||||||||++|+|.. .|+ +|.+.+...... ...+..
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~-sg~v~vp~nt~~-----------a~iPge- 462 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD-SGKVEVPKNTVS-----------ALIPGE- 462 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCC-CCceeccccchh-----------hccCcc-
Confidence 35899999999999999999999999999999999843 232 344332111100 000000
Q ss_pred cccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC----cccccccCCHHHHHHHHHHHHHccCCCEEEeeC
Q 022663 101 SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE 176 (294)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE 176 (294)
.-+.++..+..+.++.. ..+.....+++...++. ..+++++||.|||.|+.||++++.+|.+++.||
T Consensus 463 --------~Ep~f~~~tilehl~s~-tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 463 --------YEPEFGEVTILEHLRSK-TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred --------cccccCchhHHHHHhhc-cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 00111111222212211 12323345677777774 256789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEEe
Q 022663 177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELRR 231 (294)
Q Consensus 177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~ 231 (294)
-.|+||+.+...+..-|.+++++.|.|++++||+.++...+ -|+++.+.-|+...
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 99999999999999999999999999999999999999998 69999988776543
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.88 E-value=2e-22 Score=175.79 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=107.5
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+.+|+++++.++++++|.||||+|||||+++|+=.......|. +.+... .
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~---------------------~vpa~~-~------ 68 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC---------------------FVPCDS-A------ 68 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC---------------------CcCccc-E------
Confidence 468999999999999999999999999999999972100000000 000000 0
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHH--ccCCCEEEeeCC---CCCCCH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL--LHPFKVLLLDEI---TVDLDV 183 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL--~~~p~iLlLDEP---t~gLD~ 183 (294)
..+ ..++++..+++. +.....+|.|+++++.+++++ +.+|+++||||| |++||+
T Consensus 69 ~~~--------------------~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~ 127 (222)
T cd03285 69 DIP--------------------IVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDG 127 (222)
T ss_pred EEe--------------------ccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHH
Confidence 000 011122223322 122567999999999999999 899999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
...... .+..+.++.+.++|++||+ .++.++||++..+++|++.....
T Consensus 128 ~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 128 FGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 887543 3333433347899999996 66788999999999999876543
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.88 E-value=3.5e-22 Score=166.10 Aligned_cols=75 Identities=25% Similarity=0.336 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 150 KVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
+||+||+||++||++|+. +|+++|+|||++|+|+..+..+.+.+.++..+ +.++|++||+.+++. .+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 499999999999999986 78999999999999999999999999988765 889999999999876 589999986
Q ss_pred C
Q 022663 226 D 226 (294)
Q Consensus 226 ~ 226 (294)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.5e-22 Score=177.79 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=68.8
Q ss_pred ccCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 149 HKVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 149 ~~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
..|||||+||++||++++. +|+++||||||++||+..+..+.+.|.++.+ +.|+|++||++.. ..+||+++.|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~-~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV-AAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH-HHhcCcEEEE
Confidence 3599999999999987654 9999999999999999999999999998753 6899999999985 4689999999
Q ss_pred eCCe
Q 022663 225 QDGE 228 (294)
Q Consensus 225 ~~G~ 228 (294)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 9864
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.87 E-value=1e-21 Score=169.00 Aligned_cols=155 Identities=14% Similarity=0.198 Sum_probs=101.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccc
Q 022663 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL 112 (294)
Q Consensus 33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (294)
-..++++.+|++++|+||||||||||||+|++.......|.... .. ...+++..+ .
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~---------------------~~-~~~i~~~dq--i 75 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP---------------------AE-SASIPLVDR--I 75 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc---------------------cc-ccccCCcCE--E
Confidence 34566777999999999999999999999996332111111100 00 000000000 0
Q ss_pred cccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH
Q 022663 113 QGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192 (294)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~ 192 (294)
+..+... + ......+.+|.+++| +..+.+++.+|+++|+||||+|||+..+..+...
T Consensus 76 ~~~~~~~---------d-------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 76 FTRIGAE---------D-------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred EEEecCc---------c-------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 0000000 0 112345567777776 6666788899999999999999999988887654
Q ss_pred HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 193 l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
+.+...+.+.++|++||+.+++. .++++..+.++++...+..
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecC
Confidence 33333456899999999988766 6889999999998877654
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=1.2e-20 Score=200.44 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=93.4
Q ss_pred HHHHcCCC---cccccccCCHHHHHHHHHHHHHccC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 022663 136 LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP---FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209 (294)
Q Consensus 136 ~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~---p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsH 209 (294)
.+..+|+. +.++..+|||||.||+-||.-|..+ +.++||||||.||++...+.+++.|.++.. .|.|||+|+|
T Consensus 1682 ~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH 1760 (1809)
T PRK00635 1682 ALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSVIYIDH 1760 (1809)
T ss_pred HHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 44555653 6888999999999999999999875 799999999999999999999999999874 6999999999
Q ss_pred ChhHHHhhhceEEEee------CCeEEecccHHHHHHhhh
Q 022663 210 IFDGLETWATHLAYIQ------DGELRRAEKLAELDELRN 243 (294)
Q Consensus 210 d~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~ 243 (294)
|++.+.. ||+|+-|- .|+|++.|+|+++.+.+.
T Consensus 1761 ~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1761 DPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred CHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 9998876 99999995 478999999999976543
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.86 E-value=4e-21 Score=179.77 Aligned_cols=190 Identities=21% Similarity=0.297 Sum_probs=127.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
-|.++|+-.--+. ...++..++|+|++|-.+.|+||||||||+|+|+|.|+-+.. .|...... ...
T Consensus 481 gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy-~g~L~~P~-----------~~~ 546 (728)
T KOG0064|consen 481 GIILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY-NGLLSIPR-----------PNN 546 (728)
T ss_pred ceEEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc-CCeeecCC-----------Ccc
Confidence 4788888887765 356889999999999999999999999999999999987553 55443221 122
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC----------c-ccccccCCHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID----------L-QWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~-~~~~~~LSgGqkqRv~l 161 (294)
+.|.+|...-..+...+..++++. .+++.. .+........+++.+.++ . ..--..||||||||+++
T Consensus 547 mFYIPQRPYms~gtlRDQIIYPdS-~e~~~~--kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 547 IFYIPQRPYMSGGTLRDQIIYPDS-SEQMKR--KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred eEeccCCCccCcCcccceeecCCc-HHHHHh--cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 344443221112222111223332 222211 122233344455444432 1 01123699999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
||.+.++|++-+|||-||+..++....+++..+ ..|.++|-|||.+.... +-.+++-.
T Consensus 624 ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrpslwk-~h~~ll~~ 681 (728)
T KOG0064|consen 624 ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPSLWK-YHTHLLEF 681 (728)
T ss_pred HHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCccHHH-HHHHHHhc
Confidence 999999999999999999999988888887665 46999999999998664 45555554
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.84 E-value=2.7e-20 Score=159.80 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=45.8
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHHhh--hceEEEe
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLD-FFKDECEQRGATIVYATHIFDGLETW--ATHLAYI 224 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~--~d~v~~l 224 (294)
.+|+++|+||||+|+|+..+..+.. ++..+. +.+.++|++||+++++... .++|-.+
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~-~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK-NKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH-HCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 5999999999999999999987754 676665 4589999999999988765 4444443
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=9e-20 Score=178.18 Aligned_cols=97 Identities=22% Similarity=0.325 Sum_probs=88.2
Q ss_pred cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 144 LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 144 ~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
+.++..+|||||.|||-||.-|.... -++||||||+||-..-.+++++.|.++.. .|-|||+|.|+++.+. .||+
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk-~AD~ 893 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIK-TADW 893 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceEe-ecCE
Confidence 67888999999999999999998877 99999999999999999999999999975 5999999999999765 6999
Q ss_pred EEEee------CCeEEecccHHHHHHhh
Q 022663 221 LAYIQ------DGELRRAEKLAELDELR 242 (294)
Q Consensus 221 v~~l~------~G~i~~~g~~~~~~~~~ 242 (294)
|+-|- .|+|++.|+|+++.+..
T Consensus 894 IIDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 894 IIDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 99884 57999999999998743
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.84 E-value=3e-20 Score=159.94 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+.+|++|++.+|++++|+||||+|||||+|+|+++......|. +.+.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~---------------------~vpa---------- 64 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC---------------------FVPA---------- 64 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---------------------Ccch----------
Confidence 478999999999999999999999999999999998532110000 0000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~ 186 (294)
....++.. +.+...++.. ..+..+.+|+|++|+ ..+.+++.+|+++|||||++|+|+...
T Consensus 65 ---~~~~l~~~--------------d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 65 ---EYATLPIF--------------NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred ---hhcCccCh--------------hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 00000100 0111111211 245567899999975 555668899999999999999999776
Q ss_pred HHHHH-HHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663 187 MDLLD-FFKDECEQRGATIVYATHIFDGLETWAT 219 (294)
Q Consensus 187 ~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~~d 219 (294)
..+.. .+..+. +.+.++|++||+.+++...++
T Consensus 127 ~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 127 FAISLAILECLI-KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHHHHH-hcCCEEEEECChHHHHHHhhc
Confidence 66544 455544 458999999999999887653
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=4.7e-20 Score=188.00 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=88.3
Q ss_pred cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663 144 LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL 221 (294)
Q Consensus 144 ~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v 221 (294)
+++.+.+|||||+|||+||++|+.+| ++|||||||+|||+..+..++++|+++.+ .|.|||+|+||++++. +||+|
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i~-~aD~v 558 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETIR-AADYV 558 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHh-hCCEE
Confidence 47889999999999999999999986 89999999999999999999999999865 5999999999999886 89999
Q ss_pred EEe------eCCeEEecccHHHHHH
Q 022663 222 AYI------QDGELRRAEKLAELDE 240 (294)
Q Consensus 222 ~~l------~~G~i~~~g~~~~~~~ 240 (294)
++| ++|+|+..|+++++..
T Consensus 559 i~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 559 IDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEecccccCCCCEEeeccCHHHHhc
Confidence 999 8999999999988754
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.82 E-value=5.3e-20 Score=187.92 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=91.9
Q ss_pred HHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
++.+++. +++++.+|||||+|||+||++|+.+| ++|||||||+|||+..+..++++|+++. +.|.|||+|+||+
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence 3445553 57889999999999999999999997 9999999999999999999999999986 4699999999999
Q ss_pred hHHHhhhceEEEe------eCCeEEecccHHHHHH
Q 022663 212 DGLETWATHLAYI------QDGELRRAEKLAELDE 240 (294)
Q Consensus 212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 240 (294)
+++. .||+|++| ++|+++..|+++++..
T Consensus 552 ~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9986 69999999 9999999999998754
No 413
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=9.6e-20 Score=185.97 Aligned_cols=200 Identities=23% Similarity=0.259 Sum_probs=149.4
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCcccccccccccCCcccccccccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGS 106 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
..+|+|+|.-+++|+.+.++||-||||||||++++|...- .+.|.+.++|.+...... .....|.++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~------- 197 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQ------- 197 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccc-------
Confidence 4699999999999999999999999999999999995421 234578888875422111 1223333221
Q ss_pred cCcccccccccHHHHh-h--c-------CCCC-cHH----HHHHHHHHcCCC--c-----ccccccCCHHHHHHHHHHHH
Q 022663 107 AGEIPLQGDFSAEHMI-F--G-------VEGS-DPV----RRERLIELLDID--L-----QWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~--~-------~~~~-~~~----~~~~~l~~l~l~--~-----~~~~~~LSgGqkqRv~lAra 164 (294)
...++.+|+++.+ + . .... +.+ ..+.+++.+|++ . +...+-.|||||+||.+|-+
T Consensus 198 ---DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~ 274 (1391)
T KOG0065|consen 198 ---DVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEM 274 (1391)
T ss_pred ---ccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeee
Confidence 1123344433321 1 0 0111 111 234678888885 2 34556799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
++.+|+++.+||+|.|||..+.-++.+.|+.+++..+.|++++-|.. +++..+.|.|++|.+|++++.|+.++....
T Consensus 275 ~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~y 352 (1391)
T KOG0065|consen 275 LVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPY 352 (1391)
T ss_pred eecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHH
Confidence 99999999999999999999999999999999988888988888875 467778999999999999999999887654
No 414
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.79 E-value=7.8e-19 Score=161.06 Aligned_cols=180 Identities=24% Similarity=0.313 Sum_probs=128.4
Q ss_pred EEcCCCCCCCceeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663 21 FSYEGNDKPPLFYDFNLGISPGS-----RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95 (294)
Q Consensus 21 ~~y~~~~~~~iL~~vsl~i~~Ge-----~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 95 (294)
++|++ .+..+.++.|.|..|+ ++..+|.||.|||||+++++|.+.|+..+.+-... +++
T Consensus 343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln--------------VSy 406 (592)
T KOG0063|consen 343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN--------------VSY 406 (592)
T ss_pred eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc--------------eec
Confidence 34654 2446789999999885 78999999999999999999988887555443221 111
Q ss_pred ccccccccccccCcccccccccHHHHhhcC---CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC
Q 022663 96 LGGSWSKTVGSAGEIPLQGDFSAEHMIFGV---EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
-++.+... ..-++.+++... ...+..-..++++-|.++ .++.+..|||||+|||+||.+|-..++
T Consensus 407 kpqkispK----------~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 407 KPQKISPK----------REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred cccccCcc----------ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 11111100 001112211100 001223344555555554 477888999999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
+++.|||.+-||.+.|...-..+++..-+.++|-.+|.||.-.+.-++|||++.+.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999999998888888887666689999999999888889999988763
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.2e-18 Score=154.81 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=66.9
Q ss_pred cccCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 148 MHKVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
...+|+||+|+++||++|+ .+|+++||||||++||+..+..+++.|.++ + .+++++|+.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence 4458999999999999985 799999999999999999999999988753 3 5777888878888888
Q ss_pred ---ceEEEeeCCeE
Q 022663 219 ---THLAYIQDGEL 229 (294)
Q Consensus 219 ---d~v~~l~~G~i 229 (294)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.77 E-value=1.1e-18 Score=151.72 Aligned_cols=153 Identities=22% Similarity=0.242 Sum_probs=94.2
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+.+|++|++.+ ++++|+||||||||||||+|++.......|... +.. ...+++..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~v---------------------p~~-~~~i~~~~ 74 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFV---------------------PAS-KAEIGVVD 74 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCee---------------------ccc-cceeccee
Confidence 4588999999987 999999999999999999998743221111100 000 00000000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHH----HHHHHHHH--ccCCCEEEeeCC---CC
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRR----RVQICMGL--LHPFKVLLLDEI---TV 179 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkq----Rv~lAraL--~~~p~iLlLDEP---t~ 179 (294)
+ ++..++. ..++|.|+.+ ++.|++++ +.+|+++||||| |+
T Consensus 75 ~--i~~~~~~-----------------------------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 75 R--IFTRIGA-----------------------------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred e--EeccCCc-----------------------------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 0 0111100 1234444443 33455555 579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 180 DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 180 gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|.... ...++..+.+..+.++|++||+.+ +..++|++..+.+|++...+..+++
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 8998653 223333333323789999999975 5668998888888888766555444
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.75 E-value=1.1e-18 Score=148.26 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=58.9
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL-DFFKDECEQRGATIVYATHIFDGLETWATHLAY 223 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~-~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~ 223 (294)
++..+++|+|++|...+++ .+.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||+.+ +.++|++.--
T Consensus 56 ~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~~ 133 (185)
T smart00534 56 AQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHPG 133 (185)
T ss_pred hccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCcc
Confidence 3457789998887444443 24599999999999999999887765 4455554324789999999996 5667875433
Q ss_pred eeCCe
Q 022663 224 IQDGE 228 (294)
Q Consensus 224 l~~G~ 228 (294)
+.+++
T Consensus 134 v~~~~ 138 (185)
T smart00534 134 VRNLH 138 (185)
T ss_pred ceEEE
Confidence 44443
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=1.1e-15 Score=132.59 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHh--cCcEEEEEeCChhHHHhhh
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL-LDFFKDECEQ--RGATIVYATHIFDGLETWA 218 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l-~~~l~~~~~~--~g~tviivsHd~~~~~~~~ 218 (294)
.-+.||+++|++++.+|.++|||||++|+|+.....+ ..+++.+.+. .+.++|++||+.+++....
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 3567999999999999999999999999999765444 5677776543 1348999999999887654
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.67 E-value=6.6e-16 Score=134.34 Aligned_cols=74 Identities=27% Similarity=0.365 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 149 HKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 149 ~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
..||||||.+++||..|+ .+++++|||||.++||...+..+.++|.++. .+.-+|++||+...+. .||+.+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~--~~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS--KQSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT--TTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc-cccccccc
Confidence 399999999999997764 5779999999999999999999999999864 2578999999988665 57887655
Q ss_pred e
Q 022663 225 Q 225 (294)
Q Consensus 225 ~ 225 (294)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.67 E-value=8.1e-17 Score=162.55 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=90.6
Q ss_pred eeeEEEeCC-CEEEEECCCCCcHHHHHHHHhCCc-ccCCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663 34 DFNLGISPG-SRCLLVGANGSGKTTLLKILAGKH-MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111 (294)
Q Consensus 34 ~vsl~i~~G-e~~~liG~NGsGKSTLlk~i~G~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (294)
.+|+++..+ ++++|+||||+|||||||+|+|.. .+. .|.....+. ...+ +
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq-~G~~Vpa~~---------------------~~~~------~ 364 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ-SGIPIPANE---------------------HSEI------P 364 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH-hCCCccCCc---------------------cccc------c
Confidence 378999887 899999999999999999999862 222 221000000 0000 0
Q ss_pred ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH-
Q 022663 112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL- 190 (294)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~- 190 (294)
++. ++.... . +. +. .....++||+|+++++.|++++ .+|.++|||||++|+|+.....+.
T Consensus 365 ~~d-----~i~~~i-~-~~---~s--------i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ 425 (771)
T TIGR01069 365 YFE-----EIFADI-G-DE---QS--------IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAI 425 (771)
T ss_pred chh-----heeeec-C-hH---hH--------HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHH
Confidence 000 000000 0 00 11 1234678999999999998876 889999999999999999999985
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 191 DFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 191 ~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
.++..+ .+.|.++|++||+.++..
T Consensus 426 aiLe~l-~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 426 SILEYL-LKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHH-HhcCCEEEEECChHHHHH
Confidence 556555 456899999999988643
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.65 E-value=1.4e-15 Score=136.02 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=84.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHh
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI 122 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (294)
.-++|+||||||||||+++|+|++.+. .|.+.++|.+..... .. .++...+..+++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v~~~d------~~----~ei~~~~~~~~q~~~~~-------- 172 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKVGIVD------ER----SEIAGCVNGVPQHDVGI-------- 172 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEeecch------hH----HHHHHHhcccccccccc--------
Confidence 578999999999999999999998876 888888776532100 00 00000011111100000
Q ss_pred hcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 022663 123 FGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202 (294)
Q Consensus 123 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~ 202 (294)
+..-|.+=.|.....+.+.+.+|++||+|||++ ...+..++..+ + .|.
T Consensus 173 ------------------------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~ 220 (270)
T TIGR02858 173 ------------------------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGV 220 (270)
T ss_pred ------------------------cccccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCC
Confidence 000011111111223344447999999999974 23344444443 3 489
Q ss_pred EEEEEeCChhH--H-----------HhhhceEEEeeCCeEEecccHHHH
Q 022663 203 TIVYATHIFDG--L-----------ETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 203 tviivsHd~~~--~-----------~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+||++||+... + ..++||+++|++|+ ..|.++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 99999997655 4 35689999999876 55665544
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=4.8e-15 Score=129.11 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC-cccCCCceEEecCCcccccccccccCCccccccccccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK-HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA 107 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
..+.+|++|.+.+|++++|+||||+|||||+++|++. +.+. .|...+.... .+.++.+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~-~G~~v~a~~~-----------~~~~~~~--------- 76 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ-IGSFVPASSA-----------TLSIFDS--------- 76 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh-CCCEEEcCce-----------EEeccce---------
Confidence 4688999999999999999999999999999999993 3333 4443221100 0111100
Q ss_pred CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH--HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHH
Q 022663 108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD--GQRRRVQICMGLLHPFKVLLLDEITVDLDVVA 185 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg--GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~ 185 (294)
++..+... +.....+|. .|-+++.-+.--+.+|.++|||||.+|.|+..
T Consensus 77 ----i~~~~~~~-------------------------d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 77 ----VLTRMGAS-------------------------DSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred ----EEEEecCc-------------------------cccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 00000000 000112222 23444444444567899999999988888766
Q ss_pred HHHH-HHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 186 RMDL-LDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 186 ~~~l-~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
...+ ...+..+.+..+.++|++||+.++..
T Consensus 128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 128 GIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 6664 45555555434789999999998764
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.62 E-value=2.9e-15 Score=151.65 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=64.9
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l 224 (294)
...+++|+||+|++.|++++ .+|.++|||||++|+|+.....+...+.+...+.|.++|++||+.++....+++..++
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE
Confidence 45778999999999999998 8999999999999999999988865443434456899999999999888777765543
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=140.22 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=81.4
Q ss_pred HHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663 133 RERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210 (294)
Q Consensus 133 ~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd 210 (294)
..++.+.+.+. +++.+.+||||+-||.+||.+.++..++.++|||.+.||...+......|+.+.. -..-||+|.||
T Consensus 194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHD 272 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEHD 272 (592)
T ss_pred HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEee
Confidence 34566666654 5788999999999999999999999999999999999999999999999998875 36789999999
Q ss_pred hhHHHhhhceEEEee
Q 022663 211 FDGLETWATHLAYIQ 225 (294)
Q Consensus 211 ~~~~~~~~d~v~~l~ 225 (294)
+..+.-+.|-+.++.
T Consensus 273 LsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 273 LSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhcceeEEe
Confidence 999999999998886
No 425
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=8.7e-15 Score=153.49 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=76.3
Q ss_pred ccccccCCHHHHHHHHHHHHHcc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663 145 QWRMHKVSDGQRRRVQICMGLLH----------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL 214 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~~----------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~ 214 (294)
++++..|||||++||+||+||+. +|++|||||||++||+.++..+++.|.++.. .|.+|+||||++++.
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence 46789999999999999999985 7999999999999999999999999999865 689999999999999
Q ss_pred HhhhceEEEeeCC
Q 022663 215 ETWATHLAYIQDG 227 (294)
Q Consensus 215 ~~~~d~v~~l~~G 227 (294)
..+||+|+|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
No 426
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=6.8e-14 Score=121.54 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=89.2
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+-+|++|++.+|++++|+||||+|||||++++++.......|.... .. ...+..+.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vp-----a~------~~~i~~~~----------- 74 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVP-----AK------SMRLSLVD----------- 74 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccC-----cc------ccEecccc-----------
Confidence 468899999999999999999999999999999987432211111000 00 00000000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH--HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD--GQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg--GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~ 186 (294)
.++..+... +.....+|. .|-+++.-....+.+|.++|||||++|+|+...
T Consensus 75 --~i~~~~~~~-------------------------d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 75 --RIFTRIGAR-------------------------DDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred --EEEEecCcc-------------------------cccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 000000000 000011222 344455444445689999999999999999999
Q ss_pred HHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 187 MDLLDF-FKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 187 ~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
..+... +..+.+..+.++|++||+.+++..++
T Consensus 128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 888888 55554333899999999999988776
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.55 E-value=1.1e-14 Score=143.28 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHHccC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 150 KVSDGQRRRVQICMGLLHP----FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~----p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
.|||||+||++||++++.. |++|||||||+|||+..+..+.+.|.++.+ +.+||+|||++..+. +||++++|+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEEE
Confidence 5899999999999999985 699999999999999999999999998753 799999999999875 899999999
Q ss_pred CCe
Q 022663 226 DGE 228 (294)
Q Consensus 226 ~G~ 228 (294)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 864
No 428
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.52 E-value=1.9e-14 Score=141.75 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=69.4
Q ss_pred ccccCCHHHHHHHHHHHHHc----------cCCCEEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 147 RMHKVSDGQRRRVQICMGLL----------HPFKVLLLDEIT-VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~----------~~p~iLlLDEPt-~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
.+..|||||+||++||+||+ .+|++||||||| ++||+..+..+.++|.++ .+.|||+|||+.+..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~~- 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHDP- 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhch-
Confidence 45789999999999999987 599999999998 789999999999999886 378999999997765
Q ss_pred hhhceEEEeeC-CeE
Q 022663 216 TWATHLAYIQD-GEL 229 (294)
Q Consensus 216 ~~~d~v~~l~~-G~i 229 (294)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 57999999986 554
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.52 E-value=1.4e-13 Score=120.72 Aligned_cols=74 Identities=24% Similarity=0.235 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-------
Q 022663 150 KVSDGQRRRVQICMGLL----HPFKVLLLDEITVDL----DVVARMDLLDFFKDECEQRGATIVYATHIFDGL------- 214 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gL----D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~------- 214 (294)
.+|+++.++..+.+.+- .+|+++++||||+++ |+..+..+.++++.+.+ .|.|+++ ||+...+
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~~~ 172 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVLTI 172 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eeccccccccccee
Confidence 36666666555555443 369999999999999 88888889999887754 4775554 5665432
Q ss_pred -HhhhceEEEee
Q 022663 215 -ETWATHLAYIQ 225 (294)
Q Consensus 215 -~~~~d~v~~l~ 225 (294)
..+||-|+.|+
T Consensus 173 ~~~~~DgvI~L~ 184 (230)
T PRK08533 173 LRTAATMLIRLE 184 (230)
T ss_pred EEEeeeEEEEEE
Confidence 33455565555
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=99.50 E-value=6.8e-14 Score=137.10 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 150 KVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
.|||||+|||+||++++. +|+++|||||++|||..+...+.+.|.++.+ +.+||+|||++..+ .+||+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence 379999999999999997 5899999999999999999999999998753 68999999999876 6999999998
Q ss_pred CC
Q 022663 226 DG 227 (294)
Q Consensus 226 ~G 227 (294)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 74
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.50 E-value=4.7e-13 Score=127.14 Aligned_cols=186 Identities=15% Similarity=0.189 Sum_probs=105.7
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .|.+...|.....-.... ...+. ...+.+.+.++.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~gvI~~~Gerg~ev~e~~-~~~l~--~~~l~r~v~vv~ 220 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD-LNVIALIGERGREVREFI-ERDLG--PEGLKRSIVVVA 220 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEEecCCccHHHHH-HhhcC--hhhhcCeEEEEE
Confidence 4589999 999999999999999999999999999988775 677776554321100000 00000 000111111111
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH-HHHHHHHHHHHHccCCCEEEeeCC--CCCCCHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD-GQRRRVQICMGLLHPFKVLLLDEI--TVDLDVVA 185 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqkqRv~lAraL~~~p~iLlLDEP--t~gLD~~~ 185 (294)
. ...-....+.... ..-...+.+..-+.+----+.+|+- -|.+| .|+ +.+.|| |+|+|+..
T Consensus 221 ~---~~~~~~~r~~~~~---~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~dp~~ 284 (438)
T PRK07721 221 T---SDQPALMRIKGAY---TATAIAEYFRDQGLNVMLMMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYTPSV 284 (438)
T ss_pred C---CCCCHHHHHHHHH---HHHHHHHHHHHCCCcEEEEEeChHHHHHHHH-HHH---------HhcCCCCccccCCHHH
Confidence 0 0000000000000 0001122222222210001112221 11111 111 123464 89999999
Q ss_pred HHHHHHHHHHHHH-hcCc-----EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 186 RMDLLDFFKDECE-QRGA-----TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 186 ~~~l~~~l~~~~~-~~g~-----tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
...+.+++.++.. +.|. ||++.+||+++ .+||++..+.+|+|+.++...+
T Consensus 285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 9999999998753 2464 99999999994 8999999999999998877654
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.49 E-value=1.2e-13 Score=115.89 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=65.4
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDE--ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE--Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~ 223 (294)
+....+||+++-++.+++..+.+|++|++|| |+.++|+.. .+.+.++. +.+.++|+++|+. .+..++|++..
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~ 147 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKS 147 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhc
Confidence 4456799999999999999999999999999 555666544 45555544 3589999999994 56678999999
Q ss_pred eeCCeEEec
Q 022663 224 IQDGELRRA 232 (294)
Q Consensus 224 l~~G~i~~~ 232 (294)
+.+|++...
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999998765
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.47 E-value=7.5e-14 Score=123.54 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=61.5
Q ss_pred ccCCHHH--------HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663 149 HKVSDGQ--------RRRVQICMGLLHPFKVLLLDEITVDLDVVARMD-LLDFFKDECEQRGATIVYATHIFDGLETWAT 219 (294)
Q Consensus 149 ~~LSgGq--------kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~-l~~~l~~~~~~~g~tviivsHd~~~~~~~~d 219 (294)
..+|||+ +||+++||++..+++|++| ||+.+|..+... ++ +.++ +..+.|.|++||++.... ..|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~la~~~-~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRLAERR-IFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHHhhCC-CCC
Confidence 3479999 9999999999999999999 999999644432 43 3333 335789999999999765 689
Q ss_pred eEEEeeCCeEE
Q 022663 220 HLAYIQDGELR 230 (294)
Q Consensus 220 ~v~~l~~G~i~ 230 (294)
.|.+|+.|.+.
T Consensus 202 aI~vl~s~sr~ 212 (249)
T cd01128 202 AIDILKSGTRK 212 (249)
T ss_pred eEEEcCCCCcc
Confidence 99999999973
No 434
>PRK03918 chromosome segregation protein; Provisional
Probab=99.47 E-value=1.4e-13 Score=142.25 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=69.5
Q ss_pred ccccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 145 QWRMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 145 ~~~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
+.++..|||||++ |++||++++.+|+++||||||++||+..+..+.++|..+.. .+.+||+||||.++ ..+|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~-~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEEL-KDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH-HHhC
Confidence 3567899999999 55666788899999999999999999999999999988754 46899999999985 4689
Q ss_pred ceEEEeeC
Q 022663 219 THLAYIQD 226 (294)
Q Consensus 219 d~v~~l~~ 226 (294)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999983
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.46 E-value=5.5e-13 Score=112.64 Aligned_cols=81 Identities=10% Similarity=-0.000 Sum_probs=66.9
Q ss_pred ccccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--
Q 022663 145 QWRMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLD---VVARMDLLDFFKDECEQRGATIVYATHIFDG-- 213 (294)
Q Consensus 145 ~~~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD---~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-- 213 (294)
+..+..+|+|++| ....+.+...+|+++++|||++.+| ...+..+.+++..+. +.|.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~-~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALK-RFGVTTLLTSEQSGLEG 144 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHH-HCCCEEEEEeccccCCC
Confidence 5667889999998 5555555678999999999999999 878888888887765 459999999998765
Q ss_pred -------HHhhhceEEEeeC
Q 022663 214 -------LETWATHLAYIQD 226 (294)
Q Consensus 214 -------~~~~~d~v~~l~~ 226 (294)
+..+||.|+.|+.
T Consensus 145 ~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred cccCcCceeEeeeEEEEEEE
Confidence 6788999998873
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=99.46 E-value=2.4e-13 Score=140.85 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=68.7
Q ss_pred ccccCCHHHHHHHHH------HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC--cEEEEEeCChhHHHhhh
Q 022663 147 RMHKVSDGQRRRVQI------CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG--ATIVYATHIFDGLETWA 218 (294)
Q Consensus 147 ~~~~LSgGqkqRv~l------AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g--~tviivsHd~~~~~~~~ 218 (294)
.+..|||||++|++| |++++.+|++++|||||++||+..+..+.++|....+..+ .+||+||||.+++ .+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence 578899999999975 5999999999999999999999999999999976554433 4899999999977 589
Q ss_pred ceEEEee
Q 022663 219 THLAYIQ 225 (294)
Q Consensus 219 d~v~~l~ 225 (294)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999998
No 437
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.44 E-value=3.9e-13 Score=140.79 Aligned_cols=81 Identities=21% Similarity=0.144 Sum_probs=74.7
Q ss_pred ccccccCCHHHHHHHHHHHHHcc--------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663 145 QWRMHKVSDGQRRRVQICMGLLH--------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET 216 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~~--------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~ 216 (294)
.+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.. .|.||+||||..++..+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHh
Confidence 46789999999999999999995 8999999999999999999999999998864 59999999999999999
Q ss_pred hhceEEEeeC
Q 022663 217 WATHLAYIQD 226 (294)
Q Consensus 217 ~~d~v~~l~~ 226 (294)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9888888765
No 438
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=8.3e-13 Score=114.40 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=44.1
Q ss_pred ccCCHH--HHHHHHHHHHHccCCCEEEeeCCC-----CCCCHHHHHHHHHHHHHHH
Q 022663 149 HKVSDG--QRRRVQICMGLLHPFKVLLLDEIT-----VDLDVVARMDLLDFFKDEC 197 (294)
Q Consensus 149 ~~LSgG--qkqRv~lAraL~~~p~iLlLDEPt-----~gLD~~~~~~l~~~l~~~~ 197 (294)
+..||+ |++++.||++++.+|+++++|||| ++||+..+..+.+.+.+++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 344444 999999999999999999999999 9999999999999999875
No 439
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=5.5e-13 Score=142.68 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=65.7
Q ss_pred ccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChhHHHh
Q 022663 147 RMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE----QRGATIVYATHIFDGLET 216 (294)
Q Consensus 147 ~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~----~~g~tviivsHd~~~~~~ 216 (294)
..+.|||||+| |++||+|++.+|++|+|||||++||+.+...+.+.|..+.. ..|.+||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44789999999 99999999999999999999999999999999998887642 237899999999999998
Q ss_pred hhc
Q 022663 217 WAT 219 (294)
Q Consensus 217 ~~d 219 (294)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 864
No 440
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.40 E-value=4.5e-12 Score=105.43 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=66.7
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
+..+..|.||-=---+.+.+ .+.-++|||||-++|.|.-+.+++..|.++++. |..+||+||.+-++.-=.-+|+.++
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence 34567899998766666654 567899999999999999999999999998764 8999999999876654456788887
Q ss_pred CCeE
Q 022663 226 DGEL 229 (294)
Q Consensus 226 ~G~i 229 (294)
.+.+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7764
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.37 E-value=2.8e-12 Score=121.14 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=110.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.++.+.++..|.. +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|...++ .+.+...|.....
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~iGerg~e--------- 196 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLVGERGRE--------- 196 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeCCCCccc---------
Confidence 5677778877753 24577774 999999999999999999999999999987654 4544433322100
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc---
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL--- 166 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~--- 166 (294)
..+++ ...+..-++. .-....+.|.|+|+|++.+.+.+
T Consensus 197 -------------------------v~e~~-----------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 197 -------------------------VKDFI-----------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -------------------------HHHHH-----------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 0001000111 01235678999999999999987
Q ss_pred ----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 167 ----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 167 ----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
.++-+|++|+||++.|+. +++...+.+.-. .|.+..+.||-.. +++|.-....|.|...
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~----L~ERag~~~~GSiT~~ 303 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKK----LLERSGKTQKGSITGI 303 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchh----HHHHhccCCCcceEEE
Confidence 789999999999999996 455555554432 3778888888544 4444444577877543
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=8.1e-12 Score=123.05 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=87.3
Q ss_pred cccccccCCHHHHHHHHHHHHHccC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663 144 LQWRMHKVSDGQRRRVQICMGLLHP--FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL 221 (294)
Q Consensus 144 ~~~~~~~LSgGqkqRv~lAraL~~~--p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v 221 (294)
+++...+|||||.||+-||..+=++ -=+++||||+.||-+.--..+++.|+++. ..|-|||+|.||.+.+. .||+|
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDedti~-~AD~i 552 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDEDTIR-AADHI 552 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHHHHh-hcCEE
Confidence 6888999999999999999999776 35889999999999999999999999875 57999999999988665 69999
Q ss_pred EEe------eCCeEEecccHHHHHHhhh
Q 022663 222 AYI------QDGELRRAEKLAELDELRN 243 (294)
Q Consensus 222 ~~l------~~G~i~~~g~~~~~~~~~~ 243 (294)
+-| +.|+|++.|+++++++...
T Consensus 553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 553 IDIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred EeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 987 4689999999999988754
No 443
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.34 E-value=1.6e-12 Score=137.78 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=68.5
Q ss_pred ccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 145 QWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
+..+..|||||++|++||++++ .+|+++||||||++||+..+..+.++|..+++ +.+||+|||++.++ .+||+
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~ 1160 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVADQ 1160 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhh
Confidence 3567899999999999999984 67799999999999999999999999988753 47899999999976 57999
Q ss_pred EEEee
Q 022663 221 LAYIQ 225 (294)
Q Consensus 221 v~~l~ 225 (294)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 97654
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.33 E-value=1.5e-11 Score=125.89 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=60.4
Q ss_pred ccCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH---------hhhceEEEeeCCeEEecccH
Q 022663 166 LHPFKVLLLDEITVDL-DVVARMDLLDFFKDECEQRGATIVYATHIFDGLE---------TWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gL-D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~---------~~~d~v~~l~~G~i~~~g~~ 235 (294)
..+|.++++|||+.+| |+..+..+.++++... +.|.++|++||+++.+. ..|+++++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~R-K~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLR-KANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 6999999999999875 45899999999999876 57999999999998766543
No 445
>PRK00064 recF recombination protein F; Reviewed
Probab=99.26 E-value=1.4e-11 Score=115.14 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=68.1
Q ss_pred cccCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 148 MHKVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
...+|.||+|+++||++|+ .+|+|||||||+++||+..+..+++.+.++ +..++++||+.+.+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhh
Confidence 3579999999999999996 799999999999999999999999888642 458999999988877764
Q ss_pred --ceEEEeeCCeE
Q 022663 219 --THLAYIQDGEL 229 (294)
Q Consensus 219 --d~v~~l~~G~i 229 (294)
++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47999999987
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.26 E-value=1.1e-11 Score=113.35 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=91.8
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccc
Q 022663 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQG 114 (294)
Q Consensus 35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (294)
+++.+..|+.++|+||+|||||||+++|+|.+++. .+.+.+....... .. . ...+ .+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~-----------~~--~-~~~~------~l~- 194 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIF-----------LP--H-PNYV------HLF- 194 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccC-----------CC--C-CCEE------EEE-
Confidence 55778899999999999999999999999987654 5555442211000 00 0 0000 000
Q ss_pred cccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q 022663 115 DFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194 (294)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~ 194 (294)
.. . . .......| ..-.++.+|-.+|++|++|||.+ .++++++.
T Consensus 195 --------~~--~-~---------------~~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~ 237 (308)
T TIGR02788 195 --------YS--K-G---------------GQGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIR 237 (308)
T ss_pred --------ec--C-C---------------CCCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHH
Confidence 00 0 0 00000111 12256678889999999999996 34566666
Q ss_pred HHHHhcCc-EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 195 DECEQRGA-TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 195 ~~~~~~g~-tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
... .|. +++.++|..+ +....+|+..|..|++...|.+.+..
T Consensus 238 a~~--~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 238 AVN--TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHh--cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHHH
Confidence 553 354 5699999998 55569999999999888877777665
No 447
>PRK02224 chromosome segregation protein; Provisional
Probab=99.25 E-value=1.5e-11 Score=127.30 Aligned_cols=79 Identities=28% Similarity=0.253 Sum_probs=68.1
Q ss_pred ccccCCHHHHH------HHHHHHHHccC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChhH
Q 022663 147 RMHKVSDGQRR------RVQICMGLLHP-----F-KVLLLDEITVDLDVVARMDLLDFFKDECEQRGA-TIVYATHIFDG 213 (294)
Q Consensus 147 ~~~~LSgGqkq------Rv~lAraL~~~-----p-~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~-tviivsHd~~~ 213 (294)
.+..|||||++ |+++|++++.+ | +++||||||++||+..+..+.++|..+.. .|. +||+||||.++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence 46789999999 89999998863 3 67999999999999999999999988753 354 89999999998
Q ss_pred HHhhhceEEEeeCC
Q 022663 214 LETWATHLAYIQDG 227 (294)
Q Consensus 214 ~~~~~d~v~~l~~G 227 (294)
+. .||+++.|...
T Consensus 857 ~~-~ad~~~~~~~~ 869 (880)
T PRK02224 857 VG-AADDLVRVEKD 869 (880)
T ss_pred HH-hcCeeEEeecC
Confidence 85 69999999754
No 448
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.24 E-value=1.5e-10 Score=101.78 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=54.4
Q ss_pred cCCHHHHHHHHHHHHHcc--CCCEEEeeCCCCCC---CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-------HHhh
Q 022663 150 KVSDGQRRRVQICMGLLH--PFKVLLLDEITVDL---DVVARMDLLDFFKDECEQRGATIVYATHIFDG-------LETW 217 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~--~p~iLlLDEPt~gL---D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-------~~~~ 217 (294)
..|.++.+.+..+..++. +|+++++||||+.+ |......+++.+..++ +.+.|+++++|+..+ +..+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 456788999999999887 99999999999654 4444445555565544 458999999998765 3445
Q ss_pred hceEEEee
Q 022663 218 ATHLAYIQ 225 (294)
Q Consensus 218 ~d~v~~l~ 225 (294)
+|-++.|+
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 55555554
No 449
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.23 E-value=1.5e-11 Score=130.44 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=68.6
Q ss_pred cccccCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663 146 WRMHKVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL 221 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v 221 (294)
+++..|||||+++++||++|+. +|+++|||||+++||+..+..+.++|.++.. +.++|+|||+...+ .+||++
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-Hhccee
Confidence 4567899999999999999984 7899999999999999999999999988743 57899999998755 689999
Q ss_pred EEeeC
Q 022663 222 AYIQD 226 (294)
Q Consensus 222 ~~l~~ 226 (294)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 87754
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.21 E-value=8.9e-11 Score=95.96 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITV----------DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL 214 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~----------gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~ 214 (294)
..+.++.++++.+++...+|+++++|||++ +.|......+.+++. ..++.+.|+|+++|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE-RARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHhcCCceEEEEEecCCcc
Confidence 344556668888999999999999999995 445455566655554 4455699999999987543
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.15 E-value=4.8e-11 Score=91.65 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=39.1
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
..+|++++|++++|++++|+||||||||||++++. .|.+.+.+.+.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDN 47 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeH
Confidence 46899999999999999999999999999999986 34566666543
No 452
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=3e-10 Score=106.22 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHcc---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 150 KVSDGQRRRVQICMGLLH---------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~---------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
.+|.||+|+++||.+|+. +|+|||||||+++||+..+..+++.|.+. |.+|+++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999988642 679999999987655
No 453
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.07 E-value=1.2e-09 Score=112.20 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=49.3
Q ss_pred ccCCHHHHHHHHHHHHHcc--CCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 149 HKVSDGQRRRVQICMGLLH--PFKVLLLDEI---TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 149 ~~LSgGqkqRv~lAraL~~--~p~iLlLDEP---t~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
..+|.=+.....++.+|-. ++.++|+||| |+.+|..+ ..+.++..+.+..+.++|++||+.+ +..++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence 4577777777777777654 9999999999 99999544 3444555554433589999999955 4456664
No 454
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.05 E-value=8.3e-10 Score=97.39 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=41.4
Q ss_pred HHccCCCEEEeeCCCCC------CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663 164 GLLHPFKVLLLDEITVD------LDVVARMDLLDFFKDECEQRGATIVYATHIFD 212 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~g------LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~ 212 (294)
+...+|+++|+| |++. +|+.....+++.|.+++++.|.+||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346799999999 7754 79999999999999988888999999999864
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=1.6e-10 Score=109.56 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=44.6
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~ 82 (294)
.+|++|||+|++||+++|+|||||||||||+ +|+..|+.+|.+.++|.+..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 4899999999999999999999999999999 77777775557888887654
No 456
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.02 E-value=8.8e-10 Score=114.48 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=68.9
Q ss_pred cccccCCHHHHHHHHHHHHHc------cC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh
Q 022663 146 WRMHKVSDGQRRRVQICMGLL------HP--FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW 217 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~------~~--p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~ 217 (294)
+.+..|||||+-.++||.+|+ .+ -++|+|||||..||+..+..+++.|..+... +.+|+||||+.++.. .
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~e-~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELKE-R 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHH-h
Confidence 567899999999888887765 45 6999999999999999999999999998654 899999999998765 6
Q ss_pred hceEEEeeC
Q 022663 218 ATHLAYIQD 226 (294)
Q Consensus 218 ~d~v~~l~~ 226 (294)
+|+++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 888888765
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.99 E-value=2.1e-09 Score=92.20 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
+++++|..+|+++++|||. |.+....+ + +.+ ..|..++.++|..+.. ...+|++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a-~~G~~v~~t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAA-ETGHLVMSTLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHH-HcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence 5889999999999999996 66543333 3 333 3588999999998755 4567876653
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=3.6e-08 Score=77.56 Aligned_cols=63 Identities=25% Similarity=0.190 Sum_probs=47.9
Q ss_pred cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEEeCC
Q 022663 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD-----FFKDECEQRGATIVYATHI 210 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~-----~l~~~~~~~g~tviivsHd 210 (294)
.....+++..+..++++--..|.+|++||+..-.+......... .........+..+|+++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 44678888888888888888899999999999999888776553 1122233457788999984
No 459
>PRK14079 recF recombination protein F; Provisional
Probab=98.95 E-value=2e-09 Score=100.24 Aligned_cols=77 Identities=27% Similarity=0.279 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 150 KVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
-+|+||+++++||..|+ .+|+++|||||+++||...+..+.+.|... ..++|..|+ ...+|++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~----~~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE----APPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC----CCCCCce
Confidence 58999999999999999 899999999999999999999999888542 224444443 3468999
Q ss_pred EEEeeCCeEEeccc
Q 022663 221 LAYIQDGELRRAEK 234 (294)
Q Consensus 221 v~~l~~G~i~~~g~ 234 (294)
++.+++|++.-..+
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999998865543
No 460
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.95 E-value=9.3e-09 Score=98.02 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=101.0
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccc-cccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGS-WSKTVGSA 107 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 107 (294)
..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .+.+...|.....-... ... ..... ..+.+-.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~-~~vi~~iG~r~~ev~~~-~~~---~~~~~~l~~tvvv~ 224 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD-VNVIALIGERGREVREF-IEH---DLGEEGLKRSVVVV 224 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC-EEEEEEEeecchHHHHH-HHH---HhcccccceEEEEE
Confidence 4689999 999999999999999999999999999987664 44444444321100000 000 00000 00000000
Q ss_pred CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH-HHHHHHHHHHHHccCCCEEEeeCC--CCCCCHH
Q 022663 108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD-GQRRRVQICMGLLHPFKVLLLDEI--TVDLDVV 184 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqkqRv~lAraL~~~p~iLlLDEP--t~gLD~~ 184 (294)
.. ...-....+.... ..-...+.+...+.+----+.+|+- -|.+| .|+ +.+.|| +.|+|+.
T Consensus 225 ~~---~d~~p~~r~~~~~---~a~t~AE~frd~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp~ 288 (440)
T TIGR01026 225 AT---SDQSPLLRLKGAY---VATAIAEYFRDQGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTPS 288 (440)
T ss_pred EC---CCCCHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCCcccccChh
Confidence 00 0000000000000 0001112221122210001122322 22222 222 345675 6699999
Q ss_pred HHHHHHHHHHHHHHhcCc-------EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 185 ARMDLLDFFKDECEQRGA-------TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 185 ~~~~l~~~l~~~~~~~g~-------tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
....+.+++.+... .+. ||++.+||+. +.++|++..+.+|+|+.+...++
T Consensus 289 ~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 289 VFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 99999999988653 467 8999999984 66899999999999998776654
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.90 E-value=1.5e-10 Score=112.28 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=54.7
Q ss_pred ccccccCCHHHHHHHHHH--HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH---------
Q 022663 145 QWRMHKVSDGQRRRVQIC--MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG--------- 213 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lA--raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--------- 213 (294)
++.+..+|+|++|||.|+ .+|...|+.+ ...+..+++++..+. +.|.|+|++||+.+.
T Consensus 110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~ 178 (484)
T TIGR02655 110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGV 178 (484)
T ss_pred HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCc
Confidence 456678999999999999 5665555444 467788888887765 569999999998764
Q ss_pred HHhhhceEEEee
Q 022663 214 LETWATHLAYIQ 225 (294)
Q Consensus 214 ~~~~~d~v~~l~ 225 (294)
...+||.|+.|+
T Consensus 179 ~e~laDgVI~L~ 190 (484)
T TIGR02655 179 EEFVSDNVVILR 190 (484)
T ss_pred eeEeeeeEEEEE
Confidence 266789999887
No 462
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.89 E-value=5e-08 Score=85.86 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=38.4
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCChhHHHh
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATHIFDGLET 216 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~-~g~tviivsHd~~~~~~ 216 (294)
+.+..++|+||+..|=++.....+...+.+...+ .+..+|++||+.+....
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 5678899999999999999988877766666555 47889999999986443
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.85 E-value=4.4e-08 Score=100.98 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=55.1
Q ss_pred HHHHHccCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh--hhceEEEeeCCeEE
Q 022663 161 ICMGLLHPFKVLLLDEITVDL-DVVARMDLLDFFKDECEQRGATIVYATHIFDGLET--WATHLAYIQDGELR 230 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gL-D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~--~~d~v~~l~~G~i~ 230 (294)
|++++..+|.++++|||+.+| |+..+..+.++++.+.+ .|.+++++||+++.+.. .++.++.....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 79999999999988754 58999999999998875 34444434444444
No 464
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.82 E-value=6.3e-09 Score=111.66 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=54.1
Q ss_pred cccccCCHHHHHHHH----HHHH--------HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 146 WRMHKVSDGQRRRVQ----ICMG--------LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~----lAra--------L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
+.++.|||||||+++ +|++ +..+|+++||||||+|||+.++..++++|.++ +.++||+||.+
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 346789999999996 5655 55899999999999999999999999998765 78999999986
No 465
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.82 E-value=4.1e-09 Score=89.50 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--HHhhhceEEEeeCC
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG--LETWATHLAYIQDG 227 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--~~~~~d~v~~l~~G 227 (294)
.|+-+|..||.++..+|+.+..+| +.+||..+..+.+.+.+.. +.|.+||+.+|.+.+ +..+||++++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 388999999999999999988887 7899999999999987764 336799999999955 77889999998765
No 466
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.78 E-value=2.2e-08 Score=86.90 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=54.0
Q ss_pred cccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663 148 MHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL 214 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~ 214 (294)
...+|.|++|.+.|+.++...+ .++++|||-++|.|..+..++++|.+... .+..||++||.+.++
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 4567999999999998888766 89999999999999999999999977654 478999999998765
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.71 E-value=1.9e-08 Score=86.04 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=61.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHhh
Q 022663 44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF 123 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (294)
++||+||||||||||.++|++++ . .+.+.+.+.+.+.... .. .............+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~-~~~~~v~~~D~~~~~~-------~~--~~~~~~~~~~~~~~------------ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--G-NPKVVIISQDSYYKDL-------SH--EELEERKNNNYDHP------------ 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--C-CCCeEEEEeccccccc-------cc--ccHHHhccCCCCCC------------
Confidence 58999999999999999999976 2 2223222222111000 00 00000000000000
Q ss_pred cCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 022663 124 GVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183 (294)
Q Consensus 124 ~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~ 183 (294)
...+.+...+.+..+... ...+..++|.|++++..+ .+.+|+++|+|.|+.+.++
T Consensus 57 --~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 --DAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --CcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 011122233344444332 355667888888876655 5788999999999999986
No 468
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.68 E-value=2.3e-07 Score=89.19 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=45.9
Q ss_pred cCCCEEEeeCCCCCC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HHhhhceEEEeeCCe
Q 022663 167 HPFKVLLLDEITVDL---------DVVARMDLLDFFKDECEQRGATIVYATHIFDG--------LETWATHLAYIQDGE 228 (294)
Q Consensus 167 ~~p~iLlLDEPt~gL---------D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--------~~~~~d~v~~l~~G~ 228 (294)
.+|+++++|.-++=. +....+++...|.+++++.|.|+|+++|.... ++.++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 589999999765421 12234456666778888889999999996543 677899999998654
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.68 E-value=2e-07 Score=81.42 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILA 63 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~ 63 (294)
-+++|++++|.|++|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999988654
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=4.7e-08 Score=92.86 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=54.1
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~ 78 (294)
.+.++.+++++.|.. +..+++.++ +|.+|++++|+||||||||||+++|+|+..++ .+.+.+.|
T Consensus 137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd-~gvv~liG 200 (450)
T PRK06002 137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD-TVVIALVG 200 (450)
T ss_pred CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-eeeeeecc
Confidence 457899999999964 256888885 99999999999999999999999999987775 66666554
No 471
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.65 E-value=6.7e-08 Score=72.28 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=38.3
Q ss_pred ccccccCCHHHHH-HHHHHHHH------cc------CCCEEEeeCCCCCCCHHHHHHHHHHHH
Q 022663 145 QWRMHKVSDGQRR-RVQICMGL------LH------PFKVLLLDEITVDLDVVARMDLLDFFK 194 (294)
Q Consensus 145 ~~~~~~LSgGqkq-Rv~lAraL------~~------~p~iLlLDEPt~gLD~~~~~~l~~~l~ 194 (294)
.+..+.+||||+| .+.+|.++ .. .|++++|||||++||+..+..++++|+
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 3567899999994 44444333 23 379999999999999999999999886
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.64 E-value=2.7e-07 Score=85.74 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~ 212 (294)
+|+++|-.+|++|++||+. |+++....++ .+ ..|.+|+.+.|-.+
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTNS 231 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCCC
Confidence 4677899999999999997 8877654333 22 45899999999754
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.62 E-value=1.6e-07 Score=99.99 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=32.4
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe
Q 022663 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV 76 (294)
Q Consensus 35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~ 76 (294)
+++...++.+++|+|++|+|||||++.+.+.+.....|.+.+
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv 241 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFI 241 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEe
Confidence 567788999999999999999999999977543332344433
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.60 E-value=5.9e-08 Score=66.96 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=29.1
Q ss_pred eeeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 32 FYDFNLGISP-GSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 32 L~~vsl~i~~-Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
+++.++++.+ |+++.|.||||||||||+.+|.=++.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556777775 57999999999999999999875443
No 475
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.60 E-value=9.3e-08 Score=89.39 Aligned_cols=53 Identities=26% Similarity=0.299 Sum_probs=47.6
Q ss_pred ccEEEcceEEEcCCCCCCCcee-----------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFY-----------DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~-----------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.-+.++||++.|++ .+.+|+ |+++.|.+|+.++|+||.|||||||++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 36999999999986 346886 999999999999999999999999999998854
No 476
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.60 E-value=8.8e-07 Score=83.00 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=44.8
Q ss_pred cCCCEEEeeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHHhhhceEEEeeCCe
Q 022663 167 HPFKVLLLDEITV----DLD-----VVARMDLLDFFKDECEQRGATIVYATHIFD--------GLETWATHLAYIQDGE 228 (294)
Q Consensus 167 ~~p~iLlLDEPt~----gLD-----~~~~~~l~~~l~~~~~~~g~tviivsHd~~--------~~~~~~d~v~~l~~G~ 228 (294)
.+|+++++|+-.+ .+| ....+++...|.+++++.+.|+|++.|-.. .++.++|.|+.++..+
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~ 235 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence 5899999999532 232 233445566677788888999999999432 3678899999987543
No 477
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.59 E-value=9.4e-07 Score=79.15 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=31.4
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+.|+.+.--+.+|+++.|.|++|+|||||+..++-
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 45888888899999999999999999999988765
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.58 E-value=1.2e-06 Score=90.18 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHccCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663 164 GLLHPFKVLLLDEITVDLD-VVARMDLLDFFKDECEQRGATIVYATHIFDGLET 216 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD-~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~ 216 (294)
.+..+|.++++|||...|| +.....+.++++... +.|..++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHh
Confidence 3457899999999999999 888889999998875 568899999999987654
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=2.9e-08 Score=84.22 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=39.1
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~ 78 (294)
..+=+.+.+.+|+.++|+||||||||||+++|+|+++++ .+.+.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECC
Confidence 445567889999999999999999999999999988765 66666543
No 480
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.56 E-value=7.5e-07 Score=91.52 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=35.0
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCChhHHH
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATHIFDGLE 215 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~-~g~tviivsHd~~~~~ 215 (294)
-+.++.++|+||+-.|-|+.....+...+.+...+ .+..++++||..++..
T Consensus 668 ~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 668 NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 36789999999996666655555544444333333 5788999999987543
No 481
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.49 E-value=3.8e-06 Score=78.97 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=65.6
Q ss_pred ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHH---------------HHHHHHHHHhcCcEEEEEeCChhH
Q 022663 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL---------------LDFFKDECEQRGATIVYATHIFDG 213 (294)
Q Consensus 149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l---------------~~~l~~~~~~~g~tviivsHd~~~ 213 (294)
.+=||-.-|=..|..||=..+++||+||=|++-..--++.. .+.++.+.++.|.+.|+|+=-...
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd 400 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD 400 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence 46799999999999999999999999999998754443322 344556667789988888888888
Q ss_pred HHhhhceEEEeeCCeE
Q 022663 214 LETWATHLAYIQDGEL 229 (294)
Q Consensus 214 ~~~~~d~v~~l~~G~i 229 (294)
....||+|+.|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8889999999998543
No 482
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.48 E-value=4.8e-07 Score=87.00 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=33.0
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
++++.++.+.+|.+++|+||||+||||++..|++.+..
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 45677778889999999999999999999999996644
No 483
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.47 E-value=2.2e-07 Score=88.11 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=53.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
+.++.+.++..|.. +..+++++ |+|.+|++++|+|+||+|||||+++|+|...++ .+.+...|..
T Consensus 128 ~~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d-~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD-SNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC-EEEEEEECCC
Confidence 35778888888853 25799999 999999999999999999999999999987776 5666655543
No 484
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.43 E-value=3.5e-06 Score=80.97 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=44.1
Q ss_pred cCCCEEEeeCCCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHHhhhceEEEee
Q 022663 167 HPFKVLLLDEITVDLD---------VVARMDLLDFFKDECEQRGATIVYATHIF--------DGLETWATHLAYIQ 225 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD---------~~~~~~l~~~l~~~~~~~g~tviivsHd~--------~~~~~~~d~v~~l~ 225 (294)
.+|+++++|+.++-.. ....+++...|.+++++.+.++|+++|-- ..+..++|.|+.++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le 230 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE 230 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence 5899999999875432 12334555667778888899999999942 24688899999887
No 485
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=3.4e-06 Score=66.83 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=41.1
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChh
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE----QRGATIVYATHIFD 212 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~----~~g~tviivsHd~~ 212 (294)
.+......+...++.+|++||.-.. ++.....+.+.+..... ..+.++|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556667777889999999997664 56666777777776542 24678999998764
No 486
>PRK13764 ATPase; Provisional
Probab=98.41 E-value=2.6e-06 Score=84.00 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=44.7
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC---------------ChhHHHhhhceEEEeeCCeE
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH---------------IFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsH---------------d~~~~~~~~d~v~~l~~G~i 229 (294)
|..+|+++++||.-. .++ ++++..+.. .|..++-+-| ++..+..++|+|+++++|++
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 778999999999974 333 333333332 3777899999 88899999999999999998
No 487
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.40 E-value=1.4e-06 Score=77.76 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=32.8
Q ss_pred CCceeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHhCCcc
Q 022663 29 PPLFYDFNLGISPGS-RCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
+.+++.+++.++++. +++|+||||+|||||++.++..+.
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 347788888887766 899999999999999999988554
No 488
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.40 E-value=5.9e-07 Score=82.47 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=46.2
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR 79 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~ 79 (294)
..++..|.. +..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .+.+...|.
T Consensus 47 ~~~~~~l~t--Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~~vi~~iGe 105 (326)
T cd01136 47 RPIDEVLPT--GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD-VNVIALIGE 105 (326)
T ss_pred ccceeEcCC--CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC-EEEEEEEec
Confidence 334445543 25689999 999999999999999999999999999987765 555555443
No 489
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.39 E-value=3.5e-06 Score=73.44 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=42.3
Q ss_pred cCCCEEEeeCCCC------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC---------hhHHHhhhceEEEee
Q 022663 167 HPFKVLLLDEITV------DLDVVARMDLLDFFKDECEQRGATIVYATHI---------FDGLETWATHLAYIQ 225 (294)
Q Consensus 167 ~~p~iLlLDEPt~------gLD~~~~~~l~~~l~~~~~~~g~tviivsHd---------~~~~~~~~d~v~~l~ 225 (294)
.+++++++| |.+ +.|...+..+.+++..+. +.+.|+++++|. ...+..+||.|++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368889999 544 344556677888887764 569999999995 244677899999985
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.36 E-value=1.9e-06 Score=85.89 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=34.6
Q ss_pred HHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663 135 RLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195 (294)
Q Consensus 135 ~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~ 195 (294)
..++..++. ....+.++||| +|+||| +..||+..+..+++.|.+
T Consensus 246 ~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 246 RDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 345555653 34567789998 999999 799999999999998865
No 491
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=3e-07 Score=87.33 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=36.8
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG 69 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~ 69 (294)
..+++++ |+|.+|++++|+|+||||||||+++|+|...++
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d 182 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD 182 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCC
Confidence 4589999 999999999999999999999999999987654
No 492
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.33 E-value=6.5e-06 Score=75.64 Aligned_cols=40 Identities=33% Similarity=0.281 Sum_probs=32.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
.+|++++|+|||||||||++..|++.+.+. ++.+.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 579999999999999999999999977654 4555554443
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.30 E-value=3.8e-07 Score=78.62 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=26.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
++|++++|+||||||||||++.|+|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999997643
No 494
>PRK09183 transposase/IS protein; Provisional
Probab=98.29 E-value=2e-06 Score=76.85 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=36.7
Q ss_pred EEcceEEEcCCCCCC---CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 15 KVCGMQFSYEGNDKP---PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~---~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+++..+.+....++ ..|.+++| +++|+.+.|+||+|+|||||..+|+..
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345555555321111 24667888 999999999999999999999999663
No 495
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.28 E-value=4.8e-06 Score=78.77 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHccCCCEEEeeC----------CCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHHh
Q 022663 162 CMGLLHPFKVLLLDE----------ITVDLDVVARMDLLDFFKDEC---EQRGATIVYATHIFDGLET 216 (294)
Q Consensus 162 AraL~~~p~iLlLDE----------Pt~gLD~~~~~~l~~~l~~~~---~~~g~tviivsHd~~~~~~ 216 (294)
..|....|.||++|| +.++.|...+..+.+++..+- ...+..||++||+++.+..
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 344567899999999 456778777777777776542 1235679999998876543
No 496
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.27 E-value=5.5e-07 Score=75.81 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999999997543
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.27 E-value=6.3e-07 Score=75.95 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999653
No 498
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.27 E-value=9e-07 Score=85.75 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=48.9
Q ss_pred EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe
Q 022663 16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV 76 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~ 76 (294)
+.|++..|+. ..+++++++.+..|+.++|+||||||||||++.|.|++++. ++...+
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~-~g~e~l 243 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDL-SNEEAL 243 (506)
T ss_pred ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCC-CCcEEE
Confidence 4588888875 46899999999999999999999999999999999998775 554443
No 499
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.24 E-value=1.4e-06 Score=82.99 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=43.3
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .+.+...|..
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d-~~vi~~iGer 200 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD-VNVIALIGER 200 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-eEEEEEEccC
Confidence 4689999 999999999999999999999999999987765 5666666643
No 500
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.24 E-value=2e-05 Score=68.58 Aligned_cols=28 Identities=43% Similarity=0.502 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-+++|+++.|.||+|+|||||+..++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4789999999999999999999988764
Done!