Query 022663
Match_columns 294
No_of_seqs 457 out of 2289
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 9.7E-53 3.3E-57 376.6 22.8 220 11-242 5-235 (275)
2 4g1u_C Hemin import ATP-bindin 100.0 1.7E-52 5.9E-57 373.6 23.3 216 10-240 8-237 (266)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 4.1E-52 1.4E-56 383.9 26.2 218 13-243 4-231 (359)
4 3tui_C Methionine import ATP-b 100.0 1.5E-52 5.1E-57 387.2 23.0 225 10-243 21-256 (366)
5 3rlf_A Maltose/maltodextrin im 100.0 3.5E-52 1.2E-56 386.8 22.5 215 12-243 2-226 (381)
6 1vpl_A ABC transporter, ATP-bi 100.0 1.9E-51 6.5E-56 364.9 23.0 215 10-241 12-236 (256)
7 2olj_A Amino acid ABC transpor 100.0 3.8E-51 1.3E-55 364.1 24.5 216 12-241 23-249 (263)
8 3tif_A Uncharacterized ABC tra 100.0 5.5E-52 1.9E-56 364.2 18.6 218 13-239 1-233 (235)
9 1g6h_A High-affinity branched- 100.0 1.6E-51 5.3E-56 365.9 21.5 212 11-237 5-239 (257)
10 1b0u_A Histidine permease; ABC 100.0 2.5E-51 8.7E-56 365.4 22.3 223 12-241 5-243 (262)
11 2yyz_A Sugar ABC transporter, 100.0 6E-51 2E-55 376.9 25.2 213 13-242 3-225 (359)
12 1z47_A CYSA, putative ABC-tran 100.0 4.8E-51 1.7E-55 376.7 23.2 215 11-242 12-237 (355)
13 1oxx_K GLCV, glucose, ABC tran 100.0 6.2E-51 2.1E-55 376.6 23.8 218 13-242 3-232 (353)
14 1ji0_A ABC transporter; ATP bi 100.0 7.5E-51 2.6E-55 358.0 22.1 214 12-240 5-228 (240)
15 2it1_A 362AA long hypothetical 100.0 6.3E-51 2.1E-55 377.1 22.6 213 13-242 3-225 (362)
16 2pcj_A ABC transporter, lipopr 100.0 3.2E-51 1.1E-55 356.8 19.4 209 12-234 3-222 (224)
17 2onk_A Molybdate/tungstate ABC 100.0 2.8E-50 9.5E-55 354.2 24.5 210 13-242 1-218 (240)
18 1v43_A Sugar-binding transport 100.0 1.5E-50 5.1E-55 375.9 23.5 215 11-242 9-233 (372)
19 1g29_1 MALK, maltose transport 100.0 1.1E-50 3.7E-55 377.3 22.4 219 13-242 3-231 (372)
20 3d31_A Sulfate/molybdate ABC t 100.0 2E-50 6.7E-55 372.2 24.0 212 13-242 1-219 (348)
21 2ihy_A ABC transporter, ATP-bi 100.0 9.4E-51 3.2E-55 364.7 20.4 214 11-240 19-252 (279)
22 2yz2_A Putative ABC transporte 100.0 1.7E-49 5.7E-54 354.5 23.8 214 13-242 2-229 (266)
23 2nq2_C Hypothetical ABC transp 100.0 1.7E-49 5.8E-54 351.9 22.8 200 13-240 4-217 (253)
24 2ixe_A Antigen peptide transpo 100.0 3.1E-49 1.1E-53 353.5 21.4 216 12-241 15-246 (271)
25 2ff7_A Alpha-hemolysin translo 100.0 7.1E-49 2.4E-53 346.8 22.4 212 13-241 7-233 (247)
26 3nh6_A ATP-binding cassette SU 100.0 9E-49 3.1E-53 355.4 22.2 213 12-241 52-278 (306)
27 1mv5_A LMRA, multidrug resista 100.0 1.2E-48 4E-53 344.7 21.7 211 13-241 1-227 (243)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 4.3E-49 1.5E-53 348.8 16.8 209 13-236 3-229 (250)
29 2qi9_C Vitamin B12 import ATP- 100.0 3.6E-48 1.2E-52 342.4 22.1 207 13-240 4-222 (249)
30 2ghi_A Transport protein; mult 100.0 1.1E-47 3.6E-52 341.7 22.8 213 12-241 16-243 (260)
31 2cbz_A Multidrug resistance-as 100.0 6.4E-48 2.2E-52 338.7 20.3 199 13-241 3-218 (237)
32 2zu0_C Probable ATP-dependent 100.0 1.8E-48 6.2E-53 347.9 17.0 214 11-239 18-253 (267)
33 2pjz_A Hypothetical protein ST 100.0 1.1E-47 3.9E-52 341.7 20.1 207 13-241 1-216 (263)
34 2pze_A Cystic fibrosis transme 100.0 1.3E-46 4.5E-51 328.8 20.8 199 12-240 5-218 (229)
35 3gd7_A Fusion complex of cysti 100.0 5.1E-47 1.8E-51 354.1 19.0 214 12-243 18-245 (390)
36 1sgw_A Putative ABC transporte 100.0 8.9E-47 3E-51 326.3 16.7 195 12-229 9-210 (214)
37 3b5x_A Lipid A export ATP-bind 100.0 2.4E-44 8.1E-49 353.6 22.7 213 12-241 340-568 (582)
38 3b60_A Lipid A export ATP-bind 100.0 2.4E-44 8.2E-49 353.6 22.1 213 12-241 340-568 (582)
39 3qf4_A ABC transporter, ATP-bi 100.0 3.2E-44 1.1E-48 352.8 22.1 213 12-241 340-567 (587)
40 2yl4_A ATP-binding cassette SU 100.0 2.4E-44 8.1E-49 354.5 20.9 211 14-240 342-570 (595)
41 4a82_A Cystic fibrosis transme 100.0 2.6E-44 9E-49 353.0 21.0 214 12-241 338-565 (578)
42 3qf4_B Uncharacterized ABC tra 100.0 1.7E-44 6E-49 355.5 19.0 212 13-241 354-579 (598)
43 2bbs_A Cystic fibrosis transme 100.0 4.4E-44 1.5E-48 322.7 18.3 195 12-240 39-247 (290)
44 1yqt_A RNAse L inhibitor; ATP- 100.0 4.6E-42 1.6E-46 333.9 18.4 202 11-240 285-493 (538)
45 3bk7_A ABC transporter ATP-bin 100.0 1.3E-41 4.4E-46 334.4 20.0 201 12-240 356-563 (607)
46 3ozx_A RNAse L inhibitor; ATP 100.0 2E-41 6.9E-46 328.9 20.3 200 12-238 268-475 (538)
47 4f4c_A Multidrug resistance pr 100.0 1.7E-41 5.8E-46 358.9 18.6 215 13-242 1076-1306(1321)
48 4f4c_A Multidrug resistance pr 100.0 1.9E-40 6.4E-45 351.0 24.9 215 13-242 415-643 (1321)
49 3g5u_A MCG1178, multidrug resi 100.0 1.2E-40 4E-45 351.8 22.9 214 13-241 387-614 (1284)
50 3g5u_A MCG1178, multidrug resi 100.0 2.5E-40 8.7E-45 349.2 19.9 215 13-242 1030-1260(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 4E-40 1.4E-44 323.4 17.9 199 17-241 350-560 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 6.9E-40 2.4E-44 322.1 18.7 202 10-227 80-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-39 4.5E-44 316.6 17.0 198 14-227 21-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 2.2E-39 7.6E-44 329.6 15.4 218 11-234 669-981 (986)
55 2iw3_A Elongation factor 3A; a 100.0 1E-37 3.5E-42 317.4 24.4 195 13-240 435-635 (986)
56 3j16_B RLI1P; ribosome recycli 100.0 2.9E-38 9.8E-43 310.2 16.0 206 17-229 81-299 (608)
57 3ux8_A Excinuclease ABC, A sub 100.0 8.8E-38 3E-42 311.5 17.7 207 29-242 31-300 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 3.8E-37 1.3E-41 298.9 15.5 198 17-228 3-214 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 3.4E-36 1.2E-40 300.1 18.2 108 132-241 522-641 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 7.8E-34 2.7E-38 286.3 16.3 109 132-242 709-829 (842)
61 3pih_A Uvrabc system protein A 100.0 4.9E-33 1.7E-37 282.6 21.5 109 132-242 784-904 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 1.6E-32 5.4E-37 277.7 19.0 107 133-241 825-943 (972)
63 2ygr_A Uvrabc system protein A 100.0 3.5E-32 1.2E-36 276.0 21.0 107 133-241 843-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.2E-35 4.3E-40 283.1 -5.0 197 11-239 116-337 (460)
65 4aby_A DNA repair protein RECN 100.0 2.3E-31 7.8E-36 250.6 14.2 79 151-232 296-380 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.1E-29 3.7E-34 236.0 16.4 85 145-231 274-364 (365)
67 4gp7_A Metallophosphoesterase; 100.0 4.4E-31 1.5E-35 220.1 4.7 147 34-216 1-164 (171)
68 3b85_A Phosphate starvation-in 99.9 3.1E-30 1.1E-34 221.8 -6.0 154 29-228 13-171 (208)
69 1e69_A Chromosome segregation 99.9 1.3E-26 4.5E-31 211.7 15.6 82 145-229 214-301 (322)
70 1tq4_A IIGP1, interferon-induc 99.9 9.6E-29 3.3E-33 232.2 -4.7 173 30-227 37-254 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 8.8E-27 3E-31 195.5 7.6 80 144-231 70-159 (178)
72 2v9p_A Replication protein E1; 99.9 4.4E-29 1.5E-33 225.7 -13.4 163 13-238 101-264 (305)
73 1znw_A Guanylate kinase, GMP k 99.9 1.2E-27 4E-32 205.1 -6.7 169 29-225 9-202 (207)
74 3qkt_A DNA double-strand break 99.9 4.9E-24 1.7E-28 196.0 15.2 79 145-225 243-327 (339)
75 2o5v_A DNA replication and rep 99.9 1.1E-24 3.8E-29 201.4 10.8 85 146-238 260-354 (359)
76 1z6g_A Guanylate kinase; struc 99.9 8.1E-27 2.8E-31 201.7 -6.1 183 30-222 11-205 (218)
77 1tf7_A KAIC; homohexamer, hexa 99.9 6.4E-25 2.2E-29 213.0 5.7 153 36-228 275-444 (525)
78 1cr0_A DNA primase/helicase; R 99.9 2.6E-24 8.9E-29 193.8 9.2 179 30-229 23-237 (296)
79 2obl_A ESCN; ATPase, hydrolase 99.9 2.7E-26 9.4E-31 211.5 -4.2 199 11-239 43-254 (347)
80 2pt7_A CAG-ALFA; ATPase, prote 99.9 9.5E-26 3.3E-30 206.7 -1.7 133 31-229 160-292 (330)
81 2o8b_B DNA mismatch repair pro 99.9 6.4E-24 2.2E-28 218.9 10.9 169 11-230 748-930 (1022)
82 2dpy_A FLII, flagellum-specifi 99.9 1.2E-25 4E-30 213.2 -3.5 202 12-240 130-344 (438)
83 3b9q_A Chloroplast SRP recepto 99.9 4.2E-25 1.4E-29 200.0 -0.5 177 32-230 90-285 (302)
84 3thx_A DNA mismatch repair pro 99.9 2E-23 6.7E-28 213.1 11.4 168 13-238 631-811 (934)
85 1tf7_A KAIC; homohexamer, hexa 99.9 6.8E-25 2.3E-29 212.8 -1.7 183 11-228 10-211 (525)
86 2ehv_A Hypothetical protein PH 99.9 5.7E-23 2E-27 179.4 9.3 182 13-226 6-207 (251)
87 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.6E-22 5.6E-27 164.4 11.0 83 144-228 51-141 (148)
88 2og2_A Putative signal recogni 99.9 7E-24 2.4E-28 195.8 0.7 175 33-229 148-341 (359)
89 3thx_B DNA mismatch repair pro 99.9 2.8E-22 9.6E-27 204.1 12.5 144 29-220 660-804 (918)
90 3pih_A Uvrabc system protein A 99.9 5.9E-22 2E-26 201.5 12.9 105 136-242 447-562 (916)
91 2w0m_A SSO2452; RECA, SSPF, un 99.9 1E-21 3.5E-26 169.2 11.6 172 29-228 9-193 (235)
92 4a74_A DNA repair and recombin 99.8 2.5E-21 8.7E-26 166.8 10.4 151 38-228 21-201 (231)
93 3aez_A Pantothenate kinase; tr 99.8 1.2E-24 4E-29 197.9 -12.3 173 13-228 43-246 (312)
94 2ygr_A Uvrabc system protein A 99.8 5.5E-21 1.9E-25 194.3 13.1 103 137-241 505-618 (993)
95 2eyu_A Twitching motility prot 99.8 3.7E-22 1.3E-26 177.1 3.9 142 13-225 5-146 (261)
96 2r6f_A Excinuclease ABC subuni 99.8 3.7E-21 1.3E-25 194.9 11.3 103 137-241 488-601 (972)
97 2jeo_A Uridine-cytidine kinase 99.8 6.2E-22 2.1E-26 173.7 1.7 159 29-228 12-180 (245)
98 2vf7_A UVRA2, excinuclease ABC 99.8 2E-20 6.9E-25 188.8 12.7 104 136-241 362-476 (842)
99 1wb9_A DNA mismatch repair pro 99.8 6.1E-21 2.1E-25 192.4 8.9 155 29-232 595-750 (800)
100 3sop_A Neuronal-specific septi 99.8 1.2E-22 4.2E-27 181.0 -4.0 145 44-213 4-152 (270)
101 1ewq_A DNA mismatch repair pro 99.8 1.5E-20 5.3E-25 188.6 9.3 132 29-218 566-704 (765)
102 2cvh_A DNA repair and recombin 99.8 5.5E-19 1.9E-23 151.1 13.4 154 30-227 7-185 (220)
103 1nlf_A Regulatory protein REPA 99.8 4.5E-19 1.5E-23 158.3 12.2 152 38-215 26-185 (279)
104 1pui_A ENGB, probable GTP-bind 99.8 1.7E-20 5.8E-25 159.5 1.1 177 13-199 3-199 (210)
105 2qnr_A Septin-2, protein NEDD5 99.8 2E-21 6.8E-26 175.9 -5.3 164 17-212 2-168 (301)
106 2i3b_A HCR-ntpase, human cance 99.8 5.5E-21 1.9E-25 161.6 -4.4 157 42-232 1-168 (189)
107 3jvv_A Twitching mobility prot 99.8 4.5E-19 1.5E-23 163.8 5.9 147 18-227 93-246 (356)
108 3kta_B Chromosome segregation 99.8 3.3E-18 1.1E-22 142.4 10.5 82 145-229 59-146 (173)
109 1pzn_A RAD51, DNA repair and r 99.8 1.3E-18 4.6E-23 160.4 8.6 166 30-234 118-309 (349)
110 4ad8_A DNA repair protein RECN 99.7 2E-18 7E-23 167.0 9.7 78 147-227 393-473 (517)
111 3asz_A Uridine kinase; cytidin 99.7 1.4E-20 4.7E-25 160.8 -7.3 142 39-211 3-161 (211)
112 3szr_A Interferon-induced GTP- 99.7 1.8E-19 6.2E-24 177.4 -3.1 194 12-235 9-232 (608)
113 1n0w_A DNA repair protein RAD5 99.7 1.7E-16 5.7E-21 137.7 14.8 150 38-227 20-209 (243)
114 2qag_C Septin-7; cell cycle, c 99.7 3.9E-18 1.3E-22 160.5 1.4 163 12-213 10-179 (418)
115 1rj9_A FTSY, signal recognitio 99.7 1.6E-17 5.4E-22 150.3 4.6 154 41-212 101-259 (304)
116 1lw7_A Transcriptional regulat 99.7 2.2E-19 7.4E-24 166.5 -7.9 166 31-225 157-342 (365)
117 3auy_A DNA double-strand break 99.6 6.1E-16 2.1E-20 143.6 9.6 78 146-226 276-360 (371)
118 2ewv_A Twitching motility prot 99.6 1.8E-16 6.1E-21 147.3 4.7 128 31-222 127-254 (372)
119 1w1w_A Structural maintenance 99.6 1.2E-15 4.2E-20 144.2 9.9 77 148-226 331-411 (430)
120 1s96_A Guanylate kinase, GMP k 99.6 4.9E-16 1.7E-20 134.1 5.5 150 34-239 8-159 (219)
121 3lda_A DNA repair protein RAD5 99.6 1.1E-14 3.6E-19 136.4 14.8 62 167-228 272-364 (400)
122 2qag_B Septin-6, protein NEDD5 99.6 3.4E-16 1.1E-20 147.0 4.4 172 13-211 16-219 (427)
123 2gza_A Type IV secretion syste 99.6 3.4E-16 1.2E-20 144.9 0.7 155 15-228 137-303 (361)
124 3ec2_A DNA replication protein 99.6 1.3E-15 4.4E-20 126.8 3.7 47 166-213 98-145 (180)
125 1udx_A The GTP-binding protein 99.6 7.9E-16 2.7E-20 144.6 2.5 152 32-208 147-305 (416)
126 2bdt_A BH3686; alpha-beta prot 99.6 9.5E-18 3.2E-22 140.8 -9.6 80 152-238 96-182 (189)
127 2kjq_A DNAA-related protein; s 99.5 7.2E-15 2.4E-19 119.3 7.4 44 165-210 80-124 (149)
128 2qm8_A GTPase/ATPase; G protei 99.5 1E-15 3.6E-20 140.3 -3.6 66 12-81 28-93 (337)
129 2bbw_A Adenylate kinase 4, AK4 99.5 2.4E-15 8.4E-20 131.5 -1.2 48 145-199 147-199 (246)
130 1zp6_A Hypothetical protein AT 99.5 6.9E-16 2.3E-20 129.3 -5.4 133 38-196 5-147 (191)
131 1htw_A HI0065; nucleotide-bind 99.5 9.7E-16 3.3E-20 125.7 -4.8 63 14-81 8-70 (158)
132 2dr3_A UPF0273 protein PH0284; 99.4 2.6E-12 9E-17 111.2 14.2 60 167-226 127-196 (247)
133 2oap_1 GSPE-2, type II secreti 99.4 4E-17 1.4E-21 157.4 -19.0 177 30-220 248-459 (511)
134 1p9r_A General secretion pathw 99.4 1.3E-15 4.3E-20 143.4 -8.8 153 13-173 143-314 (418)
135 2f1r_A Molybdopterin-guanine d 99.4 4.4E-15 1.5E-19 123.3 -5.8 138 43-199 3-162 (171)
136 1nij_A Hypothetical protein YJ 99.4 1.2E-15 4E-20 138.9 -11.0 57 149-218 140-196 (318)
137 1ls1_A Signal recognition part 99.3 2.2E-12 7.5E-17 116.1 9.4 142 14-208 77-219 (295)
138 3e70_C DPA, signal recognition 99.3 3.1E-12 1.1E-16 116.7 10.4 167 38-230 125-307 (328)
139 1odf_A YGR205W, hypothetical 3 99.3 5.4E-14 1.8E-18 126.3 -1.8 126 40-184 29-168 (290)
140 2yhs_A FTSY, cell division pro 99.3 1.2E-12 4.2E-17 124.6 7.0 49 32-81 283-331 (503)
141 1vma_A Cell division protein F 99.3 2.3E-12 7.8E-17 116.5 8.3 114 34-197 96-212 (306)
142 1lvg_A Guanylate kinase, GMP k 99.3 4.4E-15 1.5E-19 126.0 -9.1 57 161-226 116-173 (198)
143 1in4_A RUVB, holliday junction 99.3 2.6E-15 9E-20 137.4 -11.6 172 12-220 17-211 (334)
144 3lnc_A Guanylate kinase, GMP k 99.3 8.4E-15 2.9E-19 126.8 -8.4 38 30-67 15-53 (231)
145 2zr9_A Protein RECA, recombina 99.3 2.4E-11 8.1E-16 111.8 14.1 73 158-230 127-233 (349)
146 3c8u_A Fructokinase; YP_612366 99.3 2.9E-14 9.9E-19 121.6 -5.4 146 39-228 19-174 (208)
147 1sxj_E Activator 1 40 kDa subu 99.3 5.3E-12 1.8E-16 115.4 9.3 148 43-224 37-188 (354)
148 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.6E-15 8.9E-20 140.0 -13.4 66 168-235 139-208 (392)
149 2r6a_A DNAB helicase, replicat 99.3 1.1E-11 3.8E-16 117.8 9.9 178 30-229 191-401 (454)
150 2rcn_A Probable GTPase ENGC; Y 99.3 3.8E-12 1.3E-16 117.2 6.1 116 31-165 205-328 (358)
151 2px0_A Flagellar biosynthesis 99.3 7.8E-12 2.7E-16 112.5 7.7 139 40-231 103-246 (296)
152 1sq5_A Pantothenate kinase; P- 99.2 9.8E-14 3.4E-18 125.6 -6.0 58 13-76 37-115 (308)
153 3euj_A Chromosome partition pr 99.2 9.3E-12 3.2E-16 118.7 4.6 49 30-80 18-66 (483)
154 2yv5_A YJEQ protein; hydrolase 99.2 5.4E-12 1.8E-16 113.9 2.4 120 37-163 160-300 (302)
155 2x8a_A Nuclear valosin-contain 99.2 5.8E-14 2E-18 125.1 -10.5 146 29-193 33-190 (274)
156 2ius_A DNA translocase FTSK; n 99.1 6.5E-12 2.2E-16 120.6 -0.5 175 34-223 159-361 (512)
157 3nwj_A ATSK2; P loop, shikimat 99.0 2.3E-11 8E-16 106.8 -1.5 53 11-65 15-71 (250)
158 3hr8_A Protein RECA; alpha and 98.9 1.5E-08 5.2E-13 93.1 15.3 40 38-77 57-96 (356)
159 1u0l_A Probable GTPase ENGC; p 98.9 3E-10 1E-14 102.3 3.0 44 37-81 164-210 (301)
160 1oix_A RAS-related protein RAB 98.9 1.1E-09 3.6E-14 91.6 4.6 37 157-195 152-188 (191)
161 2ce7_A Cell division protein F 98.9 1.8E-09 6.3E-14 102.9 6.4 117 30-215 39-168 (476)
162 1jjv_A Dephospho-COA kinase; P 98.9 1.3E-09 4.4E-14 92.1 4.4 71 151-226 60-132 (206)
163 2xau_A PRE-mRNA-splicing facto 98.8 2.9E-09 9.8E-14 107.5 6.3 75 146-221 186-262 (773)
164 3tr0_A Guanylate kinase, GMP k 98.8 1.3E-09 4.6E-14 91.6 3.2 31 36-66 1-31 (205)
165 1t9h_A YLOQ, probable GTPase E 98.8 6.3E-10 2.2E-14 100.4 0.7 39 37-76 168-206 (307)
166 3k1j_A LON protease, ATP-depen 98.8 1E-09 3.5E-14 107.9 1.4 168 17-195 38-227 (604)
167 1qhl_A Protein (cell division 98.8 8.8E-11 3E-15 101.6 -6.0 58 12-81 8-65 (227)
168 2z43_A DNA repair and recombin 98.8 2.9E-08 9.9E-13 90.1 10.3 56 157-212 189-259 (324)
169 1v5w_A DMC1, meiotic recombina 98.8 3.6E-08 1.2E-12 90.2 10.6 56 157-212 204-275 (343)
170 3kta_A Chromosome segregation 98.7 7.5E-09 2.6E-13 85.5 4.2 35 33-68 18-52 (182)
171 1fnn_A CDC6P, cell division co 98.7 8.7E-08 3E-12 87.9 11.0 50 167-217 124-175 (389)
172 4a1f_A DNAB helicase, replicat 98.7 7E-08 2.4E-12 88.0 9.6 128 30-209 34-164 (338)
173 3t34_A Dynamin-related protein 98.7 2.7E-08 9.2E-13 91.5 6.9 56 16-74 11-67 (360)
174 3vaa_A Shikimate kinase, SK; s 98.6 1.7E-08 5.8E-13 84.9 3.7 38 28-65 11-48 (199)
175 2f9l_A RAB11B, member RAS onco 98.6 6.5E-09 2.2E-13 87.1 1.1 37 159-197 130-166 (199)
176 3uie_A Adenylyl-sulfate kinase 98.6 4.4E-09 1.5E-13 88.6 0.1 48 17-67 3-50 (200)
177 2e87_A Hypothetical protein PH 98.6 1.7E-07 5.9E-12 86.1 10.3 65 146-213 227-294 (357)
178 2j41_A Guanylate kinase; GMP, 98.6 2.7E-08 9.3E-13 83.5 3.6 32 37-68 1-32 (207)
179 1u94_A RECA protein, recombina 98.6 1.4E-06 4.8E-11 80.1 15.1 26 39-64 60-85 (356)
180 3a00_A Guanylate kinase, GMP k 98.5 2.5E-08 8.4E-13 83.1 2.2 27 42-68 1-27 (186)
181 4eun_A Thermoresistant glucoki 98.4 7.3E-08 2.5E-12 81.0 3.1 35 32-66 19-53 (200)
182 2qtf_A Protein HFLX, GTP-bindi 98.4 2.5E-07 8.5E-12 85.4 6.4 51 145-199 299-354 (364)
183 3kl4_A SRP54, signal recogniti 98.4 5.4E-07 1.9E-11 84.8 8.7 29 41-69 96-124 (433)
184 3bh0_A DNAB-like replicative h 98.4 9.2E-07 3.1E-11 79.9 9.7 129 30-210 56-190 (315)
185 4e22_A Cytidylate kinase; P-lo 98.4 4.6E-08 1.6E-12 85.6 1.1 41 31-75 19-62 (252)
186 1kgd_A CASK, peripheral plasma 98.4 1.2E-07 4E-12 78.5 3.2 28 40-67 3-30 (180)
187 2qby_A CDC6 homolog 1, cell di 98.4 8.9E-08 3E-12 87.5 2.0 28 40-67 43-70 (386)
188 2dhr_A FTSH; AAA+ protein, hex 98.3 5.3E-09 1.8E-13 100.3 -7.0 58 15-80 42-99 (499)
189 2z4s_A Chromosomal replication 98.3 1.8E-07 6.2E-12 88.4 3.6 44 167-211 193-237 (440)
190 1w1w_A Structural maintenance 98.3 1.6E-07 5.3E-12 88.5 2.7 48 13-69 6-53 (430)
191 1svm_A Large T antigen; AAA+ f 98.3 7.7E-08 2.6E-12 89.1 0.6 36 30-65 157-192 (377)
192 2vp4_A Deoxynucleoside kinase; 98.3 1.2E-07 4E-12 81.7 1.6 41 35-80 13-53 (230)
193 1ixz_A ATP-dependent metallopr 98.3 1.7E-08 5.7E-13 88.0 -4.0 58 14-79 26-83 (254)
194 3tau_A Guanylate kinase, GMP k 98.3 2.7E-07 9.4E-12 78.1 3.5 29 40-68 6-34 (208)
195 3tqc_A Pantothenate kinase; bi 98.3 1.7E-08 5.9E-13 91.5 -4.3 46 19-67 66-117 (321)
196 1iy2_A ATP-dependent metallopr 98.3 2.1E-08 7.1E-13 88.8 -3.9 57 15-79 51-107 (278)
197 3b9p_A CG5977-PA, isoform A; A 98.2 4.7E-06 1.6E-10 73.9 10.4 74 152-225 97-187 (297)
198 1zu4_A FTSY; GTPase, signal re 98.2 2.5E-07 8.5E-12 83.9 1.9 48 32-80 95-142 (320)
199 1rz3_A Hypothetical protein rb 98.2 2.8E-07 9.7E-12 77.5 2.2 40 38-78 18-57 (201)
200 1ega_A Protein (GTP-binding pr 98.2 1.1E-06 3.9E-11 78.7 5.8 65 151-222 101-170 (301)
201 3ice_A Transcription terminati 98.2 2.3E-07 7.9E-12 85.6 1.1 52 13-66 133-198 (422)
202 2dy1_A Elongation factor G; tr 98.2 5.2E-07 1.8E-11 89.5 3.4 30 36-65 3-32 (665)
203 1ypw_A Transitional endoplasmi 98.2 6.9E-07 2.4E-11 90.5 4.1 30 37-66 233-262 (806)
204 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 9.5E-07 3.2E-11 71.0 3.8 31 33-64 15-45 (149)
205 2i1q_A DNA repair and recombin 98.1 6.1E-06 2.1E-10 74.4 8.9 27 38-64 94-120 (322)
206 2p67_A LAO/AO transport system 98.1 3.9E-08 1.3E-12 90.0 -5.8 54 13-69 30-83 (341)
207 2q6t_A DNAB replication FORK h 98.1 2.1E-05 7.1E-10 74.2 12.8 175 30-226 188-397 (444)
208 3cr8_A Sulfate adenylyltranfer 98.1 5.5E-07 1.9E-11 87.3 1.9 42 38-79 365-407 (552)
209 1knq_A Gluconate kinase; ALFA/ 98.1 8.2E-07 2.8E-11 72.6 2.6 26 40-65 6-31 (175)
210 3ney_A 55 kDa erythrocyte memb 98.1 1.1E-06 3.8E-11 74.0 3.0 31 36-66 13-43 (197)
211 1kag_A SKI, shikimate kinase I 98.1 1.1E-06 3.7E-11 71.6 2.7 26 41-66 3-28 (173)
212 1xp8_A RECA protein, recombina 98.1 3.9E-05 1.3E-09 70.7 13.2 27 38-64 70-96 (366)
213 2ffh_A Protein (FFH); SRP54, s 98.1 8E-06 2.7E-10 76.7 8.7 57 16-80 79-135 (425)
214 2qt1_A Nicotinamide riboside k 98.0 1.9E-06 6.4E-11 72.5 3.0 33 34-66 13-45 (207)
215 3cf0_A Transitional endoplasmi 98.0 3.6E-06 1.2E-10 75.3 4.6 29 37-65 44-72 (301)
216 3lxx_A GTPase IMAP family memb 98.0 6.4E-05 2.2E-09 64.5 11.4 46 166-211 110-157 (239)
217 3qks_A DNA double-strand break 97.9 5E-06 1.7E-10 70.2 3.8 30 33-63 15-44 (203)
218 2pez_A Bifunctional 3'-phospho 97.9 3.6E-06 1.2E-10 69.1 2.6 29 40-68 3-31 (179)
219 1j8m_F SRP54, signal recogniti 97.9 2.9E-05 9.9E-10 69.5 8.6 56 16-78 77-133 (297)
220 3bos_A Putative DNA replicatio 97.8 4.9E-05 1.7E-09 64.4 8.7 26 41-66 51-76 (242)
221 4eaq_A DTMP kinase, thymidylat 97.8 7.4E-06 2.5E-10 70.5 3.3 38 31-68 12-52 (229)
222 1l8q_A Chromosomal replication 97.8 2.5E-05 8.7E-10 70.2 6.7 43 167-210 97-140 (324)
223 3m6a_A ATP-dependent protease 97.8 5.5E-07 1.9E-11 87.3 -4.8 48 17-68 87-134 (543)
224 2w58_A DNAI, primosome compone 97.8 4.1E-05 1.4E-09 63.8 7.3 24 43-66 55-78 (202)
225 1cke_A CK, MSSA, protein (cyti 97.8 8.3E-06 2.9E-10 69.2 3.0 25 42-66 5-29 (227)
226 1y63_A LMAJ004144AAA protein; 97.8 1.1E-05 3.7E-10 66.7 3.4 31 34-64 2-32 (184)
227 4ad8_A DNA repair protein RECN 97.8 5.1E-06 1.8E-10 80.0 1.4 33 31-64 50-82 (517)
228 2www_A Methylmalonic aciduria 97.8 9.1E-06 3.1E-10 74.4 2.8 38 40-78 72-109 (349)
229 3auy_A DNA double-strand break 97.7 2.4E-05 8.3E-10 72.0 5.3 43 14-63 3-46 (371)
230 3cmw_A Protein RECA, recombina 97.7 0.00045 1.5E-08 74.5 15.3 28 39-66 729-756 (1706)
231 2qor_A Guanylate kinase; phosp 97.7 1.5E-05 5.1E-10 66.9 3.2 28 38-65 8-35 (204)
232 2if2_A Dephospho-COA kinase; a 97.7 1.2E-05 4.3E-10 67.1 2.4 21 44-64 3-23 (204)
233 2qag_A Septin-2, protein NEDD5 97.7 3.6E-06 1.2E-10 77.4 -1.1 46 12-66 16-61 (361)
234 3io5_A Recombination and repai 97.7 0.00026 8.9E-09 63.7 10.8 60 153-212 92-173 (333)
235 3llm_A ATP-dependent RNA helic 97.7 5.9E-05 2E-09 64.7 6.2 27 38-64 72-98 (235)
236 4fcw_A Chaperone protein CLPB; 97.7 2.3E-05 7.7E-10 69.7 3.6 39 30-68 24-73 (311)
237 1f6b_A SAR1; gtpases, N-termin 97.7 5.8E-06 2E-10 69.0 -0.3 42 20-64 6-47 (198)
238 2gj8_A MNME, tRNA modification 97.6 2.3E-05 7.7E-10 63.8 3.0 26 40-65 2-27 (172)
239 1q57_A DNA primase/helicase; d 97.6 0.00041 1.4E-08 66.3 12.0 68 158-226 342-441 (503)
240 3h4m_A Proteasome-activating n 97.6 8.5E-05 2.9E-09 65.2 6.7 27 39-65 48-74 (285)
241 3cmw_A Protein RECA, recombina 97.6 0.001 3.5E-08 71.7 16.0 26 39-64 380-405 (1706)
242 2v1u_A Cell division control p 97.6 6.8E-05 2.3E-09 68.2 6.1 27 40-66 42-68 (387)
243 3cmu_A Protein RECA, recombina 97.6 0.00063 2.2E-08 74.3 14.0 70 158-227 449-552 (2050)
244 2yvu_A Probable adenylyl-sulfa 97.6 2.3E-05 8E-10 64.5 2.2 32 37-68 8-39 (186)
245 2ga8_A Hypothetical 39.9 kDa p 97.6 9.3E-06 3.2E-10 74.3 -0.3 37 30-66 10-48 (359)
246 1sxj_C Activator 1 40 kDa subu 97.5 4.7E-06 1.6E-10 75.6 -2.5 49 17-68 22-72 (340)
247 2wji_A Ferrous iron transport 97.5 5E-05 1.7E-09 61.1 3.4 23 44-66 5-27 (165)
248 1m2o_B GTP-binding protein SAR 97.5 3.9E-05 1.3E-09 63.4 2.5 34 30-64 12-45 (190)
249 2zts_A Putative uncharacterize 97.5 0.00021 7.2E-09 61.0 7.1 60 166-225 133-206 (251)
250 3cm0_A Adenylate kinase; ATP-b 97.5 5.1E-05 1.8E-09 62.2 2.8 25 40-64 2-26 (186)
251 3t61_A Gluconokinase; PSI-biol 97.5 6E-05 2E-09 62.9 3.3 24 42-65 18-41 (202)
252 3bgw_A DNAB-like replicative h 97.4 0.00054 1.9E-08 64.6 10.0 54 151-209 263-318 (444)
253 1q3t_A Cytidylate kinase; nucl 97.4 6.2E-05 2.1E-09 64.6 3.1 26 39-64 13-38 (236)
254 1ypw_A Transitional endoplasmi 97.4 6.3E-06 2.2E-10 83.5 -3.7 32 35-66 504-535 (806)
255 1m7g_A Adenylylsulfate kinase; 97.4 6.7E-05 2.3E-09 63.2 2.8 31 37-67 20-50 (211)
256 1lv7_A FTSH; alpha/beta domain 97.4 5.7E-05 2E-09 65.5 2.2 34 31-66 36-69 (257)
257 2wjg_A FEOB, ferrous iron tran 97.4 9.5E-05 3.3E-09 60.3 3.4 22 44-65 9-30 (188)
258 2zej_A Dardarin, leucine-rich 97.4 0.0001 3.6E-09 60.3 3.5 22 44-65 4-25 (184)
259 2b8t_A Thymidine kinase; deoxy 97.3 0.00028 9.7E-09 60.4 6.1 52 168-225 89-150 (223)
260 3kb2_A SPBC2 prophage-derived 97.3 0.00011 3.7E-09 59.1 3.2 21 44-64 3-23 (173)
261 3dm5_A SRP54, signal recogniti 97.3 0.0027 9.3E-08 59.7 13.1 27 41-67 99-125 (443)
262 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.7E-09 59.1 3.7 24 42-65 3-26 (178)
263 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00013 4.5E-09 67.7 3.6 28 38-65 18-45 (396)
264 1np6_A Molybdopterin-guanine d 97.3 0.00012 4.2E-09 60.2 2.9 26 43-68 7-32 (174)
265 2p5t_B PEZT; postsegregational 97.2 7.3E-05 2.5E-09 65.0 1.2 34 32-66 23-56 (253)
266 1kht_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 58.7 3.6 23 42-64 3-25 (192)
267 2qgz_A Helicase loader, putati 97.2 0.00012 4.3E-09 65.6 2.6 25 42-66 152-176 (308)
268 1mky_A Probable GTP-binding pr 97.2 0.00028 9.6E-09 66.3 4.7 23 44-66 182-204 (439)
269 3r20_A Cytidylate kinase; stru 97.2 0.00019 6.6E-09 61.8 3.3 23 42-64 9-31 (233)
270 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0022 7.5E-08 55.1 10.1 26 40-65 37-62 (262)
271 2r8r_A Sensor protein; KDPD, P 97.2 8.6E-05 2.9E-09 63.7 1.0 44 165-209 81-125 (228)
272 3lw7_A Adenylate kinase relate 97.2 0.00021 7.1E-09 57.3 3.3 19 44-62 3-21 (179)
273 3d8b_A Fidgetin-like protein 1 97.2 0.0014 4.7E-08 59.8 9.0 26 40-65 115-140 (357)
274 2rhm_A Putative kinase; P-loop 97.1 0.00019 6.5E-09 58.9 2.9 25 40-64 3-27 (193)
275 3iij_A Coilin-interacting nucl 97.1 0.00016 5.5E-09 59.0 2.2 24 40-63 9-32 (180)
276 1vht_A Dephospho-COA kinase; s 97.1 0.00024 8.2E-09 59.9 3.4 24 41-64 3-26 (218)
277 1via_A Shikimate kinase; struc 97.1 0.00021 7.1E-09 58.1 2.9 21 44-64 6-26 (175)
278 2jaq_A Deoxyguanosine kinase; 97.1 0.00025 8.5E-09 58.6 3.3 21 44-64 2-22 (205)
279 1ex7_A Guanylate kinase; subst 97.1 0.00025 8.5E-09 59.0 3.1 20 45-64 4-23 (186)
280 2ze6_A Isopentenyl transferase 97.1 0.00027 9.4E-09 61.4 3.3 21 44-64 3-23 (253)
281 3trf_A Shikimate kinase, SK; a 97.1 0.00032 1.1E-08 57.4 3.5 24 41-64 4-27 (185)
282 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00034 1.2E-08 64.6 4.0 48 167-215 261-311 (392)
283 3cmu_A Protein RECA, recombina 97.1 0.0039 1.3E-07 68.3 12.6 29 38-66 728-756 (2050)
284 2v54_A DTMP kinase, thymidylat 97.0 0.00038 1.3E-08 57.7 3.8 26 41-66 3-28 (204)
285 1ly1_A Polynucleotide kinase; 97.0 0.00033 1.1E-08 56.7 3.3 22 43-64 3-24 (181)
286 3k53_A Ferrous iron transport 97.0 0.00031 1.1E-08 61.5 3.1 51 177-227 144-194 (271)
287 1uf9_A TT1252 protein; P-loop, 97.0 0.00034 1.2E-08 57.9 3.1 23 42-64 8-30 (203)
288 1gtv_A TMK, thymidylate kinase 97.0 0.00016 5.5E-09 60.5 1.1 24 44-67 2-25 (214)
289 2c95_A Adenylate kinase 1; tra 97.0 0.00041 1.4E-08 57.0 3.3 25 40-64 7-31 (196)
290 2plr_A DTMP kinase, probable t 97.0 0.00042 1.4E-08 57.6 3.4 25 41-65 3-27 (213)
291 1gvn_B Zeta; postsegregational 97.0 0.00035 1.2E-08 62.0 3.0 26 39-64 30-55 (287)
292 2wwf_A Thymidilate kinase, put 97.0 0.00044 1.5E-08 57.7 3.4 25 40-64 8-32 (212)
293 1nn5_A Similar to deoxythymidy 96.9 0.00049 1.7E-08 57.4 3.4 26 39-64 6-31 (215)
294 1tev_A UMP-CMP kinase; ploop, 96.9 0.00047 1.6E-08 56.4 3.2 23 42-64 3-25 (196)
295 1nks_A Adenylate kinase; therm 96.9 0.00049 1.7E-08 56.2 3.0 22 44-65 3-24 (194)
296 3ake_A Cytidylate kinase; CMP 96.8 0.00057 1.9E-08 56.7 3.3 22 44-65 4-25 (208)
297 2vli_A Antibiotic resistance p 96.8 0.00041 1.4E-08 56.4 2.3 24 41-64 4-27 (183)
298 2z0h_A DTMP kinase, thymidylat 96.8 0.0006 2.1E-08 56.0 3.3 22 44-65 2-23 (197)
299 1xjc_A MOBB protein homolog; s 96.8 0.00064 2.2E-08 55.6 3.3 25 43-67 5-29 (169)
300 3hu3_A Transitional endoplasmi 96.8 0.00095 3.3E-08 63.7 4.9 26 39-64 235-260 (489)
301 3cf2_A TER ATPase, transitiona 96.8 0.0022 7.7E-08 64.6 7.7 25 41-65 237-261 (806)
302 3b1v_A Ferrous iron uptake tra 96.8 0.00067 2.3E-08 59.7 3.5 22 44-65 5-26 (272)
303 3euj_A Chromosome partition pr 96.8 0.0023 7.7E-08 60.9 7.1 72 147-225 376-464 (483)
304 1xx6_A Thymidine kinase; NESG, 96.8 0.0026 8.9E-08 52.9 6.6 52 168-225 81-142 (191)
305 2bwj_A Adenylate kinase 5; pho 96.7 0.00076 2.6E-08 55.5 3.2 27 38-64 8-34 (199)
306 1fzq_A ADP-ribosylation factor 96.7 0.00073 2.5E-08 55.0 3.0 22 44-65 18-39 (181)
307 1aky_A Adenylate kinase; ATP:A 96.7 0.00092 3.1E-08 56.4 3.7 24 41-64 3-26 (220)
308 2ged_A SR-beta, signal recogni 96.7 0.00067 2.3E-08 55.4 2.7 23 43-65 49-71 (193)
309 3q72_A GTP-binding protein RAD 96.7 0.0008 2.7E-08 53.3 3.0 22 44-65 4-25 (166)
310 1zd8_A GTP:AMP phosphotransfer 96.7 0.00084 2.9E-08 57.0 3.3 25 40-64 5-29 (227)
311 3fb4_A Adenylate kinase; psych 96.7 0.00084 2.9E-08 56.3 3.3 21 44-64 2-22 (216)
312 4b4t_L 26S protease subunit RP 96.7 0.0072 2.5E-07 56.7 9.9 27 39-65 212-238 (437)
313 1e6c_A Shikimate kinase; phosp 96.7 0.0008 2.7E-08 54.1 2.9 22 43-64 3-24 (173)
314 2nzj_A GTP-binding protein REM 96.7 0.001 3.5E-08 53.0 3.5 22 44-65 6-27 (175)
315 2pbr_A DTMP kinase, thymidylat 96.7 0.00093 3.2E-08 54.6 3.3 21 44-64 2-22 (195)
316 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.7E-08 53.3 3.5 23 42-64 7-29 (168)
317 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.9E-08 54.9 3.7 24 41-64 19-42 (201)
318 2pt5_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 53.2 3.3 21 44-64 2-22 (168)
319 1zak_A Adenylate kinase; ATP:A 96.7 0.00085 2.9E-08 56.7 2.9 24 41-64 4-27 (222)
320 2erx_A GTP-binding protein DI- 96.6 0.0011 3.8E-08 52.5 3.4 22 44-65 5-26 (172)
321 3q85_A GTP-binding protein REM 96.6 0.0011 3.8E-08 52.6 3.4 22 44-65 4-25 (169)
322 2iyv_A Shikimate kinase, SK; t 96.6 0.00092 3.1E-08 54.5 3.0 22 43-64 3-24 (184)
323 3dl0_A Adenylate kinase; phosp 96.6 0.001 3.5E-08 55.8 3.3 21 44-64 2-22 (216)
324 3tw8_B RAS-related protein RAB 96.6 0.0011 3.8E-08 53.1 3.3 22 44-65 11-32 (181)
325 1qf9_A UMP/CMP kinase, protein 96.6 0.001 3.4E-08 54.3 3.0 23 42-64 6-28 (194)
326 2lkc_A Translation initiation 96.6 0.0014 4.9E-08 52.4 3.9 25 41-65 7-31 (178)
327 1z2a_A RAS-related protein RAB 96.6 0.00093 3.2E-08 52.9 2.7 22 44-65 7-28 (168)
328 1ukz_A Uridylate kinase; trans 96.6 0.0011 3.7E-08 55.0 3.2 24 41-64 14-37 (203)
329 2dyk_A GTP-binding protein; GT 96.6 0.001 3.4E-08 52.3 2.7 22 44-65 3-24 (161)
330 3lxw_A GTPase IMAP family memb 96.6 0.0012 4.1E-08 57.0 3.4 58 155-213 89-151 (247)
331 2grj_A Dephospho-COA kinase; T 96.6 0.0012 4.1E-08 55.0 3.3 22 43-64 13-34 (192)
332 1svi_A GTP-binding protein YSX 96.6 0.0011 3.6E-08 54.2 2.9 23 43-65 24-46 (195)
333 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 57.4 3.4 24 41-64 3-26 (260)
334 1moz_A ARL1, ADP-ribosylation 96.6 0.00081 2.8E-08 54.3 2.1 23 42-64 18-40 (183)
335 1uj2_A Uridine-cytidine kinase 96.5 0.0012 4.2E-08 57.0 3.3 22 43-64 23-44 (252)
336 3pqc_A Probable GTP-binding pr 96.5 0.0011 3.8E-08 53.8 2.9 22 44-65 25-46 (195)
337 2ce2_X GTPase HRAS; signaling 96.5 0.00096 3.3E-08 52.4 2.4 22 44-65 5-26 (166)
338 1kao_A RAP2A; GTP-binding prot 96.5 0.0011 3.9E-08 52.1 2.7 21 44-64 5-25 (167)
339 1u8z_A RAS-related protein RAL 96.5 0.0012 4E-08 52.1 2.7 22 44-65 6-27 (168)
340 1z08_A RAS-related protein RAB 96.5 0.0012 4E-08 52.4 2.7 22 44-65 8-29 (170)
341 1z0j_A RAB-22, RAS-related pro 96.5 0.0012 4E-08 52.3 2.7 22 44-65 8-29 (170)
342 1ky3_A GTP-binding protein YPT 96.5 0.0012 4.1E-08 52.9 2.7 22 44-65 10-31 (182)
343 1ek0_A Protein (GTP-binding pr 96.5 0.0011 3.8E-08 52.4 2.5 22 44-65 5-26 (170)
344 2cxx_A Probable GTP-binding pr 96.5 0.0013 4.3E-08 53.3 2.9 22 44-65 3-24 (190)
345 1g16_A RAS-related protein SEC 96.5 0.001 3.6E-08 52.7 2.2 22 44-65 5-26 (170)
346 1c1y_A RAS-related protein RAP 96.5 0.0013 4.4E-08 51.9 2.7 21 44-64 5-25 (167)
347 4b4t_J 26S protease regulatory 96.5 0.0093 3.2E-07 55.3 8.8 29 35-65 177-205 (405)
348 4b4t_K 26S protease regulatory 96.5 0.017 5.9E-07 54.0 10.7 26 40-65 204-229 (428)
349 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0013 4.5E-08 52.6 2.7 22 44-65 9-30 (177)
350 1a7j_A Phosphoribulokinase; tr 96.4 0.00078 2.7E-08 59.8 1.4 24 41-64 4-27 (290)
351 2xb4_A Adenylate kinase; ATP-b 96.4 0.0016 5.4E-08 55.2 3.3 21 44-64 2-22 (223)
352 3cbq_A GTP-binding protein REM 96.4 0.0014 4.6E-08 54.2 2.8 22 44-65 25-46 (195)
353 4b4t_I 26S protease regulatory 96.4 0.014 4.8E-07 54.5 9.8 26 40-65 214-239 (437)
354 2fn4_A P23, RAS-related protei 96.4 0.0013 4.3E-08 52.8 2.4 22 44-65 11-32 (181)
355 1wf3_A GTP-binding protein; GT 96.4 0.0016 5.6E-08 58.0 3.4 22 44-65 9-30 (301)
356 3iby_A Ferrous iron transport 96.4 0.0015 5.2E-08 56.8 3.1 22 44-65 3-24 (256)
357 2f6r_A COA synthase, bifunctio 96.4 0.0015 5E-08 57.7 3.0 22 42-63 75-96 (281)
358 3tlx_A Adenylate kinase 2; str 96.4 0.0017 6E-08 55.8 3.3 25 40-64 27-51 (243)
359 3t5d_A Septin-7; GTP-binding p 96.4 0.0014 5E-08 57.3 2.8 22 44-65 10-31 (274)
360 3t1o_A Gliding protein MGLA; G 96.4 0.0015 5E-08 53.2 2.7 23 44-66 16-38 (198)
361 2hxs_A RAB-26, RAS-related pro 96.4 0.0018 6.1E-08 51.9 3.1 22 44-65 8-29 (178)
362 2oil_A CATX-8, RAS-related pro 96.4 0.0015 5.1E-08 53.4 2.7 22 44-65 27-48 (193)
363 2dby_A GTP-binding protein; GD 96.4 0.0013 4.3E-08 60.6 2.4 22 44-65 3-24 (368)
364 1upt_A ARL1, ADP-ribosylation 96.4 0.0015 5.3E-08 51.8 2.7 21 44-64 9-29 (171)
365 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0016 5.3E-08 52.7 2.7 22 44-65 6-27 (189)
366 1r2q_A RAS-related protein RAB 96.4 0.0016 5.3E-08 51.5 2.7 21 44-64 8-28 (170)
367 1jal_A YCHF protein; nucleotid 96.4 0.0016 5.4E-08 59.7 3.0 23 42-64 2-24 (363)
368 3clv_A RAB5 protein, putative; 96.4 0.0016 5.4E-08 53.1 2.7 22 44-65 9-30 (208)
369 3bc1_A RAS-related protein RAB 96.4 0.0016 5.4E-08 52.8 2.7 21 44-64 13-33 (195)
370 1r8s_A ADP-ribosylation factor 96.3 0.0017 5.9E-08 51.2 2.7 21 44-64 2-22 (164)
371 1ksh_A ARF-like protein 2; sma 96.3 0.0022 7.6E-08 51.9 3.4 25 41-65 17-41 (186)
372 1qvr_A CLPB protein; coiled co 96.3 0.0047 1.6E-07 62.8 6.5 24 43-66 589-612 (854)
373 3con_A GTPase NRAS; structural 96.3 0.0018 6E-08 52.7 2.7 22 44-65 23-44 (190)
374 3ihw_A Centg3; RAS, centaurin, 96.3 0.0018 6.1E-08 52.9 2.7 21 44-64 22-42 (184)
375 3a1s_A Iron(II) transport prot 96.3 0.0022 7.5E-08 55.8 3.4 22 44-65 7-28 (258)
376 1z0f_A RAB14, member RAS oncog 96.3 0.0018 6.2E-08 51.7 2.7 22 44-65 17-38 (179)
377 2a9k_A RAS-related protein RAL 96.3 0.0018 6.2E-08 52.1 2.7 22 44-65 20-41 (187)
378 2qmh_A HPR kinase/phosphorylas 96.3 0.0039 1.3E-07 52.3 4.7 34 30-64 23-56 (205)
379 2xtp_A GTPase IMAP family memb 96.3 0.002 7E-08 55.6 3.2 22 44-65 24-45 (260)
380 2g6b_A RAS-related protein RAB 96.3 0.0019 6.4E-08 51.8 2.7 22 44-65 12-33 (180)
381 2y8e_A RAB-protein 6, GH09086P 96.3 0.0017 5.8E-08 51.9 2.4 21 44-64 16-36 (179)
382 1e4v_A Adenylate kinase; trans 96.3 0.002 6.9E-08 54.0 3.0 21 44-64 2-22 (214)
383 2il1_A RAB12; G-protein, GDP, 96.3 0.0022 7.6E-08 52.5 3.1 22 44-65 28-49 (192)
384 3iev_A GTP-binding protein ERA 96.3 0.0023 7.7E-08 57.2 3.4 22 44-65 12-33 (308)
385 1nrj_B SR-beta, signal recogni 96.3 0.0019 6.4E-08 53.9 2.7 22 44-65 14-35 (218)
386 4dhe_A Probable GTP-binding pr 96.3 0.0013 4.4E-08 55.1 1.7 23 43-65 30-52 (223)
387 1jbk_A CLPB protein; beta barr 96.3 0.0027 9.4E-08 51.0 3.6 26 40-65 41-66 (195)
388 1ko7_A HPR kinase/phosphatase; 96.3 0.0031 1.1E-07 56.6 4.2 34 30-64 133-166 (314)
389 3i8s_A Ferrous iron transport 96.2 0.0022 7.6E-08 56.2 3.2 22 44-65 5-26 (274)
390 3be4_A Adenylate kinase; malar 96.2 0.0023 7.8E-08 53.9 3.1 24 41-64 4-27 (217)
391 3v9p_A DTMP kinase, thymidylat 96.2 0.0022 7.4E-08 55.0 2.9 26 40-65 23-48 (227)
392 2efe_B Small GTP-binding prote 96.2 0.0021 7.2E-08 51.6 2.7 22 44-65 14-35 (181)
393 2h57_A ADP-ribosylation factor 96.2 0.002 6.8E-08 52.5 2.6 24 43-66 22-45 (190)
394 4bas_A ADP-ribosylation factor 96.2 0.0027 9.3E-08 51.8 3.4 23 43-65 18-40 (199)
395 1ltq_A Polynucleotide kinase; 96.2 0.0025 8.5E-08 56.2 3.3 22 43-64 3-24 (301)
396 2bme_A RAB4A, RAS-related prot 96.2 0.0019 6.6E-08 52.1 2.4 22 44-65 12-33 (186)
397 1zbd_A Rabphilin-3A; G protein 96.2 0.0028 9.5E-08 52.1 3.4 22 44-65 10-31 (203)
398 1vg8_A RAS-related protein RAB 96.2 0.0022 7.4E-08 52.8 2.7 22 44-65 10-31 (207)
399 3zvl_A Bifunctional polynucleo 96.2 0.0027 9.4E-08 59.2 3.7 27 38-64 254-280 (416)
400 2bov_A RAla, RAS-related prote 96.2 0.002 6.7E-08 53.0 2.5 21 44-64 16-36 (206)
401 2qu8_A Putative nucleolar GTP- 96.2 0.0027 9.3E-08 53.6 3.4 23 43-65 30-52 (228)
402 2cjw_A GTP-binding protein GEM 96.2 0.0022 7.5E-08 52.8 2.7 21 44-64 8-28 (192)
403 3kkq_A RAS-related protein M-R 96.2 0.0022 7.6E-08 51.7 2.7 22 44-65 20-41 (183)
404 1m7b_A RND3/RHOE small GTP-bin 96.2 0.002 6.8E-08 52.3 2.4 22 44-65 9-30 (184)
405 4edh_A DTMP kinase, thymidylat 96.2 0.0027 9.4E-08 53.7 3.3 27 40-66 4-30 (213)
406 2gf9_A RAS-related protein RAB 96.2 0.0022 7.7E-08 52.2 2.7 22 44-65 24-45 (189)
407 3tkl_A RAS-related protein RAB 96.2 0.0022 7.7E-08 52.2 2.7 22 44-65 18-39 (196)
408 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0028 9.4E-08 60.0 3.5 34 31-65 141-174 (473)
409 3d3q_A TRNA delta(2)-isopenten 96.2 0.0026 9.1E-08 57.7 3.3 22 43-64 8-29 (340)
410 1zj6_A ADP-ribosylation factor 96.2 0.0027 9.3E-08 51.5 3.1 22 43-64 17-38 (187)
411 3lv8_A DTMP kinase, thymidylat 96.2 0.0029 1E-07 54.5 3.4 26 41-66 26-51 (236)
412 2o52_A RAS-related protein RAB 96.1 0.0027 9.4E-08 52.4 3.1 22 44-65 27-48 (200)
413 2gf0_A GTP-binding protein DI- 96.1 0.002 6.8E-08 52.7 2.2 21 44-64 10-30 (199)
414 4b4t_H 26S protease regulatory 96.1 0.0074 2.5E-07 56.9 6.3 27 39-65 240-266 (467)
415 2fg5_A RAB-22B, RAS-related pr 96.1 0.0022 7.5E-08 52.5 2.4 22 44-65 25-46 (192)
416 1ak2_A Adenylate kinase isoenz 96.1 0.0035 1.2E-07 53.3 3.8 24 41-64 15-38 (233)
417 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0025 8.6E-08 51.3 2.7 21 44-64 7-27 (186)
418 2h92_A Cytidylate kinase; ross 96.1 0.003 1E-07 53.0 3.2 23 42-64 3-25 (219)
419 2wsm_A Hydrogenase expression/ 96.1 0.0023 7.9E-08 53.5 2.5 23 43-65 31-53 (221)
420 2h17_A ADP-ribosylation factor 96.1 0.0026 8.8E-08 51.5 2.6 22 44-65 23-44 (181)
421 3oes_A GTPase rhebl1; small GT 96.1 0.0024 8E-08 52.7 2.4 23 43-65 25-47 (201)
422 1z06_A RAS-related protein RAB 96.1 0.0027 9.3E-08 51.7 2.7 21 44-64 22-42 (189)
423 2a5j_A RAS-related protein RAB 96.1 0.0027 9.2E-08 51.8 2.7 22 44-65 23-44 (191)
424 1jwy_B Dynamin A GTPase domain 96.1 0.0029 9.8E-08 56.1 3.1 23 44-66 26-48 (315)
425 2f7s_A C25KG, RAS-related prot 96.1 0.0035 1.2E-07 52.1 3.5 22 44-65 27-48 (217)
426 3dz8_A RAS-related protein RAB 96.1 0.0024 8.3E-08 52.1 2.4 21 44-64 25-45 (191)
427 4tmk_A Protein (thymidylate ki 96.1 0.0036 1.2E-07 53.0 3.4 26 41-66 2-27 (213)
428 3llu_A RAS-related GTP-binding 96.0 0.0032 1.1E-07 51.7 3.1 23 44-66 22-44 (196)
429 3reg_A RHO-like small GTPase; 96.0 0.0028 9.6E-08 51.8 2.7 22 44-65 25-46 (194)
430 2ew1_A RAS-related protein RAB 96.0 0.0025 8.6E-08 53.0 2.4 21 44-64 28-48 (201)
431 2q3h_A RAS homolog gene family 96.0 0.0037 1.3E-07 51.3 3.4 23 43-65 21-43 (201)
432 3bwd_D RAC-like GTP-binding pr 96.0 0.003 1E-07 50.7 2.7 22 43-64 9-30 (182)
433 2j1l_A RHO-related GTP-binding 96.0 0.0034 1.2E-07 52.4 3.2 22 44-65 36-57 (214)
434 1zd9_A ADP-ribosylation factor 96.0 0.003 1E-07 51.5 2.7 21 44-64 24-44 (188)
435 3t5g_A GTP-binding protein RHE 96.0 0.0034 1.1E-07 50.5 3.0 21 44-64 8-28 (181)
436 2atv_A RERG, RAS-like estrogen 96.0 0.0031 1.1E-07 51.7 2.7 22 44-65 30-51 (196)
437 1x3s_A RAS-related protein RAB 96.0 0.0031 1.1E-07 51.2 2.7 22 44-65 17-38 (195)
438 2p65_A Hypothetical protein PF 96.0 0.0033 1.1E-07 50.5 2.9 27 40-66 41-67 (187)
439 2p5s_A RAS and EF-hand domain 96.0 0.0031 1.1E-07 51.8 2.7 24 42-65 28-51 (199)
440 2iwr_A Centaurin gamma 1; ANK 96.0 0.0024 8.3E-08 51.2 2.0 21 44-64 9-29 (178)
441 1njg_A DNA polymerase III subu 96.0 0.0043 1.5E-07 51.7 3.6 44 167-213 125-168 (250)
442 2b6h_A ADP-ribosylation factor 96.0 0.0036 1.2E-07 51.3 3.0 23 42-64 29-51 (192)
443 3cph_A RAS-related protein SEC 96.0 0.0032 1.1E-07 52.0 2.7 23 43-65 21-43 (213)
444 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0029 9.9E-08 52.2 2.4 22 44-65 10-31 (206)
445 3tmk_A Thymidylate kinase; pho 96.0 0.0042 1.4E-07 52.7 3.4 27 40-66 3-29 (216)
446 3exa_A TRNA delta(2)-isopenten 96.0 0.0039 1.3E-07 55.9 3.4 23 42-64 3-25 (322)
447 3crm_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 56.2 3.3 22 43-64 6-27 (323)
448 3cnl_A YLQF, putative uncharac 96.0 0.0036 1.2E-07 54.6 3.1 24 43-66 100-123 (262)
449 2g3y_A GTP-binding protein GEM 95.9 0.0044 1.5E-07 52.2 3.5 22 44-65 39-60 (211)
450 3def_A T7I23.11 protein; chlor 95.9 0.0038 1.3E-07 54.2 3.2 22 44-65 38-59 (262)
451 2fu5_C RAS-related protein RAB 95.9 0.0026 8.7E-08 51.3 1.9 22 44-65 10-31 (183)
452 1gwn_A RHO-related GTP-binding 95.9 0.0031 1E-07 52.6 2.4 22 44-65 30-51 (205)
453 3ld9_A DTMP kinase, thymidylat 95.9 0.0043 1.5E-07 52.9 3.3 27 40-66 19-45 (223)
454 3a8t_A Adenylate isopentenyltr 95.9 0.0041 1.4E-07 56.4 3.3 26 41-66 39-64 (339)
455 3c5c_A RAS-like protein 12; GD 95.9 0.0036 1.2E-07 51.1 2.7 21 44-64 23-43 (187)
456 1sxj_D Activator 1 41 kDa subu 95.9 0.0017 5.9E-08 58.3 0.8 52 168-222 133-185 (353)
457 2ocp_A DGK, deoxyguanosine kin 95.9 0.0039 1.3E-07 53.3 3.1 23 42-64 2-24 (241)
458 1h65_A Chloroplast outer envel 95.9 0.0039 1.3E-07 54.4 3.1 22 44-65 41-62 (270)
459 2fv8_A H6, RHO-related GTP-bin 95.9 0.0032 1.1E-07 52.2 2.4 22 44-65 27-48 (207)
460 2aka_B Dynamin-1; fusion prote 95.9 0.0037 1.3E-07 54.9 2.9 23 44-66 28-50 (299)
461 2fh5_B SR-beta, signal recogni 95.9 0.0036 1.2E-07 52.0 2.7 22 44-65 9-30 (214)
462 3umf_A Adenylate kinase; rossm 95.9 0.0036 1.2E-07 53.2 2.6 29 36-64 23-51 (217)
463 4dcu_A GTP-binding protein ENG 95.8 0.0035 1.2E-07 59.1 2.7 21 44-64 25-45 (456)
464 2gco_A H9, RHO-related GTP-bin 95.8 0.0038 1.3E-07 51.5 2.4 22 44-65 27-48 (201)
465 4djt_A GTP-binding nuclear pro 95.8 0.0023 8E-08 53.3 1.1 22 44-65 13-34 (218)
466 2r62_A Cell division protease 95.8 0.0013 4.4E-08 57.1 -0.6 28 36-65 40-67 (268)
467 2atx_A Small GTP binding prote 95.7 0.0043 1.5E-07 50.6 2.4 22 44-65 20-41 (194)
468 1p5z_B DCK, deoxycytidine kina 95.7 0.0033 1.1E-07 54.5 1.8 27 39-65 21-47 (263)
469 2hf9_A Probable hydrogenase ni 95.7 0.0051 1.8E-07 51.5 3.0 22 43-64 39-60 (226)
470 2x77_A ADP-ribosylation factor 95.7 0.0038 1.3E-07 50.7 2.1 22 43-64 23-44 (189)
471 3foz_A TRNA delta(2)-isopenten 95.6 0.0063 2.2E-07 54.5 3.3 23 42-64 10-32 (316)
472 2yc2_C IFT27, small RAB-relate 95.6 0.0025 8.6E-08 52.3 0.6 22 44-65 22-43 (208)
473 3n70_A Transport activator; si 95.6 0.007 2.4E-07 47.5 3.2 26 40-65 22-47 (145)
474 2hup_A RAS-related protein RAB 95.6 0.0052 1.8E-07 50.8 2.4 21 44-64 31-51 (201)
475 3cpj_B GTP-binding protein YPT 95.6 0.0054 1.9E-07 51.5 2.5 22 44-65 15-36 (223)
476 4gzl_A RAS-related C3 botulinu 95.5 0.0054 1.9E-07 50.8 2.4 22 43-64 31-52 (204)
477 3q3j_B RHO-related GTP-binding 95.5 0.0062 2.1E-07 50.9 2.7 21 44-64 29-49 (214)
478 3sr0_A Adenylate kinase; phosp 95.5 0.0077 2.6E-07 50.6 3.3 21 44-64 2-22 (206)
479 2orv_A Thymidine kinase; TP4A 95.5 0.062 2.1E-06 45.9 8.9 52 167-225 89-150 (234)
480 2orw_A Thymidine kinase; TMTK, 95.5 0.0084 2.9E-07 49.3 3.4 54 167-226 75-138 (184)
481 2v3c_C SRP54, signal recogniti 95.5 0.0036 1.2E-07 58.7 1.2 31 37-67 92-124 (432)
482 2j9r_A Thymidine kinase; TK1, 95.4 0.046 1.6E-06 46.1 7.8 52 168-225 101-162 (214)
483 4hlc_A DTMP kinase, thymidylat 95.4 0.0084 2.9E-07 50.3 3.2 25 42-66 2-26 (205)
484 3l0o_A Transcription terminati 95.4 0.0051 1.8E-07 56.8 2.0 32 34-65 167-198 (427)
485 3tqf_A HPR(Ser) kinase; transf 95.3 0.013 4.4E-07 48.0 3.9 33 30-63 5-37 (181)
486 2j0v_A RAC-like GTP-binding pr 95.3 0.0071 2.4E-07 50.1 2.4 21 44-64 11-31 (212)
487 2chg_A Replication factor C sm 95.3 0.0091 3.1E-07 49.1 3.0 43 167-212 101-143 (226)
488 1puj_A YLQF, conserved hypothe 95.3 0.0094 3.2E-07 52.6 3.1 24 43-66 121-144 (282)
489 1wxq_A GTP-binding protein; st 95.3 0.0092 3.2E-07 55.3 3.2 22 44-65 2-23 (397)
490 3syl_A Protein CBBX; photosynt 95.2 0.011 3.7E-07 52.1 3.5 27 40-66 65-91 (309)
491 3eph_A TRNA isopentenyltransfe 95.2 0.0094 3.2E-07 55.3 3.0 22 43-64 3-24 (409)
492 2hjg_A GTP-binding protein ENG 95.2 0.0085 2.9E-07 56.1 2.7 22 44-65 5-26 (436)
493 3th5_A RAS-related C3 botulinu 94.0 0.0041 1.4E-07 51.2 0.0 23 42-64 30-52 (204)
494 3l0i_B RAS-related protein RAB 95.0 0.0027 9.4E-08 52.2 -1.1 22 44-65 35-56 (199)
495 3p32_A Probable GTPase RV1496/ 95.0 0.013 4.5E-07 53.2 3.3 26 41-66 78-103 (355)
496 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.015 5.1E-07 52.1 3.6 26 40-65 43-68 (322)
497 1d2n_A N-ethylmaleimide-sensit 95.0 0.013 4.3E-07 50.9 3.0 25 40-64 62-86 (272)
498 1ofh_A ATP-dependent HSL prote 94.9 0.014 4.9E-07 51.1 3.3 24 42-65 50-73 (310)
499 3r7w_A Gtpase1, GTP-binding pr 94.9 0.013 4.3E-07 52.2 3.0 23 43-65 4-26 (307)
500 3hws_A ATP-dependent CLP prote 94.9 0.014 4.7E-07 53.0 3.3 25 41-65 50-74 (363)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9.7e-53 Score=376.59 Aligned_cols=220 Identities=22% Similarity=0.248 Sum_probs=175.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++|+++||+++|++ ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 5 ~~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~-~G~I~~~G~~i~~~~~---- 77 (275)
T 3gfo_A 5 DYILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRK---- 77 (275)
T ss_dssp CEEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCCSHH----
T ss_pred CcEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeEEEECCEECCcccc----
Confidence 357999999999975 245999999999999999999999999999999999999886 8999999876421000
Q ss_pred CCcccccccccccccccCccc--ccccccHH-HHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
....++..++++++.+ .+...+.. ++.++. .... .+++.++++.+++. .++++.+|||||||||
T Consensus 78 -----~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 78 -----GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 152 (275)
T ss_dssp -----HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred -----cHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 0001223344444422 12234443 333321 1112 23466788899985 5789999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||+||||++++..+||||++|++|+++..|+++++.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999987445999999999999999999999999999999999999987
Q ss_pred Hhh
Q 022663 240 ELR 242 (294)
Q Consensus 240 ~~~ 242 (294)
...
T Consensus 233 ~~~ 235 (275)
T 3gfo_A 233 AEK 235 (275)
T ss_dssp HHH
T ss_pred cCH
Confidence 643
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-52 Score=373.59 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=176.7
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
++++|+++||++.|++ +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 8 ~~~~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~--- 80 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLGQNLNSWQP--- 80 (266)
T ss_dssp CCCEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS-SCEEEETTEETTTSCH---
T ss_pred CcceEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCCH---
Confidence 3468999999999975 57999999999999999999999999999999999999887 8999999876432110
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHH-hhcCC----CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE----GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..+...++++++ ..++..++..++ .++.. ....++..++++.+++. .++++.+|||||||||+|
T Consensus 81 --------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~i 152 (266)
T 4g1u_C 81 --------KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQL 152 (266)
T ss_dssp --------HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHH
T ss_pred --------HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH
Confidence 011122334433 223344555443 33321 12244567889999985 578899999999999999
Q ss_pred HHHHcc------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 162 CMGLLH------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 162 AraL~~------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+. +|++|||||||+|||+.++..++++|++++++.++|||+||||++++..+||||++|++|+++..|++
T Consensus 153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTP 232 (266)
T ss_dssp HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999 99999999999999999999999999998776568999999999999999999999999999999999
Q ss_pred HHHHH
Q 022663 236 AELDE 240 (294)
Q Consensus 236 ~~~~~ 240 (294)
+++.+
T Consensus 233 ~~~~~ 237 (266)
T 4g1u_C 233 EEVLN 237 (266)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 98764
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.1e-52 Score=383.92 Aligned_cols=218 Identities=22% Similarity=0.359 Sum_probs=181.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ ..+|+||||+|++||+++|+||||||||||||+|+|++.|+ +|.|.++|.+...... .
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~G~I~i~G~~i~~~~~-----~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKNT-----N 74 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEESSSC-----B
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEECccccc-----c
Confidence 7999999999975 57999999999999999999999999999999999999887 9999999876522100 0
Q ss_pred cccccccccccccccCc-ccccccccHHH-HhhcCCC--C-c---HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEG--S-D---PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~-~---~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
. ....+.++++++ ..+++.+++.+ +.++... . . .+++.++++.+++. .++++.+|||||||||+||
T Consensus 75 ---~-~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 75 ---L-PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp ---C-CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ---c-chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 0 012234555554 44666677654 4454321 1 1 23567888999985 6889999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||+.+|++|||||||++||+..+.++++.|.++.++.|.|+|+||||++++..+||||++|++|+++..|+++++....
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999999888887778999999999999999999999999999999999999987654
Q ss_pred h
Q 022663 243 N 243 (294)
Q Consensus 243 ~ 243 (294)
.
T Consensus 231 ~ 231 (359)
T 3fvq_A 231 A 231 (359)
T ss_dssp S
T ss_pred c
Confidence 3
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.5e-52 Score=387.16 Aligned_cols=225 Identities=22% Similarity=0.264 Sum_probs=180.6
Q ss_pred CcccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccc
Q 022663 10 KLNSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~ 88 (294)
.+++|+++||+++|++.. ...+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+........
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~-~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESE 99 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECSSCCHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHH
Confidence 356899999999996421 135899999999999999999999999999999999999887 999999987653211000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
. ...++.++++++ ..+++.+++.++ .++. .... .+++.++++.+++. .++++.+||||||||
T Consensus 100 ----~----~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 100 ----L----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp ----H----HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred ----H----HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence 0 011234555554 345555665443 3321 1222 23467788999985 588999999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||++||+.++..++++|+++.++.|.|||+||||++++.++||||++|++|++++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999999877799999999999999999999999999999999999998
Q ss_pred HHhhh
Q 022663 239 DELRN 243 (294)
Q Consensus 239 ~~~~~ 243 (294)
+....
T Consensus 252 ~~~p~ 256 (366)
T 3tui_C 252 FSHPK 256 (366)
T ss_dssp HSSCC
T ss_pred HhCCC
Confidence 86543
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.5e-52 Score=386.84 Aligned_cols=215 Identities=25% Similarity=0.337 Sum_probs=180.3
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++ ..+|+||||+|++||+++|+||||||||||||+|+|++.|+ +|.|.++|.+......
T Consensus 2 ~~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~G~I~i~G~~~~~~~~----- 72 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT-SGDLFIGEKRMNDTPP----- 72 (381)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTCCG-----
T ss_pred CEEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC-CeEEEECCEECCCCCH-----
Confidence 36999999999975 57999999999999999999999999999999999999887 9999998876432110
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l 161 (294)
..+.++++++ ..+++.++..++ .++. .... .+++.++++.+++. .++++.+|||||||||+|
T Consensus 73 --------~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 --------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 144 (381)
T ss_dssp --------GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --------HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHH
Confidence 1123444444 445666666544 3332 1222 23567788999985 688999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||||++|++|+++..|+++++...
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999999999999999877799999999999999999999999999999999999998765
Q ss_pred hh
Q 022663 242 RN 243 (294)
Q Consensus 242 ~~ 243 (294)
+.
T Consensus 225 p~ 226 (381)
T 3rlf_A 225 PA 226 (381)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-51 Score=364.85 Aligned_cols=215 Identities=22% Similarity=0.313 Sum_probs=173.9
Q ss_pred CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
.+++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~---- 83 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEP---- 83 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTCH----
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCccH----
Confidence 4789999999999965 57999999999999999999999999999999999998886 899999886542110
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
..++..++++++ ..++..++..+++ +.. .... .+++.++++.+++. .++++.+|||||||||
T Consensus 84 --------~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 155 (256)
T 1vpl_A 84 --------HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL 155 (256)
T ss_dssp --------HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH
T ss_pred --------HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH
Confidence 011223444444 2344555554433 211 1111 23456788889985 5788999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||+||||++++..+||++++|++|+++..|+++++.
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999864 4899999999999999999999999999999999998886
Q ss_pred Hh
Q 022663 240 EL 241 (294)
Q Consensus 240 ~~ 241 (294)
+.
T Consensus 235 ~~ 236 (256)
T 1vpl_A 235 ER 236 (256)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.8e-51 Score=364.12 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=174.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.. ... .
T Consensus 23 ~~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~i~-~~~----~ 93 (263)
T 2olj_A 23 QMIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLK-AKD----T 93 (263)
T ss_dssp CSEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEESS-STT----C
T ss_pred heEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCEECC-Ccc----c
Confidence 47999999999965 57999999999999999999999999999999999999886 899999886542 000 0
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.. ..++..++++++ ..+++.++..++ .++ ..... .+++.++++.+++. .++++.+|||||||||+
T Consensus 94 ~~----~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 94 NL----NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp CH----HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred cH----HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 00 011223445444 334455555443 332 11221 23456788999985 57889999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||+|||+.++..++++|.+++++ |+|||+||||++++..+||+|++|++|+++..|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999998765 9999999999999999999999999999999999998865
Q ss_pred h
Q 022663 241 L 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 249 ~ 249 (263)
T 2olj_A 249 R 249 (263)
T ss_dssp S
T ss_pred C
Confidence 4
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.5e-52 Score=364.17 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=167.9
Q ss_pred cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+|+++||+++|++.. ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~~---- 75 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT-EGEVYIDNIKTNDLDDD---- 75 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHH----
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEEcccCCHH----
Confidence 489999999996421 135999999999999999999999999999999999999887 99999988754221100
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC--C---CCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--E---GSD----PVRRERLIELLDID---LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~---~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq 157 (294)
. .....+..++++++ ..+++.++..++ .++. . ... .+++.++++.+++. .++++.+|||||||
T Consensus 76 ~---~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q 152 (235)
T 3tif_A 76 E---LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152 (235)
T ss_dssp H---HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred H---HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH
Confidence 0 00001123555554 344555565443 3321 1 111 23345678888874 37889999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|+|||+||||++.+ .+||+|++|++|+++..+++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999998766699999999999965 7999999999999999888766
Q ss_pred HH
Q 022663 238 LD 239 (294)
Q Consensus 238 ~~ 239 (294)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-51 Score=365.90 Aligned_cols=212 Identities=16% Similarity=0.246 Sum_probs=171.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+++|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 5 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~--- 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPA--- 77 (257)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHH---
T ss_pred CcEEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHH---
Confidence 357999999999975 57999999999999999999999999999999999999886 89999988654211000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC----C-----------Cc----HHHHHHHHHHcCCC--cccc
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE----G-----------SD----PVRRERLIELLDID--LQWR 147 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~-----------~~----~~~~~~~l~~l~l~--~~~~ 147 (294)
...+..++++++ ..+++.++..++ .++.. . .. .+++.++++.+++. .+++
T Consensus 78 -------~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 150 (257)
T 1g6h_A 78 -------ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150 (257)
T ss_dssp -------HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred -------HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC
Confidence 001223444444 234445555443 33211 1 11 23456788889985 5789
Q ss_pred cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++ |+|||+||||++++..+||+|++|++|
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G 229 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNG 229 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999998754 899999999999999999999999999
Q ss_pred eEEecccHHH
Q 022663 228 ELRRAEKLAE 237 (294)
Q Consensus 228 ~i~~~g~~~~ 237 (294)
+++..|++++
T Consensus 230 ~i~~~g~~~~ 239 (257)
T 1g6h_A 230 QIIAEGRGEE 239 (257)
T ss_dssp EEEEEEESHH
T ss_pred EEEEEeCHHH
Confidence 9999998887
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-51 Score=365.43 Aligned_cols=223 Identities=20% Similarity=0.227 Sum_probs=174.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....... ..
T Consensus 5 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~--~~ 78 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDK--DG 78 (262)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCEEECT--TS
T ss_pred ceEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEccccccc--cc
Confidence 47999999999965 57999999999999999999999999999999999999886 89999988654210000 00
Q ss_pred ---Cccc-ccccccccccccCc-ccccccccHHHH-hhc---CCCCc----HHHHHHHHHHcCCC---cccccccCCHHH
Q 022663 92 ---DLSY-LGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG---VEGSD----PVRRERLIELLDID---LQWRMHKVSDGQ 155 (294)
Q Consensus 92 ---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq 155 (294)
.... ....++..++++++ ..+++.++..++ .++ ..... .+++.++++.+++. .++++.+|||||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 0000 00011233455544 334555555443 331 11221 23456788999984 478899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.+++++ |.|||+||||++++..+||+|++|++|+++..|++
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 237 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998765 89999999999999999999999999999999999
Q ss_pred HHHHHh
Q 022663 236 AELDEL 241 (294)
Q Consensus 236 ~~~~~~ 241 (294)
+++...
T Consensus 238 ~~~~~~ 243 (262)
T 1b0u_A 238 EQVFGN 243 (262)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 988754
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6e-51 Score=376.89 Aligned_cols=213 Identities=25% Similarity=0.249 Sum_probs=178.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~------- 71 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT-SGEIYFDDVLVNDIP------- 71 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC-ccEEEECCEECCCCC-------
Confidence 6999999999965 57999999999999999999999999999999999999887 899999887542110
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
...+.++++++ ..+++.++..++ .++.. ... .+++.++++.+++. .++++.+|||||||||+||
T Consensus 72 ------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalA 145 (359)
T 2yyz_A 72 ------PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALA 145 (359)
T ss_dssp ------GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 01223455544 345666666544 44432 111 23567889999985 5889999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+..
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999999987767999999999999999999999999999999999999987654
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.8e-51 Score=376.73 Aligned_cols=215 Identities=23% Similarity=0.320 Sum_probs=178.8
Q ss_pred cccEEEcceEEEc-CCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 11 LNSIKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 11 ~~~l~~~~ls~~y-~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
.++|+++||+++| ++ .++|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....
T Consensus 12 ~~~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~---- 83 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLP---- 83 (355)
T ss_dssp CEEEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTCC----
T ss_pred CceEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECCcCC----
Confidence 4689999999999 64 57999999999999999999999999999999999999887 899999887542110
Q ss_pred cCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV 159 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv 159 (294)
..++.++++++ ..+++.++..++ .++. .... .+++.++++.+++. .++++.+|||||||||
T Consensus 84 ---------~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv 154 (355)
T 1z47_A 84 ---------PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV 154 (355)
T ss_dssp ---------GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred ---------hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence 01223444444 345566665443 3332 1211 23567788999985 5889999999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
+|||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999987777999999999999999999999999999999999999987
Q ss_pred Hhh
Q 022663 240 ELR 242 (294)
Q Consensus 240 ~~~ 242 (294)
+.+
T Consensus 235 ~~p 237 (355)
T 1z47_A 235 EKP 237 (355)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.2e-51 Score=376.59 Aligned_cols=218 Identities=22% Similarity=0.290 Sum_probs=179.1
Q ss_pred cEEEcceEEEcCCCCCCC--ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPP--LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~--iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+......
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~---- 74 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGK---- 74 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS-EEEEEETTEEEEETTE----
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECccccc----
Confidence 6999999999975 56 999999999999999999999999999999999999887 8999998875422000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.. . ...++.++++++ ..+++.++..++ .++.. ... .+++.++++.+++. .++++.+|||||||||+
T Consensus 75 --~~-~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 75 --LI-V-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp --ES-S-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred --cc-C-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 00 0 011234555544 345666666544 44432 112 23467788999985 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999877679999999999999999999999999999999999999876
Q ss_pred hh
Q 022663 241 LR 242 (294)
Q Consensus 241 ~~ 242 (294)
.+
T Consensus 231 ~p 232 (353)
T 1oxx_K 231 NP 232 (353)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-51 Score=358.05 Aligned_cols=214 Identities=18% Similarity=0.226 Sum_probs=171.9
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 5 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~---- 76 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDITNKPAH---- 76 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHH----
T ss_pred ceEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCCHH----
Confidence 47999999999975 57999999999999999999999999999999999999886 89999988654211000
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC-CC--Cc--HHHHHHHHHHcC-CC--cccccccCCHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV-EG--SD--PVRRERLIELLD-ID--LQWRMHKVSDGQRRRVQI 161 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~--~~--~~~~~~~l~~l~-l~--~~~~~~~LSgGqkqRv~l 161 (294)
...+..++++++ ..++..++..++ .++. .. .. .+..+++++.++ +. .++++.+|||||||||+|
T Consensus 77 ------~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 77 ------VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp ------HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH
T ss_pred ------HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHH
Confidence 001112444444 334455565443 3332 11 11 234566778884 63 578899999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
||||+.+|++|||||||+|||+.++..++++|.++.+ .|+|||+||||++++..+||+|++|++|+++..|+++++.+
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999999999865 58999999999999999999999999999999999888754
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.3e-51 Score=377.13 Aligned_cols=213 Identities=25% Similarity=0.296 Sum_probs=177.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~------- 71 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTELP------- 71 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-ceEEEECCEECCcCC-------
Confidence 6999999999965 57999999999999999999999999999999999999887 899999887542210
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
...+.++++++ ..+++.++..++ .++. .... .+++.++++.+++. .++++.+|||||||||+||
T Consensus 72 ------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 145 (362)
T 2it1_A 72 ------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIA 145 (362)
T ss_dssp ------GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred ------HhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHH
Confidence 01123444444 345666665443 3432 1111 23467788999985 5889999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++...+
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999999987767999999999999999999999999999999999999987654
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.2e-51 Score=356.80 Aligned_cols=209 Identities=22% Similarity=0.270 Sum_probs=166.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......
T Consensus 3 ~~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~---- 74 (224)
T 2pcj_A 3 EILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGKVFLEGKEVDYTNEK---- 74 (224)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS-EEEEEETTEECCSSCHH----
T ss_pred cEEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHH----
Confidence 47999999999975 57999999999999999999999999999999999999886 89999988654211000
Q ss_pred Ccccccccc-cccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 92 DLSYLGGSW-SKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
.. ..+ ...++++++ ..+++.++..+++ ++. .... .+++.++++.+++. .++++.+|||||||||+
T Consensus 75 ~~----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 75 EL----SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HH----HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH
T ss_pred HH----HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 00 001 123444444 3344555554432 221 1111 23456788889885 57899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|||||+.+|++|||||||+|||+.++..++++|.+++++ |.|||+||||++++ .+||++++|++|+++..|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999999998765 99999999999988 7999999999999998775
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-50 Score=354.22 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=171.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....
T Consensus 1 ml~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~------- 66 (240)
T 2onk_A 1 MFLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLP------- 66 (240)
T ss_dssp CCEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred CEEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCc-------
Confidence 4889999999953 59999999999 999999999999999999999999886 899999886542100
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hcCCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra 164 (294)
..+..++++++ ..+++.++..+++ ++.... ..+++.++++.+++. .++++.+|||||||||+||||
T Consensus 67 ------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 67 ------PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140 (240)
T ss_dssp ------TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHH
T ss_pred ------hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 01223444444 3345555655443 332211 123456788888885 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|+.+|++|||||||+|||+.++..++++|.+++++.|+|||+||||++++..+||++++|++|+++..|+++++.+..
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999987666899999999999999999999999999999999999886543
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-50 Score=375.86 Aligned_cols=215 Identities=22% Similarity=0.244 Sum_probs=176.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
|.+|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....
T Consensus 9 M~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~----- 79 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLP----- 79 (372)
T ss_dssp CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-----
T ss_pred eeeEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-ceEEEECCEECCCCC-----
Confidence 346999999999965 57999999999999999999999999999999999999887 899999887542110
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~ 160 (294)
...+.++++++ ..+++.++..++ .++.. ... .+++.++++.+++. .++++.+|||||||||+
T Consensus 80 --------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva 151 (372)
T 1v43_A 80 --------PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA 151 (372)
T ss_dssp --------GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHH
T ss_pred --------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 01123444444 345666666544 44432 112 23467788999985 58899999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
|||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++..
T Consensus 152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999877679999999999999999999999999999999999999876
Q ss_pred hh
Q 022663 241 LR 242 (294)
Q Consensus 241 ~~ 242 (294)
..
T Consensus 232 ~p 233 (372)
T 1v43_A 232 RP 233 (372)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-50 Score=377.27 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=178.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+...... .
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~~-----~ 73 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGDKLVADPEK-----G 73 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEEEGGG-----T
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC-ccEEEECCEECccccc-----c
Confidence 6999999999965 57999999999999999999999999999999999999887 8999998876422000 0
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
.. .. ...+.++++++ ..+++.++..++ .++. .... .+++.++++.+++. .++++.+|||||||||+||
T Consensus 74 ~~-~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 74 IF-VP-PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EE-CC-GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred cc-CC-HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 00 00 01234555554 345666666544 3432 1211 23467788999985 5889999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
|||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++....
T Consensus 152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999999987767999999999999999999999999999999999999987653
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-50 Score=372.21 Aligned_cols=212 Identities=21% Similarity=0.277 Sum_probs=177.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ + +|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....
T Consensus 1 ml~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~------- 68 (348)
T 3d31_A 1 MIEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLS------- 68 (348)
T ss_dssp CEEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred CEEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCEECCCCc-------
Confidence 4899999999965 5 999999999999999999999999999999999999887 899999887542100
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcCC---CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE---GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
..++.++++++ ..+++.++..++ .++.. ....+++.++++.+++. .++++.+|||||||||+|||||
T Consensus 69 ------~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL 142 (348)
T 3d31_A 69 ------PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL 142 (348)
T ss_dssp ------HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT
T ss_pred ------hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 11233455554 345666665543 33321 11225677889999985 5889999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR 242 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 242 (294)
+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+..
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999999987777999999999999999999999999999999999999987654
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.4e-51 Score=364.66 Aligned_cols=214 Identities=22% Similarity=0.330 Sum_probs=170.7
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc--cccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF--HDTQLV 88 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~--~~~~~~ 88 (294)
.++|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.. ....
T Consensus 19 ~~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~~~~-- 92 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT-SGTVNLFGKMPGKVGYSA-- 92 (279)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTBCCC---CCH--
T ss_pred CceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CeEEEECCEEcccccCCH--
Confidence 457999999999975 57999999999999999999999999999999999999887 899999887542 1000
Q ss_pred ccCCcccccccccccccccCccc---ccccccHHHH-hhcCC-------CCc---HHHHHHHHHHcCCC--cccccccCC
Q 022663 89 CSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHM-IFGVE-------GSD---PVRRERLIELLDID--LQWRMHKVS 152 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~-------~~~---~~~~~~~l~~l~l~--~~~~~~~LS 152 (294)
..++..++++++.+ +...++..++ .++.. ... .+++.++++.+++. .++++.+||
T Consensus 93 ---------~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 163 (279)
T 2ihy_A 93 ---------ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS 163 (279)
T ss_dssp ---------HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred ---------HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCC
Confidence 01112233333311 1122354443 33211 011 23456788889985 578999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE--EEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI--VYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tv--iivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
|||||||+|||||+.+|++|||||||+|||+.++..++++|.++.++ |+|| |+||||++++..+||+|++|++|+++
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765 8999 99999999999999999999999999
Q ss_pred ecccHHHHHH
Q 022663 231 RAEKLAELDE 240 (294)
Q Consensus 231 ~~g~~~~~~~ 240 (294)
..|+++++.+
T Consensus 243 ~~g~~~~~~~ 252 (279)
T 2ihy_A 243 QQGAVEDILT 252 (279)
T ss_dssp EEEEHHHHCS
T ss_pred EECCHHHHhc
Confidence 9999888754
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-49 Score=354.47 Aligned_cols=214 Identities=22% Similarity=0.258 Sum_probs=172.7
Q ss_pred cEEEcceEEEcCCCCC--CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDK--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~--~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+|+++||+++|+.... +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~------ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERKKGY------ 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCHH------
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEECchH------
Confidence 6999999999962111 36999999999999999999999999999999999998886 89999988653210
Q ss_pred CCcccccccccccccccCccc--ccccccHHH-HhhcCC----C-CcHHHHHHHHHHcCCC----cccccccCCHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGVE----G-SDPVRRERLIELLDID----LQWRMHKVSDGQRRR 158 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~----~-~~~~~~~~~l~~l~l~----~~~~~~~LSgGqkqR 158 (294)
.++..++++++.+ .+...+..+ +.++.. . ...+++.++++.+++. .++++.+||||||||
T Consensus 75 --------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qR 146 (266)
T 2yz2_A 75 --------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRR 146 (266)
T ss_dssp --------HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHH
T ss_pred --------HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHH
Confidence 1122234443321 223345443 333321 1 1234567889999986 478899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..++++|.++.++ |.|||+||||++++..+||++++|++|+++..|+++++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998765 89999999999999999999999999999999999888
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
....
T Consensus 226 ~~~~ 229 (266)
T 2yz2_A 226 LEKY 229 (266)
T ss_dssp HHHS
T ss_pred hcCc
Confidence 6543
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-49 Score=351.87 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=163.0
Q ss_pred cEEEcceEEEcC-CCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYE-GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~-~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+|+++||+++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+. .
T Consensus 4 ~l~i~~l~~~y~~~---~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~-------------~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQAE---NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIEVY-------------Q 66 (253)
T ss_dssp EEEEEEEEEEETTT---TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS-EEEEEEC-------------S
T ss_pred eEEEeeEEEEeCCC---CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEe-------------c
Confidence 799999999997 4 57999999999999999999999999999999999998886 7777521 1
Q ss_pred CcccccccccccccccCcccccccccHHH-HhhcCC---C-----C--cHHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVE---G-----S--DPVRRERLIELLDID--LQWRMHKVSDGQRRR 158 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~-----~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR 158 (294)
.+.++++. ..++..++..+ +.++.. . . ..+++.++++.+++. .++++.+||||||||
T Consensus 67 ~i~~v~q~----------~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 136 (253)
T 2nq2_C 67 SIGFVPQF----------FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQL 136 (253)
T ss_dssp CEEEECSC----------CCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred cEEEEcCC----------CccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHH
Confidence 23333221 12223344433 323210 0 1 123457788889985 578899999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|+|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||+||||++++..+||++++|++|+ +..|+++++
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999999999876558999999999999999999999999999 889998887
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
..
T Consensus 216 ~~ 217 (253)
T 2nq2_C 216 LT 217 (253)
T ss_dssp CC
T ss_pred hC
Confidence 53
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.1e-49 Score=353.50 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=167.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++...+++|++|||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~i~~~~~----- 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDH----- 88 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGBCH-----
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEcccCCH-----
Confidence 4799999999996411246999999999999999999999999999999999999886 8999998875421100
Q ss_pred CcccccccccccccccCc-ccccccccHHH-HhhcCCCCcH-HH---------HHHHHHHc--CCC--cccccccCCHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGSDP-VR---------RERLIELL--DID--LQWRMHKVSDGQ 155 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~---------~~~~l~~l--~l~--~~~~~~~LSgGq 155 (294)
..++..++++++ ..++. .+..+ +.++...... .. ..++++.+ ++. .++++.+|||||
T Consensus 89 ------~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq 161 (271)
T 2ixe_A 89 ------HYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQ 161 (271)
T ss_dssp ------HHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHH
T ss_pred ------HHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHH
Confidence 012233455544 23333 35544 4343221111 11 12345555 443 467899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||+||||++++.. ||+|++|++|+++..|++
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998765458999999999999875 999999999999999999
Q ss_pred HHHHHh
Q 022663 236 AELDEL 241 (294)
Q Consensus 236 ~~~~~~ 241 (294)
+++...
T Consensus 241 ~~l~~~ 246 (271)
T 2ixe_A 241 LQLMER 246 (271)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888654
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.1e-49 Score=346.80 Aligned_cols=212 Identities=22% Similarity=0.264 Sum_probs=166.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
-|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~i~g~~~~~~~~------ 78 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADP------ 78 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTSCH------
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCH------
Confidence 58999999999311 257999999999999999999999999999999999999887 8999998865421100
Q ss_pred cccccccccccccccCc-ccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR 157 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq 157 (294)
..++..++++++ ..++. .+..++ .++......+++.++++.+++. .++++.+|||||||
T Consensus 79 -----~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 152 (247)
T 2ff7_A 79 -----NWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 152 (247)
T ss_dssp -----HHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH
T ss_pred -----HHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH
Confidence 012233455544 23333 355444 3432223344455666666652 23456899999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||++||+.++..++++|.++ + .|+|||+||||++.+. .||+|++|++|+++..|++++
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999988 3 3899999999999886 499999999999999999998
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+...
T Consensus 230 l~~~ 233 (247)
T 2ff7_A 230 LLSE 233 (247)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 8654
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9e-49 Score=355.41 Aligned_cols=213 Identities=23% Similarity=0.317 Sum_probs=169.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+|+|++ ..++|+||||+|++||+++|+||||||||||+++|+|++.|+ +|.|.++|.+......
T Consensus 52 ~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~G~~i~~~~~----- 123 (306)
T 3nh6_A 52 GRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDISQVTQ----- 123 (306)
T ss_dssp CCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS-EEEEEETTEETTSBCH-----
T ss_pred CeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CcEEEECCEEcccCCH-----
Confidence 35999999999964 257999999999999999999999999999999999999887 9999999876432110
Q ss_pred CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq 157 (294)
..++..++++++. .++.....+++.++......+...++++.+++. .++++.+|||||||
T Consensus 124 ------~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQ 197 (306)
T 3nh6_A 124 ------ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ 197 (306)
T ss_dssp ------HHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHH
T ss_pred ------HHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHH
Confidence 1223445555553 334332344555554333344444555544431 24566799999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|+||||||||++||+.++..+++.|.++. .++|+|+||||++.+.. ||+|++|++|+|++.|++++
T Consensus 198 RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999875 37899999999999986 99999999999999999999
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 275 l~~~ 278 (306)
T 3nh6_A 275 LLSR 278 (306)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-48 Score=344.68 Aligned_cols=211 Identities=19% Similarity=0.289 Sum_probs=166.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
||+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 1 ml~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~------ 71 (243)
T 1mv5_A 1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISL------ 71 (243)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSC------
T ss_pred CEEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCH------
Confidence 4899999999942 257999999999999999999999999999999999999886 8999998865421110
Q ss_pred cccccccccccccccCcc-cccccccHHHH-hhcC-CCCcHHHHHHHHHHcCCC--c-----------ccccccCCHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGV-EGSDPVRRERLIELLDID--L-----------QWRMHKVSDGQR 156 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~l~l~--~-----------~~~~~~LSgGqk 156 (294)
..++..++++++. .++. .+..++ .++. .....+...++++.+++. . ++++.+||||||
T Consensus 72 -----~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 72 -----ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp -----SCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred -----HHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 0112234444442 2333 355444 3431 223344566777777653 1 245679999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|++|||||||+|||+.++..+++.|.++. + |+|||+||||++++. .||+|++|++|+++..|+++
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 222 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHN 222 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 3 899999999999886 59999999999999999998
Q ss_pred HHHHh
Q 022663 237 ELDEL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
++...
T Consensus 223 ~~~~~ 227 (243)
T 1mv5_A 223 ELVAT 227 (243)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87653
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.3e-49 Score=348.83 Aligned_cols=209 Identities=22% Similarity=0.210 Sum_probs=160.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--cccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~--~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ +.|+ +|.+.++|.+........
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~~~~~~~~~-- 76 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDE-- 76 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEECTTSCHHH--
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEECCCCCHHH--
Confidence 6999999999975 5799999999999999999999999999999999998 5665 899999886542110000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHHh-hcC---CC--Cc----HHHHHHHHHHcCCC---ccccccc-CCHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EG--SD----PVRRERLIELLDID---LQWRMHK-VSDGQ 155 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~--~~----~~~~~~~l~~l~l~---~~~~~~~-LSgGq 155 (294)
..+..++++++ ..+++.++..+++ +.. .. .. .++..++++.+++. .++++.+ |||||
T Consensus 77 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 148 (250)
T 2d2e_A 77 --------RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGE 148 (250)
T ss_dssp --------HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----H
T ss_pred --------HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence 00112333333 2344455554432 211 01 11 23456788888983 4778898 99999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEEeccc
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELRRAEK 234 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~~g~ 234 (294)
||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|+|||+||||++++..+ ||+|++|++|+++..|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999998754 589999999999999988 59999999999999998
Q ss_pred HH
Q 022663 235 LA 236 (294)
Q Consensus 235 ~~ 236 (294)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.6e-48 Score=342.43 Aligned_cols=207 Identities=20% Similarity=0.200 Sum_probs=169.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ |.+.++|.+......
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~------ 68 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSA------ 68 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCH------
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCH------
Confidence 7999999985 3899999999999999999999999999999999998875 999998865321100
Q ss_pred cccccccccccccccCc-ccccccccHHHHh-hcCC-CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE-GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
..++..++++++ ..++..++..+++ ++.. ....++..++++.+++. .++++.+|||||||||+|||||+.
T Consensus 69 -----~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 69 -----TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp -----HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred -----HHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 012233444444 2344455655443 3321 11245667889999985 578899999999999999999999
Q ss_pred CCC-------EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663 168 PFK-------VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240 (294)
Q Consensus 168 ~p~-------iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 240 (294)
+|+ +|||||||+|||+.++..++++|.++.++ |+|||+||||++++..+||++++|++|+++..|+++++..
T Consensus 144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999 99999999999999999999999998655 8999999999999999999999999999999999888753
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-47 Score=341.69 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=164.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++...+++|+|+||+|++||+++|+||||||||||+|+|+|++.+ .|.+.++|.+......
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~----- 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNR----- 88 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCH-----
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCH-----
Confidence 479999999999752114699999999999999999999999999999999999864 7999998865421100
Q ss_pred CcccccccccccccccCc-ccccccccHHH-HhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQR 156 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqk 156 (294)
..++..++++++ ..++. .+..+ +.++......+...++++.+++. .++++.+||||||
T Consensus 89 ------~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 89 ------NSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp ------HHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred ------HHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 011223444444 23333 35444 44432222334445556555541 1356789999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|++|||||||++||+.++..+++.|.++. + ++|||+||||++++. .||+|++|++|+++..|+++
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999874 3 799999999999886 59999999999999999998
Q ss_pred HHHHh
Q 022663 237 ELDEL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
++...
T Consensus 239 ~l~~~ 243 (260)
T 2ghi_A 239 DLLKL 243 (260)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88653
No 31
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.4e-48 Score=338.69 Aligned_cols=199 Identities=20% Similarity=0.289 Sum_probs=154.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|++. ++++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~------------- 67 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVAIKGS------------- 67 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE-EEEEEECSC-------------
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCE-------------
Confidence 69999999999631 257999999999999999999999999999999999999886 888887762
Q ss_pred cccccccccccccccCcccccccccHHH-HhhcCCCCcHHHHHHHHHH------cCCC-------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEGSDPVRRERLIEL------LDID-------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~------l~l~-------~~~~~~~LSgGqkqR 158 (294)
+.++++. +.....+..+ +.++... ..+...++++. ++.. .++++.+||||||||
T Consensus 68 i~~v~Q~-----------~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqR 135 (237)
T 2cbz_A 68 VAYVPQQ-----------AWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 135 (237)
T ss_dssp EEEECSS-----------CCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHH
T ss_pred EEEEcCC-----------CcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 2222221 1112334433 3333211 11222233332 2221 356789999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHH---HHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK---DECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~---~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
|+|||||+.+|++|||||||++||+.++..+++.|. ++ . .|+|||+||||++++. .||++++|++|+++..|++
T Consensus 136 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 212 (237)
T 2cbz_A 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSY 212 (237)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999999984 33 2 3899999999999875 6999999999999999999
Q ss_pred HHHHHh
Q 022663 236 AELDEL 241 (294)
Q Consensus 236 ~~~~~~ 241 (294)
+++...
T Consensus 213 ~~~~~~ 218 (237)
T 2cbz_A 213 QELLAR 218 (237)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 887653
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.8e-48 Score=347.93 Aligned_cols=214 Identities=20% Similarity=0.225 Sum_probs=164.0
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~ 88 (294)
.++|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|++ .|+ +|.+.++|.+........
T Consensus 18 ~~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~ 93 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLALSPED 93 (267)
T ss_dssp --CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEEGGGSCHHH
T ss_pred CceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-CeEEEECCEECCcCCHHH
Confidence 357999999999964 57999999999999999999999999999999999984 455 899999887542110000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHHh-h---------cCCCCc----HHHHHHHHHHcCCC---cccccc-
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F---------GVEGSD----PVRRERLIELLDID---LQWRMH- 149 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------~~~~~~----~~~~~~~l~~l~l~---~~~~~~- 149 (294)
..+..++++++ ..+++.++..++. + +..... .+++.++++.+++. .++++.
T Consensus 94 ----------~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 163 (267)
T 2zu0_C 94 ----------RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 163 (267)
T ss_dssp ----------HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred ----------HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 00111333333 2233444433321 1 111111 23456788888884 367776
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCe
Q 022663 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGE 228 (294)
Q Consensus 150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~ 228 (294)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|+|||+||||++++..+ ||++++|++|+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGR 242 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999988753 489999999999999886 99999999999
Q ss_pred EEecccHHHHH
Q 022663 229 LRRAEKLAELD 239 (294)
Q Consensus 229 i~~~g~~~~~~ 239 (294)
++..|+++++.
T Consensus 243 i~~~g~~~~~~ 253 (267)
T 2zu0_C 243 IVKSGDFTLVK 253 (267)
T ss_dssp EEEEECTTHHH
T ss_pred EEEEcCHHHHh
Confidence 99999887764
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-47 Score=341.71 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=166.3
Q ss_pred cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
||+++||+++|++. ..+++|+++||+|+ ||+++|+||||||||||+|+|+|++ |+ +|.+.++|.+.... .
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~G~I~~~g~~~~~~-~----- 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY-SGNIFINGMEVRKI-R----- 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGC-S-----
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-CcEEEECCEECcch-H-----
Confidence 48999999999630 00469999999999 9999999999999999999999999 86 89999988653211 0
Q ss_pred Cccccccccccccc-ccCcccccccccHHHH-hhcC--CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVG-SAGEIPLQGDFSAEHM-IFGV--EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAra 164 (294)
. +..++ ++++.+.. ..+..++ .+.. .....++..++++.+++. .++++.+|||||||||+||||
T Consensus 72 -------~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 72 -------N-YIRYSTNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp -------C-CTTEEECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred -------H-hhheEEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 0 12234 44442222 4454433 2221 123355677889999986 578899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhc-eEEEeeCCeEEecccHHHHHHh
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT-HLAYIQDGELRRAEKLAELDEL 241 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d-~v~~l~~G~i~~~g~~~~~~~~ 241 (294)
|+.+|++|||||||++||+.++..++++|.++. . |||+||||++++.++|| ++++|++|+++..|+++++.+.
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 999999999999999999999999999998753 2 99999999999999999 9999999999999999888643
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.3e-46 Score=328.75 Aligned_cols=199 Identities=21% Similarity=0.308 Sum_probs=152.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++. ++++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~------------ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGR------------ 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEECSC------------
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-ccEEEECCE------------
Confidence 379999999999631 257999999999999999999999999999999999999886 899888762
Q ss_pred CcccccccccccccccCcccccccccHHH-HhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq 157 (294)
+.+.++. ..+++. +..+ +.++.. ........+++.+++. .++++.+|||||||
T Consensus 71 -i~~v~q~----------~~~~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq 137 (229)
T 2pze_A 71 -ISFCSQF----------SWIMPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 137 (229)
T ss_dssp -EEEECSS----------CCCCSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH
T ss_pred -EEEEecC----------CcccCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 2232221 112232 4333 333321 1122223333333321 12346899999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF-KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l-~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
||+|||||+.+|++|||||||+|||+.++..+++.+ .++. .++|||+||||++++. .||++++|++|+++..|+++
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 214 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFS 214 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999964 4442 3789999999999886 59999999999999999998
Q ss_pred HHHH
Q 022663 237 ELDE 240 (294)
Q Consensus 237 ~~~~ 240 (294)
++.+
T Consensus 215 ~~~~ 218 (229)
T 2pze_A 215 ELQN 218 (229)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-47 Score=354.13 Aligned_cols=214 Identities=19% Similarity=0.243 Sum_probs=171.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+|+|++. +.++|+||||+|++||+++|+||||||||||||+|+|++. + +|.|.++|.+......
T Consensus 18 ~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G~~i~~~~~----- 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDGVSWDSITL----- 89 (390)
T ss_dssp CCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESSCBTTSSCH-----
T ss_pred CeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECCEECCcCCh-----
Confidence 469999999999521 2579999999999999999999999999999999999986 4 8999999876432110
Q ss_pred CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--ccccccc-----------CCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHK-----------VSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LSgGqkq 157 (294)
..+++.++++++. .+++ .+..+++........++..++++.+++. .++++.+ |||||||
T Consensus 90 ------~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 90 ------EQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp ------HHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred ------HHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHH
Confidence 1123345555542 3333 4555544322233455677888888885 4677777 9999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
||+|||||+.+|++|||||||++||+..+.++++.|+++. .+.|+|+||||++.+ ..||||++|++|+|+..|++++
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998753 479999999998765 4699999999999999999999
Q ss_pred HHHhhh
Q 022663 238 LDELRN 243 (294)
Q Consensus 238 ~~~~~~ 243 (294)
+...+.
T Consensus 240 l~~~p~ 245 (390)
T 3gd7_A 240 LYHYPA 245 (390)
T ss_dssp HHHCCS
T ss_pred HHhCCC
Confidence 987643
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.9e-47 Score=326.27 Aligned_cols=195 Identities=17% Similarity=0.186 Sum_probs=155.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.. .
T Consensus 9 ~~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~---~----- 75 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPIT---K----- 75 (214)
T ss_dssp CEEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGG---G-----
T ss_pred ceEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEhh---h-----
Confidence 47999999999953 6999999999999999999999999999999999998886 899999886531 0
Q ss_pred CcccccccccccccccCc-ccccccccHHHH-hhcC---C-CCcHHHHHHHHHHcCCCc-ccccccCCHHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV---E-GSDPVRRERLIELLDIDL-QWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~l~~l~l~~-~~~~~~LSgGqkqRv~lAra 164 (294)
++..++++++ ..++..++..++ .++. . ....+++.++++.+++.. ++++.+|||||||||+||||
T Consensus 76 --------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 76 --------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp --------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred --------hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHH
Confidence 1122333333 233444454433 2221 1 223456678899998853 77899999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
|+.+|++|||||||++||+.++..++++|.++.++ |.|||++|||++++..+||+++++ .|+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999998654 899999999999999999998754 3544
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.4e-44 Score=353.62 Aligned_cols=213 Identities=21% Similarity=0.290 Sum_probs=169.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 340 ~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~----- 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKL----- 412 (582)
T ss_pred CeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCH-----
Confidence 369999999999742 257999999999999999999999999999999999999887 8999999876422110
Q ss_pred CcccccccccccccccCcc-cccccccH-HHHhhcC-CCCcHHHHHHHHHHcCCC-------------cccccccCCHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGV-EGSDPVRRERLIELLDID-------------LQWRMHKVSDGQ 155 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGq 155 (294)
..++..++++++. .++.. +. +++.++. ...+.++..++++.+++. .+++..+|||||
T Consensus 413 ------~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 413 ------TNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred ------HHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 1123344555542 33443 44 4444443 233445566677766652 133557999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
|||++|||||+.+|++|||||||++||+.++..+.+.|.++. + |+|+|+||||++.+. .||+|++|++|++++.|++
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999874 3 899999999999886 6999999999999999999
Q ss_pred HHHHHh
Q 022663 236 AELDEL 241 (294)
Q Consensus 236 ~~~~~~ 241 (294)
+++.+.
T Consensus 563 ~~l~~~ 568 (582)
T 3b5x_A 563 ADLLAQ 568 (582)
T ss_pred HHHHhC
Confidence 998754
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.4e-44 Score=353.56 Aligned_cols=213 Identities=22% Similarity=0.293 Sum_probs=169.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 340 ~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~----- 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTL----- 412 (582)
T ss_dssp CCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEETTTBCH-----
T ss_pred CcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC-CCeEEECCEEccccCH-----
Confidence 469999999999741 257999999999999999999999999999999999999886 8999999876422100
Q ss_pred CcccccccccccccccCc-ccccccccH-HHHhhcC-CCCcHHHHHHHHHHcCCC-------------cccccccCCHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV-EGSDPVRRERLIELLDID-------------LQWRMHKVSDGQ 155 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGq 155 (294)
..++..++++++ ..+++. +. +++.++. ...+.++..++++.+++. .+++..+|||||
T Consensus 413 ------~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 413 ------ASLRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp ------HHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred ------HHHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 112334555554 334443 54 4444543 233445566666666542 234567999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
|||++|||||+.+|++|||||||++||+.++..+.+.|.++. + |+|+|+||||++.+. .||+|++|++|++++.|++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999875 3 899999999999886 6999999999999999999
Q ss_pred HHHHHh
Q 022663 236 AELDEL 241 (294)
Q Consensus 236 ~~~~~~ 241 (294)
+++.+.
T Consensus 563 ~~l~~~ 568 (582)
T 3b60_A 563 SELLAQ 568 (582)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998754
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-44 Score=352.79 Aligned_cols=213 Identities=23% Similarity=0.313 Sum_probs=169.2
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 340 ~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~i~g~~i~~~~~----- 412 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDVRTVKL----- 412 (587)
T ss_dssp CCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS-EEEEEESSSBGGGBCH-----
T ss_pred CcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEECCEEcccCCH-----
Confidence 369999999999642 357999999999999999999999999999999999999887 9999999987532110
Q ss_pred CcccccccccccccccCcc-cccccccH-HHHhhcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQR 156 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqk 156 (294)
..++..++++++. .++.. +. +++.++......+...++++..++ + .++++.+||||||
T Consensus 413 ------~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 413 ------KDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp ------HHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred ------HHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 1223445555553 34443 54 444444433333444444443332 1 3566789999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
||++|||||+.+|++|||||||++||+.++..+.+.|.++. .|+|+|+||||++.+. .||+|++|++|++++.|+++
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998863 4899999999999886 79999999999999999999
Q ss_pred HHHHh
Q 022663 237 ELDEL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
++.+.
T Consensus 563 el~~~ 567 (587)
T 3qf4_A 563 ELLEH 567 (587)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98764
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.4e-44 Score=354.46 Aligned_cols=211 Identities=25% Similarity=0.348 Sum_probs=166.0
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
|+++||+++|++..+.++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~i~~~~~------- 413 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA-SGTISLDGHDIRQLNP------- 413 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS-EEEEEETTEETTTBCH-------
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCEEhhhCCH-------
Confidence 99999999997421246999999999999999999999999999999999999887 8999999876422110
Q ss_pred ccccccccccccccCc-ccccccccH-HHHhhcCCC---CcHHHHHHHHHHcCCC---------c----ccccccCCHHH
Q 022663 94 SYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVEG---SDPVRRERLIELLDID---------L----QWRMHKVSDGQ 155 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~---~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGq 155 (294)
..++..++++++ ..+++. +. +++.++... .+.++..++++.+++. . ++++.+|||||
T Consensus 414 ----~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq 488 (595)
T 2yl4_A 414 ----VWLRSKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488 (595)
T ss_dssp ----HHHHHSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHH
T ss_pred ----HHHHhceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHH
Confidence 112334555554 334443 54 444454332 3455566777776642 1 23457999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 235 (294)
|||++|||||+.+|++|||||||++||+.++..+.+.|.++.+ ++|+|+||||++.+. .||+|++|++|++++.|++
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 789999999999886 5999999999999999999
Q ss_pred HHHHH
Q 022663 236 AELDE 240 (294)
Q Consensus 236 ~~~~~ 240 (294)
+++.+
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 88765
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.6e-44 Score=352.97 Aligned_cols=214 Identities=22% Similarity=0.312 Sum_probs=169.3
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
..|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 338 ~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~----- 410 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNIKDFLT----- 410 (578)
T ss_dssp CCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEGGGSCH-----
T ss_pred CeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCH-----
Confidence 369999999999742 357999999999999999999999999999999999999887 9999999876432110
Q ss_pred CcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR 157 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq 157 (294)
..++..++++++ ..+++....+++.++......+...++++..++. .+++..+|||||||
T Consensus 411 ------~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 411 ------GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp ------HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred ------HHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 112334555555 3344443344555554433444455555554431 23456789999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|++|||||+.+|++|||||||++||+.++..+.+.|.++. .++|+|+||||++.+.. ||+|++|++|++++.|++++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999864 99999999999999999999
Q ss_pred HHHh
Q 022663 238 LDEL 241 (294)
Q Consensus 238 ~~~~ 241 (294)
+.+.
T Consensus 562 l~~~ 565 (578)
T 4a82_A 562 LIAK 565 (578)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-44 Score=355.47 Aligned_cols=212 Identities=26% Similarity=0.340 Sum_probs=168.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......
T Consensus 354 ~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~i~~~~~------ 424 (598)
T 3qf4_B 354 EIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKR------ 424 (598)
T ss_dssp CEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS-EEEEEETTEEGGGSCH------
T ss_pred eEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CeEEEECCEEhhhCCH------
Confidence 5999999999975 357999999999999999999999999999999999999887 8999999876532110
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
..++..++++++. .++.....+++.++....+.+...++++.+++. ..++..+||||||||
T Consensus 425 -----~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 425 -----SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp -----HHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred -----HHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 1233445555553 344433334444544333334444554444431 123447899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|++|||||||++||+.++..+.+.|.++. .|+|+|+||||++.+.. ||+|++|++|++++.|+++++
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999874 48999999999999875 999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 577 ~~~ 579 (598)
T 3qf4_B 577 IQK 579 (598)
T ss_dssp HHT
T ss_pred HhC
Confidence 765
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.4e-44 Score=322.72 Aligned_cols=195 Identities=21% Similarity=0.306 Sum_probs=138.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++|+++||++.+ +++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~------------ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGR------------ 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE-EEEEECCSC------------
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCE------------
Confidence 479999999864 36999999999999999999999999999999999999886 888887652
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
+.++++. ..+++. +..+++.+.. ........+++.+++. .++++.+||||||||
T Consensus 101 -i~~v~Q~----------~~l~~~-tv~enl~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QR 167 (290)
T 2bbs_A 101 -ISFCSQN----------SWIMPG-TIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR 167 (290)
T ss_dssp -EEEECSS----------CCCCSS-BHHHHHHTTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHH
T ss_pred -EEEEeCC----------CccCcc-cHHHHhhCcc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHH
Confidence 2232221 112222 4444333221 1222223334444331 123457999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF-KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l-~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
|+|||||+.+|++|||||||+|||+.++..+++.+ .++. .|+|||+||||++++. .||++++|++|+++..|++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~ 244 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSE 244 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999864 4442 3889999999999886 599999999999999999988
Q ss_pred HHH
Q 022663 238 LDE 240 (294)
Q Consensus 238 ~~~ 240 (294)
+..
T Consensus 245 l~~ 247 (290)
T 2bbs_A 245 LQN 247 (290)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.6e-42 Score=333.87 Aligned_cols=202 Identities=21% Similarity=0.199 Sum_probs=160.6
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|++.|+ +|.+.+.
T Consensus 285 ~~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~------------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIEWD------------- 346 (538)
T ss_dssp CEEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BCCCCCC-------------
T ss_pred CeEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEC-------------
Confidence 357999999999964 4799999999999999999999999999999999998886 6666531
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcC--C-CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--E-GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
..+.++++... .....+..++.... . ....+.+.++++.+++. .++++.+|||||||||+|||||
T Consensus 347 ~~i~~v~Q~~~----------~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 347 LTVAYKPQYIK----------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL 416 (538)
T ss_dssp CCEEEECSSCC----------CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred ceEEEEecCCc----------CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 12333333211 11223333332211 0 01234456677888874 5788999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHHHH
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAELDE 240 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 240 (294)
+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||||++|++ |++...|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999998766799999999999999999999999986 77888888877654
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-41 Score=334.37 Aligned_cols=201 Identities=21% Similarity=0.205 Sum_probs=161.5
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++++++|++++|++ ..|+++||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.+. .
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~-------------~ 417 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWD-------------L 417 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BSCCCCC-------------C
T ss_pred eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEEe-------------e
Confidence 57999999999964 4799999999999999999999999999999999998886 6766531 1
Q ss_pred CcccccccccccccccCcccccccccHHHHhhcC--CC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+.+++|.. ......+..++.... .. .....+.++++.+++. .++++.+|||||||||+|||||+
T Consensus 418 ~i~~v~Q~~----------~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 418 TVAYKPQYI----------KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 487 (607)
T ss_dssp CEEEECSSC----------CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEecCc----------cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 233333321 111223333332211 00 1234456788888885 57889999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHHHH
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAELDE 240 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 240 (294)
.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++ |++...|+++++..
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999998766799999999999999999999999986 77788888887754
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-41 Score=328.91 Aligned_cols=200 Identities=19% Similarity=0.167 Sum_probs=156.3
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
+.++++++++.|++ ..|+++||+|++||++||+||||||||||+|+|+|++.|+ +|.+.+.+..
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~----------- 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPEKQI----------- 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-BCCEESSCCC-----------
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCee-----------
Confidence 47999999999965 4688899999999999999999999999999999999887 8888765432
Q ss_pred CcccccccccccccccCcccccccccHHHHh-hcCC---CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVE---GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
+.+.++... .....+..++. .... ........++++.+++. .++++.+|||||||||+|||||
T Consensus 332 -i~~~~q~~~----------~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 -LSYKPQRIF----------PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp -EEEECSSCC----------CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred -eEeechhcc----------cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 222222110 01112222222 1111 11223456777778875 5789999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHH
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAEL 238 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~ 238 (294)
+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++ |.+...+++.++
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999999877799999999999999999999999986 445555555443
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-41 Score=358.94 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=173.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|+++.+.++|+||||+|++||.+||+||||||||||+++|.|++.|. +|.|.++|.+...-.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~iDG~di~~i~------- 1147 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL-GGEIFIDGSEIKTLN------- 1147 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS-SSEEEETTEETTTBC-------
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC-CCEEEECCEEhhhCC-------
Confidence 599999999997533457999999999999999999999999999999999999887 999999998753211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCC--CCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVE--GSDPVRRERLIELLDID---------LQW----RMHKVSDGQR 156 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqk 156 (294)
...++..+++++|. .++.....+|+.++.. ..+.+.+.++++..++. .+. ...+||||||
T Consensus 1148 ----~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A 1148 ----PEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp ----HHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred ----HHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence 12345556666663 3454444556556643 23455566666665541 233 3457999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
||++|||||+++|+|||||||||+||+++...|.+.|++.. .++|+|+|+|.+..+.. ||+|++|++|+|++.|+++
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998754 48999999999998875 9999999999999999999
Q ss_pred HHHHhh
Q 022663 237 ELDELR 242 (294)
Q Consensus 237 ~~~~~~ 242 (294)
++++..
T Consensus 1301 eLl~~~ 1306 (1321)
T 4f4c_A 1301 QLMSEK 1306 (1321)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 998754
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-40 Score=350.99 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=176.1
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++..+.++|+|+||+|++|+.++|+||||||||||+++|.|++.|. +|.+.++|.+...-.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~-~G~I~idG~~i~~~~------- 486 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL-KGKITIDGVDVRDIN------- 486 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS-EEEEEETTEETTTSC-------
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc-cCcccCCCccchhcc-------
Confidence 599999999997544568999999999999999999999999999999999999887 999999997653211
Q ss_pred cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR 158 (294)
...++..+++++|.+ ++.....+|+.++....+.+++.++++..++. .......||||||||
T Consensus 487 ----~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 562 (1321)
T 4f4c_A 487 ----LEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR 562 (1321)
T ss_dssp ----HHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH
T ss_pred ----HHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH
Confidence 112445667776644 44444456666776555666666666665431 123456799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++||||++++|+|||||||||+||+.+...+.+.|.++. .|+|+|+|||++..+. .||+|++|++|+|++.|+.+++
T Consensus 563 iaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 563 IAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHH
Confidence 999999999999999999999999999999999998875 3899999999999876 5999999999999999999999
Q ss_pred HHhh
Q 022663 239 DELR 242 (294)
Q Consensus 239 ~~~~ 242 (294)
.+..
T Consensus 640 ~~~~ 643 (1321)
T 4f4c_A 640 MAQQ 643 (1321)
T ss_dssp HTTT
T ss_pred HHhh
Confidence 7653
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-40 Score=351.79 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=169.4
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~-~G~i~i~g~~i~~~~------- 458 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL-DGMVSIDGQDIRTIN------- 458 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS-EEEEEETTEEGGGSC-------
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEHHhCC-------
Confidence 599999999997532357999999999999999999999999999999999999887 899999987643211
Q ss_pred cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRR 158 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqR 158 (294)
...++..+++++|. .++.....+++.++......+...++++..++ . ...+..+||||||||
T Consensus 459 ----~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qr 534 (1284)
T 3g5u_A 459 ----VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR 534 (1284)
T ss_dssp ----HHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHH
T ss_pred ----HHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHH
Confidence 11233445666553 34444334555565544344444444433322 1 234567899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
++|||||+.+|+||||||||++||+.+...+.+.+.++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998753 48999999999999976 999999999999999999998
Q ss_pred HHh
Q 022663 239 DEL 241 (294)
Q Consensus 239 ~~~ 241 (294)
.+.
T Consensus 612 ~~~ 614 (1284)
T 3g5u_A 612 MRE 614 (1284)
T ss_dssp HHT
T ss_pred HhC
Confidence 765
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-40 Score=349.20 Aligned_cols=215 Identities=21% Similarity=0.302 Sum_probs=166.0
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.|+++||+++|++..+.++|+|+||+|++||++||+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~-~G~I~i~g~~i~~~~~------ 1102 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM-AGSVFLDGKEIKQLNV------ 1102 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS-EEEEESSSSCTTSSCH------
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEEcccCCH------
Confidence 599999999997522246999999999999999999999999999999999999887 9999999987532111
Q ss_pred cccccccccccccccCcccccccccH-HHHhhcCC--CCcHHHHHHHHHHcCCC-------------cccccccCCHHHH
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVE--GSDPVRRERLIELLDID-------------LQWRMHKVSDGQR 156 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqk 156 (294)
..++..++++++.+.....+. +++.++.. ....+...++++..++. ......+||||||
T Consensus 1103 -----~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1103 -----QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp -----HHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred -----HHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 112333444444332223344 44444332 12333444444443321 1234568999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 236 (294)
|||+|||||+.+|+||||||||++||+.+...+.+.|.+. ..|+|||+||||++.+.. ||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~--~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH--SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh--CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999874 348999999999999865 9999999999999999999
Q ss_pred HHHHhh
Q 022663 237 ELDELR 242 (294)
Q Consensus 237 ~~~~~~ 242 (294)
++.+..
T Consensus 1255 ~l~~~~ 1260 (1284)
T 3g5u_A 1255 QLLAQK 1260 (1284)
T ss_dssp HHHHSC
T ss_pred HHHhCC
Confidence 998653
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-40 Score=323.43 Aligned_cols=199 Identities=22% Similarity=0.247 Sum_probs=156.0
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPG-----SRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.+++++|++ ...+++++||++.+| |+++|+||||||||||+|+|+|++.|+ +|.. +. ..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~-~~------------~~ 413 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQD-IP------------KL 413 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS-BCCC-CC------------SC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCcC-cc------------CC
Confidence 678888864 235789999999999 889999999999999999999999887 4531 00 01
Q ss_pred CcccccccccccccccCcccccccccHHHHhh-cCC--CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF-GVE--GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.+.+.++.. ......+..++.. ... ........++++.+++. .++++.+|||||||||+|||||+
T Consensus 414 ~i~~~~q~~----------~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 414 NVSMKPQKI----------APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp CEEEECSSC----------CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred cEEEecccc----------cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 122222211 0011122323221 111 12344556788888885 58899999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHHHHh
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAELDEL 241 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~~ 241 (294)
.+|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|++ |++...|+++++++.
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999999998766799999999999999999999999996 899999999988764
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.9e-40 Score=322.06 Aligned_cols=202 Identities=19% Similarity=0.258 Sum_probs=147.6
Q ss_pred CcccEEE--------cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE-------
Q 022663 10 KLNSIKV--------CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV------- 74 (294)
Q Consensus 10 ~~~~l~~--------~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i------- 74 (294)
+..+|++ +||+++|++ ...+|+++| +|++||+++|+||||||||||+|+|+|++.|+ .|.+
T Consensus 80 p~~~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~ 155 (607)
T 3bk7_A 80 PFNAISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNV 155 (607)
T ss_dssp SSCCCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHH
T ss_pred CcceEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchh
Confidence 3456888 999999975 224899999 99999999999999999999999999998886 5553
Q ss_pred --EecCCcccccccccccCCcccccccccccccccCc-ccccc---cccHHHHhhcCCCCcHHHHHHHHHHcCCC--ccc
Q 022663 75 --QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQG---DFSAEHMIFGVEGSDPVRRERLIELLDID--LQW 146 (294)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~ 146 (294)
.+.|............ ....+++..+ ..... ..+..+++... ....++.++++.+++. .++
T Consensus 156 ~~~~~G~~~~~~~~~~~~---------~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~~ 224 (607)
T 3bk7_A 156 IRAFRGNELQNYFERLKN---------GEIRPVVKPQYVDLLPKAVKGKVRELLKKV--DEVGKFEEVVKELELENVLDR 224 (607)
T ss_dssp HHHTTTSTHHHHHHHHHH---------TSCCCEEECSCGGGGGGTCCSBHHHHHHHT--CCSSCHHHHHHHTTCTTGGGS
T ss_pred hheeCCEehhhhhhhhhh---------hhcceEEeechhhhchhhccccHHHHhhhh--HHHHHHHHHHHHcCCCchhCC
Confidence 1122211000000000 0000111111 00000 01333332211 1123467789999985 588
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999875 499999999999999999999999986
Q ss_pred C
Q 022663 227 G 227 (294)
Q Consensus 227 G 227 (294)
+
T Consensus 304 ~ 304 (607)
T 3bk7_A 304 E 304 (607)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-39 Score=316.58 Aligned_cols=198 Identities=18% Similarity=0.225 Sum_probs=141.8
Q ss_pred EEE-cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE---------EecCCcccc
Q 022663 14 IKV-CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV---------QVLNRSSFH 83 (294)
Q Consensus 14 l~~-~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i---------~~~~~~~~~ 83 (294)
.++ +||+++|++ ...+|+++| +|++||+++|+||||||||||+|+|+|++.|+ .|.+ .+.|.....
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-LCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSHHHHHHHTTTSTHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCccCcchhhhHHhhCCccHHH
Confidence 455 699999975 225899999 99999999999999999999999999998886 5552 112221100
Q ss_pred cccccccCCcccccccccccccccCc-cccccc---ccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663 84 DTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGD---FSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRR 157 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkq 157 (294)
....... ....+++..+ ....+. .+..++.... ....++.++++.+++. .++++.+|||||||
T Consensus 97 ~~~~~~~---------~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~--~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQ 165 (538)
T 1yqt_A 97 YFEKLKN---------GEIRPVVKPQYVDLIPKAVKGKVIELLKKA--DETGKLEEVVKALELENVLEREIQHLSGGELQ 165 (538)
T ss_dssp HHHHHHT---------TSCCCEEECSCGGGSGGGCCSBHHHHHHHH--CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHH
T ss_pred HHHHHHH---------HhhhhhhhhhhhhhcchhhhccHHHHHhhh--hHHHHHHHHHHHcCCChhhhCChhhCCHHHHH
Confidence 0000000 0000111111 000000 1222222111 1123467788999985 57899999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
||+|||||+.+|++|||||||++||+.++.+++++|+++.+ .|+|||+||||++++..+||+|++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999875 5999999999999999999999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.2e-39 Score=329.61 Aligned_cols=218 Identities=22% Similarity=0.270 Sum_probs=151.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc---cccc-
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF---HDTQ- 86 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~---~~~~- 86 (294)
.++|+++||+++|++. .+++|+|+||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.+.+.... .+..
T Consensus 669 ~~mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~-sG~I~~~~~~~I~yv~Q~~~ 746 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT-SGEVYTHENCRIAYIKQHAF 746 (986)
T ss_dssp SEEEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS-EEEEEECTTCCEEEECHHHH
T ss_pred CceEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEcCccceEeeccchh
Confidence 3579999999999642 246999999999999999999999999999999999998887 888887653100 0000
Q ss_pred --------ccccCCcccccc------------------c-------------cc--------cccc--cc-------Cc-
Q 022663 87 --------LVCSGDLSYLGG------------------S-------------WS--------KTVG--SA-------GE- 109 (294)
Q Consensus 87 --------~~~~~~~~~~~~------------------~-------------~~--------~~~~--~~-------~~- 109 (294)
......+.+..+ + .+ ..+. +. .+
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 000000000000 0 00 0000 00 00
Q ss_pred cc----ccccccHHH-------------------------HhhcC-CCCcHHHHHHHHHHcCCC----cccccccCCHHH
Q 022663 110 IP----LQGDFSAEH-------------------------MIFGV-EGSDPVRRERLIELLDID----LQWRMHKVSDGQ 155 (294)
Q Consensus 110 ~~----~~~~~~~~~-------------------------~~~~~-~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGq 155 (294)
.. .+..++..+ ...+. ......++.++++.+++. .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00 000011000 00111 112245567889999985 266899999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
||||+|||||+.+|++|||||||+|||+.++..+.+.|.+ .+.|||+||||++++..+||++++|++|+++..|+
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----CSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999998888764 36799999999999999999999999999987664
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1e-37 Score=317.43 Aligned_cols=195 Identities=19% Similarity=0.260 Sum_probs=151.2
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC-CcccCCCceEEecCCcccccccccccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G-~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
.|...|++++|++ +.+|+|+||+|++|++++|+||||||||||+|+|+| .+ .|.+.... .
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i----------~g~~~~~~------~ 495 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV----------DGFPTQEE------C 495 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS----------TTCCCTTT------S
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc----------CCCccccc------e
Confidence 5777799999975 579999999999999999999999999999999994 22 11110000 0
Q ss_pred CcccccccccccccccCcccccccccHHHHhhc-CCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHcc
Q 022663 92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-VEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
.+.+..+.. ..++..++..+++.. .... .++..++++.+++. .++++.+|||||||||+|||||+.
T Consensus 496 ~~~~v~q~~---------~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 496 RTVYVEHDI---------DGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp CEEETTCCC---------CCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT
T ss_pred eEEEEcccc---------cccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 011111100 012233444443321 1112 45677889999984 478899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAELDE 240 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 240 (294)
+|++|||||||+|||+.++..++++|.+ .|.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999976 4899999999999999999999999999996 6899888764
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=310.25 Aligned_cols=206 Identities=22% Similarity=0.304 Sum_probs=141.6
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC-cc-
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD-LS- 94 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~- 94 (294)
+|++++|+. ....|++++ ++++||++||+||||||||||||+|+|++.|+ .|.+..... +........+. +.
T Consensus 81 ~~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~--~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 81 AHVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPE--WQEIIKYFRGSELQN 154 (608)
T ss_dssp TTEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSC--HHHHHHHTTTSTHHH
T ss_pred CCeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccc--hhhhhheecChhhhh
Confidence 367889975 234677777 69999999999999999999999999999887 666521110 00000000000 00
Q ss_pred ccccccccccc------ccCccc--ccc-cccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663 95 YLGGSWSKTVG------SAGEIP--LQG-DFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 95 ~~~~~~~~~~~------~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr 163 (294)
+........+. +....+ ... ..+..++..........++.++++.+++. .++++.+|||||||||+|||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGM 234 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHH
Confidence 00000000000 000000 000 00111111111122345677889999986 68899999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++|..
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999998864 489999999999999999999999987653
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.8e-38 Score=311.55 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=132.2
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCcccCCCceE-------EecCCc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLL---------------------KILAGKHMVGGRDVV-------QVLNRS 80 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLl---------------------k~i~G~~~~~~~g~i-------~~~~~~ 80 (294)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+ .+.+ .+.+..
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~-~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPD-VDAIEGLSPAISIDQKT 109 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CC-CSEEESCCCEEEESSCC
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCC-ccceeccccceEecCch
Confidence 4689999999999999999999999999998 7888876665 3333 333322
Q ss_pred ccccccccccCCccccccccc------ccccccCc---ccccccccHHHHh-hc--CC--CCc----H------HHHHHH
Q 022663 81 SFHDTQLVCSGDLSYLGGSWS------KTVGSAGE---IPLQGDFSAEHMI-FG--VE--GSD----P------VRRERL 136 (294)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~-~~--~~--~~~----~------~~~~~~ 136 (294)
..... ...+.+..+... ..++...+ ...+..++..++. +. .. ... . .....+
T Consensus 110 ~~~~~----~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSRNP----RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhccc----hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 11100 011111111100 00000000 0011112222211 10 00 000 0 011234
Q ss_pred HHHcCCC---cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
++.+++. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+.+++++|+++.+ .|.|||+||||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 6777774 478999999999999999999999998 9999999999999999999999999864 599999999999
Q ss_pred hHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663 212 DGLETWATHLAYI------QDGELRRAEKLAELDELR 242 (294)
Q Consensus 212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 242 (294)
+++. .||+|++| ++|+++..|+++++.+..
T Consensus 265 ~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 265 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp HHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred HHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCc
Confidence 9876 59999999 899999999999987543
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.8e-37 Score=298.93 Aligned_cols=198 Identities=19% Similarity=0.240 Sum_probs=137.4
Q ss_pred cceEEEcCCCCCCCceeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE-----------EecCCccccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGIS-PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV-----------QVLNRSSFHD 84 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i-----------~~~~~~~~~~ 84 (294)
++.+.+|+.+ -|+-..|.+. +||++||+||||||||||+|+|+|++.|+ .|.+ .+.|......
T Consensus 3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~ 77 (538)
T 3ozx_A 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNY 77 (538)
T ss_dssp CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHH
T ss_pred CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHH
Confidence 4678899752 3555666554 89999999999999999999999999887 5654 1222211000
Q ss_pred ccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663 85 TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA 162 (294)
.......... ....+.+....+.....+..+...... ...+.+++++.+++. .++++.+|||||||||+||
T Consensus 78 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA 150 (538)
T 3ozx_A 78 FKELYSNELK-----IVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA 150 (538)
T ss_dssp HHHHHTTCCC-----EEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred HHHHhhcccc-----hhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0000000000 000111111111001112222221111 123456788889885 5889999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
|||+.+|++|||||||++||+.++..++++|+++. + |+|||+||||++++..+||+|++|++|.
T Consensus 151 ~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999999884 4 8999999999999999999999998654
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.4e-36 Score=300.11 Aligned_cols=108 Identities=22% Similarity=0.307 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663 132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV 205 (294)
Q Consensus 132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi 205 (294)
+..+.++.+++. .++++.+|||||||||+|||||+.+| ++|||||||+|||+.++..++++|+++.+ .|.|||
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi 600 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 600 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence 345566777774 47889999999999999999999887 59999999999999999999999999865 499999
Q ss_pred EEeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663 206 YATHIFDGLETWATHLAYI------QDGELRRAEKLAELDEL 241 (294)
Q Consensus 206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 241 (294)
+||||++++. .||||++| ++|++++.|+++++.+.
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 9999999875 69999999 89999999999998654
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=7.8e-34 Score=286.29 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663 132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP---FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV 205 (294)
Q Consensus 132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~---p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi 205 (294)
+..++++.+++. .++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..++++|.++.+ .|.|||
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVI 787 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVI 787 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 456788888885 4788999999999999999999996 799999999999999999999999999875 599999
Q ss_pred EEeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663 206 YATHIFDGLETWATHLAYI------QDGELRRAEKLAELDELR 242 (294)
Q Consensus 206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 242 (294)
+||||++++ ..||+|++| ++|+++..|+++++.+..
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 999999999 689999999 799999999999987543
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.9e-33 Score=282.62 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663 132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV 205 (294)
Q Consensus 132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi 205 (294)
+..++++.+++. +++++.+|||||||||+|||||+.+| +||||||||+|||+..+..+++.|.++.+ .|.|||
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVI 862 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVI 862 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Confidence 445677888874 47889999999999999999999875 79999999999999999999999999865 599999
Q ss_pred EEeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663 206 YATHIFDGLETWATHLAYI------QDGELRRAEKLAELDELR 242 (294)
Q Consensus 206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 242 (294)
+||||++++.. ||+|++| ++|+|++.|+++++.+..
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 99999998865 9999999 899999999999997654
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.6e-32 Score=277.72 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=96.5
Q ss_pred HHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 022663 133 RERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206 (294)
Q Consensus 133 ~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii 206 (294)
..++++.+++. .++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|.++.+ .|.|||+
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIv 903 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLV 903 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 45678888884 47889999999999999999999865 99999999999999999999999999865 5999999
Q ss_pred EeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663 207 ATHIFDGLETWATHLAYI------QDGELRRAEKLAELDEL 241 (294)
Q Consensus 207 vsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 241 (294)
||||++++. .||+|++| ++|+++..|+++++...
T Consensus 904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp ECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 999999874 79999999 78999999999998754
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3.5e-32 Score=276.04 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=96.1
Q ss_pred HHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 022663 133 RERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206 (294)
Q Consensus 133 ~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii 206 (294)
..++++.+++. .++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|.++.+ .|.|||+
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIv 921 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIV 921 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 35678888874 47889999999999999999999865 99999999999999999999999999865 5999999
Q ss_pred EeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663 207 ATHIFDGLETWATHLAYI------QDGELRRAEKLAELDEL 241 (294)
Q Consensus 207 vsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 241 (294)
||||++++ ..||+|++| ++|+++..|+++++...
T Consensus 922 isHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred EcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 99999997 579999999 68999999999998764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=283.12 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=140.5
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc-e-EEecCCccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-V-VQVLNRSSFHDTQLV 88 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g-~-i~~~~~~~~~~~~~~ 88 (294)
.+|++++||+++|+ ++||++++|++++|+||||||||||+|+|+|++.++ +| . +.+++..
T Consensus 116 ~~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~pI~vdg~~-------- 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQPLYINLDP-------- 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCCEEEECCT--------
T ss_pred cchhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCceeEEEcCCc--------
Confidence 46788999998883 699999999999999999999999999999998886 77 6 7777621
Q ss_pred ccCCcccccccccccccccCcccccccccHHHHhhcCC---C-CcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHH
Q 022663 89 CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE---G-SDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMG 164 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAra 164 (294)
...+.+.++.... .++...++..+..++.. . ...++...+++.+++.....+.+|||||||||+||||
T Consensus 178 -~~~i~~vpq~~~l-------~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra 249 (460)
T 2npi_A 178 -QQPIFTVPGCISA-------TPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVG 249 (460)
T ss_dssp -TSCSSSCSSCCEE-------EECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHH
T ss_pred -cCCeeeeccchhh-------cccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHH
Confidence 1122233222110 00111112211112111 0 0111223345556664222288999999999999999
Q ss_pred --HccCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh------HHHhhhce-----EEEee-
Q 022663 165 --LLHPFKV----LLLDE-ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD------GLETWATH-----LAYIQ- 225 (294)
Q Consensus 165 --L~~~p~i----LlLDE-Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~------~~~~~~d~-----v~~l~- 225 (294)
|+.+|++ ||||| ||++||+. +..+.+++ ++.+.|+|+||||.+ ++..+||+ |++|+
T Consensus 250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 9999999 99999 99999998 44444444 445889999999988 88899999 99999
Q ss_pred CCeEEecccHHHHH
Q 022663 226 DGELRRAEKLAELD 239 (294)
Q Consensus 226 ~G~i~~~g~~~~~~ 239 (294)
+|+++ .++++++.
T Consensus 325 ~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 325 LDGVS-AVDDVYKR 337 (460)
T ss_dssp CTTCC-CCCHHHHH
T ss_pred CCcEE-ECCHHHHh
Confidence 99999 88887764
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=2.3e-31 Score=250.63 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe----
Q 022663 151 VSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI---- 224 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l---- 224 (294)
|||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|.++. .|.|||+||||++++ .+||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999885 389999999999876 579999999
Q ss_pred eCCeEEec
Q 022663 225 QDGELRRA 232 (294)
Q Consensus 225 ~~G~i~~~ 232 (294)
++|+++..
T Consensus 373 ~~G~~~~~ 380 (415)
T 4aby_A 373 EDGRTVSH 380 (415)
T ss_dssp ETTEEEEE
T ss_pred cCCceEEE
Confidence 99998654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=1.1e-29 Score=236.00 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=78.0
Q ss_pred ccccccCCHHHHHHHHHHHHHc------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 145 QWRMHKVSDGQRRRVQICMGLL------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
++++.+|||||||||+||+||+ .+|++|||||||+|||+..+..++++|.++.+ .|.|||+||||+++ ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence 4678899999999999999999 79999999999999999999999999998854 59999999999998 5679
Q ss_pred ceEEEeeCCeEEe
Q 022663 219 THLAYIQDGELRR 231 (294)
Q Consensus 219 d~v~~l~~G~i~~ 231 (294)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999864
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=4.4e-31 Score=220.08 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=96.8
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccc
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ 113 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (294)
||||+|++||+++|+||||||||||+|++.+-.. .+ ... .. . .+..+.. .....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~~--~~d-~~-------~---g~~~~~~--------~~~~~ 54 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----VI--SSD-FC-------R---GLMSDDE--------NDQTV 54 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----EE--EHH-HH-------H---HHHCSST--------TCGGG
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----EE--ccH-HH-------H---HHhcCcc--------cchhh
Confidence 6899999999999999999999999998764211 10 000 00 0 0000000 00000
Q ss_pred ccccHHHHhhcCCCCcHHHHHHHHHHcCCC-cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH--------
Q 022663 114 GDFSAEHMIFGVEGSDPVRRERLIELLDID-LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV-------- 184 (294)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~-------- 184 (294)
........ ..........+.. ........|+|||||++||||++.+|++|+|||||++||+.
T Consensus 55 ~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~ 125 (171)
T 4gp7_A 55 TGAAFDVL---------HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125 (171)
T ss_dssp HHHHHHHH---------HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC
T ss_pred HHHHHHHH---------HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC
Confidence 00000000 0011111122322 22234567999999999999999999999999999999999
Q ss_pred --------HHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663 185 --------ARMDLLDFFKDECEQRGATIVYATHIFDGLET 216 (294)
Q Consensus 185 --------~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~ 216 (294)
.+..+.+.|.++.++ |.|+|+||||++++..
T Consensus 126 ~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 126 VEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVEE 164 (171)
T ss_dssp CCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHHH
T ss_pred CCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhhh
Confidence 568899998887665 9999999999998875
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=3.1e-30 Score=221.78 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=92.8
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+.+|++| ++||+++|+||||||||||+|+|+|+ .|+ +|.+... .... .. ......+++++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I~~~--~~~~-~~-----------~~~~~~ig~v~ 72 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQVSRI--ILTR-PA-----------VEAGEKLGFLP 72 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSCSEE--EEEE-CS-----------CCTTCCCCSSC
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCeeeeE--EecC-Cc-----------hhhhcceEEec
Confidence 4689985 89999999999999999999999999 876 6666321 0000 00 00111233332
Q ss_pred cccccccc-----cHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 022663 109 EIPLQGDF-----SAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183 (294)
Q Consensus 109 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~ 183 (294)
+.+ ...+ ........ ......+.++++. ++ ||||||+|||||+.+|++|||||||++
T Consensus 73 q~~-~enl~~~~~~~~~~~~~--~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 73 GTL-NEKIDPYLRPLHDALRD--MVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp C-------CTTTHHHHHHHTT--TSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred CCH-HHHHHHHHHHHHHHHHH--hccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 211 0000 00000000 0112233444443 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
++..++++|.++ + .|.||| ||||++++.. +...++|.
T Consensus 135 -~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 135 -TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp -CHHHHHHHHTTB-C-TTCEEE-EEEC----------------CC
T ss_pred -cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 888999999887 3 488999 9999986653 33455664
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=1.3e-26 Score=211.74 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=72.2
Q ss_pred ccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 145 QWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
+.++.+||+|||||++||+||+ .+|++|||||||++||+..+..++++|.++. .+.|||+|||+.+ +..+||+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~ 290 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-VMEAADL 290 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-HHhhCce
Confidence 4567899999999999999997 6899999999999999999999999998863 3789999999975 5668998
Q ss_pred E--EEeeCCeE
Q 022663 221 L--AYIQDGEL 229 (294)
Q Consensus 221 v--~~l~~G~i 229 (294)
+ ++|.+|..
T Consensus 291 ~~~v~~~~g~s 301 (322)
T 1e69_A 291 LHGVTMVNGVS 301 (322)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEEeCCEE
Confidence 7 88888864
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=9.6e-29 Score=232.15 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=125.3
Q ss_pred CceeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663 30 PLFYDFNLGISPGS--------------------RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge--------------------~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~ 89 (294)
.+|++|||+|++|+ +++|+||||||||||+|+|+|+..|+ .|.+.+++.+...
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~~~g~~~t~------ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVEVTM------ 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC----C------
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc-CceEEECCeecce------
Confidence 58999999999999 99999999999999999999998876 7777766543210
Q ss_pred cCCcccccccccccccccCcccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCC-cccccccCCHH--HHHHHHHHHHH
Q 022663 90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDID-LQWRMHKVSDG--QRRRVQICMGL 165 (294)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~LSgG--qkqRv~lAraL 165 (294)
. .+..+. +.++.++..++ .++. ......++++.+++. .+..+. ||+| |+||++||++|
T Consensus 110 ~---~~v~q~-----------~~~~~ltv~D~~g~~~---~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 E---RHPYKH-----------PNIPNVVFWDLPGIGS---TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp C---CEEEEC-----------SSCTTEEEEECCCGGG---SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHH
T ss_pred e---EEeccc-----------cccCCeeehHhhcccc---hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHH
Confidence 0 111110 00111111110 0111 112356778888775 244444 9999 99999999999
Q ss_pred cc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hc----CcEEEEEeCChhH--HHhhhceEE-Ee
Q 022663 166 LH----------PFKVLLLDEITVDLDVVARMDLLDFFKDECE----QR----GATIVYATHIFDG--LETWATHLA-YI 224 (294)
Q Consensus 166 ~~----------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~----~~----g~tviivsHd~~~--~~~~~d~v~-~l 224 (294)
+. +|++++|||||+|||+..+.++++.|+++++ +. ..+|+++||+++. ++++||++. .|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 99 9999999999999999999999999998852 22 3678899999987 999999985 34
Q ss_pred eCC
Q 022663 225 QDG 227 (294)
Q Consensus 225 ~~G 227 (294)
..|
T Consensus 252 peg 254 (413)
T 1tq4_A 252 PIY 254 (413)
T ss_dssp CGG
T ss_pred ccc
Confidence 344
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=8.8e-27 Score=195.51 Aligned_cols=80 Identities=13% Similarity=0.001 Sum_probs=68.6
Q ss_pred cccccccCCHHHHHHHHHHHH-----HccCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe---CChhH
Q 022663 144 LQWRMHKVSDGQRRRVQICMG-----LLHPFKVLLLDE--ITVDLDVVARMDLLDFFKDECEQRGATIVYAT---HIFDG 213 (294)
Q Consensus 144 ~~~~~~~LSgGqkqRv~lAra-----L~~~p~iLlLDE--Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivs---Hd~~~ 213 (294)
.++++.+||||||||++||+| ++.+|++||||| ||++||+..+..+.+++.+ .+.|+|++| ||.++
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchH
Confidence 456788999999999999996 999999999999 9999999999888888764 467788888 59999
Q ss_pred HHhhhceEEEeeCCeEEe
Q 022663 214 LETWATHLAYIQDGELRR 231 (294)
Q Consensus 214 ~~~~~d~v~~l~~G~i~~ 231 (294)
+..+|++ .+|+++.
T Consensus 146 ~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 146 VKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC----TTCEEEE
T ss_pred HHHHHhc----CCcEEEE
Confidence 9999998 3455544
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=4.4e-29 Score=225.72 Aligned_cols=163 Identities=14% Similarity=0.062 Sum_probs=113.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
+|+++||+++|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|.|...... .
T Consensus 101 ~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q-----------~ 161 (305)
T 2v9p_A 101 FFNYQNIELITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANH-----------K 161 (305)
T ss_dssp HHHHTTCCHHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGT-----------T
T ss_pred eEEEEEEEEEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecC-----------c
Confidence 589999999996 36999999999999999999999999999999999976 4555432110 0
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHH-cCCCcccccccCCHHHHHHHHHHHHHccCCCE
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL-LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKV 171 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~i 171 (294)
..++...... .++.+.. ... ....+.++. +.-.++ +..|||||||| ||||+.+|+|
T Consensus 162 ~~lf~~ti~~----------------~ni~~~~-~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~i 218 (305)
T 2v9p_A 162 SHFWLASLAD----------------TRAALVD-DAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPL 218 (305)
T ss_dssp SGGGGGGGTT----------------CSCEEEE-EEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCE
T ss_pred cccccccHHH----------------HhhccCc-ccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCE
Confidence 0000000000 0000100 000 122334444 221123 77999999999 9999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 172 LlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
|| |++||+.++..+.. +||++..+ ..||+| +|++|++++.|+++++
T Consensus 219 Ll----Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 219 LV----TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp EE----EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred EE----ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 99 99999999877752 28998865 589999 9999999999999887
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=1.2e-27 Score=205.09 Aligned_cols=169 Identities=12% Similarity=0.001 Sum_probs=95.7
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
.++++| .+|++|++++|+||||||||||+|+|+|++.. +.+.+..............+.+..+..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-----i~~~~~~~~~~~~~~~~~~i~~~~q~~-------- 73 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-----LHFSVSATTRAPRPGEVDGVDYHFIDP-------- 73 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-----CEECCCEESSCCCTTCCBTTTBEECCH--------
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-----eEEcccccccCCcccccCCCeeEecCH--------
Confidence 467888 79999999999999999999999999997631 111111000000000001122222111
Q ss_pred cccccccccHHHHh------hc---CCCCcHHHHHH-HH---------HHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663 109 EIPLQGDFSAEHMI------FG---VEGSDPVRRER-LI---------ELLDID--LQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 109 ~~~~~~~~~~~~~~------~~---~~~~~~~~~~~-~l---------~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
..+..++..+.+ +. ..........+ +. +.+++. .++++.+|| +|+.
T Consensus 74 --~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~ 140 (207)
T 1znw_A 74 --TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA 140 (207)
T ss_dssp --HHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE
T ss_pred --HHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE
Confidence 001111111000 00 00111111111 11 122221 245566777 8999
Q ss_pred CCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 168 PFKVLLLDEITVDL----DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 168 ~p~iLlLDEPt~gL----D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
+|++++|||||+++ |+..+..+.+++.++.++.|.|+|+||||++++..+||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 78899999999999876668999999999999999999999885
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.91 E-value=4.9e-24 Score=196.05 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=70.5
Q ss_pred ccccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 145 QWRMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 145 ~~~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..++++|.++.. .|.|||+||||.+ +..+|
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGGC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHHhC
Confidence 4568899999999 67888888999999999999999999999999999998754 4789999999965 56789
Q ss_pred ceEEEee
Q 022663 219 THLAYIQ 225 (294)
Q Consensus 219 d~v~~l~ 225 (294)
|++++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.91 E-value=1.1e-24 Score=201.40 Aligned_cols=85 Identities=26% Similarity=0.242 Sum_probs=76.1
Q ss_pred cccc-cCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 146 WRMH-KVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 146 ~~~~-~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
+++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++ +.|+|++||+ +.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~~-- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-AP-- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-CT--
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-cc--
Confidence 4566 79999999999999999 899999999999999999999999998764 2699999994 43
Q ss_pred hhhceEEEeeCCeEEecccHHHH
Q 022663 216 TWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 216 ~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
.||++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=8.1e-27 Score=201.74 Aligned_cols=183 Identities=9% Similarity=-0.045 Sum_probs=98.3
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccc-cccCCcccccccccccccccC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQL-VCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 108 (294)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |.+.+ +.+....... .....+.+.++..........
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4689999999999999999999999999999999976 4 55665 4432110000 000112222111000000000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHH-----HHHHccCCCEEEeeCCCCCCCH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQI-----CMGLLHPFKVLLLDEITVDLDV 183 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~l-----AraL~~~p~iLlLDEPt~gLD~ 183 (294)
+..+....+.....++ ......+++++...+.. ...+|||||+||++| |++|+.+|++++|||||+++|.
T Consensus 86 ~~~~l~~~~~~~~~~g---~~~~~i~~~l~~~~~~i--l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYG---TLKSEYDKAKEQNKICL--FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp TTCEEEEEEETTEEEE---EEHHHHHHHHHTTCEEE--EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred ccchhhhhhcccccCC---CcHHHHHHHHhCCCcEE--EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 0000000000000111 12233455555433211 115799999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------cCcEEEEEeCChhHHHhhhceEE
Q 022663 184 VARMDLLDFFKDECEQ------RGATIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 184 ~~~~~l~~~l~~~~~~------~g~tviivsHd~~~~~~~~d~v~ 222 (294)
.+...+.+.|.+..++ .....|+++||++++...+++++
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9998998888776543 23445555555555555544443
No 77
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.90 E-value=6.4e-25 Score=213.02 Aligned_cols=153 Identities=15% Similarity=0.046 Sum_probs=113.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccc
Q 022663 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGD 115 (294)
Q Consensus 36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (294)
+..|.+|++++|+||||||||||+++++|...+.+...+.+....... .+....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~---------------~l~~~~----------- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA---------------QLLRNA----------- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH---------------HHHHHH-----------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH---------------HHHHHH-----------
Confidence 458999999999999999999999999997766422223322221100 000000
Q ss_pred ccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH-----HHHH
Q 022663 116 FSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV-----ARMD 188 (294)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~-----~~~~ 188 (294)
..++ .+. .++ ..+++. .+.++.+|||||+||+++|+++..+|++||+| ||++||.. .+..
T Consensus 329 -----~~~g---~~~---~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 329 -----YSWG---MDF---EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp -----HTTS---CCH---HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred -----HHcC---CCH---HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 0011 111 111 123332 35678899999999999999999999999999 99999999 9999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCCh----------hHHHhhhceEEEeeCCe
Q 022663 189 LLDFFKDECEQRGATIVYATHIF----------DGLETWATHLAYIQDGE 228 (294)
Q Consensus 189 l~~~l~~~~~~~g~tviivsHd~----------~~~~~~~d~v~~l~~G~ 228 (294)
+.+++..++ +.|.|||++||+. ..+..+||+|++|++|+
T Consensus 396 i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999998765 5699999999999 78888999999999886
No 78
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.90 E-value=2.6e-24 Score=193.80 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=113.5
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc-eE-EecCCcccccccccccCCcccccccccccc-cc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-VV-QVLNRSSFHDTQLVCSGDLSYLGGSWSKTV-GS 106 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g-~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 106 (294)
++|+++++.|++|++++|+||||||||||++.|+|...+. .| .+ .+.+..... .....+ ..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~~~---------------~~~~r~~~~ 86 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESVE---------------ETAEDLIGL 86 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSCHH---------------HHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCCHH---------------HHHHHHHHH
Confidence 5799999999999999999999999999999999988775 33 34 332221100 000000 00
Q ss_pred cCcccc--cccccHHHHhhcCCCCc-HHHHHHHHHHcCCCcccccccCCHHH-HHHHHHHHHHccCCCEEEeeCCCC---
Q 022663 107 AGEIPL--QGDFSAEHMIFGVEGSD-PVRRERLIELLDIDLQWRMHKVSDGQ-RRRVQICMGLLHPFKVLLLDEITV--- 179 (294)
Q Consensus 107 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~LSgGq-kqRv~lAraL~~~p~iLlLDEPt~--- 179 (294)
.....+ ...+....+ .... ......+++...+.....+..+|.++ +||+. |+++..+|++||+||||+
T Consensus 87 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 87 HNRVRLRQSDSLKREII----ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HTTCCGGGCHHHHHHHH----HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred HcCCChhhccccccCCC----CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 000000 000000000 0000 01122222222333334456789998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh--h--------------------HHHhhhceEEEeeCCeE
Q 022663 180 D---LDV-VARMDLLDFFKDECEQRGATIVYATHIF--D--------------------GLETWATHLAYIQDGEL 229 (294)
Q Consensus 180 g---LD~-~~~~~l~~~l~~~~~~~g~tviivsHd~--~--------------------~~~~~~d~v~~l~~G~i 229 (294)
+ +|. .....+.+.|++++++.|+|||++||+. + .+..+||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 455 6677899999999887899999999995 5 78889999999999875
No 79
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=2.7e-26 Score=211.47 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=134.2
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++++++++++.|+. +..+++++ |+|.+|++++|+||||||||||+++|+|+..++ .|.+.+.|.+...-..
T Consensus 43 ~~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~G~~~~ev~~---- 114 (347)
T 2obl_A 43 PDPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD-IIVLALIGERGREVNE---- 114 (347)
T ss_dssp SCSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHH----
T ss_pred CCCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEecccHHHHHH----
Confidence 357999999999973 25699999 999999999999999999999999999988776 7777777754211000
Q ss_pred CCcccccc-cccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHc---CCC---cccccccCCHHHHHHHHHHH
Q 022663 91 GDLSYLGG-SWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL---DID---LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~l~---~~~~~~~LSgGqkqRv~lAr 163 (294)
.+.+... .....+.+..+.. ......... ......+.+.+ +.. .-..+.+||+|| |||++|
T Consensus 115 -~i~~~~~~~~~~~v~~~~~~~---~~~~~r~~~------~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 115 -FLALLPQSTLSKCVLVVTTSD---RPALERMKA------AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp -HHTTSCHHHHTTEEEEEECTT---SCHHHHHHH------HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred -HHHhhhhhhhhceEEEEECCC---CCHHHHHHH------HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 0000000 0001111111000 000000000 00000111111 111 114678999999 899999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH-hcCc-----EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE-QRGA-----TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237 (294)
Q Consensus 164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~-~~g~-----tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 237 (294)
+.+|++ |+|||+..+..+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+|+.++++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHH
Confidence 688887 999999999999999988753 3477 9999999999 77999999999999999988876
Q ss_pred HH
Q 022663 238 LD 239 (294)
Q Consensus 238 ~~ 239 (294)
+.
T Consensus 253 ~~ 254 (347)
T 2obl_A 253 EN 254 (347)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=9.5e-26 Score=206.71 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=103.0
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcc
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI 110 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (294)
+++++||+|++|++++|+||||||||||+++|+|++.|+ .|.+.+.+..... . ......++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~-----------~--~~~~~~i~----- 220 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIV-----------F--KHHKNYTQ----- 220 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCC-----------C--SSCSSEEE-----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccc-----------c--ccchhEEE-----
Confidence 789999999999999999999999999999999998876 8888877643110 0 00000000
Q ss_pred cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663 111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190 (294)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~ 190 (294)
+ ... |||+||++||+||..+|++|||||||+. +++
T Consensus 221 -~-----------------------------------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~ 255 (330)
T 2pt7_A 221 -L-----------------------------------FFG--GNITSADCLKSCLRMRPDRIILGELRSS-------EAY 255 (330)
T ss_dssp -E-----------------------------------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHH
T ss_pred -E-----------------------------------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHH
Confidence 0 000 8999999999999999999999999982 356
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 191 ~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 229 (294)
++|..+. ..+.|+|+++|+.+ +...|||+++|.+|..
T Consensus 256 ~~l~~~~-~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 256 DFYNVLC-SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHH-TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHHHHh-cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 6676653 32357999999999 7778999999998864
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.90 E-value=6.4e-24 Score=218.87 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=114.3
Q ss_pred cccEEEcc-----eEEEcCCCCCCCceeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEec
Q 022663 11 LNSIKVCG-----MQFSYEGNDKPPLFYDFNLGISP-------GSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVL 77 (294)
Q Consensus 11 ~~~l~~~~-----ls~~y~~~~~~~iL~~vsl~i~~-------Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~ 77 (294)
.++|++++ |++.|.+ +..+++|++|++++ |++++|+||||||||||||+| |++.+- ..|
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG----- 819 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMG----- 819 (1022)
T ss_dssp CCCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTT-----
T ss_pred CceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhhee-----
Confidence 34799999 9999943 25799999999987 999999999999999999999 976431 000
Q ss_pred CCcccccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHH
Q 022663 78 NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRR 157 (294)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkq 157 (294)
.++++... .+ ..... ++..-+.. + ......+++|+++++
T Consensus 820 ----------------~~Vpq~~~-~l------~v~d~------I~~rig~~-d-----------~~~~~~stf~~em~~ 858 (1022)
T 2o8b_B 820 ----------------CYVPAEVC-RL------TPIDR------VFTRLGAS-D-----------RIMSGESTFFVELSE 858 (1022)
T ss_dssp ----------------CCEESSEE-EE------CCCSB------EEEECC---------------------CHHHHHHHH
T ss_pred ----------------EEeccCcC-CC------CHHHH------HHHHcCCH-H-----------HHhhchhhhHHHHHH
Confidence 01111100 00 00000 00000000 0 011234577887775
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663 158 RVQICMGLLHPFKVLLLDEITVDLDVVAR-MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~-~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 230 (294)
+++|++++.+|+++||||||+|+|+... ..++++|..+.++.|.++|++||+++++..+||++.++ +|++.
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999999999999999875 45788888776545899999999999999999999886 47776
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.89 E-value=1.2e-25 Score=213.19 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=137.7
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~ 91 (294)
++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+..++ .|.+.+.|.....-.... ..
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~G~r~~ev~~~~-~~ 204 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLIGERGREVKDFI-EN 204 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHH-HT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEeceecHHHHHHH-Hh
Confidence 57999999999973 25699999 999999999999999999999999999988776 788888886311000000 00
Q ss_pred CcccccccccccccccCc--ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663 92 DLSYLGGSWSKTVGSAGE--IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL 166 (294)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~ 166 (294)
.. ....+.+.+.++++ .+....++..+.... ..+....-+.. .-..+..||+|| |||+|| +
T Consensus 205 ~~--~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~--------~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 205 IL--GPDGRARSVVIAAPADVSPLLRMQGAAYATR--------IAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp TT--HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH--------HHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---T
T ss_pred hc--cccccCceEEEEECCCCCHHHHHHHHHHHHH--------HHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---h
Confidence 00 00011122233222 111222222211100 00111110110 112367899999 999999 8
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH---hcCc-----EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECE---QRGA-----TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~---~~g~-----tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
.+|++ |+|||+..+..+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+++..+++.++
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 88888 999999999999999988754 2364 9999999999 678999999999999999888776
Q ss_pred HH
Q 022663 239 DE 240 (294)
Q Consensus 239 ~~ 240 (294)
..
T Consensus 343 ~~ 344 (438)
T 2dpy_A 343 GH 344 (438)
T ss_dssp TC
T ss_pred cC
Confidence 44
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=4.2e-25 Score=199.98 Aligned_cols=177 Identities=20% Similarity=0.184 Sum_probs=118.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc--cccccccCc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGE 109 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 109 (294)
++++||++++|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.+..... ... ..+ +..++++.+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~---~ql----~~~~~~~~i~~v~q 161 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVA 161 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHH---HHH----HHHHHhcCceEEEe
Confidence 46789999999999999999999999999999998886 78888888765321000 000 001 112233222
Q ss_pred c-c-ccccccHHHHh-hcC-CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCC
Q 022663 110 I-P-LQGDFSAEHMI-FGV-EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDL 181 (294)
Q Consensus 110 ~-~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gL 181 (294)
. . ..+..+..+.+ +.. ...+ ..+++.+++. .++++.+|| +||++||||++.+|+ +|+|| ||+||
T Consensus 162 ~~~~~~~~~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 162 EGDKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCS----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred cCCccCHHHHHHHHHHHHHHcCCc----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 1 1 22222222221 110 0000 0122333442 346778999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeC---------ChhHHHhhhceEEEeeCCeEE
Q 022663 182 DVVARMDLLDFFKDECEQRGATIVYATH---------IFDGLETWATHLAYIQDGELR 230 (294)
Q Consensus 182 D~~~~~~l~~~l~~~~~~~g~tviivsH---------d~~~~~~~~d~v~~l~~G~i~ 230 (294)
|+..+ +.++.++.|.|+|++|| .+..+..++..|.++..|+.+
T Consensus 234 D~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 234 NMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99754 23444456899999999 566777788899999999753
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.89 E-value=2e-23 Score=213.06 Aligned_cols=168 Identities=13% Similarity=0.088 Sum_probs=113.1
Q ss_pred cEEEcceEEEcCC--CCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC--------CcccCCCceEEecCCccc
Q 022663 13 SIKVCGMQFSYEG--NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--------KHMVGGRDVVQVLNRSSF 82 (294)
Q Consensus 13 ~l~~~~ls~~y~~--~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G--------~~~~~~~g~i~~~~~~~~ 82 (294)
.|.+++...-+-. .+...+++|++|++++|++++|+||||||||||||+|++ ...|.....
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 3555554433311 012468899999999999999999999999999999943 222210000
Q ss_pred ccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHH
Q 022663 83 HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lA 162 (294)
++.+.. ++.. +++ .+.....+|+|+++++.+|
T Consensus 702 ---------------------~~~~d~--i~~~------------------------ig~-~d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 ---------------------VSIVDC--ILAR------------------------VGA-GDSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp ---------------------EECCSE--EEEE------------------------CC----------CHHHHHHHHHH
T ss_pred ---------------------chHHHH--HHHh------------------------cCc-hhhHHHhHhhhHHHHHHHH
Confidence 000000 0000 000 0112346788888888888
Q ss_pred HHH--ccCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663 163 MGL--LHPFKVLLLDEITVDLDVVARMDL-LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238 (294)
Q Consensus 163 raL--~~~p~iLlLDEPt~gLD~~~~~~l-~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 238 (294)
+++ +.+|+++||||||+|||+.....+ +.++..+.++.|.++|++||+.+++ .+||++..+.+|++...++.+++
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 888 999999999999999999998888 5566655544589999999997755 68999999999998876655543
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=6.8e-25 Score=212.83 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=117.3
Q ss_pred cccEEEcceEEEcCCCCCCCceeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhCCcccCCCceEEecCCcccccccc
Q 022663 11 LNSIKVCGMQFSYEGNDKPPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKI--LAGKHMVGGRDVVQVLNRSSFHDTQL 87 (294)
Q Consensus 11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~--i~G~~~~~~~g~i~~~~~~~~~~~~~ 87 (294)
.++++.+++.+..++ .++|++|+| .|++|++++|+||||||||||+++ ++|+..|+ .|.+.+.+.+......
T Consensus 10 ~~~~~~~~~~~~~~g---~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~~~~~~~- 84 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTM---IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEETPQDII- 84 (525)
T ss_dssp ----CCSSCCEECCC---CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHH-
T ss_pred CCCccccccccccCC---chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeCCHHHHH-
Confidence 346777778765544 579999999 999999999999999999999999 68988775 7888888765311000
Q ss_pred cccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 88 VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
.....+.+..+.... ...+.. ..... . ....++++.+++. .++.+.+||+||
T Consensus 85 ~~~~~~g~~~q~~~~----------~~~l~~----~~~~~-~-~~~~~~l~~~~l~~~~~~~~~~LS~g~---------- 138 (525)
T 1tf7_A 85 KNARSFGWDLAKLVD----------EGKLFI----LDASP-D-PEGQEVVGGFDLSALIERINYAIQKYR---------- 138 (525)
T ss_dssp HHHGGGTCCHHHHHH----------TTSEEE----EECCC-C-SSCCSCCSSHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHcCCChHHhhc----------cCcEEE----EecCc-c-cchhhhhcccCHHHHHHHHHHHHHHcC----------
Confidence 000111221111100 000000 00000 0 0000011111111 234566777764
Q ss_pred ccCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH---------HhhhceEEEeeCCe
Q 022663 166 LHPFKVLLLDEITV-----DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL---------ETWATHLAYIQDGE 228 (294)
Q Consensus 166 ~~~p~iLlLDEPt~-----gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~---------~~~~d~v~~l~~G~ 228 (294)
|++++|||||+ +||+..+..+++++..+.+ .|+|||++||+++++ ..+||+|++|++|+
T Consensus 139 ---~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 139 ---ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp ---CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred ---CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 78999999998 4699999999999998865 599999999999984 56699999999843
No 86
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.88 E-value=5.7e-23 Score=179.40 Aligned_cols=182 Identities=19% Similarity=0.133 Sum_probs=102.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeE--EEeCCCEEEEECCCCCcHHHHHHHHh--CCcccCCCceEEecCCccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNL--GISPGSRCLLVGANGSGKTTLLKILA--GKHMVGGRDVVQVLNRSSFHDTQLV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl--~i~~Ge~~~liG~NGsGKSTLlk~i~--G~~~~~~~g~i~~~~~~~~~~~~~~ 88 (294)
+++++.++..|.+ |+.+ + .|++|++++|+||||||||||+++|+ |+..+. .+.+.+.+........
T Consensus 6 ~~~~~~i~tg~~~------lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-- 75 (251)
T 2ehv_A 6 YQPVRRVKSGIPG------FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG-EPGVFVTLEERARDLR-- 75 (251)
T ss_dssp --CCCEECCSCTT------TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHH--
T ss_pred ccccceeecCCHh------HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEEccCCHHHHH--
Confidence 6778888877743 3333 2 78999999999999999999999999 543443 5555554433211000
Q ss_pred ccCCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHcc
Q 022663 89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLH 167 (294)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~ 167 (294)
.....+++..+ ....+.++..+.... ....... .........+.++......+..-..
T Consensus 76 ----------~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 76 ----------REMASFGWDFEKYEKEGKIAIVDGVSS---VVGLPSE--------EKFVLEDRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp ----------HHHHTTTCCHHHHHHTTSEEEEC------------------------------CCHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHcCCChHHHhhcCCEEEEEcccc---ccccccc--------cceeccCcccHHHHHHHHHHHHHhh
Confidence 00001111100 000000000000000 0000000 0001112234455555555555568
Q ss_pred CCCEEEeeCCCCCCC-----HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH---------Hhhh-ceEEEeeC
Q 022663 168 PFKVLLLDEITVDLD-----VVARMDLLDFFKDECEQRGATIVYATHIFDGL---------ETWA-THLAYIQD 226 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD-----~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~---------~~~~-d~v~~l~~ 226 (294)
+|+++++||||++|| +..+..+.+++..+. +.|+|||++||+++++ ..+| |+|++|++
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~-~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL-EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH-HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999999997 677777888888775 4599999999999998 6888 99999963
No 87
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.88 E-value=1.6e-22 Score=164.36 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=74.0
Q ss_pred cccccccCCHHHHHHHHHH------HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh
Q 022663 144 LQWRMHKVSDGQRRRVQIC------MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW 217 (294)
Q Consensus 144 ~~~~~~~LSgGqkqRv~lA------raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~ 217 (294)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||+||||.+ +..+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-HHHh
Confidence 3567899999999999876 899999999999999999999999999999998754 4899999999995 6789
Q ss_pred hceEEEe--eCCe
Q 022663 218 ATHLAYI--QDGE 228 (294)
Q Consensus 218 ~d~v~~l--~~G~ 228 (294)
||++++| .+|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 9999999 4564
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=7e-24 Score=195.81 Aligned_cols=175 Identities=20% Similarity=0.199 Sum_probs=116.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc--cccccccCcc
Q 022663 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGEI 110 (294)
Q Consensus 33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 110 (294)
.++||++++|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.+..... ... ..+ +..++++.+.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~---eql----~~~~~r~~i~~v~q~ 219 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVAE 219 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECCS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchh---HHH----HHHHHhcCeEEEEec
Confidence 4689999999999999999999999999999998876 78888888765321000 000 001 1122332221
Q ss_pred -c-ccccccHHHHh-hcC-CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCCC
Q 022663 111 -P-LQGDFSAEHMI-FGV-EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDLD 182 (294)
Q Consensus 111 -~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gLD 182 (294)
. ..+..+..+.+ +.. ...+ ..+++.+++. .++.+.+|| +||++||||++.+|+ +|+|| ||+|||
T Consensus 220 ~~~~~p~~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD 291 (359)
T 2og2_A 220 GDKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLN 291 (359)
T ss_dssp SSSCCHHHHHHHHHHHHHHTTCS----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGG
T ss_pred ccccChhhhHHHHHHHHHhCCCH----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCC
Confidence 1 22222222221 110 0000 0122333442 345678899 999999999999999 99999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeC---------ChhHHHhhhceEEEeeCCeE
Q 022663 183 VVARMDLLDFFKDECEQRGATIVYATH---------IFDGLETWATHLAYIQDGEL 229 (294)
Q Consensus 183 ~~~~~~l~~~l~~~~~~~g~tviivsH---------d~~~~~~~~d~v~~l~~G~i 229 (294)
+..+. ..+.++.|.|+|++|| .+..+..++..|.++..|+.
T Consensus 292 ~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 292 MLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 97652 3344456899999999 45667777889999999975
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.87 E-value=2.8e-22 Score=204.06 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=98.0
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..|++|++|++++|++++|+||||||||||||+|+++......|.. .+... ..++.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~---------------------vpa~~-~~i~~~d 717 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY---------------------VPAEE-ATIGIVD 717 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC---------------------BSSSE-EEEECCS
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc---------------------ccchh-hhhhHHH
Confidence 5789999999999999999999999999999999874321100100 00000 0000000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~ 188 (294)
.++..+... + ......+.+|+||+|++.|+++ +.+|+++||||||+|||+.....
T Consensus 718 --~i~~~ig~~--------------d--------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 718 --GIFTRMGAA--------------D--------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp --EEEEEC--------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred --HHHHhCChH--------------H--------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 000000000 0 1124467899999999999999 89999999999999999999998
Q ss_pred HH-HHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 189 LL-DFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 189 l~-~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
+. .++..+.++.|.|+|++|||++++ .+||+
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 87 666666555689999999998765 45654
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=5.9e-22 Score=201.48 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=93.7
Q ss_pred HHHHcCCC---cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663 136 LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210 (294)
Q Consensus 136 ~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd 210 (294)
.+..+++. +++++.+|||||+|||+|||||+++|+ +|||||||+|||+..+.+++++|+++.+ .|.|||+||||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd 525 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHD 525 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCC
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 34446663 478899999999999999999999887 9999999999999999999999998864 59999999999
Q ss_pred hhHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663 211 FDGLETWATHLAYI------QDGELRRAEKLAELDELR 242 (294)
Q Consensus 211 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 242 (294)
++++.. ||+|++| ++|++++.|+++++....
T Consensus 526 ~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 526 EEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp HHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred HHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 998865 9999999 899999999999987653
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.86 E-value=1e-21 Score=169.22 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=110.9
Q ss_pred CCceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccccccccccc
Q 022663 29 PPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA 107 (294)
Q Consensus 29 ~~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
.+.|+++.. .+++|++++|+||||||||||++.|++...+. ++.+.+.+....... +. ......++.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~-------~~----~~~~~~~~~ 76 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDS-------II----RQAKQFNWD 76 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHH-------HH----HHHHHTTCC
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHH-------HH----HHHHHhcch
Confidence 457889988 89999999999999999999999999876554 333333322110000 00 000001100
Q ss_pred CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCC--CH
Q 022663 108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDL--DV 183 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gL--D~ 183 (294)
.+. .....+. ....... . ++ ........|.++.++...+.+...+|+ +|++||||+.+ |+
T Consensus 77 ~~~-----~~~~~~~-~~~~~~~-~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 77 FEE-----YIEKKLI-IIDALMK-E-------KE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp CGG-----GBTTTEE-EEECCC--------------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred HHH-----HhhCCEE-EEecccc-c-------cC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 000 0000000 0000000 0 00 001122459999998888888888999 99999999888 99
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHHhhhceEEEeeCCe
Q 022663 184 VARMDLLDFFKDECEQRGATIVYATHIF--------DGLETWATHLAYIQDGE 228 (294)
Q Consensus 184 ~~~~~l~~~l~~~~~~~g~tviivsHd~--------~~~~~~~d~v~~l~~G~ 228 (294)
..+..+++.|.+++++.|.|||++||+. ..+..+||+|++|++..
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999999999999877899999999999 55889999999998653
No 92
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.85 E-value=2.5e-21 Score=166.83 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=90.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccC------CCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVG------GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (294)
-|++|++++|+||||||||||+++|+|...+. +.+.+.+.+...... ..+....+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~-----------------~~i~~~~~-- 81 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-----------------ERIREIAQ-- 81 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH-----------------HHHHHHHH--
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH-----------------HHHHHHHH--
Confidence 79999999999999999999999999954432 122333333211000 00000000
Q ss_pred ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHH-HHHHHHHHHcc-------CCCEEEeeCCCCCCCH
Q 022663 112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQR-RRVQICMGLLH-------PFKVLLLDEITVDLDV 183 (294)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqk-qRv~lAraL~~-------~p~iLlLDEPt~gLD~ 183 (294)
. + ..... .+.+.+. ....++.+++ +.+..+++++. +|++|++||||+++|+
T Consensus 82 --------~--~---~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 82 --------N--R---GLDPD---EVLKHIY-----VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp --------H--T---TSCHH---HHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred --------H--c---CCCHH---HHhhcEE-----EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 0 0 00000 1122111 1223344433 33555555544 9999999999999998
Q ss_pred HH------------HHHHHHHHHHHHHhcCcEEEEEeCCh----hHHHhhhceEEEeeCCe
Q 022663 184 VA------------RMDLLDFFKDECEQRGATIVYATHIF----DGLETWATHLAYIQDGE 228 (294)
Q Consensus 184 ~~------------~~~l~~~l~~~~~~~g~tviivsHd~----~~~~~~~d~v~~l~~G~ 228 (294)
.. ...+++.|.+++++.|.|||++||+. ..+..+||++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 42 23678888888777899999999954 45899999999998753
No 93
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=1.2e-24 Score=197.93 Aligned_cols=173 Identities=10% Similarity=0.031 Sum_probs=113.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLG-----------------------ISPGSRCLLVGANGSGKTTLLKILAGKHMVG 69 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~-----------------------i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~ 69 (294)
.|++++|++.|. ++++++++. +++|+++||+||||||||||+++|+|++.+.
T Consensus 43 ~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 43 QIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred eEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 689999999994 577777765 8999999999999999999999999988764
Q ss_pred CCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHh-h----cCC-CCcHHHHHHHHHHcCCC
Q 022663 70 GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-F----GVE-GSDPVRRERLIELLDID 143 (294)
Q Consensus 70 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~l~~l~l~ 143 (294)
.|. . .+.++.+.. .+++. +..+.. + +.. ..+.+...++++.++-.
T Consensus 118 -~G~-----~------------~v~~v~qd~----------~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~ 168 (312)
T 3aez_A 118 -DHH-----P------------RVDLVTTDG----------FLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSG 168 (312)
T ss_dssp -TTC-----C------------CEEEEEGGG----------GBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred -CCC-----C------------eEEEEecCc----------cCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCC
Confidence 221 0 011111100 00111 111111 0 110 12234556677777632
Q ss_pred -cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-HhhhceE
Q 022663 144 -LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHL 221 (294)
Q Consensus 144 -~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~-~~~~d~v 221 (294)
.+.++.+|||||+||+++|++++.+|+|||||||+..+|+.. ..+. ...+ .+|+|+|+.+.. ..+++|.
T Consensus 169 ~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~---~~~D-~~I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 169 SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVS---DLFD-FSLYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGG---GGCS-EEEEEEECHHHHHHHHHHHH
T ss_pred cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHH---HhcC-cEEEEECCHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999998522 1122 2233 457778887654 4456776
Q ss_pred EEeeCCe
Q 022663 222 AYIQDGE 228 (294)
Q Consensus 222 ~~l~~G~ 228 (294)
+.+.++.
T Consensus 240 ~~~rd~~ 246 (312)
T 3aez_A 240 LAMRTTA 246 (312)
T ss_dssp HHHTTTG
T ss_pred HHHHhcc
Confidence 6665554
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=5.5e-21 Score=194.25 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=93.1
Q ss_pred HHHcCCC---cccccccCCHHHHHHHHHHHHHccC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHP--FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~--p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
+..+++. +++.+.+|||||+|||+||++|+.+ |++|||||||++||+...+.+++.|+++. +.|.|||+||||+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEEEECCCH
Confidence 4556663 5889999999999999999999998 59999999999999999999999999985 5699999999999
Q ss_pred hHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663 212 DGLETWATHLAYI------QDGELRRAEKLAELDEL 241 (294)
Q Consensus 212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 241 (294)
+++. .||+|++| ++|++++.|+++++...
T Consensus 584 ~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 584 DTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp HHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred HHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 9876 79999999 78999999999998764
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.84 E-value=3.7e-22 Score=177.13 Aligned_cols=142 Identities=12% Similarity=0.076 Sum_probs=98.8
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 92 (294)
.+++++|++. ++|+++| +++|++++|+||||||||||+++|+|++.++.+|.+.+.+.+..
T Consensus 5 ~~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~---------- 65 (261)
T 2eyu_A 5 IPEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE---------- 65 (261)
T ss_dssp -CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC----------
T ss_pred CCChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce----------
Confidence 4677888642 4899999 99999999999999999999999999887643677766654321
Q ss_pred cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663 93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172 (294)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL 172 (294)
+..+. ...++.+ ..+++. ...| |++||++|..+|++|
T Consensus 66 --~~~~~---~~~~v~q----------------------------~~~gl~----~~~l------~~~la~aL~~~p~il 102 (261)
T 2eyu_A 66 --YVFKH---KKSIVNQ----------------------------REVGED----TKSF------ADALRAALREDPDVI 102 (261)
T ss_dssp --SCCCC---SSSEEEE----------------------------EEBTTT----BSCH------HHHHHHHHHHCCSEE
T ss_pred --eecCC---cceeeeH----------------------------HHhCCC----HHHH------HHHHHHHHhhCCCEE
Confidence 11000 0000000 011111 1122 899999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
|+|||| |+.+...++ +. + +.|.+|++++|+.+ +..+|||++.|.
T Consensus 103 llDEp~---D~~~~~~~l---~~-~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 103 FVGEMR---DLETVETAL---RA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp EESCCC---SHHHHHHHH---HH-H-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred EeCCCC---CHHHHHHHH---HH-H-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 999999 988865443 32 3 35899999999988 567788876553
No 96
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=3.7e-21 Score=194.90 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=92.9
Q ss_pred HHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
+..+++. +++.+.+|||||+|||+||++|+.+| ++|||||||+|||+...+.+++.|+++. +.|.|||+||||+
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl 566 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCH
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH
Confidence 5556764 58899999999999999999999985 9999999999999999999999999985 5699999999999
Q ss_pred hHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663 212 DGLETWATHLAYI------QDGELRRAEKLAELDEL 241 (294)
Q Consensus 212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 241 (294)
+++. .||+|++| ++|++++.|+++++...
T Consensus 567 ~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 567 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9876 69999999 78999999999887653
No 97
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=6.2e-22 Score=173.72 Aligned_cols=159 Identities=13% Similarity=0.024 Sum_probs=87.8
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ . ....+.++++.
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~--~--------~~~~i~~v~~d--------- 67 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE--Q--------RQRKVVILSQD--------- 67 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC--G--------GGCSEEEEEGG---------
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc--c--------cCCceEEEeCC---------
Confidence 57999999999999999999999999999999999854 111111 0 00111111111
Q ss_pred cccccccccHHHHh-h--cCCC------CcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC
Q 022663 109 EIPLQGDFSAEHMI-F--GVEG------SDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179 (294)
Q Consensus 109 ~~~~~~~~~~~~~~-~--~~~~------~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~ 179 (294)
.++..++..++. + +... .+.+...+.++.+.-....++..||+||+||+++ ++++.+|+++|||||..
T Consensus 68 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 68 --RFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp --GGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred --cCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 111122222211 1 1000 1122233444444223466788999999999988 68889999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-hhHHHhhhceEEEeeCCe
Q 022663 180 DLDVVARMDLLDFFKDECEQRGATIVYATHI-FDGLETWATHLAYIQDGE 228 (294)
Q Consensus 180 gLD~~~~~~l~~~l~~~~~~~g~tviivsHd-~~~~~~~~d~v~~l~~G~ 228 (294)
..|.. +.++ .+.+|+++||+ ......+++++ ++|+
T Consensus 145 ~~~~~--------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 145 FYSQE--------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTSHH--------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccHH--------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 88753 1222 37899999997 44445555544 6664
No 98
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=2e-20 Score=188.79 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=93.5
Q ss_pred HHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663 136 LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210 (294)
Q Consensus 136 ~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd 210 (294)
.+..+++. +++.+.+|||||+|||+||++|+.+| .+|||||||++||+...+.++++|+++. +.|.|||+||||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcCCEEEEEcCC
Confidence 45567764 58899999999999999999999999 5999999999999999999999999985 469999999999
Q ss_pred hhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663 211 FDGLETWATHLAYI------QDGELRRAEKLAELDEL 241 (294)
Q Consensus 211 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 241 (294)
++++. .||+|++| ++|++++.|+++++.+.
T Consensus 441 l~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 441 LDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 99765 79999999 79999999999987654
No 99
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.83 E-value=6.1e-21 Score=192.42 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=100.9
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+++|++|+ ++|++++|+||||||||||||+|+|+......|.. .+.. ...++++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~---------------------vpa~-~~~i~~~~ 651 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY---------------------VPAQ-KVEIGPID 651 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC---------------------BSSS-EEEECCCC
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc---------------------cchh-cccceeHH
Confidence 5689999999 99999999999999999999999996432211110 0000 00111111
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~ 188 (294)
+ ++..+...+. .....+.+|+++++ ++.+...+.+|+++|||||++|+|+.....
T Consensus 652 ~--i~~~~~~~d~----------------------l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 652 R--IFTRVGAADD----------------------LASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp E--EEEEEC---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred H--HHhhCCHHHH----------------------HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 1 1111111100 01123457777765 444555689999999999999999987777
Q ss_pred H-HHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 189 L-LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 189 l-~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
+ +.++..+.++.|.++|++|||.+++ .+||++..+.+|++...
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEE
Confidence 5 6777776543589999999999875 48998877777766543
No 100
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=1.2e-22 Score=181.03 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=79.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHH-h
Q 022663 44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-I 122 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 122 (294)
.++|+||||||||||+|+|+|+..|+ .|.+.+.|.+..... ....+.+..+. ..+...++..+. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~-~G~i~~~g~~i~~~~---~~~~i~~v~q~----------~~~~~~ltv~d~~~ 69 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR-KASSWNREEKIPKTV---EIKAIGHVIEE----------GGVKMKLTVIDTPG 69 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCC---SCCEEEESCC--------------CCEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-CCccccCCcccCcce---eeeeeEEEeec----------CCCcCCceEEechh
Confidence 48999999999999999999988776 788877775431110 01112222211 111222222111 1
Q ss_pred hcCC---CCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663 123 FGVE---GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199 (294)
Q Consensus 123 ~~~~---~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~ 199 (294)
++.. ....+....+++. -..+..+.+|||||+||+++|||++. +++||||+++||+.. .++++.+.+
T Consensus 70 ~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~- 139 (270)
T 3sop_A 70 FGDQINNENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK- 139 (270)
T ss_dssp --CCSBCTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-
T ss_pred hhhhcccHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-
Confidence 1111 0111122222220 01245678999999999999999886 999999999999987 344444433
Q ss_pred cCcEEEEEeCChhH
Q 022663 200 RGATIVYATHIFDG 213 (294)
Q Consensus 200 ~g~tviivsHd~~~ 213 (294)
. .+||+|.|..+.
T Consensus 140 ~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 140 V-VNIIPVIAKADT 152 (270)
T ss_dssp T-SEEEEEETTGGG
T ss_pred c-CcEEEEEecccc
Confidence 3 789999887653
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.82 E-value=1.5e-20 Score=188.56 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=92.8
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cCCCceEEecCCcccccccccccCCccccccccccccccc
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA 107 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
..+++|+||+ |++++|+||||||||||||+|+|+.. +. .|.+.. . ....++++
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~-~G~~vp------a----------------~~~~i~~v 619 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ-VGSFVP------A----------------EEAHLPLF 619 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT-TTCCBS------S----------------SEEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc-cCceee------h----------------hccceeeH
Confidence 5689999999 99999999999999999999999754 33 333210 0 00011111
Q ss_pred CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHH--ccCCCEEEeeCC---CCCCC
Q 022663 108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL--LHPFKVLLLDEI---TVDLD 182 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL--~~~p~iLlLDEP---t~gLD 182 (294)
.+ ++..++..+ .....+|+|+++++.+|+++ +.+|+++||||| |++||
T Consensus 620 ~~--i~~~~~~~d-------------------------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 620 DG--IYTRIGASD-------------------------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp SE--EEEECCC-------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred HH--hhccCCHHH-------------------------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 11 111111110 01225799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 183 VVAR-MDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 183 ~~~~-~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
+.+. ..+++.|.+ .|.|+|++||+.+++. +|
T Consensus 673 ~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 673 GVAIATAVAEALHE----RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHH----HTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH-hh
Confidence 9876 467777754 4899999999998764 44
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.80 E-value=5.5e-19 Score=151.13 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=102.2
Q ss_pred CceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 30 PLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 30 ~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+.|+.+.. .+++|++++|+||||||||||++.|++ .. +.+.+.+........ ..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~~i~~~~~~~~-------------~~--------- 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVAYVDTEGGFSP-------------ER--------- 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEEEEESSCCCCH-------------HH---------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEEEEECCCCCCH-------------HH---------
Confidence 45777765 799999999999999999999999998 32 233433322210000 00
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHH--HHHHHHHHHHccC-CCEEEeeCCCCCCCHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQ--RRRVQICMGLLHP-FKVLLLDEITVDLDVVA 185 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGq--kqRv~lAraL~~~-p~iLlLDEPt~gLD~~~ 185 (294)
..+... ....+. +.+++.+ .+.++|+++ +++++.+++++.+ |+++|+||||+.+|+..
T Consensus 62 ---------~~~~~~-~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 62 ---------LVQMAE-TRGLNP---EEALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp ---------HHHHHH-TTTCCH---HHHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred ---------HHHHHH-hcCCCh---HHHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 000000 000111 1122211 234556654 5688888899986 99999999999999743
Q ss_pred --------HHHHHHHHHHHHHhcCcEEEEEeCChh-------------HHHhhhceEEEeeCC
Q 022663 186 --------RMDLLDFFKDECEQRGATIVYATHIFD-------------GLETWATHLAYIQDG 227 (294)
Q Consensus 186 --------~~~l~~~l~~~~~~~g~tviivsHd~~-------------~~~~~~d~v~~l~~G 227 (294)
...+++.|++++++.+.|||+++|... .+..+||++++|++.
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 244666688887777999999999876 577899999999865
No 103
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.79 E-value=4.5e-19 Score=158.31 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=95.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccccc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS 117 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (294)
.+++|++++|+||||||||||++.+++.+. .|.+ +.|..... .+.+.|+.. +... ..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~-~~g~~~~~------~~~v~~~~~----------e~~~-~~~- 83 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPD-LLEVGELP------TGPVIYLPA----------EDPP-TAI- 83 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCC-TTCCCCCC------CCCEEEEES----------SSCH-HHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCC-cCCCccCC------CccEEEEEC----------CCCH-HHH-
Confidence 578999999999999999999999998543 2222 11221100 011111100 0000 000
Q ss_pred HHHH-hhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC--CCCHHHH---HHH
Q 022663 118 AEHM-IFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV--DLDVVAR---MDL 189 (294)
Q Consensus 118 ~~~~-~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~--gLD~~~~---~~l 189 (294)
.... ..+. .........+++.+.+. .++.+..||+||.|++ ++++.+|++||+||||+ ++|.... ..+
T Consensus 84 ~~r~~~~g~-~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 84 HHRLHALGA-HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred HHHHHHHHh-hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 0000 0111 11223345566777653 4667889999997765 67888999999999999 9998544 788
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 190 LDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 190 ~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
++.|.+++++.|+|||+++|+.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCccc
Confidence 88898887777999999999987654
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=1.7e-20 Score=159.46 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=94.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc-----ccCCCceEEecCCcccccc-c
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-----MVGGRDVVQVLNRSSFHDT-Q 86 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~-----~~~~~g~i~~~~~~~~~~~-~ 86 (294)
+|+++|+++.|+. +++++ |++.+|.+++|+|+||||||||++.|+|.. .+. .|.....+....... .
T Consensus 3 ~l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~-~G~~~~~~~~~~~~~~~ 75 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT-PGRTQLINLFEVADGKR 75 (210)
T ss_dssp --------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEE
T ss_pred chhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC-CccceeeEEEEecCCEE
Confidence 5899999999963 57887 899999999999999999999999999976 332 333322110000000 0
Q ss_pred c-cccCCcc-ccc----ccccccccccCc-ccccccccHHHHhhcCC-CCc--HHHHHHHHHHcCCC---cccccccCCH
Q 022663 87 L-VCSGDLS-YLG----GSWSKTVGSAGE-IPLQGDFSAEHMIFGVE-GSD--PVRRERLIELLDID---LQWRMHKVSD 153 (294)
Q Consensus 87 ~-~~~~~~~-~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~l~l~---~~~~~~~LSg 153 (294)
. ...+... ... ..+...+....+ ........ +.+... ... ......+++..++. ...++..+|+
T Consensus 76 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 76 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLV---VLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEE---EEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEE---EEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 0 0000000 000 000000000000 00000000 000000 011 11233445555554 2566788999
Q ss_pred HHHHH-HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663 154 GQRRR-VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199 (294)
Q Consensus 154 GqkqR-v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~ 199 (294)
||+|| +..+++++.+|+++++|||||++|.....++++.|.++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 99999 89999999999999999999999999999999999887643
No 105
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=2e-21 Score=175.85 Aligned_cols=164 Identities=14% Similarity=0.047 Sum_probs=75.3
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC-cccCCCceEEecCCcccccccccccCCccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK-HMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 95 (294)
.||+++|++ +.++++++|+| +|+||||||||||+++|+|. ..++ +| +.+.|.+...... ...+.+
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~-~g-i~~~g~~~~~t~~---~~~~~~ 67 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE-RV-ISGAAEKIERTVQ---IEASTV 67 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC-CC-cccCCcccCCcce---EeeEEE
Confidence 478999975 57999999998 99999999999999999997 5554 45 4443332211000 001111
Q ss_pred ccccccccccccCcccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEe
Q 022663 96 LGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174 (294)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlL 174 (294)
..+. ......++..+.. ++......+....+.+.+.-..+.++.++|||||||+.+|||++ +|++
T Consensus 68 ~~q~----------~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 68 EIEE----------RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp EEC-------------CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEE
T ss_pred EecC----------CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeee
Confidence 1110 0000001100000 00000000000111111110124678899999999999999986 9999
Q ss_pred eCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663 175 DEITVD-LDVVARMDLLDFFKDECEQRGATIVYATHIFD 212 (294)
Q Consensus 175 DEPt~g-LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~ 212 (294)
||||++ ||+... ++++++..+.+.++|+++||+.
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999985 999873 4555554445789999999974
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.77 E-value=5.5e-21 Score=161.63 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=90.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccH-HH
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EH 120 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 120 (294)
|++++|+||||||||||+++|+|++. + .| +.++|..... +. .+...+++..+.. .+.... ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~-~G-i~~~g~~~~~---------~~----~~~~~ig~~~~~~-~g~~~~l~~ 63 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S-SG-VPVDGFYTEE---------VR----QGGRRIGFDVVTL-SGTRGPLSR 63 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H-TT-CCCEEEECCE---------EE----TTSSEEEEEEEET-TSCEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c-CC-EEEcCEecch---------hH----hhhceEEEEEEec-ccceehhhc
Confidence 78999999999999999999999876 4 56 6665543210 00 0111122111100 000000 00
Q ss_pred HhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHH-HHHH---HHccCCCEEEeeC--CCCCCCHHHHHHHHHHHH
Q 022663 121 MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRV-QICM---GLLHPFKVLLLDE--ITVDLDVVARMDLLDFFK 194 (294)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv-~lAr---aL~~~p~iLlLDE--Pt~gLD~~~~~~l~~~l~ 194 (294)
+.+... +.. ..-...++...+|+||++++ ++++ |++.+|++||||| |++.+|+.....+.+++.
T Consensus 64 ~~~~~~--~~~--------~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 64 VGLEPP--PGK--------RECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp CCCCCC--SSS--------CCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccccCC--ccc--------cccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 000000 000 00012344557999999988 4454 6899999999999 899999977666655553
Q ss_pred HHHHhcCcEEE----EEeCChhHHHhhhceEEEeeCCeEEec
Q 022663 195 DECEQRGATIV----YATHIFDGLETWATHLAYIQDGELRRA 232 (294)
Q Consensus 195 ~~~~~~g~tvi----ivsHd~~~~~~~~d~v~~l~~G~i~~~ 232 (294)
. ..++| .||||.. ..++|+|..+.+|+|+..
T Consensus 134 ----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 ----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp ----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred ----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 3 33444 3459873 234555555677887764
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.75 E-value=4.5e-19 Score=163.78 Aligned_cols=147 Identities=12% Similarity=0.125 Sum_probs=93.0
Q ss_pred ceEEEcCCCCCCCceeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 18 GMQFSYEGNDKPPLFYDFNL-------GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 18 ~ls~~y~~~~~~~iL~~vsl-------~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.++++|-.. ..+.|+++.+ .+.+|++++|+||||||||||+++|+|++.++.++.+...+.+..
T Consensus 93 ~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-------- 163 (356)
T 3jvv_A 93 GAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-------- 163 (356)
T ss_dssp EEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--------
T ss_pred EEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--------
Confidence 455555321 2345667665 678899999999999999999999999887753444432222110
Q ss_pred CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK 170 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~ 170 (294)
+... .....+.+... ....++..+ +||+||.++|+
T Consensus 164 ----~~~~---~~~~~v~q~~~----------------------------------~~~~~~~~~----~La~aL~~~Pd 198 (356)
T 3jvv_A 164 ----FVHE---SKKCLVNQREV----------------------------------HRDTLGFSE----ALRSALREDPD 198 (356)
T ss_dssp ----SCCC---CSSSEEEEEEB----------------------------------TTTBSCHHH----HHHHHTTSCCS
T ss_pred ----hhhh---ccccceeeeee----------------------------------ccccCCHHH----HHHHHhhhCcC
Confidence 0000 00000000000 000112211 99999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
+||+|||| |.+.. +.+.+.+ +.|.+||+++|+.+.+ ..|||++.|..|
T Consensus 199 villDEp~---d~e~~----~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 199 IILVGEMR---DLETI----RLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp EEEESCCC---SHHHH----HHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred EEecCCCC---CHHHH----HHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 99999999 66554 3333444 3599999999999977 679999888543
No 108
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.75 E-value=3.3e-18 Score=142.43 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=70.0
Q ss_pred ccccccCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 145 QWRMHKVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
.+.+..||||||||++||++|+. +|+++||||||++||+.++..+.++|.++.+ +.++|+|||+... ..+||+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad~ 135 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-MANADK 135 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-HTTCSE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-HHhCCE
Confidence 35678999999999999999974 4699999999999999999999999988753 5789999999865 468999
Q ss_pred EEEe--eCCeE
Q 022663 221 LAYI--QDGEL 229 (294)
Q Consensus 221 v~~l--~~G~i 229 (294)
++.+ .+|..
T Consensus 136 i~~v~~~~g~s 146 (173)
T 3kta_B 136 IIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCEE
Confidence 9865 46653
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.75 E-value=1.3e-18 Score=160.36 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=97.8
Q ss_pred Cceeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCC---Cce-EEecCCcccccccccccCCcccccccccc
Q 022663 30 PLFYDF-NLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGG---RDV-VQVLNRSSFHDTQLVCSGDLSYLGGSWSK 102 (294)
Q Consensus 30 ~iL~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~---~g~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (294)
+.|+.+ ++.|++|++++|+||||||||||++.++|.. .|+. .|. +++++...+. ...+.+..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~------~~~i~~i~q---- 187 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQ---- 187 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC------HHHHHHHHH----
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC------HHHHHHHHH----
Confidence 356665 6899999999999999999999999999976 3432 244 5555543210 000000000
Q ss_pred cccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc-------cCCCEEEee
Q 022663 103 TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL-------HPFKVLLLD 175 (294)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~-------~~p~iLlLD 175 (294)
... .... .+++.+.+. . ..-|.+++|++.++++++ .+|++||+|
T Consensus 188 ------~~~----------------~~~~---~v~~ni~~~--~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 188 ------NRG----------------LDPD---EVLKHIYVA--R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp ------TTT----------------CCHH---HHGGGEEEE--E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred ------HcC----------------CCHH---HHhhCEEEE--e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 000 0000 111111110 0 012567888888888888 689999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663 176 EITVDLDVVA------------RMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234 (294)
Q Consensus 176 EPt~gLD~~~------------~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 234 (294)
|||++||+.. ..+++..|.+++++.+.|||+++|+.......++.......|++...+.
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 9999999852 4567777778777789999999999876654444455666677665543
No 110
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=2e-18 Score=167.02 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred ccccC-CHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663 147 RMHKV-SDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223 (294)
Q Consensus 147 ~~~~L-SgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~ 223 (294)
++.+| ||||+|||+||++|+.+| ++|||||||+|||+..+..+.++|.++.+ |.|||+||||++.+. +||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence 45667 999999999999999999 99999999999999999999999999864 789999999999776 6999999
Q ss_pred eeCC
Q 022663 224 IQDG 227 (294)
Q Consensus 224 l~~G 227 (294)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.73 E-value=1.4e-20 Score=160.81 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=96.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccH
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA 118 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (294)
.++|++++|+||||||||||+++|+|++.+ .+.+...+.. +.. . ..++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~------------~~~------------~---~~~~~ 51 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHY------------YKD------------L---GHLPL 51 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGC------------BCC------------C---TTSCH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCcc------------ccC------------c---ccccH
Confidence 578999999999999999999999997543 1111111100 000 0 00011
Q ss_pred HH-Hh--hcCC-CCcHHHHHHHHHHcCCC--cccccccCCHHH----HHHHHHHHHHccCCCEEEeeCCCCC-------C
Q 022663 119 EH-MI--FGVE-GSDPVRRERLIELLDID--LQWRMHKVSDGQ----RRRVQICMGLLHPFKVLLLDEITVD-------L 181 (294)
Q Consensus 119 ~~-~~--~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGq----kqRv~lAraL~~~p~iLlLDEPt~g-------L 181 (294)
.+ .. +... ..+.+...++++.+++. .+.++.++|+|| +||+++|++++.+|+++++||||++ |
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 52 EERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp HHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred HHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 00 1100 12234455666666653 456778999996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 182 DVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 182 D~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
|+.....+.+.+.+..++.|.|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998876556689999999985
No 112
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=1.8e-19 Score=177.40 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=101.3
Q ss_pred ccEEEcceEEEcCCCCCCCceeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDF----------NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~v----------sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
++++++||++.|+.. .+++|+.+ +|+++. ++|+|||||||||||++|+|+..|.++|.+.++|.+.
T Consensus 9 ~~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 9 GSVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp -----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred chhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 368899999999641 12355544 366665 9999999999999999999998774588888777653
Q ss_pred cccccccccCCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHH
Q 022663 82 FHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQ 160 (294)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~ 160 (294)
..... .. ...++..+++.++ ..+++..+..+.+ ......++... ..+| ++++.
T Consensus 85 ~~~~~----~~----~~~~~~~i~~v~Q~~~l~~~~tv~e~i-----------~~~~~~~~~~~----~~~s---~~~i~ 138 (608)
T 3szr_A 85 KLKKL----VN----EDKWRGKVSYQDYEIEISDASEVEKEI-----------NKAQNAIAGEG----MGIS---HELIT 138 (608)
T ss_dssp EEEEC----SS----SSCCEEEESCC---CCCCCHHHHHTTH-----------HHHHHHHHCSS----SCCC---SCCEE
T ss_pred EEecC----Cc----cccceeEEeeecccccCCCHHHHHHHH-----------HHHHHHhcCCc----cccc---hHHHH
Confidence 11000 00 0112333444433 2222222222111 11111111100 0011 12223
Q ss_pred HHHHHccCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCChhHHH----hh--------hceE
Q 022663 161 ICMGLLHPFKVLLLDEI------TVDLDVVARMDLLDFFKDECE-QRGATIVYATHIFDGLE----TW--------ATHL 221 (294)
Q Consensus 161 lAraL~~~p~iLlLDEP------t~gLD~~~~~~l~~~l~~~~~-~~g~tviivsHd~~~~~----~~--------~d~v 221 (294)
++.+....|+++|+||| |+|||+..+..+.+++.++.+ ..+.++++++||++.+. ++ +..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 33334568999999999 999999999999999998654 34788999999987332 22 2457
Q ss_pred EEeeCCeEEecccH
Q 022663 222 AYIQDGELRRAEKL 235 (294)
Q Consensus 222 ~~l~~G~i~~~g~~ 235 (294)
+++.++.++..|+.
T Consensus 219 ~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 219 GILTKPDLVDKGTE 232 (608)
T ss_dssp EEEECGGGSSSSST
T ss_pred EEecchhhcCcccH
Confidence 88887776665554
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.71 E-value=1.7e-16 Score=137.69 Aligned_cols=150 Identities=15% Similarity=0.290 Sum_probs=84.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC--Cccc----CCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAG--KHMV----GGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G--~~~~----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (294)
-|++|++++|+||||||||||++.|++ ...+ .+.+.+.+.+...+.... +. .+...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~------~~----~~~~~-------- 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER------LL----AVAER-------- 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH------HH----HHHHH--------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH------HH----HHHHH--------
Confidence 589999999999999999999999998 3433 124455444432110000 00 00000
Q ss_pred ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHH-HHHHHHHc--cCCCEEEeeCCCCCCCHH----
Q 022663 112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRR-VQICMGLL--HPFKVLLLDEITVDLDVV---- 184 (294)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqR-v~lAraL~--~~p~iLlLDEPt~gLD~~---- 184 (294)
++ ... +.+++.+. ....++..+... +.-+..++ .+|+++++|||++.+|+.
T Consensus 82 -----------~g---~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 82 -----------YG---LSG---SDVLDNVA-----YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp -----------TT---CCH---HHHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred -----------cC---CCH---HHHhhCeE-----EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence 00 000 01111111 112344444332 22233333 589999999999999985
Q ss_pred ---H-----HHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-------------------hhceEEEeeCC
Q 022663 185 ---A-----RMDLLDFFKDECEQRGATIVYATHIFDGLET-------------------WATHLAYIQDG 227 (294)
Q Consensus 185 ---~-----~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-------------------~~d~v~~l~~G 227 (294)
. ...++..|.+++++.|.|||+++|....... +||++++|+++
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 3456667777777779999999997765443 79999999875
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=3.9e-18 Score=160.46 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=85.8
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCccccccccccc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.+|.++||+++|++ +.+++++||+| +|+||||||||||+++|+|...+. +.+.+.+....
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---------- 70 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---------- 70 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------------
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc----------
Confidence 57999999999975 57999999998 999999999999999999987542 11111110000
Q ss_pred CCcccccccccccccccCc-ccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccC
Q 022663 91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHP 168 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~ 168 (294)
... ...+++..+ ..+...++..+. .++...........+.+.+ -..++.+++||++|||+++.+
T Consensus 71 -t~~------~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i-------~~~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 71 -TVQ------VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI-------DSKFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp -CCE------EEEEECC------CEEEEEEECC-----------CHHHHHHH-------HHHHHHHTTTSCC-CCCCCCC
T ss_pred -cee------eeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhccC
Confidence 000 000111111 001111111110 0000000000011111111 124667788999999999999
Q ss_pred CC---EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663 169 FK---VLLLDEIT-VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG 213 (294)
Q Consensus 169 p~---iLlLDEPt-~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~ 213 (294)
|+ +|++|||| ++||+... +++..+. . +.+||+|.|-.+.
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKADT 179 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTTS
T ss_pred CCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcccC
Confidence 99 99999999 69998763 3444443 2 6788888876553
No 115
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.68 E-value=1.6e-17 Score=150.31 Aligned_cols=154 Identities=21% Similarity=0.145 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc--cccccccCcc-ccccccc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGEI-PLQGDFS 117 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~ 117 (294)
+|++++|+||||||||||+++|+|++.++ +|.+.+.+.+.+.... .... ..+ +..++++++. ...+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a------~~ql-~~~~~~~~i~~v~q~~~~~p~~~ 172 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAG------GTQL-SEWGKRLSIPVIQGPEGTDSAAL 172 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTT------THHH-HHHHHHHTCCEECCCTTCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhH------HHHH-HHHHHhcCceEEEeCCCCCHHHH
Confidence 79999999999999999999999998886 7888888876532110 0000 001 1122222221 1111112
Q ss_pred HHHHh-hcC-CCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663 118 AEHMI-FGV-EGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195 (294)
Q Consensus 118 ~~~~~-~~~-~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~ 195 (294)
..+.+ +.. ...+ ..+++..+. .+.....++..++||++||||++.+|+.++| .||+.+...+++.+..
T Consensus 173 v~~~v~~~~~~~~d----~~llDt~G~-~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~ 242 (304)
T 1rj9_A 173 AYDAVQAMKARGYD----LLFVDTAGR-LHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKK 242 (304)
T ss_dssp HHHHHHHHHHHTCS----EEEECCCCC-CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHH
T ss_pred HHHHHHHHHhCCCC----EEEecCCCC-CCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHH
Confidence 21111 000 0000 000011111 1112222444558999999999999994444 4555544556666766
Q ss_pred HHHhcCcEEEEEeCChh
Q 022663 196 ECEQRGATIVYATHIFD 212 (294)
Q Consensus 196 ~~~~~g~tviivsHd~~ 212 (294)
+.++.+.|+|++||+.+
T Consensus 243 ~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 243 FHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHCCSEEEEECTTS
T ss_pred HHHHcCCcEEEEECCcc
Confidence 66666899999999854
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.67 E-value=2.2e-19 Score=166.54 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=99.8
Q ss_pred ceeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhCCcccCCC----ceEEecCCcccccccccccCCcccccccccccc
Q 022663 31 LFYDFNLGISP--GSRCLLVGANGSGKTTLLKILAGKHMVGGR----DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTV 104 (294)
Q Consensus 31 iL~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (294)
+.+.|+++|.+ |++++|+||||||||||+|+|+|++.++ . |.+.+.+.... ....+....+ ..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~-~~~e~G~i~i~~~~~~--------~~~~~~~~~~-~~I 226 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT-SAWEYGREFVFEKLGG--------DEQAMQYSDY-PQM 226 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE-EECCTTHHHHHHSSSS--------CTTSSCTTTH-HHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC-cchhhHHHHHHhhcCC--------CcccCChhHH-HHH
Confidence 35679999999 9999999999999999999999987765 3 33322110000 0000000000 001
Q ss_pred cccCcccccccccHHHHhhcCCCCcHHHHHHHHHHc---CCC-cccccccCCHHHHHHHHHHHHHc-cCCCEEEeeC---
Q 022663 105 GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL---DID-LQWRMHKVSDGQRRRVQICMGLL-HPFKVLLLDE--- 176 (294)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~l~-~~~~~~~LSgGqkqRv~lAraL~-~~p~iLlLDE--- 176 (294)
.+..+.. ..+ .....+.+ +.. .+..+..+|+|++|+..+++++. .+|+++||||
T Consensus 227 ~~~~q~~---------~~~---------~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 227 ALGHQRY---------IDY---------AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp HHHHHHH---------HHH---------HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred HHHHHHH---------HHH---------HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 0000000 000 00000000 111 12234456778888888888874 6999999999
Q ss_pred CC------CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663 177 IT------VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ 225 (294)
Q Consensus 177 Pt------~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~ 225 (294)
|+ .++|+..+..+.+.|.++.++.+.+||+++|. ....++++++.+++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 65 58999999999999988876668999999976 45667777766554
No 117
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.63 E-value=6.1e-16 Score=143.63 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=68.3
Q ss_pred cccccCCHHHHHHH------HHHHHHccC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 146 WRMHKVSDGQRRRV------QICMGLLHP-FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 146 ~~~~~LSgGqkqRv------~lAraL~~~-p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
.++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++. .+.+||+|||+++ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH-HHhhC
Confidence 45678999999988 567889999 99999999999999999999999998753 2468999999987 57899
Q ss_pred ceEEEeeC
Q 022663 219 THLAYIQD 226 (294)
Q Consensus 219 d~v~~l~~ 226 (294)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.62 E-value=1.8e-16 Score=147.30 Aligned_cols=128 Identities=11% Similarity=0.097 Sum_probs=84.2
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcc
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI 110 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (294)
+|++++ +++|++++|+||||||||||+++|+|++.+...|.+...+.+.. +. +...++++.+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e------------~~---~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------YV---FKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC------------SC---CCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh------------hh---hccCceEEEee
Confidence 455554 78999999999999999999999999887653566654443210 00 00001100000
Q ss_pred cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663 111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190 (294)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~ 190 (294)
.+++ .+..| +.+|+++|..+|++|++|||+ |+....
T Consensus 190 ----------------------------~~g~----~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~--- 225 (372)
T 2ewv_A 190 ----------------------------EVGE----DTKSF------ADALRAALREDPDVIFVGEMR---DLETVE--- 225 (372)
T ss_dssp ----------------------------EBTT----TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred ----------------------------ecCC----CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence 0111 12334 469999999999999999999 776543
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663 191 DFFKDECEQRGATIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 191 ~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~ 222 (294)
.+++. + ..|.+|+.++|+.+ +...+||++
T Consensus 226 ~~l~~-~-~~g~~vi~t~H~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 226 TALRA-A-ETGHLVFGTLHTNT-AIDTIHRIV 254 (372)
T ss_dssp HHHHH-H-TTTCEEEECCCCCS-HHHHHHHHH
T ss_pred HHHHH-H-hcCCEEEEEECcch-HHHHHHHHH
Confidence 33433 3 35889999999966 666777764
No 119
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.61 E-value=1.2e-15 Score=144.17 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=67.9
Q ss_pred cccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663 148 MHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223 (294)
Q Consensus 148 ~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~ 223 (294)
+..||||||||++||++|+ .+|++|||||||++||+..+..+.++|.++.. .+.++|+|||+... ...||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEE
Confidence 4569999999999999999 58999999999999999999999999987643 37899999999765 457999999
Q ss_pred eeC
Q 022663 224 IQD 226 (294)
Q Consensus 224 l~~ 226 (294)
|..
T Consensus 409 ~~~ 411 (430)
T 1w1w_A 409 VYR 411 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.60 E-value=4.9e-16 Score=134.12 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=81.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCcccccccccccCCcccccccccccccccCcc-c
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI-P 111 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 111 (294)
.-.-..++|++++|+||||||||||+++|+|+.+| ...|.+.+.+..... + ....+++.++. .
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-------~--------e~~gi~y~fq~~~ 72 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-------G--------EVHGEHYFFVNHD 72 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-------T--------CCBTTTBEECCHH
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-------c--------cccCceEEECCHH
Confidence 33456899999999999999999999999998764 224444444432110 0 00111111110 0
Q ss_pred ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH
Q 022663 112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191 (294)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~ 191 (294)
.+..++... ..++.+.. ...+.|-.+++ +..++..++++||| ||+.++.++.+
T Consensus 73 ~f~~~~~~~--------------~f~E~~~~-----~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 73 EFKEMISRD--------------AFLEHAEV-----FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp HHHHHHHTT--------------CEEEEEEE-----TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred HHHHHHhcC--------------HHHHHHHH-----HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHH
Confidence 000000000 00000000 00111111221 34455668999999 99999999998
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663 192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239 (294)
Q Consensus 192 ~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 239 (294)
.+. .+.||+++||+++++.+ |+ +.+| .++++++.
T Consensus 126 ~l~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 126 KMP-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HCT-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred Hcc-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence 775 38899999999998776 43 6666 45666654
No 121
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.60 E-value=1.1e-14 Score=136.36 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=48.8
Q ss_pred cCCCEEEeeCCCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEEeCCh-------------------hHHH
Q 022663 167 HPFKVLLLDEITVDLDVVAR------------MDLLDFFKDECEQRGATIVYATHIF-------------------DGLE 215 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~------------~~l~~~l~~~~~~~g~tviivsHd~-------------------~~~~ 215 (294)
.+|+++++|||++.+|.... .++++.|.+++++.|.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997533 5688888888888899999999982 2356
Q ss_pred hhhceEEEeeCCe
Q 022663 216 TWATHLAYIQDGE 228 (294)
Q Consensus 216 ~~~d~v~~l~~G~ 228 (294)
.++|.+++|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998763
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.4e-16 Score=147.04 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=96.3
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSR--CLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~ 90 (294)
.|++++ +++|++ .+ |+++||+|++|++ ++|+||||||||||+|+|+|+.. .+.......... ..
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~~~~~~~~--------~~ 81 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-EGEPATHTQPGV--------QL 81 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSC--------EE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-cCCcCCCCCccc--------eE
Confidence 577788 889975 45 9999999999999 99999999999999999999742 111000000000 00
Q ss_pred CCcccccccccccccccCcccccccccHHH-HhhcCCC-----Cc------HHHHHHHHHHc-CCC------ccccc---
Q 022663 91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEG-----SD------PVRRERLIELL-DID------LQWRM--- 148 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~------~~~~~~~l~~l-~l~------~~~~~--- 148 (294)
..+.+..+.. .++..++..+ ..++... +. ......++... ++. .+.++
T Consensus 82 ~~i~~v~Q~~----------~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~ 151 (427)
T 2qag_B 82 QSNTYDLQES----------NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVC 151 (427)
T ss_dssp EEEEEEEEC------------CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEE
T ss_pred eeEEEEeecC----------ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEE
Confidence 0111111110 0001111100 0011000 00 11222333332 221 12221
Q ss_pred --------ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 149 --------HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 149 --------~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
..|+-.+ +.|+++|..++++|++|||+..|.+.....+.+.+.+..+..|.+|+.+|.|-
T Consensus 152 v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 152 LYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp EEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred EEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 2466555 79999999999999999999999999999999999874556799999999764
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.56 E-value=3.4e-16 Score=144.92 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=103.9
Q ss_pred EEcceEEE---cCCCCCCCce---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663 15 KVCGMQFS---YEGNDKPPLF---------YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82 (294)
Q Consensus 15 ~~~~ls~~---y~~~~~~~iL---------~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~ 82 (294)
++++++|+ |+.. ...+| +++||+|++|++++|+||||||||||+++|+|++.++ .|.+.+.+....
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVPEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSSCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCcccc
Confidence 66777777 6420 12344 9999999999999999999999999999999998875 888887654211
Q ss_pred ccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHH
Q 022663 83 HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQIC 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lA 162 (294)
.. ......++++. . .+ ....++++..++..|+
T Consensus 215 ~~-------------~~~~~~v~~v~-----------------~---q~---------------~~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 215 FL-------------PDHPNHVHLFY-----------------P---SE---------------AKEEENAPVTAATLLR 246 (361)
T ss_dssp CC-------------TTCSSEEEEEC-----------------C----------------------------CCHHHHHH
T ss_pred Cc-------------cccCCEEEEee-----------------c---Cc---------------cccccccccCHHHHHH
Confidence 00 00000111000 0 00 0001245556889999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663 163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228 (294)
Q Consensus 163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 228 (294)
.++..+|+.+++|||.. .++.++|..+. ....|++.++|+.. +...++|+..+..+.
T Consensus 247 ~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 247 SCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp HHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred HHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 99999999999999985 23455665553 22347899999966 778899999888764
No 124
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.55 E-value=1.3e-15 Score=126.81 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=39.7
Q ss_pred ccCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663 166 LHPFKVLLLDEITV-DLDVVARMDLLDFFKDECEQRGATIVYATHIFDG 213 (294)
Q Consensus 166 ~~~p~iLlLDEPt~-gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~ 213 (294)
+.+|++|+||||++ ++|+..+..+.+++.... +.++++|++||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChh
Confidence 34999999999985 999999999999987764 358999999998643
No 125
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.55 E-value=7.9e-16 Score=144.64 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=86.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (294)
-++++|+++.|++++|+|+|||||||||++|+|..+. +.+...... ...+..+.......+. +.+.+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~-------i~~~~ftTl-----~p~~G~V~~~~~~~~~-l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK-------IAPYPFTTL-----SPNLGVVEVSEEERFT-LADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE-------ECCCTTCSS-----CCEEEEEECSSSCEEE-EEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc-------ccCccccee-----cceeeEEEecCcceEE-EEecc
Confidence 4799999999999999999999999999999996321 111110000 0000000000000000 00000
Q ss_pred -ccccccHHHHhhcCCCCcHHHH------HHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH
Q 022663 112 -LQGDFSAEHMIFGVEGSDPVRR------ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184 (294)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~ 184 (294)
+.... .+ ......... +.++..+++. +.++.+||+|++|++++|++|+..|.+|++ |.+|+.
T Consensus 214 Gli~~a--~~----~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 214 GIIEGA--SE----GKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCCG--GG----SCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred ccccch--hh----hhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000 00 000000000 0111222233 466788999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEe
Q 022663 185 ARMDLLDFFKDECEQRGATIVYAT 208 (294)
Q Consensus 185 ~~~~l~~~l~~~~~~~g~tviivs 208 (294)
.. ..++.+.+..++.+.+++++|
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECC
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEE
Confidence 77 445555555555577777666
No 126
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.55 E-value=9.5e-18 Score=140.79 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHH------HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-hhHHHhhhceEEEe
Q 022663 152 SDGQRRRVQICM------GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI-FDGLETWATHLAYI 224 (294)
Q Consensus 152 SgGqkqRv~lAr------aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd-~~~~~~~~d~v~~l 224 (294)
|+|++|++.++. +++.+|+...+|+ +||+..+.. ++.+..+. +.+.++|.+||. ++.++++||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence 889998988888 8889998888884 899988888 88777663 347899999999 999999999998
Q ss_pred eCCeEEecccHHHH
Q 022663 225 QDGELRRAEKLAEL 238 (294)
Q Consensus 225 ~~G~i~~~g~~~~~ 238 (294)
++|+++..|+++-+
T Consensus 169 ~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 169 TNPRFIFCMAGDPL 182 (189)
T ss_dssp HCGGGSCC------
T ss_pred hCCcEEEeecCCch
Confidence 99999999887654
No 127
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.54 E-value=7.2e-15 Score=119.27 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=35.5
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 022663 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT-IVYATHI 210 (294)
Q Consensus 165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~t-viivsHd 210 (294)
++.+|++|++|||++ ++...+..+++++..+.. .|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 467899999999998 666668889999987654 4777 8888884
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.47 E-value=1e-15 Score=140.34 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=57.4
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
.+|+++++++.|+. ..+|+++||++.+|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.
T Consensus 28 ~~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~d~ 93 (337)
T 2qm8_A 28 TLAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAVDP 93 (337)
T ss_dssp HHHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECG
T ss_pred HHHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEEcC
Confidence 36889999999964 46899999999999999999999999999999999988776 77777766554
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.47 E-value=2.4e-15 Score=131.50 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=41.8
Q ss_pred ccccccCCHHHHHHHHHHHHH-ccCCCEEEee----CCCCCCCHHHHHHHHHHHHHHHHh
Q 022663 145 QWRMHKVSDGQRRRVQICMGL-LHPFKVLLLD----EITVDLDVVARMDLLDFFKDECEQ 199 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lAraL-~~~p~iLlLD----EPt~gLD~~~~~~l~~~l~~~~~~ 199 (294)
++++.+||| |+ +|+ +.+|++++|| |||++||+..+..+.+.|.++.++
T Consensus 147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 466788999 66 777 9999999999 999999999999999999887543
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=6.9e-16 Score=129.26 Aligned_cols=133 Identities=20% Similarity=0.080 Sum_probs=74.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccccc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS 117 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (294)
.+++|++++|+||||||||||+++|+|. ++ .|.+.+++.+...... ....+.+. .+... ...+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~-~g~i~i~~d~~~~~~~--~~~~~~~~-----------~~~~~-~~~~ 67 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG-VPKVHFHSDDLWGYIK--HGRIDPWL-----------PQSHQ-QNRM 67 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS-SCEEEECTTHHHHTCC--SSCCCTTS-----------SSHHH-HHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC-CCeEEEcccchhhhhh--cccccCCc-----------cchhh-hhHH
Confidence 5789999999999999999999999996 33 6777777654321100 00001111 11000 0111
Q ss_pred HHHHh-hc-----CCCCcHHHHHHHHHHcCCC----cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHH
Q 022663 118 AEHMI-FG-----VEGSDPVRRERLIELLDID----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187 (294)
Q Consensus 118 ~~~~~-~~-----~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~ 187 (294)
..+.+ +. ..... ...+.++..+.+. .+..+..+|+|++|+++++|++..+|+++ +|+....
T Consensus 68 v~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~ 138 (191)
T 1zp6_A 68 IMQIAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVA 138 (191)
T ss_dssp HHHHHHHHHHHHHHTSCE-EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHH
T ss_pred HHHHHHHHHHHHhccCCe-EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHH
Confidence 11110 00 00000 0000000000110 13345689999999999999999999876 6888877
Q ss_pred HHHHHHHHH
Q 022663 188 DLLDFFKDE 196 (294)
Q Consensus 188 ~l~~~l~~~ 196 (294)
.+++.+..+
T Consensus 139 ~~~~~~~~l 147 (191)
T 1zp6_A 139 DLHSQFADL 147 (191)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhcc
Confidence 777776554
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=9.7e-16 Score=125.68 Aligned_cols=63 Identities=17% Similarity=0.015 Sum_probs=53.7
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
++..++++.|++ ..+++++||+|++|++++|+||||||||||+|+|+|++ |. .|.+.+.+.+.
T Consensus 8 ~~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~-~G~V~~~g~~i 70 (158)
T 1htw_A 8 IPDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH-QGNVKSPTYTL 70 (158)
T ss_dssp ECSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC-CSCCCCCTTTC
T ss_pred cCCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC-CCeEEECCEee
Confidence 445677888864 46899999999999999999999999999999999988 65 78887777654
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.42 E-value=2.6e-12 Score=111.17 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=48.1
Q ss_pred cCCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HHhhhceEEEeeC
Q 022663 167 HPFKVLLLDEITVDL--DVVARMDLLDFFKDECEQRGATIVYATHIFDG--------LETWATHLAYIQD 226 (294)
Q Consensus 167 ~~p~iLlLDEPt~gL--D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--------~~~~~d~v~~l~~ 226 (294)
.+|+++++|+|++.+ |+....+++..|.+++++.|.|||+++|.... +..+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 66556666667777777789999999998775 5678999999975
No 133
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.40 E-value=4e-17 Score=157.40 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=100.9
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-----ccccCCcccccccccc--
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-----LVCSGDLSYLGGSWSK-- 102 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 102 (294)
.+++++++.+++|++++|+||||||||||+++|+|++.++ .|.+.+.+........ ...+..+......+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~-~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD-AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC-CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 4678899999999999999999999999999999998765 8888887754221100 0000000000000000
Q ss_pred --cccccCcccccccccHHHHh------h-cCCC---CcHHHHHHHHHHcCC-----C------cc---cccccCCHHHH
Q 022663 103 --TVGSAGEIPLQGDFSAEHMI------F-GVEG---SDPVRRERLIELLDI-----D------LQ---WRMHKVSDGQR 156 (294)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~------~-~~~~---~~~~~~~~~l~~l~l-----~------~~---~~~~~LSgGqk 156 (294)
....-++..+.+.+...+.. . +... .......++++.|.. . .+ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 00000011112222222111 0 1100 000112233333321 1 11 23446899999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE--EeCChhHHHhhhce
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY--ATHIFDGLETWATH 220 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii--vsHd~~~~~~~~d~ 220 (294)
||++++. + | |+|||+..+..+++.|.++. ..+.|+++ +||+++++...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHHHHHHHcCC
Confidence 9887651 1 7 99999988777777776654 34788875 99999999988863
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=1.3e-15 Score=143.44 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=86.9
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc----cc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ----LV 88 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~----~~ 88 (294)
.++++++++.|+. ..+|+++ +. .+|++++|+|||||||||||++|+|++.++ .|.+.+.+.+...... ..
T Consensus 143 ~~~l~~Lg~~~~~---~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~~~~q~~ 216 (418)
T 1p9r_A 143 RLDLHSLGMTAHN---HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGIGQTQ 216 (418)
T ss_dssp CCCGGGSCCCHHH---HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSSEEEE
T ss_pred CCCHHHcCCCHHH---HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccCCcceEE
Confidence 4567777777643 3578888 54 899999999999999999999999988776 6777766654311000 00
Q ss_pred ccCCccccccc-ccccccccCccccccc----ccHHHHh-hc---------CCCCcHHHHHHHHHHcCCCcccccccCCH
Q 022663 89 CSGDLSYLGGS-WSKTVGSAGEIPLQGD----FSAEHMI-FG---------VEGSDPVRRERLIELLDIDLQWRMHKVSD 153 (294)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~-~~---------~~~~~~~~~~~~l~~l~l~~~~~~~~LSg 153 (294)
....+.+.... .+..+...+...+.+. .+..+.+ +. ....+.......+..+++.....+..|||
T Consensus 217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSg 296 (418)
T 1p9r_A 217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLG 296 (418)
T ss_dssp CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEE
T ss_pred EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00001000000 0000000001111121 2332221 11 11112222233456677764457789999
Q ss_pred HHHHHHHHHHHHccCCCEEE
Q 022663 154 GQRRRVQICMGLLHPFKVLL 173 (294)
Q Consensus 154 GqkqRv~lAraL~~~p~iLl 173 (294)
||+|| |||+|+.+|+++.
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999876
No 135
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.38 E-value=4.4e-15 Score=123.33 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=75.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccccCCccccccccc-cccc----ccCccc-ccc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS-KTVG----SAGEIP-LQG 114 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~-~~~ 114 (294)
++++|+|+||||||||+++|+|++.+.+ .|.+.+++.+...... .+ ...++ ..++ +..+.. ++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~---~~-----~d~~r~~~ig~~~~~~~~~~~~~- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---EG-----KDSWKIYNSGADVVIASPVKLAF- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------------CHHHHHHHHTCEEEEECSSEEEE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc---cc-----hhHHHHHhcCCceEEECCCcEEE-
Confidence 5899999999999999999999888753 6788877765221000 00 00011 1122 111110 00
Q ss_pred cccHHHHhhcCCCCcHH--HHHHHHHH-cCCCccccc-ccCCHHHHHHHHHHHHHccCCCEE-------EeeCCCC---C
Q 022663 115 DFSAEHMIFGVEGSDPV--RRERLIEL-LDIDLQWRM-HKVSDGQRRRVQICMGLLHPFKVL-------LLDEITV---D 180 (294)
Q Consensus 115 ~~~~~~~~~~~~~~~~~--~~~~~l~~-l~l~~~~~~-~~LSgGqkqRv~lAraL~~~p~iL-------lLDEPt~---g 180 (294)
+. ...... ...++++. +. ..+..+ ..|||||+||++||||++.+|++. +-|.|.. -
T Consensus 74 -i~--------~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~ 143 (171)
T 2f1r_A 74 -IR--------RVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKW 143 (171)
T ss_dssp -EE--------ECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCE
T ss_pred -Ee--------cCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcc
Confidence 00 000011 23344444 43 222222 249999999999999999999873 3355532 2
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 022663 181 LDVVARMDLLDFFKDECEQ 199 (294)
Q Consensus 181 LD~~~~~~l~~~l~~~~~~ 199 (294)
+|......+.+++.+...+
T Consensus 144 f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 144 FRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp ECTTCHHHHHHHHHHHHTC
T ss_pred cCcccHHHHHHHHHHHHhc
Confidence 3445567888888776654
No 136
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.36 E-value=1.2e-15 Score=138.91 Aligned_cols=57 Identities=18% Similarity=-0.050 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA 218 (294)
Q Consensus 149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~ 218 (294)
.+||+||+||+..+++++.+|+++ ||| ..+.+.|+++. .+.+|+++||+...+..+.
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGGS
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHHh
Confidence 379999999999999999999987 999 67778887753 4789999999765544443
No 137
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.35 E-value=2.2e-12 Score=116.06 Aligned_cols=142 Identities=18% Similarity=0.050 Sum_probs=91.3
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 93 (294)
+.++++++.|+. .. ++++|+ +|++++|+|+||+||||+++.|+|.+.+. ++.+.+.+.+....
T Consensus 77 ~~~~~l~~~~~~---~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~--------- 139 (295)
T 1ls1_A 77 TVYEALKEALGG---EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRP--------- 139 (295)
T ss_dssp HHHHHHHHHTTS---SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCH---------
T ss_pred HHHHHHHHHHCC---CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccH---------
Confidence 556788888864 22 788888 99999999999999999999999987665 45555444332100
Q ss_pred ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663 94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173 (294)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl 173 (294)
.... ....+.+..++..-......+..+.+|.+|+.+...+++++|
T Consensus 140 ----------------------~~~~------------ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 140 ----------------------AARE------------QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp ----------------------HHHH------------HHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred ----------------------hHHH------------HHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0000 000112223332100000123344578899999889999999
Q ss_pred eeCC-CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 022663 174 LDEI-TVDLDVVARMDLLDFFKDECEQRGATIVYAT 208 (294)
Q Consensus 174 LDEP-t~gLD~~~~~~l~~~l~~~~~~~g~tviivs 208 (294)
+||| +.++|.....++.++..... ...+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEEe
Confidence 9999 99999988888777765432 234444444
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.34 E-value=3.1e-12 Score=116.69 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=92.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccccccccc--ccCc-ccccc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG--SAGE-IPLQG 114 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~ 114 (294)
..++|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.+.... .... ..+...++ ++.+ ....+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a------~eql-~~~~~~~gv~~v~q~~~~~p 196 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGA------IEQL-EEHAKRIGVKVIKHSYGADP 196 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTH------HHHH-HHHHHHTTCEEECCCTTCCH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccch------HHHH-HHHHHHcCceEEeccccCCH
Confidence 44789999999999999999999999998886 7788877766432110 0000 00111111 1111 11111
Q ss_pred cccHHHHhhcCCCCcHHHHHHHH-HHcCCC-ccccc--ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663 115 DFSAEHMIFGVEGSDPVRRERLI-ELLDID-LQWRM--HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190 (294)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l-~~l~l~-~~~~~--~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~ 190 (294)
..+..+.+ .... ...+.- .+... +.-..=+.+.-.+++++..++.+++||.++. . .+.
T Consensus 197 ~~~v~e~l-----------~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~------~~~ 258 (328)
T 3e70_C 197 AAVAYDAI-----------QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-N------AIV 258 (328)
T ss_dssp HHHHHHHH-----------HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T------HHH
T ss_pred HHHHHHHH-----------HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-H------HHH
Confidence 11111111 0011 111110 11100 0001112233348999998888888885554 3 445
Q ss_pred HHHHHHHHhcCcEEEEEeCChh---------HHHhhhceEEEeeCCeEE
Q 022663 191 DFFKDECEQRGATIVYATHIFD---------GLETWATHLAYIQDGELR 230 (294)
Q Consensus 191 ~~l~~~~~~~g~tviivsHd~~---------~~~~~~d~v~~l~~G~i~ 230 (294)
+.++.+.+..+.|+|++||.-+ .+....-.|.++..|+.+
T Consensus 259 ~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 5556665567899999999542 334455678888888754
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.34 E-value=5.4e-14 Score=126.31 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=68.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccccCCcccccccccccccccC-cccccccc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG-EIPLQGDF 116 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 116 (294)
.++.+++|+|++|||||||.+.|++.+.+.+ ...+.+...+.+ +........+.+.. ..++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f------------~~~~~~~~~l~~~~~~~~l~~-- 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF------------YLTHEDQLKLNEQFKNNKLLQ-- 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG------------BCCHHHHHHHHHHTTTCGGGS--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc------------cCChHHHHHHhccccccchhh--
Confidence 5688999999999999999999999765421 001111011000 00000000000000 000000
Q ss_pred cHHHHhhcC-CCCcHHHHHHHHHHcCCC----------cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH
Q 022663 117 SAEHMIFGV-EGSDPVRRERLIELLDID----------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184 (294)
Q Consensus 117 ~~~~~~~~~-~~~~~~~~~~~l~~l~l~----------~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~ 184 (294)
..+. ...+.....+.++.+... ...+...+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 95 -----~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 95 -----GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp -----SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred -----hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 0001 112233444455554322 12345689999999999984333399999999999999985
No 140
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.33 E-value=1.2e-12 Score=124.63 Aligned_cols=49 Identities=27% Similarity=0.214 Sum_probs=43.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
-+++||++.+|++++|+|+||||||||+++|+|++.+. +|.+.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcc
Confidence 46899999999999999999999999999999988876 78888766554
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.33 E-value=2.3e-12 Score=116.46 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=77.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccc
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ 113 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (294)
.++++..+|++++|+|||||||||+++.|++.+.+. ++.+.+.+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r------------------------------ 144 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFR------------------------------ 144 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTC------------------------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEcccccc------------------------------
Confidence 456777899999999999999999999999987665 4444433322110
Q ss_pred ccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHH---HHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663 114 GDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRV---QICMGLLHPFKVLLLDEITVDLDVVARMDLL 190 (294)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv---~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~ 190 (294)
. .. .+....+.+.+++.. +..+|+|+.+++ +|++++..+|+++|+|||.. ......++
T Consensus 145 -~-~a-----------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~ 205 (306)
T 1vma_A 145 -A-AA-----------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM 205 (306)
T ss_dssp -H-HH-----------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred -H-HH-----------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence 0 00 011223344445432 346789999999 99999999999999999974 33445555
Q ss_pred HHHHHHH
Q 022663 191 DFFKDEC 197 (294)
Q Consensus 191 ~~l~~~~ 197 (294)
+.|..+.
T Consensus 206 ~eL~~l~ 212 (306)
T 1vma_A 206 EELRKVH 212 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.32 E-value=4.4e-15 Score=125.99 Aligned_cols=57 Identities=7% Similarity=-0.048 Sum_probs=43.4
Q ss_pred HHH-HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663 161 ICM-GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226 (294)
Q Consensus 161 lAr-aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~ 226 (294)
.++ +++.+|++++|||||+++|..+...+.+.|....++ +.+.|.. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc----CCceEEEECCC
Confidence 456 788889999999999999999999999888776543 2345621 56899887764
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.32 E-value=2.6e-15 Score=137.37 Aligned_cols=172 Identities=19% Similarity=0.139 Sum_probs=100.0
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhCCc----ccCCCceEEecCCc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPG-------SRCLLVGANGSGKTTLLKILAGKH----MVGGRDVVQVLNRS 80 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~i~G~~----~~~~~g~i~~~~~~ 80 (294)
.+++.++++..|++ ..+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+. +|.+...+.+
T Consensus 17 ~~lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~-sg~~~~~~~~ 92 (334)
T 1in4_A 17 QFLRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT-SGPVLVKQGD 92 (334)
T ss_dssp CTTSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE-ETTTCCSHHH
T ss_pred HHcCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE-echHhcCHHH
Confidence 46788889888865 46899999999877 899999999999999999999965 221 2221111111
Q ss_pred ccccccccccCCcccccccccccccccCcccccccccHHHHhhc-C--CC--------CcHHHHHHHHHHcCCC-ccccc
Q 022663 81 SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-V--EG--------SDPVRRERLIELLDID-LQWRM 148 (294)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~--------~~~~~~~~~l~~l~l~-~~~~~ 148 (294)
... .........+.++.+...... +..+.++. . .. .....+...+..+.+. ...++
T Consensus 93 l~~-----------~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~ 160 (334)
T 1in4_A 93 MAA-----------ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS 160 (334)
T ss_dssp HHH-----------HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCG
T ss_pred HHH-----------HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc
Confidence 000 000000111222222111111 22222211 0 00 0011112223333332 45677
Q ss_pred ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH 220 (294)
Q Consensus 149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~ 220 (294)
..||+|++||+.++ .+||+....++.++|.+.++..+ ++|+.+.+..++++
T Consensus 161 ~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 161 GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 89999999998655 78889899999999988876554 37888888777775
No 144
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.31 E-value=8.4e-15 Score=126.81 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=22.9
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-CCcc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-GKHM 67 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~-G~~~ 67 (294)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999 9763
No 145
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.31 E-value=2.4e-11 Score=111.79 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=49.4
Q ss_pred HHHHHHHHccC--CCEEEeeCCCCCC----------CH---HHHHHHHHHHHH---HHHhcCcEEEEEeCChh-------
Q 022663 158 RVQICMGLLHP--FKVLLLDEITVDL----------DV---VARMDLLDFFKD---ECEQRGATIVYATHIFD------- 212 (294)
Q Consensus 158 Rv~lAraL~~~--p~iLlLDEPt~gL----------D~---~~~~~l~~~l~~---~~~~~g~tviivsHd~~------- 212 (294)
-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+.+ ++++.++|||+++|...
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45577777654 9999999999998 32 111233344444 34677999999999653
Q ss_pred ---------HHHhhhceEEEeeCCeEE
Q 022663 213 ---------GLETWATHLAYIQDGELR 230 (294)
Q Consensus 213 ---------~~~~~~d~v~~l~~G~i~ 230 (294)
.+..+||.++.++.+++.
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCcccCCchHhhhccceEEEEEEeeee
Confidence 256789999988876543
No 146
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.30 E-value=2.9e-14 Score=121.58 Aligned_cols=146 Identities=18% Similarity=0.038 Sum_probs=81.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccccCCcccccccccccccccCcccccccc
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF 116 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (294)
.++|++++|+||||||||||+++|+|++.+.+ .|.+..++...... .....+.........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~---------------~~~~~~~~~~~~~~~-- 81 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR---------------LLEPRGLLPRKGAPE-- 81 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH---------------HHGGGTCGGGTTSGG--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH---------------HHHHhcccccCCCCc--
Confidence 57899999999999999999999999887532 44554444321100 000000000000000
Q ss_pred cHHHHhhcCCCCcHHHHHHHHHHcC----C--CcccccccCCHHHHHHHHHH-HHHccCCCEEEeeCCCCCCCHHHHHHH
Q 022663 117 SAEHMIFGVEGSDPVRRERLIELLD----I--DLQWRMHKVSDGQRRRVQIC-MGLLHPFKVLLLDEITVDLDVVARMDL 189 (294)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~l~----l--~~~~~~~~LSgGqkqRv~lA-raL~~~p~iLlLDEPt~gLD~~~~~~l 189 (294)
..+.......+..+. + ........+|+||+||+++| ++++.++.++++|||..
T Consensus 82 ----------~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~---------- 141 (208)
T 3c8u_A 82 ----------TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW---------- 141 (208)
T ss_dssp ----------GBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG----------
T ss_pred ----------hhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh----------
Confidence 001111222222221 1 11223345799999999998 88888888888888731
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEEEeeCCe
Q 022663 190 LDFFKDECEQRGATIVYATHIFDG-LETWATHLAYIQDGE 228 (294)
Q Consensus 190 ~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~~l~~G~ 228 (294)
..+.. .--.+|+++++.+. +.+.+.|. +..|.
T Consensus 142 -~~l~~----~~d~~i~vd~~~~~~~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 142 -RDLTA----IWDVSIRLEVPMADLEARLVQRW--LDHGL 174 (208)
T ss_dssp -GGGGG----TCSEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred -HHHHH----hcCEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence 11111 12368889999886 56666662 34454
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=5.3e-12 Score=115.44 Aligned_cols=148 Identities=15% Similarity=0.208 Sum_probs=72.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHH
Q 022663 43 SRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM 121 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (294)
..+.|.||||+|||||+++|+| +..++ .|.+.+++........ . ...+++..+.... .+...+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~-~g~i~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~-~~~~~~- 100 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPG-VYRLKIDVRQFVTASN-----R--------KLELNVVSSPYHL-EITPSD- 100 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTT-CCC-------------------------------CCEECSSEE-EECCC--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCC-CCeEEecceeeccccc-----c--------cceeeeecccceE-EecHhh-
Confidence 3499999999999999999999 55544 6666665543210000 0 0001111110000 000000
Q ss_pred hhcCCCCcHHHHHHHHHHcCC--CcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663 122 IFGVEGSDPVRRERLIELLDI--DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199 (294)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~ 199 (294)
.+ ........+.++.+.. ..+... .||| +..+|+++|+|||++ ||+..+..+++.|.+..
T Consensus 101 -~~--~~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-- 162 (354)
T 1sxj_E 101 -MG--NNDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-- 162 (354)
T ss_dssp ------CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--
T ss_pred -cC--CcchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--
Confidence 00 0011122333333221 111111 4566 788999999999999 99999999999988753
Q ss_pred cCcEEEEEeCChhHH-HhhhceEEEe
Q 022663 200 RGATIVYATHIFDGL-ETWATHLAYI 224 (294)
Q Consensus 200 ~g~tviivsHd~~~~-~~~~d~v~~l 224 (294)
.+.++|++||+++.+ ..+.+|+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEE
Confidence 368999999997643 3344555444
No 148
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=2.6e-15 Score=139.96 Aligned_cols=66 Identities=8% Similarity=0.008 Sum_probs=56.2
Q ss_pred CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE-EeeCC-eEEecccH
Q 022663 168 PF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA-YIQDG-ELRRAEKL 235 (294)
Q Consensus 168 ~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~-~l~~G-~i~~~g~~ 235 (294)
+| +++++|||+.++|+......++.+.......|.|++ +|+...+..+|+++. +|++| +++..++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 89 999999999999999999999988876123466754 999999999999999 99999 88766654
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.27 E-value=1.1e-11 Score=117.84 Aligned_cols=178 Identities=12% Similarity=0.104 Sum_probs=107.2
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+.|+++..-+++|+++.|.|++|+|||||+..|++...+. +.....+........ + ..+......
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~--------l------~~r~~~~~~ 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQ--------L------VMRMLCAEG 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHH--------H------HHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH--------H------HHHHHHHHc
Confidence 4688888889999999999999999999999998855442 112222222111000 0 000000000
Q ss_pred cccccccccHHHHhhc-CCCCcHHHHHHHHHHcCCC-c-ccccccCCHHHHHHHHHHHHHc--cCCCEEEeeCCCCCCCH
Q 022663 109 EIPLQGDFSAEHMIFG-VEGSDPVRRERLIELLDID-L-QWRMHKVSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDV 183 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~-~-~~~~~~LSgGqkqRv~lAraL~--~~p~iLlLDEPt~gLD~ 183 (294)
......+..+ +...+..+...+++.+... . -.....+|.++.+ +.++.++ .+|+++++|+++...+.
T Consensus 257 ------~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 257 ------NINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp ------TCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred ------CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 0000111111 0000112233333333321 1 1224579999887 4566665 68999999999987743
Q ss_pred --------HHHHHHHHHHHHHHHhcCcEEEEEeC---------C--hh--------HHHhhhceEEEeeCCeE
Q 022663 184 --------VARMDLLDFFKDECEQRGATIVYATH---------I--FD--------GLETWATHLAYIQDGEL 229 (294)
Q Consensus 184 --------~~~~~l~~~l~~~~~~~g~tviivsH---------d--~~--------~~~~~~d~v~~l~~G~i 229 (294)
....++...|+.++++.+++||+++| | +. .+...||.|++|+.++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 33467778888888888999999999 3 32 57788999999987764
No 150
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.26 E-value=3.8e-12 Score=117.16 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=64.8
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cCCCceEEec-CCcccccccccccCCcccccccccccccccC
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VGGRDVVQVL-NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~~~g~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
-++++++. .+|++++|+||||||||||+|+|+|... +. .|.+... |..... .....+.++++.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~-~G~I~~~~G~g~~t----t~~~~i~~v~q~--------- 269 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL-TNDVSNVSGLGQHT----TTAARLYHFPHG--------- 269 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC-CC-----------------CCCEEEECTTS---------
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc-cCCccccCCCCccc----eEEEEEEEECCC---------
Confidence 46777775 4899999999999999999999999887 75 6776654 432110 000111111110
Q ss_pred cccccccccHHHHhhcCCCCcHH----HHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPV----RRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL 165 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL 165 (294)
..++...+..+ +.......+ .+.++++.+++. .++.+.+|| ||+||++||+++
T Consensus 270 -~~l~dtpgv~e--~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 270 -GDVIDSPGVRE--FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp -CEEEECHHHHT--CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred -CEecCcccHHH--hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 11122222222 111122221 123455666664 477888999 999999999874
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.26 E-value=7.8e-12 Score=112.51 Aligned_cols=139 Identities=15% Similarity=0.214 Sum_probs=82.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc-eEEecCCcccccccccccCCcccccccccccccccCcccccccccH
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA 118 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (294)
.+|++++|+|||||||||+++.|++.+.+. .| .+.+.+.+.+. ...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r--------------------------------~~a 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYR--------------------------------IAA 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSS--------------------------------TTH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCccc--------------------------------chH
Confidence 479999999999999999999999977653 23 23222211100 000
Q ss_pred HHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Q 022663 119 EHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198 (294)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~ 198 (294)
. +....+.+.+++.... ..+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++.. +..
T Consensus 150 ~-----------eqL~~~~~~~gl~~~~---~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~ 209 (296)
T 2px0_A 150 V-----------EQLKTYAELLQAPLEV---CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIP 209 (296)
T ss_dssp H-----------HHHHHHHTTTTCCCCB---CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSC
T ss_pred H-----------HHHHHHHHhcCCCeEe---cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHh
Confidence 0 0011111222222100 1122 333556664 4999999999 99999877655554433 322
Q ss_pred ---hcCcEEEE-EeCChhHHHhhhceEEEeeCCeEEe
Q 022663 199 ---QRGATIVY-ATHIFDGLETWATHLAYIQDGELRR 231 (294)
Q Consensus 199 ---~~g~tvii-vsHd~~~~~~~~d~v~~l~~G~i~~ 231 (294)
..+.++++ ++|+.+.+.++++++..+..+.++.
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22333444 4999999999999887777777765
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=9.8e-14 Score=125.57 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=51.7
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCcc--cCCC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGI-------------------SPGSRCLLVGANGSGKTTLLKILAGKHM--VGGR 71 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i-------------------~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~~~ 71 (294)
+|++++|++.|. ++++++++.+ .+|+++||+||||||||||+++|+|++. |+ +
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-~ 110 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE-H 110 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-C
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-C
Confidence 689999999993 5899999998 8999999999999999999999999776 65 6
Q ss_pred ceEEe
Q 022663 72 DVVQV 76 (294)
Q Consensus 72 g~i~~ 76 (294)
|.+.+
T Consensus 111 G~i~v 115 (308)
T 1sq5_A 111 RRVEL 115 (308)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 77766
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.18 E-value=9.3e-12 Score=118.65 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=44.3
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
.+|+++||+|++ ++++|+|||||||||||++|+|++.|+ +|.+.++|.+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~ 66 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD-LTLLNFRNTT 66 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC-TTTCCCCCTT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEE
Confidence 479999999999 999999999999999999999988876 7888777654
No 154
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.17 E-value=5.4e-12 Score=113.86 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=67.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe---cCCcccccccccccCCcccccccccccccccCccccc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV---LNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ 113 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (294)
+++.+|++++|+||||||||||+|+|+ +..+. .|.+.+ .|.+............+.++.+.. ++ ....++
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~-~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p----g~-~~~~l~ 232 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELR-TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP----GF-SKVEAT 232 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC-CSCC---------CCCCEEEEEETTTEEEESSC----CC-SSCCGG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCc-ccccccccCCCCCceeeEEEEEcCCCcEEEECc----Cc-CcCccc
Confidence 356689999999999999999999999 87776 788877 665432211100001112221110 00 000111
Q ss_pred ccccHHHH--hhc--------CC-----CCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663 114 GDFSAEHM--IFG--------VE-----GSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICM 163 (294)
Q Consensus 114 ~~~~~~~~--~~~--------~~-----~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr 163 (294)
..++.+++ .+. .. .....++.++++.+++. .++++..|||.++|++.|||
T Consensus 233 ~~lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 233 MFVKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GTSCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred ccCCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22323322 111 11 11234678889999985 36788999999999999986
No 155
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.17 E-value=5.8e-14 Score=125.05 Aligned_cols=146 Identities=15% Similarity=0.091 Sum_probs=81.1
Q ss_pred CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
..+++++++++++| ++|+||||||||||+|+|+|... .+.+.+.+.+............+.+..+.... ..+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~---~~p 104 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELLNMYVGESERAVRQVFQRAKN---SAP 104 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHH---TCS
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh---cCC
Confidence 35889999999999 99999999999999999999654 35677766543211000000011111110000 000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC---------
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV--------- 179 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~--------- 179 (294)
...+. +++............ ....-..++.+.+|||||+||+.|++|+..+|++| |||+.
T Consensus 105 ~i~~~-----Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i 173 (274)
T 2x8a_A 105 CVIFF-----DEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTL 173 (274)
T ss_dssp EEEEE-----ETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEE
T ss_pred CeEee-----ehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEE
Confidence 00000 111000000000000 00000124567789999999999999999999985 99864
Q ss_pred ---CCCHHHHHHHHHHH
Q 022663 180 ---DLDVVARMDLLDFF 193 (294)
Q Consensus 180 ---gLD~~~~~~l~~~l 193 (294)
-.|...+.++++.+
T Consensus 174 ~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 174 FVGLPPPADRLAILKTI 190 (274)
T ss_dssp ECCSCCHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHH
Confidence 23666666666544
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.10 E-value=6.5e-12 Score=120.56 Aligned_cols=175 Identities=16% Similarity=0.097 Sum_probs=95.7
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC-CcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccc
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL 112 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (294)
.+++++.++..+.|.|++||||||++++|.. ++.....+.+.+...+... . ....+.. +..... ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~------el~~~~~-lPhl~~-----~V 225 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-L------ELSVYEG-IPHLLT-----EV 225 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-S------GGGGGTT-CTTBSS-----SC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-h------hhhhhcc-CCcccc-----ee
Confidence 5788999999999999999999999999875 2211113333333222110 0 0000000 000000 00
Q ss_pred ccccc-HHHHhhcCCCCcHHHHHHHHHHcCCC-c---c-cccccCCHHHHHHH----------HHHHHHccCCC-EEEee
Q 022663 113 QGDFS-AEHMIFGVEGSDPVRRERLIELLDID-L---Q-WRMHKVSDGQRRRV----------QICMGLLHPFK-VLLLD 175 (294)
Q Consensus 113 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~-~---~-~~~~~LSgGqkqRv----------~lAraL~~~p~-iLlLD 175 (294)
..+.. ....+... ....++..+++...++. . + +....+|+||+|+. .+|+++...|. ++++|
T Consensus 226 vtd~~~a~~~L~~~-~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 226 VTDMKDAANALRWC-VNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp BCSHHHHHHHHHHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred ecCHHHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 01100 00000000 00111223455666653 1 1 12346889988752 35667778898 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChh-------HHHhhhceEEE
Q 022663 176 EITVDLDVVARMDLLDFFKDEC---EQRGATIVYATHIFD-------GLETWATHLAY 223 (294)
Q Consensus 176 EPt~gLD~~~~~~l~~~l~~~~---~~~g~tviivsHd~~-------~~~~~~d~v~~ 223 (294)
|+++-+|.. ...+.+.|.+++ +..|.++|++||++. ...++.+||.+
T Consensus 305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 999988743 344555555443 445889999999987 45667777766
No 157
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.00 E-value=2.3e-11 Score=106.75 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=35.2
Q ss_pred cccEEEcce-EEEcCCCCCCCceeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhCC
Q 022663 11 LNSIKVCGM-QFSYEGNDKPPLFYDFNLGISP---GSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 11 ~~~l~~~~l-s~~y~~~~~~~iL~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+++|+ +++|++ ..++|+++||+|.+ |++++|+|++||||||+.++|++.
T Consensus 15 ~~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 15 SALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999 999932 25799999999999 999999999999999999999873
No 158
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.95 E-value=1.5e-08 Score=93.11 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=31.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL 77 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~ 77 (294)
-+++|+++.|.||+|||||||+..+++...+.+...++++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4889999999999999999999999986555423333443
No 159
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=3e-10 Score=102.27 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=30.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe---cCCcc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV---LNRSS 81 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~---~~~~~ 81 (294)
|++.+|++++|+||||||||||+|+|+|+..|+ .|.+.+ .|...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~-~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR-VSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------------C
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc-ccceecccCCCCCc
Confidence 567789999999999999999999999998886 788777 56543
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.88 E-value=1.1e-09 Score=91.57 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=33.3
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663 157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195 (294)
Q Consensus 157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~ 195 (294)
+.+.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999988865
No 161
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.87 E-value=1.8e-09 Score=102.92 Aligned_cols=117 Identities=22% Similarity=0.257 Sum_probs=76.5
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE 109 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (294)
..++++++.+++| +.|+||+|+|||||+++|++.... ..+.+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---~f~~is-------------------------------- 81 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---PFFHIS-------------------------------- 81 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---CEEEEE--------------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---CeeeCC--------------------------------
Confidence 4667788888888 889999999999999999983210 000000
Q ss_pred ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCC----------CC
Q 022663 110 IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI----------TV 179 (294)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEP----------t~ 179 (294)
..++.. ...+ .+++++|..+++|....|.+|++||+ +.
T Consensus 82 --------~~~~~~----------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 82 --------GSDFVE----------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp --------GGGTTT----------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred --------HHHHHH----------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 000000 0000 26778889999999999999999999 34
Q ss_pred CCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHH
Q 022663 180 DLDVVARMDLLDFFKDEC---EQRGATIVYATHIFDGLE 215 (294)
Q Consensus 180 gLD~~~~~~l~~~l~~~~---~~~g~tviivsHd~~~~~ 215 (294)
|.|......+.+++..+- ...+..||.+||+++.+.
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 677766666666665542 234678999999986543
No 162
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.86 E-value=1.3e-09 Score=92.06 Aligned_cols=71 Identities=7% Similarity=0.055 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH--HhhhceEEEeeC
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL--ETWATHLAYIQD 226 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~--~~~~d~v~~l~~ 226 (294)
.+.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+. ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678899999999888888654333 3456666666665554321 256888889988665 677999988863
No 163
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.82 E-value=2.9e-09 Score=107.48 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=58.3
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEE-EeCChhHHHhhhceE
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV-DLDVVARMDLLDFFKDECEQRGATIVY-ATHIFDGLETWATHL 221 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~-gLD~~~~~~l~~~l~~~~~~~g~tvii-vsHd~~~~~~~~d~v 221 (294)
..+.-+|+|+.+|..++++++.++++||+|||.. +||......+++.+.... ....+|++ +||+.+.+.++++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 3466789999999999999999999999999996 999877666665554432 22456666 499998888887753
No 164
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.82 E-value=1.3e-09 Score=91.57 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5788899999999999999999999999974
No 165
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.81 E-value=6.3e-10 Score=100.37 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=26.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV 76 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~ 76 (294)
+++.+|++++|+||||||||||+|+|+|...+. .|.+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR-TNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc-ccceee
Confidence 678899999999999999999999999988776 676665
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=1e-09 Score=107.91 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=92.6
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL 96 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 96 (294)
++++.-|+. ..+++++++.+.+|+.++|+||||+|||||+++|+|+..+...+.+.+.+....... ..+.+.
T Consensus 38 ~~l~~i~G~---~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~ 109 (604)
T 3k1j_A 38 KLIDQVIGQ---EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTV 109 (604)
T ss_dssp SHHHHCCSC---HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEE
T ss_pred cccceEECc---hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEE
Confidence 334444543 468899999999999999999999999999999999887654466655444321100 001111
Q ss_pred cccccc-----------------cccccC-cccccccccHHHHhhcCCCCc--HHHHHHHHHHcCCC--cccccccCCHH
Q 022663 97 GGSWSK-----------------TVGSAG-EIPLQGDFSAEHMIFGVEGSD--PVRRERLIELLDID--LQWRMHKVSDG 154 (294)
Q Consensus 97 ~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~--~~~~~~~LSgG 154 (294)
++.... ...... ......++...+ ....... ........+.++.. .....+.+|+|
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~--~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDN--CGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTP 187 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECC--TTCSSCCEEECTTCCHHHHHCEECCCCC----CCCC
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeecc--ccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccc
Confidence 000000 000000 000000000000 0000000 00000112223321 11223569999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195 (294)
Q Consensus 155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~ 195 (294)
++|++..++....++.+|+|||... |++..+..+++.|.+
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999999987 899988888888764
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.77 E-value=8.8e-11 Score=101.57 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=41.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~ 81 (294)
..|+++|+...|+ . +|+|.+ ++++|+|||||||||||++|+|++.|+ +|.+.++|.+.
T Consensus 8 ~~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~-~G~i~~~g~~~ 65 (227)
T 1qhl_A 8 RSLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD-LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC-TTTC-------
T ss_pred eEEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC-CCeEEECCEEc
Confidence 3578888765542 1 566666 899999999999999999999988876 77777776543
No 168
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.76 E-value=2.9e-08 Score=90.09 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHHHHHHHHc---cCCCEEEeeCCCCCCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663 157 RRVQICMGLL---HPFKVLLLDEITVDLDV--------VA----RMDLLDFFKDECEQRGATIVYATHIFD 212 (294)
Q Consensus 157 qRv~lAraL~---~~p~iLlLDEPt~gLD~--------~~----~~~l~~~l~~~~~~~g~tviivsHd~~ 212 (294)
+.+..++.++ .+|+++++|+.++-... .. ..+++..|..++++.+.+||+++|-..
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 5566777777 67999999999876532 11 245666677777788999999998653
No 169
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.75 E-value=3.6e-08 Score=90.23 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHHHHHHHc----cCCCEEEeeCCCCCCCHH------------HHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663 157 RRVQICMGLL----HPFKVLLLDEITVDLDVV------------ARMDLLDFFKDECEQRGATIVYATHIFD 212 (294)
Q Consensus 157 qRv~lAraL~----~~p~iLlLDEPt~gLD~~------------~~~~l~~~l~~~~~~~g~tviivsHd~~ 212 (294)
+.+..++.++ .+++++++|+.++-.... ...+++..|..++++.+.+||+++|-..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 3444455555 679999999999876432 1345666677778888999999999654
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.71 E-value=7.5e-09 Score=85.50 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=31.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
+++++++.+| +++|+||||||||||+++|.+++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999 9999999999999999999986544
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=8.7e-08 Score=87.95 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=37.4
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCChhHHHhh
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ--RGATIVYATHIFDGLETW 217 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~--~g~tviivsHd~~~~~~~ 217 (294)
.+|.+|++||+... |......+..++.+.... .+.++|++||+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45889999999876 888888887777654321 378999999998655443
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.66 E-value=7e-08 Score=88.05 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=82.7
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE 109 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (294)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++...... +..+. ++.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl-------------------~fS------------ 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVA-------------------VFS------------ 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEE-------------------EEE------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEE-------------------EEe------------
Confidence 3567766679999999999999999999998887532221 11111 100
Q ss_pred ccccccccHHHHhhcCCCCcHHHHHHHHH-HcCCCcc-cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHH
Q 022663 110 IPLQGDFSAEHMIFGVEGSDPVRRERLIE-LLDIDLQ-WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187 (294)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~l~~~-~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~ 187 (294)
..++.+++ ..+++. ..++... -.-+.||.++++|+..|...+.+++++|.|+|...++
T Consensus 82 ----lEms~~ql-----------~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~----- 141 (338)
T 4a1f_A 82 ----LEMSAEQL-----------ALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE----- 141 (338)
T ss_dssp ----SSSCHHHH-----------HHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----
T ss_pred ----CCCCHHHH-----------HHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----
Confidence 01111111 112211 1122211 1124799999999999999999999999999975433
Q ss_pred HHHHHHHHHHHhc-CcEEEEEeC
Q 022663 188 DLLDFFKDECEQR-GATIVYATH 209 (294)
Q Consensus 188 ~l~~~l~~~~~~~-g~tviivsH 209 (294)
+|...++++.+++ +..+|+|-|
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEec
Confidence 5666666666666 788988864
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.66 E-value=2.7e-08 Score=91.50 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=38.0
Q ss_pred EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc-ccCCCceE
Q 022663 16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-MVGGRDVV 74 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~-~~~~~g~i 74 (294)
++++...|+......+|++++++++ .++|+|++|||||||++.|+|.. .|.+.|.+
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 4566666753222358999999998 89999999999999999999943 24444543
No 174
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=1.7e-08 Score=84.91 Aligned_cols=38 Identities=32% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 28 ~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
...+++||||++.+|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999964
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.61 E-value=6.5e-09 Score=87.06 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=32.6
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 022663 159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC 197 (294)
Q Consensus 159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~ 197 (294)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887654
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.61 E-value=4.4e-09 Score=88.58 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=36.6
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
+|+++.++. ....+.+++..++|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467776654 457788999999999999999999999999999999765
No 177
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.60 E-value=1.7e-07 Score=86.08 Aligned_cols=65 Identities=6% Similarity=0.146 Sum_probs=50.2
Q ss_pred cccccCCHHHHHHHHHHHHHccCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe--CChhH
Q 022663 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLD-EITVDLDVVARMDLLDFFKDECEQRGATIVYAT--HIFDG 213 (294)
Q Consensus 146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLD-EPt~gLD~~~~~~l~~~l~~~~~~~g~tviivs--Hd~~~ 213 (294)
..+..+|+|++|++. +.+...++-++++| +|.+++|......+++.+..... +..+|+|. ||+..
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCC
Confidence 345679999998876 55556778899999 99999999888777776665432 67888888 88753
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=2.7e-08 Score=83.50 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
++|.+|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46889999999999999999999999997744
No 179
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.56 E-value=1.4e-06 Score=80.07 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=24.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+++.|.|++|+|||||...++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999988775
No 180
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=2.5e-08 Score=83.06 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
|++++|+||||||||||+++|+|++.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999997753
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.44 E-value=7.3e-08 Score=81.03 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=24.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+-+..++.++|++++|+||||||||||+++|+|.+
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 33344677899999999999999999999999854
No 182
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.42 E-value=2.5e-07 Score=85.38 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=39.6
Q ss_pred ccccccCCHHHHHHHHHH----HHH-ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663 145 QWRMHKVSDGQRRRVQIC----MGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199 (294)
Q Consensus 145 ~~~~~~LSgGqkqRv~lA----raL-~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~ 199 (294)
..++..+|+|+++++.++ +++ ..+|++ +|+|++|......+++.|.+....
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 299 LNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 345667898888888877 665 444554 899999999999999999886644
No 183
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=5.4e-07 Score=84.78 Aligned_cols=29 Identities=38% Similarity=0.210 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKHMVG 69 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~~ 69 (294)
++.+++++|||||||||++..|++.+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999876654
No 184
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.41 E-value=9.2e-07 Score=79.87 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=80.2
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE 109 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (294)
+-|+.+.--+.+|+++.|.|++|+|||||+..++......+...+ ++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl--------------------~~s------------ 103 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVN--------------------LHS------------ 103 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEE--------------------EEE------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE--------------------EEE------------
Confidence 457777766999999999999999999999888742211110000 000
Q ss_pred ccccccccHHHHhhcCCCCcHHHHHHHHHH-cCCCccc-ccc--cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHH
Q 022663 110 IPLQGDFSAEHMIFGVEGSDPVRRERLIEL-LDIDLQW-RMH--KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA 185 (294)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~-~~~--~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~ 185 (294)
...+.++ ...+++.. .++...+ .-+ .||.++++|+..|...+.++++++.|+|...+
T Consensus 104 ----lE~s~~~-----------l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~---- 164 (315)
T 3bh0_A 104 ----LEMGKKE-----------NIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV---- 164 (315)
T ss_dssp ----SSSCHHH-----------HHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH----
T ss_pred ----CCCCHHH-----------HHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH----
Confidence 0011111 11122211 1222111 112 39999999999999999999999999986442
Q ss_pred HHHHHHHHHHHHHhcCcE--EEEEeCC
Q 022663 186 RMDLLDFFKDECEQRGAT--IVYATHI 210 (294)
Q Consensus 186 ~~~l~~~l~~~~~~~g~t--viivsHd 210 (294)
.++...++++.++.+.. +|+|-|-
T Consensus 165 -~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 165 -NYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566666666666777 8888763
No 185
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.41 E-value=4.6e-08 Score=85.55 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=31.4
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh---CCcccCCCceEE
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILA---GKHMVGGRDVVQ 75 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~---G~~~~~~~g~i~ 75 (294)
++++.+ .+|++++|+|||||||||++++|+ |+..++ .|.+.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d-~g~i~ 62 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD-SGAIY 62 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE-HHHHH
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC-CCcee
Confidence 444443 789999999999999999999999 987765 55554
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.39 E-value=1.2e-07 Score=78.52 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
.+|++++|+||||||||||+++|++...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999653
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.37 E-value=8.9e-08 Score=87.49 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998543
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.35 E-value=5.3e-09 Score=100.29 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=43.3
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
+++++...|.. ..+++++++.+++| +.|+||||+|||||+++|+|... .+.+.+.+.+
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~ 99 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSD 99 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGG
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhH
Confidence 34444444533 35788999999999 99999999999999999999542 5566666543
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=1.8e-07 Score=88.39 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=35.4
Q ss_pred cCCCEEEeeCCCCCCCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663 167 HPFKVLLLDEITVDLDV-VARMDLLDFFKDECEQRGATIVYATHIF 211 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~-~~~~~l~~~l~~~~~~~g~tviivsHd~ 211 (294)
.+|++|++||+..-.+. ..+..++..+..+. +.|..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCC
Confidence 48999999999877664 67778888887765 4588999999983
No 190
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.33 E-value=1.6e-07 Score=88.49 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=37.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG 69 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~ 69 (294)
.|+++|+ +.|++ . . .+++.+|++++|+||||||||||+++|+++..+.
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 4788888 67743 1 2 3557789999999999999999999999866543
No 191
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.33 E-value=7.7e-08 Score=89.12 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=34.1
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+|+++++.+++|++++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999999999999999984
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.33 E-value=1.2e-07 Score=81.70 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=32.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
-+.+.++|++++|.|+||||||||+++|+|. +|.+.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence 3446689999999999999999999999995 3445555543
No 193
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.32 E-value=1.7e-08 Score=88.04 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=46.1
Q ss_pred EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR 79 (294)
Q Consensus 14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~ 79 (294)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|+|... .+.+.+.+.
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~ 83 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 83 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH
Confidence 456677777754 46899999999999 99999999999999999999643 556666553
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.31 E-value=2.7e-07 Score=78.11 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=26.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
++|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999997643
No 195
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.31 E-value=1.7e-08 Score=91.52 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=37.5
Q ss_pred eEEEcCCCCCCCceeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhCCcc
Q 022663 19 MQFSYEGNDKPPLFYDFNLGISPGS------RCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 19 ls~~y~~~~~~~iL~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
+++.|++ ...|++++..+..++ ++||+||||||||||+++|++++.
T Consensus 66 l~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 66 LSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444543 457888888888887 999999999999999999999765
No 196
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.30 E-value=2.1e-08 Score=88.78 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=44.7
Q ss_pred EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663 15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR 79 (294)
Q Consensus 15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~ 79 (294)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|+|... .+.+.+.+.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHH
Confidence 34566666643 45889999999999 99999999999999999999653 556666554
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=4.7e-06 Score=73.87 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH----------HHHHHHHHHHHHHHh---cCcEEEEEeCChhHH----
Q 022663 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV----------ARMDLLDFFKDECEQ---RGATIVYATHIFDGL---- 214 (294)
Q Consensus 152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~----------~~~~l~~~l~~~~~~---~g~tviivsHd~~~~---- 214 (294)
+++++.|..+..+...+|.+|++||+.+-++.. ....++..+...... .+..||.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777778888888899999999998766532 222334333322110 235678888875422
Q ss_pred HhhhceEEEee
Q 022663 215 ETWATHLAYIQ 225 (294)
Q Consensus 215 ~~~~d~v~~l~ 225 (294)
.+-+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 22355555543
No 198
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.24 E-value=2.5e-07 Score=83.88 Aligned_cols=48 Identities=27% Similarity=0.238 Sum_probs=39.8
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
+++++|++.+|++++|+|+||+||||++..|++.+.+. ++.+.+.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D 142 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAAD 142 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 37899999999999999999999999999999987765 5555554444
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.24 E-value=2.8e-07 Score=77.55 Aligned_cols=40 Identities=25% Similarity=0.087 Sum_probs=32.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~ 78 (294)
...+|++++|+|+||||||||+++|++.+.+. ++.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~ 57 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH 57 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEec
Confidence 46789999999999999999999999977654 44444433
No 200
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.22 E-value=1.1e-06 Score=78.73 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHc--cCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHHHhcCc--EEEEEeCChhHHHhhhceEE
Q 022663 151 VSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDVVA-RMDLLDFFKDECEQRGA--TIVYATHIFDGLETWATHLA 222 (294)
Q Consensus 151 LSgGqkqRv~lAraL~--~~p~iLlLDEPt~gLD~~~-~~~l~~~l~~~~~~~g~--tviivsHd~~~~~~~~d~v~ 222 (294)
+|+|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++.+..+. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 67899998 8999877 67788888877655554 66677788777777777654
No 201
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.22 E-value=2.3e-07 Score=85.63 Aligned_cols=52 Identities=25% Similarity=0.223 Sum_probs=46.9
Q ss_pred cEEEcceEEEcCCCCCCCcee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 13 SIKVCGMQFSYEGNDKPPLFY--------------DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~--------------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
-+.++||++.|+. .+..|+ |+.+.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5889999999986 356788 899999999999999999999999999998754
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.21 E-value=5.2e-07 Score=89.55 Aligned_cols=30 Identities=43% Similarity=0.379 Sum_probs=25.3
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 36 NLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
++++++|..++|+|+||+|||||++.|++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 467789999999999999999999999964
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.19 E-value=6.9e-07 Score=90.53 Aligned_cols=30 Identities=33% Similarity=0.637 Sum_probs=27.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
|.+.+|+.++|+||||||||||+++|+|.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 468899999999999999999999999964
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.18 E-value=9.5e-07 Score=71.03 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=25.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4556666665 999999999999999999973
No 205
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.15 E-value=6.1e-06 Score=74.42 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988764
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.14 E-value=3.9e-08 Score=89.95 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG 69 (294)
Q Consensus 13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~ 69 (294)
+++.+++.+.|+. ..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.
T Consensus 30 ~ie~~~~~~~~~~---~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 30 LVESRHPRHQALS---TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp HHHCCCHHHHHHH---HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HhhcCCchhhhHH---HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4666777777753 46889999999999999999999999999999999876554
No 207
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.14 E-value=2.1e-05 Score=74.24 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=92.3
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG 108 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (294)
+-|+.+.--+++|+++.|.|++|+|||||+..++...... +...+.+........ + .........+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~--------l--~~R~~~~~~~i~~ 257 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQ--------L--TLRMMCSEARIDM 257 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHH--------H--HHHHHHHHTTCCT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHH--------H--HHHHHHHHcCCCH
Confidence 3466666568999999999999999999998887643321 222333222111000 0 0000000000000
Q ss_pred cccccccccHHHHhhcCCCCcHHHHHHHHHHcC---CCcccccccCCHHHHHHHHHHHHHc--cCCCEEEeeCCCCCCCH
Q 022663 109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD---IDLQWRMHKVSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDV 183 (294)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---l~~~~~~~~LSgGqkqRv~lAraL~--~~p~iLlLDEPt~gLD~ 183 (294)
.....+.++.. +..+....+..+. +..+ ....+|..+. .+.++.+. .+|+++++|..+.-...
T Consensus 258 ~~l~~g~l~~~---------~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 258 NRVRLGQLTDR---------DFSRLVDVASRLSEAPIYID-DTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp TTCCGGGCCHH---------HHHHHHHHHHHHHTSCEEEE-CCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred HHHhCCCCCHH---------HHHHHHHHHHHHhcCCEEEE-CCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 00000001110 1112222222221 1111 1235666654 34455554 58999999998765432
Q ss_pred ----------HHHHHHHHHHHHHHHhcCcEEEEEeCChh-------------------HHHhhhceEEEeeC
Q 022663 184 ----------VARMDLLDFFKDECEQRGATIVYATHIFD-------------------GLETWATHLAYIQD 226 (294)
Q Consensus 184 ----------~~~~~l~~~l~~~~~~~g~tviivsHd~~-------------------~~~~~~d~v~~l~~ 226 (294)
.....+...|+.++++.+++||+++|--. .++..||.|++|..
T Consensus 326 ~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 12246777888888889999999998211 24667888888864
No 208
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.14 E-value=5.5e-07 Score=87.33 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=34.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-ecCC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-VLNR 79 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-~~~~ 79 (294)
.+++|++++|+|+||||||||+++|+|.+.+.+++.+. +++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 57899999999999999999999999988776333554 5543
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.13 E-value=8.2e-07 Score=72.57 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999974
No 210
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.11 E-value=1.1e-06 Score=74.02 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=25.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 36 NLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
|+...+|++++|+||||||||||++.|++..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445689999999999999999999999854
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.10 E-value=1.1e-06 Score=71.57 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999853
No 212
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.09 E-value=3.9e-05 Score=70.66 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=24.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
-+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877754
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.09 E-value=8e-06 Score=76.67 Aligned_cols=57 Identities=23% Similarity=0.079 Sum_probs=43.7
Q ss_pred EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663 16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~ 80 (294)
.+++++.|++ .. ++++|+ +|++++++|+|||||||++..|++.+.+. ++.+.+.+.+
T Consensus 79 ~~~L~~~~~~---~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D 135 (425)
T 2ffh_A 79 YEALKEALGG---EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHTTS---SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECC
T ss_pred HHHHHHHhCC---Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeecc
Confidence 4567777864 22 678888 89999999999999999999999987765 5555554444
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.03 E-value=1.9e-06 Score=72.50 Aligned_cols=33 Identities=30% Similarity=0.132 Sum_probs=28.4
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
++--++++|.+++|+|++|||||||+++|++.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344467889999999999999999999999964
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.01 E-value=3.6e-06 Score=75.26 Aligned_cols=29 Identities=38% Similarity=0.693 Sum_probs=26.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.+.++..+.|.||+|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45688999999999999999999999984
No 216
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.96 E-value=6.4e-05 Score=64.49 Aligned_cols=46 Identities=17% Similarity=-0.102 Sum_probs=30.8
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeC-Ch
Q 022663 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATH-IF 211 (294)
Q Consensus 166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~-~g~tviivsH-d~ 211 (294)
..+|+++|+..+.+.++......+..++..+... ...++|+++| |.
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 3578999999998888886665555544332211 1248888898 44
No 217
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.93 E-value=5e-06 Score=70.20 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=25.5
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILA 63 (294)
Q Consensus 33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~ 63 (294)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4566677665 99999999999999999986
No 218
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=3.6e-06 Score=69.06 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
.+|++++|+|++||||||++++|++.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999986544
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.91 E-value=2.9e-05 Score=69.48 Aligned_cols=56 Identities=21% Similarity=0.063 Sum_probs=41.8
Q ss_pred EcceEEEcCCCCCCCceee-eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663 16 VCGMQFSYEGNDKPPLFYD-FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78 (294)
Q Consensus 16 ~~~ls~~y~~~~~~~iL~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~ 78 (294)
.+++++.|++ .. ++ ++|+.+ |.+++++|+||+||||++..|++.+.+. ++.+.+.+
T Consensus 77 ~~~l~~~~~~---~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~ 133 (297)
T 1j8m_F 77 YDELSNLFGG---DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVG 133 (297)
T ss_dssp HHHHHHHTTC---SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHhcc---cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 4566677764 11 56 888876 9999999999999999999999977654 44444433
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.85 E-value=4.9e-05 Score=64.37 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998743
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.84 E-value=7.4e-06 Score=70.50 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=26.9
Q ss_pred ceeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 31 LFYDFNLGIS---PGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 31 iL~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
-|.++||++. +|.+++|.|++||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4778888877 9999999999999999999999985543
No 222
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.83 E-value=2.5e-05 Score=70.17 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=30.4
Q ss_pred cCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663 167 HPFKVLLLDEITVD-LDVVARMDLLDFFKDECEQRGATIVYATHI 210 (294)
Q Consensus 167 ~~p~iLlLDEPt~g-LD~~~~~~l~~~l~~~~~~~g~tviivsHd 210 (294)
.++++|++||+-.- -+...+..++..+..... .+..+|++++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 46999999998652 334677788888877654 46667776653
No 223
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.81 E-value=5.5e-07 Score=87.34 Aligned_cols=48 Identities=21% Similarity=0.127 Sum_probs=37.9
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
+++.+.|.. ..++.++++++ +|++++|+||||+|||||+++|++...+
T Consensus 87 ~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 87 EKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 444555532 34678888888 8999999999999999999999986543
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=4.1e-05 Score=63.77 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998743
No 225
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.80 E-value=8.3e-06 Score=69.21 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+.+++|+||+||||||+.++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998743
No 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.79 E-value=1.1e-05 Score=66.68 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=25.9
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
++|++..+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999999999986
No 227
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.78 E-value=5.1e-06 Score=79.96 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=30.5
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++++|++.+| +.+|+|+||||||||+.+|.+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999 999999999999999999954
No 228
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.76 E-value=9.1e-06 Score=74.37 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~ 78 (294)
+++.+++|+|++|||||||++.|+|...+. ++.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEe
Confidence 357899999999999999999999866554 44444433
No 229
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.75 E-value=2.4e-05 Score=72.02 Aligned_cols=43 Identities=16% Similarity=0.433 Sum_probs=34.0
Q ss_pred EEEcceEEE-cCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663 14 IKVCGMQFS-YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63 (294)
Q Consensus 14 l~~~~ls~~-y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~ 63 (294)
+.+..|+.. |. .+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nFr------~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK------SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET------TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc------cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 455666654 32 357888888886 99999999999999999985
No 230
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.72 E-value=0.00045 Score=74.50 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=25.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+++|+++.|.||+|+|||||+..++...
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 8999999999999999999999887643
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.72 E-value=1.5e-05 Score=66.91 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
...+|.+++|+||+|||||||.+.|+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999864
No 232
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.70 E-value=1.2e-05 Score=67.09 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 233
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.69 E-value=3.6e-06 Score=77.40 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=36.1
Q ss_pred ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
..+.+.+++..|++ +.++++++|+| +|+|++|+|||||++.|.|..
T Consensus 16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 35888999998865 56889999987 999999999999999998853
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.68 E-value=0.00026 Score=63.72 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--c--cCCCEEEeeCCCCCCC-----H----------HHHHHHHHHH---HHHHHhcCcEEEEEeCC
Q 022663 153 DGQRRRVQICMGL--L--HPFKVLLLDEITVDLD-----V----------VARMDLLDFF---KDECEQRGATIVYATHI 210 (294)
Q Consensus 153 gGqkqRv~lAraL--~--~~p~iLlLDEPt~gLD-----~----------~~~~~l~~~l---~~~~~~~g~tviivsHd 210 (294)
-++++.+.++.++ + .+|+++++|=-++-.- - ...+.+-+.| ..++++.+.+||++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3555556666666 3 3699999998766531 0 1222333333 34567889999999998
Q ss_pred hh
Q 022663 211 FD 212 (294)
Q Consensus 211 ~~ 212 (294)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 235
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.66 E-value=5.9e-05 Score=64.68 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+.+|+.++++||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456799999999999999999887753
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=2.3e-05 Score=69.69 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=29.6
Q ss_pred CceeeeeEEEeCC-----------CEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 30 PLFYDFNLGISPG-----------SRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 30 ~iL~~vsl~i~~G-----------e~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
.+++.+...+..+ ..+.|.||+|+|||||.++|++....
T Consensus 24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 3455555555543 58999999999999999999986543
No 237
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.66 E-value=5.8e-06 Score=68.96 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 20 QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 20 s~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
++.|++ -..+++++||..+++ .++|+|++|+|||||++.+++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455665 246899999998887 578999999999999999987
No 238
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.64 E-value=2.3e-05 Score=63.78 Aligned_cols=26 Identities=38% Similarity=0.728 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+|..++|+|++|+|||||++.++|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999999985
No 239
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.61 E-value=0.00041 Score=66.29 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHHHHHHc--cCCCEEEeeCCCCCCC-------H-HHHHHHHHHHHHHHHhcCcEEEEEeCChh---------------
Q 022663 158 RVQICMGLL--HPFKVLLLDEITVDLD-------V-VARMDLLDFFKDECEQRGATIVYATHIFD--------------- 212 (294)
Q Consensus 158 Rv~lAraL~--~~p~iLlLDEPt~gLD-------~-~~~~~l~~~l~~~~~~~g~tviivsHd~~--------------- 212 (294)
-+..++.+. .+|+++++|= ...+. . ....++...|+.++++.+++||+++|--.
T Consensus 342 i~~~i~~~~~~~~~~lvVID~-l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDH-ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEEC-TTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEcc-chhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 334444443 4799999993 33332 1 22345777788888889999999998432
Q ss_pred -------HHHhhhceEEEeeC
Q 022663 213 -------GLETWATHLAYIQD 226 (294)
Q Consensus 213 -------~~~~~~d~v~~l~~ 226 (294)
.++..||-|+.|+.
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 24567899988864
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.61 E-value=8.5e-05 Score=65.18 Aligned_cols=27 Identities=44% Similarity=0.614 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.++..+.|.||.|+|||||++.++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456778999999999999999999873
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.61 E-value=0.001 Score=71.74 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|.++.|.||.|+|||||.-.++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999877764
No 242
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.60 E-value=6.8e-05 Score=68.23 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998643
No 243
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.58 E-value=0.00063 Score=74.31 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHHHc--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCcEEEEEeCChh-------
Q 022663 158 RVQICMGLL--HPFKVLLLDEITVDLD-V------------VARMDLLDFFKDE---CEQRGATIVYATHIFD------- 212 (294)
Q Consensus 158 Rv~lAraL~--~~p~iLlLDEPt~gLD-~------------~~~~~l~~~l~~~---~~~~g~tviivsHd~~------- 212 (294)
-+.+++.++ .+|+++++|.-++-.. . ...+.+.+.++.+ +++.+++||+++|-..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345555554 5799999999876552 1 1122344444444 6788999999998432
Q ss_pred ---------HHHhhhceEEEeeCC
Q 022663 213 ---------GLETWATHLAYIQDG 227 (294)
Q Consensus 213 ---------~~~~~~d~v~~l~~G 227 (294)
.++.++|.++.|.+.
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEec
Confidence 366788888887653
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.57 E-value=2.3e-05 Score=64.53 Aligned_cols=32 Identities=38% Similarity=0.343 Sum_probs=27.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
+...+|.+++|+|++||||||+.+.|+..+..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34457999999999999999999999986544
No 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.56 E-value=9.3e-06 Score=74.27 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=33.4
Q ss_pred CceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCc
Q 022663 30 PLFYDFNLGISPGSR--CLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 377889999999999 9999999999999999998743
No 246
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=4.7e-06 Score=75.62 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=39.8
Q ss_pred cceEEEcCCCCCCCceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCccc
Q 022663 17 CGMQFSYEGNDKPPLFYDFNLGISPGSR--CLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
++++..|+. ..+++.++..+..|++ +.+.||+|+||||+++++++.+..
T Consensus 22 ~~~~~~~g~---~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 22 ETLDEVYGQ---NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SSGGGCCSC---HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CcHHHhcCc---HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 444445543 4588999999999999 999999999999999999986543
No 247
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.51 E-value=5e-05 Score=61.08 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 248
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.49 E-value=3.9e-05 Score=63.37 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++++++..++. .++|+|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998887 789999999999999999986
No 249
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.00021 Score=60.99 Aligned_cols=60 Identities=18% Similarity=0.045 Sum_probs=42.7
Q ss_pred ccCCCEEEeeCCCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHHhhhceEEEee
Q 022663 166 LHPFKVLLLDEITV----DLDVVARMDLLDFFKDECEQRGATIVYATHIFD----------GLETWATHLAYIQ 225 (294)
Q Consensus 166 ~~~p~iLlLDEPt~----gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~----------~~~~~~d~v~~l~ 225 (294)
..+|+++++|--+. .-|.....++...|..++++.+.++++++|-.. .+..+||-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45789999985431 124556667788888888899999999998532 2345688888775
No 250
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.46 E-value=5.1e-05 Score=62.18 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 251
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.45 E-value=6e-05 Score=62.90 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 252
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.44 E-value=0.00054 Score=64.59 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcE--EEEEeC
Q 022663 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT--IVYATH 209 (294)
Q Consensus 151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~t--viivsH 209 (294)
|+..+.+|+.-|...+.+.+++|.|+|. +++ .++...++++.++.+.. +|+|-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8888888988888888788899988874 444 34555566665566777 877754
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.43 E-value=6.2e-05 Score=64.61 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.43 E-value=6.3e-06 Score=83.47 Aligned_cols=32 Identities=34% Similarity=0.644 Sum_probs=28.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++.+.++..++|+||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 36678899999999999999999999999854
No 255
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.39 E-value=6.7e-05 Score=63.18 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 37 LGISPGSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
+.+.+|.+++|+|++||||||+.+.|++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5578899999999999999999999998654
No 256
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=5.7e-05 Score=65.45 Aligned_cols=34 Identities=41% Similarity=0.624 Sum_probs=24.6
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++++++.++.| +.|+||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455666666666 8999999999999999999843
No 257
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.37 E-value=9.5e-05 Score=60.27 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.35 E-value=0.0001 Score=60.26 Aligned_cols=22 Identities=50% Similarity=0.765 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999995
No 259
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.34 E-value=0.00028 Score=60.37 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHHhhhceEEEee
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI----------FDGLETWATHLAYIQ 225 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd----------~~~~~~~~d~v~~l~ 225 (294)
+++++++||--. |+.. +.+.+..++. .|.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999854 6653 3444555554 48999999994 244566899999875
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.32 E-value=0.00011 Score=59.14 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+|++||||||+.+.|+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.32 E-value=0.0027 Score=59.67 Aligned_cols=27 Identities=41% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999986444
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.31 E-value=0.00014 Score=59.14 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999863
No 263
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.28 E-value=0.00013 Score=67.68 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=25.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5568889999999999999999999995
No 264
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.25 E-value=0.00012 Score=60.16 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCccc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKHMV 68 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~~~ 68 (294)
.+++|+|++|||||||++.|.+.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999886543
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.22 E-value=7.3e-05 Score=64.96 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=27.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+.+.. ....+.++.|+|++||||||+.+.|+..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444 56788999999999999999999998743
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.21 E-value=0.00019 Score=58.73 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
|.+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
No 267
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00012 Score=65.58 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+..+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998743
No 268
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.17 E-value=0.00028 Score=66.32 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++|+|+||||||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999964
No 269
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.17 E-value=0.00019 Score=61.81 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 270
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.17 E-value=0.0022 Score=55.07 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
....-+.|.||.|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44556899999999999999999873
No 271
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.17 E-value=8.6e-05 Score=63.66 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=27.4
Q ss_pred HccCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 022663 165 LLHPFKVLLLDEITVD-LDVVARMDLLDFFKDECEQRGATIVYATH 209 (294)
Q Consensus 165 L~~~p~iLlLDEPt~g-LD~~~~~~l~~~l~~~~~~~g~tviivsH 209 (294)
+..+|+++|+|||-.- .+.......++.+.... ..|..|+.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 3458999999998642 33222223344444433 45888999988
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.17 E-value=0.00021 Score=57.29 Aligned_cols=19 Identities=42% Similarity=0.693 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 022663 44 RCLLVGANGSGKTTLLKIL 62 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i 62 (294)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 273
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.15 E-value=0.0014 Score=59.83 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+...+.|.||.|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35667999999999999999999863
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.14 E-value=0.00019 Score=58.94 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.++.++.|+|++||||||+.+.|+-
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999974
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.13 E-value=0.00016 Score=59.03 Aligned_cols=24 Identities=50% Similarity=0.455 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILA 63 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~ 63 (294)
..+.++.|+|++||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999999999998
No 276
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.13 E-value=0.00024 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 277
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.12 E-value=0.00021 Score=58.12 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.00025 Score=58.64 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 279
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.09 E-value=0.00025 Score=59.00 Aligned_cols=20 Identities=45% Similarity=0.725 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 022663 45 CLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 45 ~~liG~NGsGKSTLlk~i~G 64 (294)
+.|+||||||||||++.|.-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.07 E-value=0.00027 Score=61.42 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+||+|||||||.+.|++
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999986
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.07 E-value=0.00032 Score=57.36 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+.++.|+|+.||||||+.+.|+-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999974
No 282
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.06 E-value=0.00034 Score=64.59 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=38.0
Q ss_pred cCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663 167 HPFKVLLLDEITVDLD---VVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD---~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~ 215 (294)
..|.++++||--.-++ +.....+.+++++. +++|..++++||++..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence 3588999999988884 56666777777664 678999999999987654
No 283
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.06 E-value=0.0039 Score=68.27 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
-+++|+++.|.|+.|+|||||+..++...
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999999888643
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.04 E-value=0.00038 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+|-+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998643
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00033 Score=56.68 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 286
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.01 E-value=0.00031 Score=61.49 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663 177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227 (294)
Q Consensus 177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G 227 (294)
||++++.....++++.+.+...+...+..+.+|..+.+++.++++...-.+
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 194 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRG 194 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhh
Confidence 899999999999999998887665556677888888888888887544333
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.00 E-value=0.00034 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
..+++|+|++||||||+.+.|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 288
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.99 E-value=0.00016 Score=60.45 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCcc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.96 E-value=0.00041 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.++-+++|+|+.||||||+.+.|+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999999999974
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.96 E-value=0.00042 Score=57.61 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+|-+++|.|+.||||||+.+.|+-.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999863
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.96 E-value=0.00035 Score=61.99 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
-..|.++.|.||+||||||+.+.|+.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34577999999999999999999975
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.95 E-value=0.00044 Score=57.65 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+|-+++|.|+.||||||+.+.|+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999975
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.91 E-value=0.00049 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
..+|-+++|.|+.||||||+.+.|+-
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999985
No 294
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00047 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.87 E-value=0.00049 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+++|.|+.||||||+.+.|+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 296
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.85 E-value=0.00057 Score=56.71 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999873
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00041 Score=56.42 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
++.++.|.|++||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 298
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.0006 Score=56.03 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.83 E-value=0.00064 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999987544
No 300
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.81 E-value=0.00095 Score=63.69 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+.+..-+.|.||+|+|||+|.+.|+.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 35556699999999999999999986
No 301
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.80 E-value=0.0022 Score=64.56 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+-.-+.|.||.|+|||||.|.+++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344899999999999999999984
No 302
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.80 E-value=0.00067 Score=59.69 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|||||||++.++|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 303
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.77 E-value=0.0023 Score=60.89 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=55.7
Q ss_pred ccccCCHHHHHHHHHHHHHc--c---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 022663 147 RMHKVSDGQRRRVQICMGLL--H---------------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209 (294)
Q Consensus 147 ~~~~LSgGqkqRv~lAraL~--~---------------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsH 209 (294)
..+.+||||+|-..+|.+-+ + .-.+++|||. +-+|.......++++++ .|.-+|+++-
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~----lglQliiatP 450 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER----LDMQLLIAAP 450 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH----cCCEEEEECc
Confidence 35689999999654444332 2 2258999999 99999999998888764 5899999998
Q ss_pred ChhHHHhhhceEEEee
Q 022663 210 IFDGLETWATHLAYIQ 225 (294)
Q Consensus 210 d~~~~~~~~d~v~~l~ 225 (294)
+ .+..++|.++.+-
T Consensus 451 ~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E--NISPERGTTYKLV 464 (483)
T ss_dssp S--SCCCSSSEEEECC
T ss_pred c--hhhhccCceEEEE
Confidence 8 5667788888764
No 304
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.76 E-value=0.0026 Score=52.95 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=37.7
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh----------hHHHhhhceEEEee
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF----------DGLETWATHLAYIQ 225 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~----------~~~~~~~d~v~~l~ 225 (294)
+.+++++||--- +|+.. ++.+..+... ++.||+..+|. ..+..+||.|..|.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 76543 4455555544 89999999865 45667899998775
No 305
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.74 E-value=0.00076 Score=55.50 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+..+-+++|+|+.||||||+.+.|+-
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345677999999999999999999975
No 306
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.74 E-value=0.00073 Score=55.00 Aligned_cols=22 Identities=59% Similarity=0.827 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.+++.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.73 E-value=0.00092 Score=56.36 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+|-+++|+|+.||||||+.+.|+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 308
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00067 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
=.++|+|+.|||||||++.+++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.71 E-value=0.0008 Score=53.31 Aligned_cols=22 Identities=45% Similarity=0.833 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4799999999999999999984
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.71 E-value=0.00084 Score=56.95 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.++-+++|+|+.||||||+.+.|+-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 311
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.00084 Score=56.27 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 312
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0072 Score=56.72 Aligned_cols=27 Identities=44% Similarity=0.632 Sum_probs=22.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.+-.=+.|.||.|+|||+|.++|++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 334445999999999999999999984
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.0008 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 314
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.67 E-value=0.001 Score=53.05 Aligned_cols=22 Identities=50% Similarity=0.863 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.|.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999984
No 315
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.67 E-value=0.00093 Score=54.63 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.66 E-value=0.0011 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
-++++|+|+.||||||+.+.|+-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.66 E-value=0.0011 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+-+++|+|+.||||||+.+.|+-
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 318
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.001 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 319
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.65 E-value=0.00085 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+-++.|+|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0011 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.64 E-value=0.0011 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.++|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999874
No 322
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.64 E-value=0.00092 Score=54.53 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.63 E-value=0.001 Score=55.79 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 324
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.60 E-value=0.001 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
..+++|+|+.||||||+.+.|+-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.60 E-value=0.0014 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999874
No 327
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.60 E-value=0.00093 Score=52.86 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.60 E-value=0.0011 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
...+++|.|+.||||||+.+.|+-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 329
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.58 E-value=0.001 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 330
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.58 E-value=0.0012 Score=57.04 Aligned_cols=58 Identities=10% Similarity=-0.110 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH---ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCChhH
Q 022663 155 QRRRVQICMGL---LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ--RGATIVYATHIFDG 213 (294)
Q Consensus 155 qkqRv~lAraL---~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~--~g~tviivsHd~~~ 213 (294)
++.+-.+.+++ ..+++++|+--+.+.+.... ..+++.+.+.... .+.++|+++|-.+.
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 44444555555 37888777766655655433 4455666554321 15789999986543
No 331
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.57 E-value=0.0012 Score=55.03 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
-+++|+|+.||||||+.+.|+-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.56 E-value=0.0011 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-.++|+|+.|+|||||++.+.|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.56 E-value=0.0012 Score=57.41 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
++.++.|+|++||||||+.+.|+-
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999999975
No 334
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.55 E-value=0.00081 Score=54.27 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.55 E-value=0.0012 Score=57.01 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
-+++|.|+.||||||+.+.|+-
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.54 E-value=0.0011 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.|.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999884
No 337
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.54 E-value=0.00096 Score=52.39 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.52 E-value=0.0011 Score=52.10 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 339
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.51 E-value=0.0012 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999863
No 340
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.51 E-value=0.0012 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 341
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.51 E-value=0.0012 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 342
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.50 E-value=0.0012 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|||||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998863
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0011 Score=52.43 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 344
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.49 E-value=0.0013 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999984
No 345
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.46 E-value=0.001 Score=52.66 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999863
No 346
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.46 E-value=0.0013 Score=51.94 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999986
No 347
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0093 Score=55.32 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=23.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 35 FNLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.+.-++| +.|.||.|+|||+|.+++++.
T Consensus 177 ~gi~~prG--vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 177 LGIAQPKG--VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HTCCCCCC--EEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCCCc--eEEeCCCCCCHHHHHHHHHHh
Confidence 33444555 899999999999999999984
No 348
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.017 Score=53.98 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=21.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+..=+.|.||.|+|||+|.++|++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33344999999999999999999983
No 349
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.45 E-value=0.0013 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 350
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.45 E-value=0.00078 Score=59.83 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999975
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.45 E-value=0.0016 Score=55.23 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
No 352
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=54.21 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999873
No 353
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.014 Score=54.50 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
++..=+.|.||.|+|||+|.++|++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 33344999999999999999999984
No 354
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.42 E-value=0.0013 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 355
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.42 E-value=0.0016 Score=58.05 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 356
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.42 E-value=0.0015 Score=56.80 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|..|||||||++.++|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.42 E-value=0.0015 Score=57.68 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHh
Q 022663 42 GSRCLLVGANGSGKTTLLKILA 63 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~ 63 (294)
.-+++|+|+.||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999998
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.40 E-value=0.0017 Score=55.84 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.++-+++|+||.||||||+.+.|+-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999974
No 359
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.39 E-value=0.0014 Score=57.29 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 360
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.39 E-value=0.0015 Score=53.19 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++|+|+.|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999854
No 361
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.39 E-value=0.0018 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999873
No 362
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.38 E-value=0.0015 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 363
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.38 E-value=0.0013 Score=60.55 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999874
No 364
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.37 E-value=0.0015 Score=51.78 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 365
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.37 E-value=0.0016 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999863
No 366
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.37 E-value=0.0016 Score=51.54 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999986
No 367
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.37 E-value=0.0016 Score=59.74 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
|-.++|+|.+|+|||||++.|+|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45689999999999999999997
No 368
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.36 E-value=0.0016 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.|.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 369
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.35 E-value=0.0016 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.32 E-value=0.0017 Score=51.19 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.32 E-value=0.0022 Score=51.90 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3346899999999999999999874
No 372
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.31 E-value=0.0047 Score=62.79 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
..+.|.||+|+|||+|.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999754
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.30 E-value=0.0018 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++++|+.|+|||||++.+++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 374
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0018 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|++|+|||||++.+++
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999976654
No 375
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.30 E-value=0.0022 Score=55.80 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|||||||++.++|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.29 E-value=0.0018 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 377
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.29 E-value=0.0018 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999863
No 378
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.29 E-value=0.0039 Score=52.27 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.0
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
..+...-+.+ .|..++|+||+|||||||...|+.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666665 678999999999999999998875
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.29 E-value=0.002 Score=55.59 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|||||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 380
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0019 Score=51.84 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.27 E-value=0.0017 Score=51.88 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.27 E-value=0.002 Score=54.01 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 383
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.26 E-value=0.0022 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 384
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.26 E-value=0.0023 Score=57.20 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999984
No 385
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.26 E-value=0.0019 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 386
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.26 E-value=0.0013 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-.++|+|+.|+|||||++.|+|.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0027 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
..+..+.|.||.|+|||||++.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999864
No 388
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.25 E-value=0.0031 Score=56.56 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.4
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
..+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4677878887 788999999999999999988875
No 389
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.24 E-value=0.0022 Score=56.23 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|..|||||||++.++|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.23 E-value=0.0023 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+|-.++|+|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999975
No 391
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.23 E-value=0.0022 Score=54.96 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=20.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+|-++.|.|+.||||||+.+.|+-.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999753
No 392
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.23 E-value=0.0021 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 393
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.22 E-value=0.002 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
=.++|+|+.|+|||||++.+++..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999843
No 394
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.22 E-value=0.0027 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-.++|+|+.|+|||||++.+++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999884
No 395
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.21 E-value=0.0025 Score=56.24 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.20 E-value=0.0019 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 397
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.20 E-value=0.0028 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 398
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.20 E-value=0.0022 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 399
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.20 E-value=0.0027 Score=59.17 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 38 GISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.-....++.|+|++||||||+.+.|+.
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999975
No 400
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.19 E-value=0.002 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999986
No 401
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.19 E-value=0.0027 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-.++|+|+.|+|||||++.++|.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 402
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.18 E-value=0.0022 Score=52.77 Aligned_cols=21 Identities=52% Similarity=0.934 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|++|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.18 E-value=0.0022 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 404
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.18 E-value=0.002 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999863
No 405
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.18 E-value=0.0027 Score=53.70 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
-+|-+++|.|+.||||||+.+.|+-.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999997543
No 406
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.18 E-value=0.0022 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 407
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.18 E-value=0.0022 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 408
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.16 E-value=0.0028 Score=59.97 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=28.8
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+++.+ +.+-+|+.++|+|++|+|||||++.|+..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 44444 67789999999999999999999999864
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.16 E-value=0.0026 Score=57.69 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++|+||+|||||||.+.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3799999999999999999985
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0027 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
=.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 411
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.15 E-value=0.0029 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+|.+++|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999997644
No 412
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.15 E-value=0.0027 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 413
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.002 Score=52.66 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999986
No 414
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0074 Score=56.90 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=22.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+.+-.=+.|.||.|+|||+|.++|++.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 344445999999999999999999984
No 415
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0022 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.12 E-value=0.0035 Score=53.32 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+-.+.|+|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 417
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.12 E-value=0.0025 Score=51.27 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 418
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.11 E-value=0.003 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 419
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0023 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-.++|+|+.|||||||++.+++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 420
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.09 E-value=0.0026 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 421
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.09 E-value=0.0024 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
=.++|+|+.|+|||||++.+.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999999873
No 422
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.08 E-value=0.0027 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.08 E-value=0.0027 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 424
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.08 E-value=0.0029 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999953
No 425
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.08 E-value=0.0035 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0024 Score=52.11 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999999987
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.06 E-value=0.0036 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
+|.++.+-|+.||||||+++.|+-.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999997643
No 428
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.05 E-value=0.0032 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++|+|+.|+|||||++.+.|..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998843
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.05 E-value=0.0028 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0025 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998876
No 431
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.05 E-value=0.0037 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999873
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.03 E-value=0.003 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
=.++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999986
No 433
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.02 E-value=0.0034 Score=52.40 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 434
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.02 E-value=0.003 Score=51.50 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 435
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.02 E-value=0.0034 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 436
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0031 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0031 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.00 E-value=0.0033 Score=50.48 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
..+..+.|.||.|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 439
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.98 E-value=0.0031 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-=.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999863
No 440
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.98 E-value=0.0024 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+++
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999986
No 441
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.97 E-value=0.0043 Score=51.68 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=31.3
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG 213 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~ 213 (294)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChHh
Confidence 4678999999755 7887777777666432 235678888887653
No 442
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.96 E-value=0.0036 Score=51.31 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.=.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999976
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.96 E-value=0.0032 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
=.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.96 E-value=0.0029 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.96 E-value=0.0042 Score=52.72 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.+|.++.+-|+.||||||+.+.|+-.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999998643
No 446
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.96 E-value=0.0039 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+.+++|+||+|||||||...|+-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45789999999999999999975
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.96 E-value=0.0038 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++|+||+|||||||.+.|+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 448
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.95 E-value=0.0036 Score=54.64 Aligned_cols=24 Identities=42% Similarity=0.775 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
-.++++|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 489999999999999999999854
No 449
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0044 Score=52.20 Aligned_cols=22 Identities=50% Similarity=0.866 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|++|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.94 E-value=0.0038 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.|.|.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.93 E-value=0.0026 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.92 E-value=0.0031 Score=52.55 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.92 E-value=0.0043 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997643
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.92 E-value=0.0041 Score=56.37 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
++.+++|+||.|||||||...|+-.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999743
No 455
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.92 E-value=0.0036 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999988876
No 456
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.0017 Score=58.30 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=35.3
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEE
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG-LETWATHLA 222 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~ 222 (294)
++.+|++|| ...|++.....+.+.+.+.. ....+|+++++... ...+.+|+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHHHSE
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhccCc
Confidence 667999999 78899988888888876642 23456777766542 333444543
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0039 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
|-+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
No 458
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.91 E-value=0.0039 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++++|+.|+|||||++.|+|.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 459
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0032 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 460
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.88 E-value=0.0037 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCc
Q 022663 44 RCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
No 461
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.88 E-value=0.0036 Score=51.95 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.87 E-value=0.0036 Score=53.17 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.3
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 36 NLGISPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
+-.+.+..++.|+||.||||||..+.|+-
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556778999999999999999999984
No 463
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.84 E-value=0.0035 Score=59.05 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|++|+|||||++.|+|
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999987
No 464
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.79 E-value=0.0038 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+++-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999873
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.79 E-value=0.0023 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.++|.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 466
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.79 E-value=0.0013 Score=57.06 Aligned_cols=28 Identities=50% Similarity=0.741 Sum_probs=22.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 36 NLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+..+.| +.|.||+|+|||||++.|+..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3444555 789999999999999999873
No 467
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0043 Score=50.60 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.72 E-value=0.0033 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 39 ISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 39 i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
..++-+++|.|+.||||||+.+.|+-.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 357789999999999999999999863
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.72 E-value=0.0051 Score=51.54 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
-.++|+|+.|+|||||++-+++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 470
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.70 E-value=0.0038 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.63 E-value=0.0063 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
..+++|+||+|||||||...|+-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34789999999999999999985
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.61 E-value=0.0025 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=4.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 473
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.60 E-value=0.007 Score=47.52 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
..+.-+.|.||.|+|||+|.+.|...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45667999999999999999999863
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.58 E-value=0.0052 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 489999999999999999976
No 475
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0054 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.53 E-value=0.0054 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
=.++|+|+.|+|||||++.+++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 477
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.51 E-value=0.0062 Score=50.93 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.50 E-value=0.0077 Score=50.62 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
++.|+||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 479
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.49 E-value=0.062 Score=45.93 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=38.3
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHHhhhceEEEee
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI----------FDGLETWATHLAYIQ 225 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd----------~~~~~~~~d~v~~l~ 225 (294)
.+.+++++||---..| ..++.+.+. +.|+.||+.-+| ...+..+||.|..|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~----~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMA----NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHH----HTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHH----hCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 334444333 368999999999 344667899998875
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.49 E-value=0.0084 Score=49.34 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=36.0
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHHhhhceEEEeeC
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD----------GLETWATHLAYIQD 226 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~----------~~~~~~d~v~~l~~ 226 (294)
.+++++++||--. +++. +.+.|..+..+ +..||++.++.+ .+..+||.|..|+.
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 3678999999743 5543 44555555544 888999888554 23446888877653
No 481
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.48 E-value=0.0036 Score=58.71 Aligned_cols=31 Identities=45% Similarity=0.515 Sum_probs=25.1
Q ss_pred EEEeCC--CEEEEECCCCCcHHHHHHHHhCCcc
Q 022663 37 LGISPG--SRCLLVGANGSGKTTLLKILAGKHM 67 (294)
Q Consensus 37 l~i~~G--e~~~liG~NGsGKSTLlk~i~G~~~ 67 (294)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5999999999999999999998554
No 482
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.43 E-value=0.046 Score=46.15 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHHhhhceEEEee
Q 022663 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI----------FDGLETWATHLAYIQ 225 (294)
Q Consensus 168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd----------~~~~~~~~d~v~~l~ 225 (294)
+.+++++||--- +|+... +.+..++. .|+.||+.-+| ...+..+||.|..|+
T Consensus 101 ~~dvViIDEaQF-~~~~~V----~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV----EVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH----HHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHH----HHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 776433 55555544 48999999994 345667899998876
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.42 E-value=0.0084 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
|.+++|=|+-||||||+++.|+-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999998643
No 484
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.42 E-value=0.0051 Score=56.77 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=28.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
|.=+.|.+|+..+|+|+.|+|||||+..|+..
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 45567899999999999999999999988763
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.33 E-value=0.013 Score=48.01 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=25.5
Q ss_pred CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663 30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63 (294)
Q Consensus 30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~ 63 (294)
..++..-+.+ .|.-+.|.|+||+|||||...+.
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3455555554 67889999999999999987774
No 486
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.31 E-value=0.0071 Score=50.07 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 022663 44 RCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G 64 (294)
.++|+|+.|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.30 E-value=0.0091 Score=49.10 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=29.7
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212 (294)
Q Consensus 167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~ 212 (294)
.++.+|++||. ..++......+..++.+. ..+..+|++|+...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 46889999995 557777777777776542 23456777777654
No 488
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.25 E-value=0.0094 Score=52.57 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCc
Q 022663 43 SRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
-.++|+|.+|+|||||++.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999853
No 489
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.25 E-value=0.0092 Score=55.30 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|..++|||||++.|+|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
No 490
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.24 E-value=0.011 Score=52.11 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
.++..+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999998743
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.19 E-value=0.0094 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 022663 43 SRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G 64 (294)
.+++|.||+|||||||.+.|+-
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4789999999999999999874
No 492
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.18 E-value=0.0085 Score=56.06 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999883
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.00 E-value=0.0041 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.=.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34689999999999999998876
No 494
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.99 E-value=0.0027 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 022663 44 RCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 44 ~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.++|+|+.|+|||||++.+.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998873
No 495
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.97 E-value=0.013 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGKH 66 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~~ 66 (294)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998643
No 496
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.015 Score=52.15 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
.+..-+.|.||.|+|||||.+.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 45567999999999999999999973
No 497
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.96 E-value=0.013 Score=50.91 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=21.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663 40 SPGSRCLLVGANGSGKTTLLKILAG 64 (294)
Q Consensus 40 ~~Ge~~~liG~NGsGKSTLlk~i~G 64 (294)
.+...+.|.||.|+|||||.+.++.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3445788999999999999999986
No 498
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.92 E-value=0.014 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 022663 42 GSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 42 Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
+..+.|.||.|+|||||.+.++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999864
No 499
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.91 E-value=0.013 Score=52.21 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 022663 43 SRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 43 e~~~liG~NGsGKSTLlk~i~G~ 65 (294)
-.++|+|+.|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.91 E-value=0.014 Score=53.02 Aligned_cols=25 Identities=48% Similarity=0.583 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663 41 PGSRCLLVGANGSGKTTLLKILAGK 65 (294)
Q Consensus 41 ~Ge~~~liG~NGsGKSTLlk~i~G~ 65 (294)
++..+.|.||+|+||||+.++|+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999864
Done!