Query 022666
Match_columns 294
No_of_seqs 163 out of 992
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 1.7E-51 3.7E-56 400.4 24.8 214 78-294 117-330 (537)
2 PF02434 Fringe: Fringe-like; 100.0 4.3E-36 9.4E-41 274.9 8.2 189 79-283 2-209 (252)
3 KOG2246 Galactosyltransferases 100.0 1.3E-32 2.9E-37 263.0 14.1 189 79-291 87-280 (364)
4 PF04646 DUF604: Protein of un 99.8 8.4E-22 1.8E-26 177.9 6.3 79 216-294 1-79 (255)
5 KOG3708 Uncharacterized conser 99.7 3.6E-17 7.9E-22 158.6 8.5 169 78-275 21-191 (681)
6 PLN03193 beta-1,3-galactosyltr 99.6 2.9E-14 6.3E-19 137.3 16.6 183 83-282 139-356 (408)
7 KOG2287 Galactosyltransferases 99.4 1.9E-12 4.1E-17 124.1 15.0 184 82-283 94-308 (349)
8 PF01762 Galactosyl_T: Galacto 99.4 8.2E-12 1.8E-16 109.7 12.8 116 155-277 64-195 (195)
9 PLN03133 beta-1,3-galactosyltr 99.4 9.8E-12 2.1E-16 126.2 15.1 181 82-276 384-592 (636)
10 KOG2288 Galactosyltransferases 99.0 1.4E-09 3E-14 98.7 7.3 116 160-284 98-228 (274)
11 PTZ00210 UDP-GlcNAc-dependent 98.9 2.2E-08 4.8E-13 95.8 12.6 122 160-286 188-326 (382)
12 TIGR03469 HonB hopene-associat 95.7 0.88 1.9E-05 44.0 17.1 97 173-274 132-252 (384)
13 PRK11204 N-glycosyltransferase 95.5 0.65 1.4E-05 45.0 15.8 99 173-278 133-254 (420)
14 PF13506 Glyco_transf_21: Glyc 95.5 0.05 1.1E-06 47.1 6.9 107 173-285 30-156 (175)
15 cd04186 GT_2_like_c Subfamily 95.1 0.051 1.1E-06 44.2 5.8 86 173-278 73-159 (166)
16 cd02520 Glucosylceramide_synth 94.6 0.098 2.1E-06 45.1 6.3 92 173-284 85-177 (196)
17 TIGR03472 HpnI hopanoid biosyn 94.5 2.4 5.2E-05 40.8 16.3 102 173-279 125-248 (373)
18 KOG2246 Galactosyltransferases 94.4 0.068 1.5E-06 51.9 5.3 67 78-145 67-137 (364)
19 cd06434 GT2_HAS Hyaluronan syn 94.2 1.7 3.6E-05 37.9 13.5 103 173-275 76-204 (235)
20 PRK14583 hmsR N-glycosyltransf 93.7 2.3 4.9E-05 42.0 14.8 99 173-278 154-275 (444)
21 cd02526 GT2_RfbF_like RfbF is 92.9 0.52 1.1E-05 41.2 8.0 100 173-277 74-197 (237)
22 PF13641 Glyco_tranf_2_3: Glyc 92.2 0.32 6.8E-06 42.4 5.6 107 160-278 76-204 (228)
23 cd04185 GT_2_like_b Subfamily 91.5 0.66 1.4E-05 39.6 6.8 88 173-277 78-166 (202)
24 PLN03181 glycosyltransferase; 91.3 5.8 0.00012 39.3 13.5 57 152-211 179-235 (453)
25 COG1215 Glycosyltransferases, 91.1 8.2 0.00018 37.1 14.7 176 82-279 53-260 (439)
26 cd06421 CESA_CelA_like CESA_Ce 91.0 0.44 9.6E-06 41.4 5.3 97 173-277 83-204 (234)
27 PF13632 Glyco_trans_2_3: Glyc 90.4 0.81 1.8E-05 39.0 6.3 96 177-278 1-118 (193)
28 PF01755 Glyco_transf_25: Glyc 89.9 1.1 2.5E-05 38.7 6.9 88 153-245 69-189 (200)
29 cd06437 CESA_CaSu_A2 Cellulose 89.3 1.2 2.7E-05 39.0 6.8 98 173-277 86-206 (232)
30 TIGR01556 rhamnosyltran L-rham 88.9 1.4 2.9E-05 40.2 6.9 100 173-277 72-194 (281)
31 cd06427 CESA_like_2 CESA_like_ 88.8 0.76 1.7E-05 40.8 5.1 99 173-278 83-206 (241)
32 cd06532 Glyco_transf_25 Glycos 88.2 0.97 2.1E-05 36.9 5.0 51 154-245 67-117 (128)
33 cd04188 DPG_synthase DPG_synth 87.9 4.1 9E-05 35.1 9.1 100 174-279 82-203 (211)
34 cd04192 GT_2_like_e Subfamily 87.9 2.2 4.8E-05 36.6 7.3 94 173-271 81-195 (229)
35 cd06438 EpsO_like EpsO protein 87.0 0.86 1.9E-05 38.6 4.1 68 173-240 80-169 (183)
36 cd04195 GT2_AmsE_like GT2_AmsE 86.6 1.2 2.7E-05 37.7 4.9 98 173-277 79-194 (201)
37 PTZ00260 dolichyl-phosphate be 86.4 31 0.00066 32.8 16.1 100 173-278 161-286 (333)
38 PF13704 Glyco_tranf_2_4: Glyc 85.5 1.5 3.3E-05 33.3 4.5 24 173-196 70-97 (97)
39 cd06436 GlcNAc-1-P_transferase 85.1 1.6 3.5E-05 37.4 4.9 67 174-241 89-178 (191)
40 cd06442 DPM1_like DPM1_like re 84.7 5.2 0.00011 34.4 8.0 97 174-277 78-196 (224)
41 cd04196 GT_2_like_d Subfamily 84.5 4.5 9.7E-05 34.3 7.4 92 173-270 78-190 (214)
42 cd06439 CESA_like_1 CESA_like_ 84.3 2.2 4.8E-05 37.6 5.6 95 174-278 109-223 (251)
43 cd06420 GT2_Chondriotin_Pol_N 84.1 4.1 8.8E-05 33.8 6.8 92 173-273 78-169 (182)
44 cd02525 Succinoglycan_BP_ExoA 84.0 3.3 7.3E-05 36.0 6.5 100 173-278 80-202 (249)
45 cd04184 GT2_RfbC_Mx_like Myxoc 83.0 2.7 5.9E-05 35.5 5.4 100 173-278 82-195 (202)
46 PRK05454 glucosyltransferase M 83.0 41 0.00088 35.6 15.0 106 173-278 219-350 (691)
47 PLN02726 dolichyl-phosphate be 82.1 8.1 0.00018 34.3 8.3 107 173-286 92-220 (243)
48 cd06435 CESA_NdvC_like NdvC_li 81.0 8 0.00017 33.7 7.8 98 173-278 83-203 (236)
49 PRK11498 bcsA cellulose syntha 79.6 37 0.00081 36.8 13.5 94 173-275 338-460 (852)
50 TIGR03030 CelA cellulose synth 79.6 49 0.0011 35.0 14.2 96 173-276 227-350 (713)
51 COG1216 Predicted glycosyltran 78.3 26 0.00056 32.5 10.7 99 175-278 85-214 (305)
52 cd06913 beta3GnTL1_like Beta 1 78.1 4.8 0.0001 34.9 5.4 97 173-274 83-199 (219)
53 PRK14716 bacteriophage N4 adso 78.1 24 0.00052 35.9 11.0 103 173-277 157-282 (504)
54 cd06433 GT_2_WfgS_like WfgS an 77.9 9.9 0.00021 31.5 7.1 99 173-277 74-187 (202)
55 cd02522 GT_2_like_a GT_2_like_ 77.4 8.1 0.00018 33.1 6.6 92 174-273 72-176 (221)
56 TIGR03111 glyc2_xrt_Gpos1 puta 73.3 31 0.00067 34.0 10.2 95 173-274 130-257 (439)
57 PF05637 Glyco_transf_34: gala 72.1 4.1 8.9E-05 37.1 3.5 33 153-188 58-90 (239)
58 cd00761 Glyco_tranf_GTA_type G 70.6 13 0.00029 28.5 5.8 71 174-268 77-149 (156)
59 cd04187 DPM1_like_bac Bacteria 67.1 17 0.00037 30.2 6.1 70 174-243 80-164 (181)
60 cd02510 pp-GalNAc-T pp-GalNAc- 64.8 17 0.00037 33.3 6.1 99 173-277 82-218 (299)
61 PRK10714 undecaprenyl phosphat 61.7 16 0.00034 34.6 5.3 71 173-243 89-174 (325)
62 PF02485 Branch: Core-2/I-Bran 61.1 51 0.0011 29.3 8.3 151 85-243 1-172 (244)
63 cd04191 Glucan_BSP_ModH Glucan 60.9 26 0.00055 32.1 6.4 105 173-278 94-225 (254)
64 PF00535 Glycos_transf_2: Glyc 56.5 5.4 0.00012 31.7 1.0 37 174-210 78-115 (169)
65 cd04179 DPM_DPG-synthase_like 53.5 18 0.0004 29.8 3.8 38 174-211 79-117 (185)
66 KOG4748 Subunit of Golgi manno 46.5 24 0.00051 34.4 3.8 56 150-210 154-221 (364)
67 PLN03182 xyloglucan 6-xylosylt 46.3 24 0.00052 34.9 3.8 35 151-188 177-211 (429)
68 PRK11234 nfrB bacteriophage N4 44.2 1.2E+02 0.0027 32.3 9.0 102 174-277 155-279 (727)
69 cd06423 CESA_like CESA_like is 43.6 37 0.00079 26.7 4.0 27 173-199 77-103 (180)
70 PF10111 Glyco_tranf_2_2: Glyc 41.3 88 0.0019 28.6 6.7 98 173-275 87-213 (281)
71 COG3306 Glycosyltransferase in 40.8 1.8E+02 0.0038 26.9 8.5 23 225-247 154-176 (255)
72 PF09258 Glyco_transf_64: Glyc 40.2 77 0.0017 29.0 6.0 98 173-277 74-191 (247)
73 KOG3832 Predicted amino acid t 33.3 39 0.00084 30.8 2.8 52 6-60 103-160 (319)
74 PLN02893 Cellulose synthase-li 31.0 2.3E+02 0.005 30.4 8.4 30 173-202 297-328 (734)
75 cd02514 GT13_GLCNAC-TI GT13_GL 30.5 4.2E+02 0.0091 25.5 9.5 77 161-241 88-174 (334)
76 PF12433 PV_NSP1: Parvovirus n 28.8 35 0.00076 25.7 1.5 24 218-242 37-66 (80)
77 cd04190 Chitin_synth_C C-termi 28.3 51 0.0011 29.3 2.7 103 173-275 72-211 (244)
78 PRK15489 nfrB bacteriophage N4 25.0 8.6E+02 0.019 26.0 11.5 99 174-274 163-284 (703)
79 PF04666 Glyco_transf_54: N-Ac 23.7 5.4E+02 0.012 24.3 8.8 96 173-282 168-278 (297)
80 PHA02132 hypothetical protein 23.1 1.3E+02 0.0029 22.5 3.6 39 9-60 34-72 (86)
81 PHA02688 ORF059 IMV protein VP 21.2 2.5E+02 0.0054 27.0 5.9 74 171-246 113-202 (323)
82 PF14071 YlbD_coat: Putative c 20.6 17 0.00036 30.1 -1.8 17 175-191 29-45 (124)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-51 Score=400.41 Aligned_cols=214 Identities=48% Similarity=0.814 Sum_probs=200.3
Q ss_pred CCCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCccccCCCCchhHHH
Q 022666 78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVR 157 (294)
Q Consensus 78 ~~~~~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r 157 (294)
.+++.+||+|||+|+.+.|++|.++++.||+++.++++|+.|+...+ ...+..+|++.|+.|+++|.|+++.|+.++++
T Consensus 117 ~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~-~~~~~~~P~i~is~d~s~f~y~~~~Gh~sa~r 195 (537)
T PLN03153 117 AELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSP-EEGDDSLPPIMVSEDTSRFRYTNPTGHPSGLR 195 (537)
T ss_pred CCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCC-CCCcCCCCCEEeCCCcccccccCCCCcHHHHH
Confidence 56999999999999999999999999999999999999999987542 23467899999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHH
Q 022666 158 VARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL 237 (294)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~l 237 (294)
+++++.++++.+. +++||||++||||||+++||+++|++||+++++|||..+|...++..++|.|++|||||+||++|
T Consensus 196 I~rmv~et~~~~~--pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPL 273 (537)
T PLN03153 196 ISRIVLESFRLGL--PDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPL 273 (537)
T ss_pred HHHHHHHHHHhhC--CCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHH
Confidence 9999999987765 99999999999999999999999999999999999999998888778888899999999999999
Q ss_pred HHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCcccCCCCCCCccccC
Q 022666 238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQSCEC 294 (294)
Q Consensus 238 l~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~~gd~~G~~e~ 294 (294)
+++|.+..+.|..+|...+++|.+||+||+++||++|++++|||+|++||++||||+
T Consensus 274 ae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les 330 (537)
T PLN03153 274 AEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSS 330 (537)
T ss_pred HHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhc
Confidence 999999999999888878899999999999999999999999999999999999996
No 2
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=100.00 E-value=4.3e-36 Score=274.92 Aligned_cols=189 Identities=24% Similarity=0.399 Sum_probs=111.3
Q ss_pred CCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCCeEEE-EecCCCCCCCCCCCCCCce----eecCCCCCccccCCCCch
Q 022666 79 PLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALT-FLDRAADSSSAGDPSLPRI----VISADTSKFPFTFPKGLR 153 (294)
Q Consensus 79 ~~~~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~~~~v-fsD~~~~~~~~~~~~lp~v----~i~~d~~~~~y~~~~g~~ 153 (294)
+++.++|+|+|+|++++|++|++++++||++++.+..+ |+|.++ ..+|+. .+..++..-+. .
T Consensus 2 ~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d-------~~l~~~~~~~l~~~~~~~~~~----~-- 68 (252)
T PF02434_consen 2 PVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAED-------PSLPTVTGVHLVNPNCDAGHC----R-- 68 (252)
T ss_dssp ---GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS---------HHHHHHHGGGEEE---------------
T ss_pred CcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccc-------cccccccccccccCCCcchhh----H--
Confidence 57899999999999999999999999999998876666 799874 334543 22333322010 0
Q ss_pred hHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcc----------ccccccc
Q 022666 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ----------NAKHSFG 223 (294)
Q Consensus 154 ~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~----------~~~~g~~ 223 (294)
.++.. .+...++.+. .+++|||+++||||||+++||+++|++||+++|+|||+++..... ....+|.
T Consensus 69 ~~~~~--~~~~~y~~~~-~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (252)
T PF02434_consen 69 KTLSC--KMAYEYDHFL-NSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFW 145 (252)
T ss_dssp ----H--HHHHHHHHHH-HHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred HHHHH--HHHHHHHhhh-cCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceE
Confidence 11111 1111122211 278999999999999999999999999999999999998743210 1234567
Q ss_pred ccccCccccccHHHHHHHHhhhhHhh--hhcc-cCCcchHHHHHHHHH-hCCceecCCCCcccC
Q 022666 224 MAFGGGGFAISHSLARVLAGALDSCL--MRYA-HLYGSDARVFSCLVE-LGVGLTPEPGFHQNT 283 (294)
Q Consensus 224 ~a~GGaG~vlSr~ll~~L~~~~d~C~--~~~~-~~~~~D~~lg~Cl~~-lGV~lt~~p~fhq~d 283 (294)
|++|||||||||+++++|.+....|. .... ...++|+.||.|++. +||++|+++.|||+-
T Consensus 146 f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~ 209 (252)
T PF02434_consen 146 FATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHL 209 (252)
T ss_dssp EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SS
T ss_pred eeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccC
Confidence 89999999999999999988665543 2111 246799999999998 999999999999963
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=263.01 Aligned_cols=189 Identities=30% Similarity=0.483 Sum_probs=156.8
Q ss_pred CCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCccccCCCCchhHHHH
Q 022666 79 PLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRV 158 (294)
Q Consensus 79 ~~~~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r~ 158 (294)
......|+|+|.|++.++.+|++.+++||.++|.+..+|+..-. +.+..+|+|. |..+.|.+.+|++
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s----~~~~~f~~v~---------~~~~~g~~~~~~k 153 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLS----KDDSRFPTVY---------YNLPDGYRSLWRK 153 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCccCC----CCCCcCceee---------ccCCcchHHHHHH
Confidence 46778999999999999999999999999998999999884311 1145677763 3344577889999
Q ss_pred HHHHHHHH-HhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHH
Q 022666 159 ARVVKEAV-DLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL 237 (294)
Q Consensus 159 ~~~i~~~~-~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~l 237 (294)
.+.+.+.+ ++.. +++|||+++|||||+++|||+++|.+|||++|+|||..++.+.++ | |.+||||+++|+++
T Consensus 154 tr~~~~yv~~~~~--~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~---~--y~~g~ag~~ls~aa 226 (364)
T KOG2246|consen 154 TRIAFKYVYDHIL--KDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQN---G--YSSGGAGYVLSFAA 226 (364)
T ss_pred HHHHHHHHHHhcc--CCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccccccc---c--cccCCCCcceeHHH
Confidence 87766654 4554 899999999999999999999999999999999999999877654 3 36688888888888
Q ss_pred HHHHHh----hhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCcccCCCCCCCcc
Q 022666 238 ARVLAG----ALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQS 291 (294)
Q Consensus 238 l~~L~~----~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~~gd~~G~ 291 (294)
++.+++ ..+.|.+++.. +++|..||+|++++||+++++ ||.|.+|+..|+
T Consensus 227 ~~~la~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~ 280 (364)
T KOG2246|consen 227 LRRLAERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPL 280 (364)
T ss_pred HHHHHHHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCC
Confidence 877765 45779987766 789999999999999999998 999999998876
No 4
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=99.85 E-value=8.4e-22 Score=177.91 Aligned_cols=79 Identities=53% Similarity=0.874 Sum_probs=75.8
Q ss_pred ccccccccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCcccCCCCCCCccccC
Q 022666 216 QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQSCEC 294 (294)
Q Consensus 216 ~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~~gd~~G~~e~ 294 (294)
||..++|+||+|||||+||++|+++|.++.|.|+++|...+++|.++..|++++||++|.+++|||+||+||++|||||
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a 79 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEA 79 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeec
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999999996
No 5
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.6e-17 Score=158.64 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=132.4
Q ss_pred CCCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCCeEEEEecCCCCCCCCCCCCCCceee-cCCCCCccccCCCCchhHH
Q 022666 78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVI-SADTSKFPFTFPKGLRSAV 156 (294)
Q Consensus 78 ~~~~~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i-~~d~~~~~y~~~~g~~~a~ 156 (294)
...+.++++++|+|-. +-+-+++.|.+.+.+++.+|.|...- +..+....+ +.. ..+.+|
T Consensus 21 ELG~RErl~~aVmte~----tlA~a~NrT~ahhvprv~~F~~~~~i-----~~~~a~~~~vs~~----------d~r~~~ 81 (681)
T KOG3708|consen 21 ELGTRERLMAAVMTES----TLALAINRTLAHHVPRVHLFADSSRI-----DNDLAQLTNVSPY----------DLRGQK 81 (681)
T ss_pred hhhhHHHHHHHHHHHH----HHHHHHHHHHHhhcceeEEeeccccc-----cccHhhccccCcc----------ccCccc
Confidence 4567889999999921 66678999999999999999987632 222222222 221 223567
Q ss_pred HHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHH
Q 022666 157 RVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHS 236 (294)
Q Consensus 157 r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ 236 (294)
+.+.++++++++++ .++|||+++-|+|||+...|.+++.+.+-++++|+|...++ ..| -|++|.|+.||++
T Consensus 82 ~~s~vl~~l~~~~~--~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~-----gs~--rC~l~~G~LLS~s 152 (681)
T KOG3708|consen 82 THSMVLGLLFNMVH--NNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED-----GSG--RCRLDTGMLLSQS 152 (681)
T ss_pred cHHHHHHHHHHhhc--cccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC-----ccC--ccccccceeecHH
Confidence 77788888888776 89999999999999999999999999999999999965431 122 2999999999999
Q ss_pred HHHHHHhhhhHhhhhcccCCcchHHHHHHHHH-hCCceec
Q 022666 237 LARVLAGALDSCLMRYAHLYGSDARVFSCLVE-LGVGLTP 275 (294)
Q Consensus 237 ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~-lGV~lt~ 275 (294)
++++|.++.+.|... ...--.|+.+|+|+.. +||.|+.
T Consensus 153 ~l~~lrnnle~C~~~-~lsad~d~~lgrCi~~At~v~C~~ 191 (681)
T KOG3708|consen 153 LLHALRNNLEGCRND-ILSADPDEWLGRCIQDATGVGCKP 191 (681)
T ss_pred HHHHHHhhHHHhhcc-cccCCcHHHHHHHHHHhhcCCccc
Confidence 999999999999642 2222378999999986 8999873
No 6
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.60 E-value=2.9e-14 Score=137.28 Aligned_cols=183 Identities=19% Similarity=0.172 Sum_probs=116.0
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHhcCCC-----------CeEEEEecCCCC---CCC-CCC---CCCCceee-cCCCCC
Q 022666 83 RHLLFSIASSSSSWPRRRSYVRLWYSPNS-----------TRALTFLDRAAD---SSS-AGD---PSLPRIVI-SADTSK 143 (294)
Q Consensus 83 ~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~-----------~~~~vfsD~~~~---~~~-~~~---~~lp~v~i-~~d~~~ 143 (294)
-.++++|.|++++.++| .+|+.||++.+ -.+.+++..... ..+ .++ .....+.+ ...+
T Consensus 139 ~~LvIgI~Sap~~~~RR-~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvD-- 215 (408)
T PLN03193 139 YLMVVGINTAFSSRKRR-DSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVE-- 215 (408)
T ss_pred EEEEEEEeCCCCCHHHH-HHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEeccc--
Confidence 36889999999887777 66666666421 234444443321 000 011 11223333 1111
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC--cc-----
Q 022666 144 FPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY--EQ----- 216 (294)
Q Consensus 144 ~~y~~~~g~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~--~~----- 216 (294)
.|.+. ..+....++++++. .++++|+++|||+||++++|..+|++......+|+|....+. ..
T Consensus 216 -sY~NL-----T~KTl~~f~wA~~~----~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky 285 (408)
T PLN03193 216 -GYLEL-----SAKTKTYFATAVAM----WDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRY 285 (408)
T ss_pred -ccccc-----hHHHHHHHHHHHHc----CCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcC
Confidence 12221 22333445554432 689999999999999999999999887666679999974221 00
Q ss_pred ----c-----ccccccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCccc
Q 022666 217 ----N-----AKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQN 282 (294)
Q Consensus 217 ----~-----~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~ 282 (294)
. ...-|+....|+|||||+.+++.|..+...- ..| ..||+.+|.|+..++|...|++.||..
T Consensus 286 ~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L-~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc~ 356 (408)
T PLN03193 286 HEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVL-HKY---ANEDVSLGSWFIGLDVEHIDDRRLCCG 356 (408)
T ss_pred cCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhh-ccc---CcchhhhhhHhccCCceeeecccccCC
Confidence 0 1123444466789999999999998654432 112 249999999998899999999999863
No 7
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.9e-12 Score=124.08 Aligned_cols=184 Identities=22% Similarity=0.289 Sum_probs=120.7
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHhcC-C-----CCeEEEEecCCCCCC---CCC---CCCCCceee-c-CCCCCcccc
Q 022666 82 RRHLLFSIASSSSSWPRRRSYVRLWYSP-N-----STRALTFLDRAADSS---SAG---DPSLPRIVI-S-ADTSKFPFT 147 (294)
Q Consensus 82 ~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~-~-----~~~~~vfsD~~~~~~---~~~---~~~lp~v~i-~-~d~~~~~y~ 147 (294)
..+|+++|+|.++...+|. ++++||+. + ..+.++++....... ..+ ......+.+ . .|+ |.
T Consensus 94 ~~~lLl~V~S~~~~farR~-aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dt----y~ 168 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRN-AIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDT----YF 168 (349)
T ss_pred CceEEEEEecCCCCHHHHH-HHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccc----hh
Confidence 4689999999999998884 55555553 2 134555554443210 000 011223322 1 232 21
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccC-CCCCCeEEeecCCCCc-----------
Q 022666 148 FPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGYE----------- 215 (294)
Q Consensus 148 ~~~g~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~y-d~~~p~yiG~~~e~~~----------- 215 (294)
+ -......++.+...+- ++++.++++|||+||++++|.++|.+. ++.+.+|.|...+...
T Consensus 169 n-----ltlKtl~~l~w~~~~c---p~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyV 240 (349)
T KOG2287|consen 169 N-----LTLKTLAILLWGVSKC---PDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYV 240 (349)
T ss_pred c-----hHHHHHHHHHHHHhcC---CcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCcc
Confidence 1 2344445555544332 899999999999999999999999999 9999999998764310
Q ss_pred ---ccccccccccccCccccccHHHHHHHHhhhhHhhhhcccCC-cchHHHHHHHHHh-CCceecCCCCcccC
Q 022666 216 ---QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLY-GSDARVFSCLVEL-GVGLTPEPGFHQNT 283 (294)
Q Consensus 216 ---~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~-~~D~~lg~Cl~~l-GV~lt~~p~fhq~d 283 (294)
..+...|+...+|+||++|+.++++|...... ...+ -||+.+|.|+++. |+...+.+++....
T Consensus 241 p~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~-----~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~ 308 (349)
T KOG2287|consen 241 PESEYPCSVYPPYASGPGYVISGDAARRLLKASKH-----LKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP 308 (349)
T ss_pred CHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHhcCCCcccCccccccc
Confidence 11222466667789999999999999984222 1233 3999999999985 99988888754443
No 8
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.37 E-value=8.2e-12 Score=109.69 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCCCCc----c----------cc
Q 022666 155 AVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGYE----Q----------NA 218 (294)
Q Consensus 155 a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~~~e~~~----~----------~~ 218 (294)
..+...+++++.++- +++++++++|||+||++++|.++|... +..+..+.|....... . ..
T Consensus 64 t~K~~~~~~w~~~~c---~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~ 140 (195)
T PF01762_consen 64 TLKTLAGLKWASKHC---PNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYP 140 (195)
T ss_pred hHHHHHHHHHHHhhC---CchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecc
Confidence 344456677766543 789999999999999999999999887 7777777788653210 0 01
Q ss_pred cccccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 219 KHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 219 ~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
..-|+....|+||+||+.+++.|...... .....-||+.+|.|+..+||+.++.|
T Consensus 141 ~~~yP~y~~G~~yvls~~~v~~i~~~~~~----~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 141 DDYYPPYCSGGGYVLSSDVVKRIYKASSH----TPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred cccCCCcCCCCeEEecHHHHHHHHHHhhc----CCCCCchHHHHHHHHHHCCCCccCCC
Confidence 11233333578999999999999985322 22334499999999999999998865
No 9
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.37 E-value=9.8e-12 Score=126.17 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=109.3
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHhcCCC------CeEEEEecCCCCC-CC-CCC---CCCCceeecCCCCCccccCCC
Q 022666 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPNS------TRALTFLDRAADS-SS-AGD---PSLPRIVISADTSKFPFTFPK 150 (294)
Q Consensus 82 ~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~------~~~~vfsD~~~~~-~~-~~~---~~lp~v~i~~d~~~~~y~~~~ 150 (294)
.-.++++|.|++++.++| .+|+.||++.. -...+++....+. .+ .+. .....+.+ .|..+ .|.+
T Consensus 384 ~~~LlI~V~Sap~nf~rR-~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq-~dF~D-sY~N-- 458 (636)
T PLN03133 384 PLDLFIGVFSTANNFKRR-MAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQL-MPFVD-YYSL-- 458 (636)
T ss_pred ceEEEEEEeCCcccHHHH-HHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEE-Eeeec-hhhh--
Confidence 347999999999988777 56666666421 2344444432211 00 000 11222222 11110 1211
Q ss_pred CchhHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC----c----------c
Q 022666 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY----E----------Q 216 (294)
Q Consensus 151 g~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~----~----------~ 216 (294)
..++...++.... +. +++++++++|||+||++++|.++|.+.+..+.+|+|...... . .
T Consensus 459 ---LTlKtl~~~~wa~--~c--~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~e 531 (636)
T PLN03133 459 ---ITWKTLAICIFGT--EV--VSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEE 531 (636)
T ss_pred ---hHHHHHHHHHHHH--hC--CCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHH
Confidence 1233333343322 22 789999999999999999999999888888889999864221 0 1
Q ss_pred cccccccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHH---hCCceecC
Q 022666 217 NAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVE---LGVGLTPE 276 (294)
Q Consensus 217 ~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~---lGV~lt~~ 276 (294)
.....|+...+|+||+||+.+++.|........ .....-||+.+|.|+++ +|+++.+.
T Consensus 532 yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~--l~~f~lEDVyvGi~l~~l~k~gl~v~~~ 592 (636)
T PLN03133 532 WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGR--LKMFKLEDVAMGIWIAEMKKEGLEVKYE 592 (636)
T ss_pred CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcc--cCcCChhhHhHHHHHHHhcccCCCceee
Confidence 122346666678999999999999987643221 11222499999999874 56665443
No 10
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.4e-09 Score=98.66 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=83.2
Q ss_pred HHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC--cc--------c---ccc--cccc
Q 022666 160 RVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY--EQ--------N---AKH--SFGM 224 (294)
Q Consensus 160 ~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~--~~--------~---~~~--g~~~ 224 (294)
.++..++++ =++++|+++|||+||+++.|...|+++-....+|||....+. .+ . ... -|++
T Consensus 98 ~~f~~A~~~----~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~~g~Yfrh 173 (274)
T KOG2288|consen 98 AFFSAAVAH----WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKFGDNGNYFRH 173 (274)
T ss_pred HHHHHHHHh----ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhcCcccccchh
Confidence 345555544 379999999999999999999999998777789999964221 00 0 001 1345
Q ss_pred cccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCcccCC
Q 022666 225 AFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTS 284 (294)
Q Consensus 225 a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~ 284 (294)
|. |+||+||+.++.-|.-+.+- ...| -.|||.+|..+.-+.|.-.++|.+|.---
T Consensus 174 A~-G~~YvlS~dLa~yi~in~~l-L~~y---~nEDVSlGaW~~gldV~h~dd~rlC~~~~ 228 (274)
T KOG2288|consen 174 AT-GGGYVLSKDLATYISINRQL-LHKY---ANEDVSLGAWMIGLDVEHVDDPRLCCSTP 228 (274)
T ss_pred cc-CceEEeeHHHHHHHHHhHHH-HHhh---ccCCcccceeeeeeeeeEecCCcccccch
Confidence 65 57899999999988765433 2222 23999999998878888888888875443
No 11
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.88 E-value=2.2e-08 Score=95.77 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=79.5
Q ss_pred HHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHHHH
Q 022666 160 RVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLAR 239 (294)
Q Consensus 160 ~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~ 239 (294)
..++++++. .|++++++++|||+|++++++...|.. .|.+.+|+|......... ..+++...+|.||+||+.+++
T Consensus 188 l~~~wA~~~---cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~~~~~p~-Rd~~PpY~~G~gYvLSrDVA~ 262 (382)
T PTZ00210 188 LWLRFALHM---FPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYNYYNRIW-RRNQLTYVNGYCITLSRDTAQ 262 (382)
T ss_pred HHHHHHHHh---CCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeCCCCccc-cCCCCCccccceeeccHHHHH
Confidence 344544443 289999999999999999999999954 567789999976432111 112233456789999999999
Q ss_pred HHHhhhhH--h---------hhhcc--cCCcchHHHHHHHHH-hC---CceecCCCCcccCCCC
Q 022666 240 VLAGALDS--C---------LMRYA--HLYGSDARVFSCLVE-LG---VGLTPEPGFHQNTSSA 286 (294)
Q Consensus 240 ~L~~~~d~--C---------~~~~~--~~~~~D~~lg~Cl~~-lG---V~lt~~p~fhq~d~~g 286 (294)
.|.....- - .+.|. ....||+.+|.-|.. ++ .-...+..-|-+|++.
T Consensus 263 ~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~ 326 (382)
T PTZ00210 263 AIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGK 326 (382)
T ss_pred HHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCC
Confidence 99875211 1 01111 123499999999964 43 2233444445556653
No 12
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.65 E-value=0.88 Score=44.01 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=59.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCC-CCeEEeecC---CCCcc--------------------cccccccccccC
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDD-RWFYVGSNS---EGYEQ--------------------NAKHSFGMAFGG 228 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~-~p~yiG~~~---e~~~~--------------------~~~~g~~~a~GG 228 (294)
++.+|+++.|+|+.+.++.|.++++.+... ..+.-|.+. +.... +...+.....-|
T Consensus 132 ~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 211 (384)
T TIGR03469 132 PPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAG 211 (384)
T ss_pred CCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecc
Confidence 348999999999999998888888766432 233222221 11000 000000011236
Q ss_pred ccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCcee
Q 022666 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (294)
Q Consensus 229 aG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (294)
++.+++|++.+++....+.. ....||+.+++-+++.|-.+.
T Consensus 212 ~~~lirr~~~~~vGGf~~~~-----~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 212 GCILIRREALERIGGIAAIR-----GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred eEEEEEHHHHHHcCCHHHHh-----hCcccHHHHHHHHHHcCCcEE
Confidence 78999999999986543211 124599999999998875543
No 13
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.53 E-value=0.65 Score=45.01 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=63.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCCCCc-------c--------------cccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGYE-------Q--------------NAKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~~~e~~~-------~--------------~~~~g~~~a~GGa 229 (294)
.+.+|+++.|+|+.+..+.|.++++.+ |++-...-|.+..... + ....|..++.+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 468999999999999999999998877 3332233333210000 0 0111222344678
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+.++.+++++++... ++ ....||..++.-+.+.|.++...|.
T Consensus 213 ~~~~rr~~l~~vgg~-~~------~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 213 ITAFRKSALHEVGYW-ST------DMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred eeeeeHHHHHHhCCC-CC------CcccchHHHHHHHHHcCCeEEeccc
Confidence 889999999886432 21 2346999999988888877765553
No 14
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.45 E-value=0.05 Score=47.13 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=70.6
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEE----eecCCCCc-------cc-------ccccccccccCccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYV----GSNSEGYE-------QN-------AKHSFGMAFGGGGFAI 233 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yi----G~~~e~~~-------~~-------~~~g~~~a~GGaG~vl 233 (294)
.+++++++.|+|+.+.++-|.++++.+. |+-.+.- +.+.++.. .. ...+.+++. |+.+++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-G~~m~~ 108 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAW-GGSMAF 108 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCcee-cceeee
Confidence 6799999999999999999999988763 4444333 33322211 00 011334444 566999
Q ss_pred cHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC-CcccCCC
Q 022666 234 SHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG-FHQNTSS 285 (294)
Q Consensus 234 Sr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~-fhq~d~~ 285 (294)
.+++++++... +. ......||..+|+.+++.|.++...+. ..|..+.
T Consensus 109 rr~~L~~~GG~-~~----l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 109 RREALEEIGGF-EA----LADYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred EHHHHHHcccH-HH----HhhhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 99999887431 11 123456999999999999988877663 4554444
No 15
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.13 E-value=0.051 Score=44.22 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC-eEEeecCCCCcccccccccccccCccccccHHHHHHHHhhhhHhhhh
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p-~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (294)
-+.+|++++|||..+..+.+.+++..+..... ..+|.. ..|+++++++++++++....+..
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--- 134 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGFDEDF--- 134 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCCChhh---
Confidence 36899999999999998888888875443322 233322 36788999999999875432222
Q ss_pred cccCCcchHHHHHHHHHhCCceecCCC
Q 022666 252 YAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
..+++|..+...+...|.++...|.
T Consensus 135 --~~~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 135 --FLYYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred --hccccHHHHHHHHHHcCCeEEEccc
Confidence 1256899999888888887766554
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.58 E-value=0.098 Score=45.06 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=64.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC-CCCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHhhhhHhhhh
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y-d~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (294)
...+|++++|+|+.+.++-|.+++..+ ++.-....|. +..|++.++.+++++++... +.-
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~---------------~~~g~~~~~r~~~~~~~ggf-~~~--- 145 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL---------------CAFGKSMALRREVLDAIGGF-EAF--- 145 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee---------------cccCceeeeEHHHHHhccCh-HHH---
Confidence 468999999999999888888888775 3332232222 23578899999999987543 211
Q ss_pred cccCCcchHHHHHHHHHhCCceecCCCCcccCC
Q 022666 252 YAHLYGSDARVFSCLVELGVGLTPEPGFHQNTS 284 (294)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~ 284 (294)
.....+|..++.-+...|..+...|.-..+..
T Consensus 146 -~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~ 177 (196)
T cd02520 146 -ADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPL 177 (196)
T ss_pred -hHHHHHHHHHHHHHHHcCCeEEEcchheeccC
Confidence 11235899999999888988777666554443
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.45 E-value=2.4 Score=40.79 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=64.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecC----CCCc-------cc----------ccccccccccCcc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS----EGYE-------QN----------AKHSFGMAFGGGG 230 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~----e~~~-------~~----------~~~g~~~a~GGaG 230 (294)
.+.+|+++.|+|+.+.++-|.++++.+. ++....-|... .... .+ ...+-.....|+.
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 204 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGAT 204 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccccChh
Confidence 5789999999999999999999988874 34333323211 1100 00 0001011234677
Q ss_pred ccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCC
Q 022666 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGF 279 (294)
Q Consensus 231 ~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~f 279 (294)
+++.|++++++....+. .....||..++.-+.+.|.++...+.-
T Consensus 205 ~a~RR~~l~~iGGf~~~-----~~~~~ED~~l~~~i~~~G~~v~~~~~~ 248 (373)
T TIGR03472 205 MALRRATLEAIGGLAAL-----AHHLADDYWLGELVRALGLRVVLAPVV 248 (373)
T ss_pred hheeHHHHHHcCChHHh-----cccchHHHHHHHHHHHcCCeEEecchh
Confidence 89999999998754211 123459999999999888777655543
No 18
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=94.37 E-value=0.068 Score=51.87 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=43.6
Q ss_pred CCCCCCcEEEE-EecCCCchhhHHHHHHHHhcCCCCeEEEEecCCCCC-CCC--CCCCCCceeecCCCCCcc
Q 022666 78 NPLTRRHLLFS-IASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADS-SSA--GDPSLPRIVISADTSKFP 145 (294)
Q Consensus 78 ~~~~~~~Ilf~-I~Ts~~~~~~R~~~ik~ww~~~~~~~~vfsD~~~~~-~~~--~~~~lp~v~i~~d~~~~~ 145 (294)
...+..++++| +.++...+..|-..+.-||..+..+..+.++..-+. ... ...-+|.+ ++.++.+|+
T Consensus 67 ~~~~i~~~~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~s~~~~~f~ 137 (364)
T KOG2246|consen 67 LTTDILHLVFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-LSKDDSRFP 137 (364)
T ss_pred cccchhhhccCCccccchhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCcc-CCCCCCcCc
Confidence 56789999999 888888777777888888876666666666553221 111 12234555 677776543
No 19
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.21 E-value=1.7 Score=37.91 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecC---CC--Cc-----c-------------cccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS---EG--YE-----Q-------------NAKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~---e~--~~-----~-------------~~~~g~~~a~GGa 229 (294)
.+.+|++++|+|+.+..+.|.+++..++..+--.+|... .. .. . ...++--++..|+
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 155 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGR 155 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCc
Confidence 468999999999999999999999888522222222211 00 00 0 0111111234567
Q ss_pred cccccHHHHHHHHhhhh---HhhhhcccCCcchHHHHHHHHHhCCceec
Q 022666 230 GFAISHSLARVLAGALD---SCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d---~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (294)
..++.++++++...... ++.-......++|..++.=+.+.|..+..
T Consensus 156 ~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~ 204 (235)
T cd06434 156 TAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVY 204 (235)
T ss_pred HHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEE
Confidence 77888888887543211 22211223456899998888777776543
No 20
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=93.74 E-value=2.3 Score=41.98 Aligned_cols=99 Identities=12% Similarity=-0.041 Sum_probs=64.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCCCC-----c--cc--------------ccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGY-----E--QN--------------AKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~~~e~~-----~--~~--------------~~~g~~~a~GGa 229 (294)
.+.+++++.|+|+.+..+.|.++++.+ |++-...-|.+.... . +. ..+|-.++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 568999999999999999998888766 443333333321000 0 00 112223455678
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+.++.+++++++....+ ....||..++.-+...|-.+..+|.
T Consensus 234 ~~~~rr~al~~vGg~~~-------~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 234 VAAFRRRALADVGYWSP-------DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred eeEEEHHHHHHcCCCCC-------CcccccHHHHHHHHHcCCeEEEeec
Confidence 88999999888643211 2345999999999988888776664
No 21
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.88 E-value=0.52 Score=41.18 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=58.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHH---ccCCCCCCe-EEeecCCC-C-------ccccc----------ccc--cccccC
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTL---SKYDDDRWF-YVGSNSEG-Y-------EQNAK----------HSF--GMAFGG 228 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L---~~yd~~~p~-yiG~~~e~-~-------~~~~~----------~g~--~~a~GG 228 (294)
.+++|++++|+|+.+.++.|.+++ ..+..+... ..|..... . ..... ... .....|
T Consensus 74 ~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T cd02526 74 NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLIT 153 (237)
T ss_pred CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeec
Confidence 478999999999999988888885 323222222 22222100 0 00000 000 011236
Q ss_pred ccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 229 aG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
+|.++++++++++....+.. ...++|..+..-+.+.|..+...|
T Consensus 154 ~~~~~rr~~~~~~ggfd~~~-----~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 154 SGSLISLEALEKVGGFDEDL-----FIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred cceEEcHHHHHHhCCCCHHH-----cCccchHHHHHHHHHcCCcEEEEc
Confidence 78899999999976532222 123479999888888887655444
No 22
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.19 E-value=0.32 Score=42.39 Aligned_cols=107 Identities=23% Similarity=0.256 Sum_probs=59.0
Q ss_pred HHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccC-CCCCCeEEeecC-CCC--------------c------cc
Q 022666 160 RVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNS-EGY--------------E------QN 217 (294)
Q Consensus 160 ~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~y-d~~~p~yiG~~~-e~~--------------~------~~ 217 (294)
..+.+..+. -+.+|++++|||+.+.++-|.++++.+ ++.-...-|... ... . ..
T Consensus 76 ~a~n~~~~~----~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (228)
T PF13641_consen 76 RALNEALAA----ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGR 151 (228)
T ss_dssp HHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-
T ss_pred HHHHHHHHh----cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhh
Confidence 344444443 348999999999999988888888777 444343333321 000 0 00
Q ss_pred ccccccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 218 AKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 218 ~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
...+. .+..|+++++.+++++++... +. ...++|..++.-+...|.++...|.
T Consensus 152 ~~~~~-~~~~G~~~~~rr~~~~~~g~f-d~------~~~~eD~~l~~r~~~~G~~~~~~~~ 204 (228)
T PF13641_consen 152 RALGV-AFLSGSGMLFRRSALEEVGGF-DP------FILGEDFDLCLRLRAAGWRIVYAPD 204 (228)
T ss_dssp B-----S-B--TEEEEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEEEE
T ss_pred cccce-eeccCcEEEEEHHHHHHhCCC-CC------CCcccHHHHHHHHHHCCCcEEEECC
Confidence 11121 233579999999999998642 22 2345999999999889988766553
No 23
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.50 E-value=0.66 Score=39.59 Aligned_cols=88 Identities=24% Similarity=0.292 Sum_probs=59.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHhhhhHhhhh
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (294)
.+.+|++++|||..+..+.|.++++.+. +.-.++.|.... ..+ .++|.++.+++++++.- ++.-
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~g~-~~~~--- 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD------PDG-----SFVGVLISRRVVEKIGL-PDKE--- 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc------CCC-----ceEEEEEeHHHHHHhCC-CChh---
Confidence 5789999999999999888888887765 333344333321 111 35678999999988743 2211
Q ss_pred cccCCcchHHHHHHHHHhCCceecCC
Q 022666 252 YAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
+ ..+++|..+..=+.+.|-.+ ..|
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i-~~~ 166 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI-YVP 166 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE-Eec
Confidence 1 24568999988888888776 444
No 24
>PLN03181 glycosyltransferase; Provisional
Probab=91.32 E-value=5.8 Score=39.31 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecC
Q 022666 152 LRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS 211 (294)
Q Consensus 152 ~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~ 211 (294)
.+..|.+..+++.+...+ |+++||..+|.|+++-=.++.--|.+|+.-.-+..|.+.
T Consensus 179 ~p~~WaKipalRaAM~a~---PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~ 235 (453)
T PLN03181 179 MNSYWAKLPVVRAAMLAH---PEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPK 235 (453)
T ss_pred CchhhhHHHHHHHHHHHC---CCceEEEEecCCceeecCCCCCCHhhcCCccccccCCcc
Confidence 346788888888866544 999999999999987522222124556433233334443
No 25
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.11 E-value=8.2 Score=37.13 Aligned_cols=176 Identities=17% Similarity=0.098 Sum_probs=102.1
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHhcCCCC--eEEEEecCCCCC----CCCCCCCC-CceeecCCCCCccccCCCCchh
Q 022666 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPNST--RALTFLDRAADS----SSAGDPSL-PRIVISADTSKFPFTFPKGLRS 154 (294)
Q Consensus 82 ~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~--~~~vfsD~~~~~----~~~~~~~l-p~v~i~~d~~~~~y~~~~g~~~ 154 (294)
...|-+.|.+-.+..+.-...++.-.+..-+ ++.++.|..+++ ..+..... |.+.+.... ....|+..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPE-----KKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEecc-----ccCccchH
Confidence 4677777777766543433445544444333 556666644332 11122222 344443100 01123322
Q ss_pred HHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCe-EEeecC-------CCC-c----------
Q 022666 155 AVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWF-YVGSNS-------EGY-E---------- 215 (294)
Q Consensus 155 a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~-yiG~~~-------e~~-~---------- 215 (294)
+ +...+. . .+.+++++.|.|+....+-|.+++..++...-. +.|.+. +.. .
T Consensus 128 a------l~~~l~--~--~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (439)
T COG1215 128 A------LNNGLK--R--AKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSA 197 (439)
T ss_pred H------HHHHHh--h--cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhh
Confidence 2 222221 1 459999999999999999999999988654333 556541 010 0
Q ss_pred ------ccccccccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCC
Q 022666 216 ------QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGF 279 (294)
Q Consensus 216 ------~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~f 279 (294)
.....|......|++.++-+++++++..... ....||..++.-+...|-.+...+.-
T Consensus 198 ~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~-------~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 198 FYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWLE-------DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCCCC-------CceeccHHHHHHHHHCCCeEEEeecc
Confidence 0022233456778999999999999874322 23459999999998888776655544
No 26
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.05 E-value=0.44 Score=41.39 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC-eEEeec-C----CCC---cc----------------ccccccccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSN-S----EGY---EQ----------------NAKHSFGMAFG 227 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p-~yiG~~-~----e~~---~~----------------~~~~g~~~a~G 227 (294)
.+.+|++++|+|+++..+.|.++++.+..+.. -.++.. . ... .. ....+. ....
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGA-AFCC 161 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCC-ceec
Confidence 46899999999999999988888887754222 223221 1 000 00 000111 1234
Q ss_pred CccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 228 GaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
|+|.++++++++++... ++ ..+.+|..++.=+...|..+...|
T Consensus 162 g~~~~~r~~~~~~ig~~-~~------~~~~eD~~l~~r~~~~g~~i~~~~ 204 (234)
T cd06421 162 GSGAVVRREALDEIGGF-PT------DSVTEDLATSLRLHAKGWRSVYVP 204 (234)
T ss_pred CceeeEeHHHHHHhCCC-Cc------cceeccHHHHHHHHHcCceEEEec
Confidence 78999999999987643 21 234689999988877777655433
No 27
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=90.45 E-value=0.81 Score=38.96 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=60.5
Q ss_pred EEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecC----CCC-------c--c--------cccccccccccCcccccc
Q 022666 177 WFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS----EGY-------E--Q--------NAKHSFGMAFGGGGFAIS 234 (294)
Q Consensus 177 Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~----e~~-------~--~--------~~~~g~~~a~GGaG~vlS 234 (294)
|++++|+||-+..+-|.+++..++ |+-...-|... ++. . . ....|......|+|.+++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r 80 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFR 80 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeee
Confidence 899999999999999998887776 22222222211 110 0 0 011222334568999999
Q ss_pred HHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 235 HSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 235 r~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+++++++..-.+ ....+||..++.=+.+.|-.+...|.
T Consensus 81 ~~~l~~vg~~~~------~~~~~ED~~l~~~l~~~G~~~~~~~~ 118 (193)
T PF13632_consen 81 REALREVGGFDD------PFSIGEDMDLGFRLRRAGYRIVYVPD 118 (193)
T ss_pred HHHHHHhCcccc------cccccchHHHHHHHHHCCCEEEEecc
Confidence 999998753210 12445999999888888877655443
No 28
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=89.93 E-value=1.1 Score=38.74 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHH---HHHHHHccCCCCCCeEEeecCC-----------------
Q 022666 153 RSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVD---NLVKTLSKYDDDRWFYVGSNSE----------------- 212 (294)
Q Consensus 153 ~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~---nL~~~L~~yd~~~p~yiG~~~e----------------- 212 (294)
-|+..+..+.+.+.+ .+.++.++.+||.++..+ .|..+++..+...-+.+|....
T Consensus 69 GC~lSH~~~w~~~v~-----~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 143 (200)
T PF01755_consen 69 GCALSHIKAWQRIVD-----SGLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLSTFL 143 (200)
T ss_pred eehhhHHHHHHHHHH-----cCCCeEEEEeccccccccHHHHHHHHHhhcccccchhhccccccccccccccceeeeehh
Confidence 356666666666652 568999999999998833 3333333322222233322110
Q ss_pred -CC-cc-ccc----------ccccccccCccccccHHHHHHHHhhh
Q 022666 213 -GY-EQ-NAK----------HSFGMAFGGGGFAISHSLARVLAGAL 245 (294)
Q Consensus 213 -~~-~~-~~~----------~g~~~a~GGaG~vlSr~ll~~L~~~~ 245 (294)
.. .. ... ....+..|.+||++|+..+++|.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 144 SRSKRYKRKPIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred hhhhhcccCcccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence 00 00 000 01124567789999999999999863
No 29
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=89.29 E-value=1.2 Score=38.98 Aligned_cols=98 Identities=16% Similarity=0.051 Sum_probs=59.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCC------CC-c--c----c----------ccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSE------GY-E--Q----N----------AKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e------~~-~--~----~----------~~~g~~~a~GGa 229 (294)
.+.+|++++|+|+.+..+-|.+++..+...+--.++.... .. . + . ...+..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 5789999999999999988888665553333223322110 00 0 0 0 000111123466
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
+.++.+++++++... +. ..+.+|..+...+...|.++...|
T Consensus 166 ~~~~rr~~~~~vgg~-~~------~~~~ED~~l~~rl~~~G~~~~~~~ 206 (232)
T cd06437 166 AGVWRKECIEDAGGW-NH------DTLTEDLDLSYRAQLKGWKFVYLD 206 (232)
T ss_pred hhhhhHHHHHHhCCC-CC------CcchhhHHHHHHHHHCCCeEEEec
Confidence 678889988886532 22 124599999999988887765544
No 30
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=88.90 E-value=1.4 Score=40.21 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=54.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCC--CCeEEeecC-C-C----Ccc-------------cccccc--cccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDD--RWFYVGSNS-E-G----YEQ-------------NAKHSF--GMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~--~p~yiG~~~-e-~----~~~-------------~~~~g~--~~a~GGa 229 (294)
.+.+|++++|||+.+..+.|.+++..++.. .-..+|... . . ... ...... .....++
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 151 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISS 151 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcC
Confidence 478999999999999987777777655432 223333221 0 0 000 000000 0112357
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
|.++++++++++.. +++- +. ...+|..+..=+.+.|..+...|
T Consensus 152 g~li~~~~~~~iG~-fde~---~f-i~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 152 GCLITREVYQRLGM-MDEE---LF-IDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred cceeeHHHHHHhCC-ccHh---hc-ccchHHHHHHHHHHCCCEEEEeC
Confidence 78999999998854 2221 11 22367666444455676654433
No 31
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=88.84 E-value=0.76 Score=40.80 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=63.6
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCC-CC-eEEeecCCCCc--c-------------------c--cccccccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDD-RW-FYVGSNSEGYE--Q-------------------N--AKHSFGMAFG 227 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~-~p-~yiG~~~e~~~--~-------------------~--~~~g~~~a~G 227 (294)
...+|++++|+|+.+.++.|.+++..+... .. .++|....... . . ...+...+.+
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLG 162 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 356999999999999999998888877432 22 34433210000 0 0 0112223457
Q ss_pred CccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 228 GaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
|++.++++++++++... +. ..+.+|..++.=+...|..+...+.
T Consensus 163 g~~~~~rr~~~~~vgg~-~~------~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 163 GTSNHFRTDVLRELGGW-DP------FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred CchHHhhHHHHHHcCCC-Cc------ccchhhHHHHHHHHHCCceEEEecc
Confidence 88999999999987553 11 1245899988877778877766554
No 32
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=88.25 E-value=0.97 Score=36.85 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccc
Q 022666 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAI 233 (294)
Q Consensus 154 ~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vl 233 (294)
|+..+..+.+++.+ .+.+|.++.|||..+..+ |.+||++
T Consensus 67 C~lSH~~~w~~~~~-----~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~v 105 (128)
T cd06532 67 CFLSHYKLWQKIVE-----SNLEYALILEDDAILDPD------------------------------------GTAGYLV 105 (128)
T ss_pred HHHHHHHHHHHHHH-----cCCCeEEEEccCcEECCC------------------------------------CceEEEe
Confidence 55555566666553 567999999999998876 6689999
Q ss_pred cHHHHHHHHhhh
Q 022666 234 SHSLARVLAGAL 245 (294)
Q Consensus 234 Sr~ll~~L~~~~ 245 (294)
|+.++++|....
T Consensus 106 s~~~A~~ll~~~ 117 (128)
T cd06532 106 SRKGAKKLLAAL 117 (128)
T ss_pred CHHHHHHHHHhC
Confidence 999999998864
No 33
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=87.93 E-value=4.1 Score=35.06 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=64.8
Q ss_pred CccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecCCCCcc-----c---------------ccccccccc-cCccc
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNSEGYEQ-----N---------------AKHSFGMAF-GGGGF 231 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~-yd~~~p~yiG~~~e~~~~-----~---------------~~~g~~~a~-GGaG~ 231 (294)
..+|++++|+|..+.++.+.+++.. .+....+.+|........ . ...+..+.. ..+..
T Consensus 82 ~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~ 161 (211)
T cd04188 82 RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFK 161 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCce
Confidence 4599999999999999999888887 455667888876421110 0 000111111 22447
Q ss_pred cccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCC
Q 022666 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGF 279 (294)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~f 279 (294)
++++++++++..... ...|..|..+..-+.+.|.++...|--
T Consensus 162 ~~~r~~~~~~~~~~~------~~~~~~d~el~~r~~~~g~~~~~vpi~ 203 (211)
T cd04188 162 LFTRDAARRLFPRLH------LERWAFDVELLVLARRLGYPIEEVPVR 203 (211)
T ss_pred eEcHHHHHHHHhhhh------ccceEeeHHHHHHHHHcCCeEEEcCcc
Confidence 899999988764311 134557888877777888887777743
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.86 E-value=2.2 Score=36.61 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=57.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCCCC-c------c-------------cccccccccccCccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGY-E------Q-------------NAKHSFGMAFGGGGF 231 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~e~~-~------~-------------~~~~g~~~a~GGaG~ 231 (294)
...+|++++|+|+.+..+-|.+++..+. +....+.|...... . . ....+..+...|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 5689999999999998888888887554 34455666542110 0 0 012223334457889
Q ss_pred cccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCC
Q 022666 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGV 271 (294)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV 271 (294)
++++++++++....+. .....+|..+..-+...|-
T Consensus 161 ~~rr~~~~~~ggf~~~-----~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGFEGN-----DHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCCccc-----cccccCCHHHHHHHHHhCC
Confidence 9999999997653211 1223467776655544454
No 35
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=86.98 E-value=0.86 Score=38.59 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=46.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCC----CCc----c-------c-------ccccccccccCcc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSE----GYE----Q-------N-------AKHSFGMAFGGGG 230 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e----~~~----~-------~-------~~~g~~~a~GGaG 230 (294)
.+.+|+++.|.|+.+.++-|.+++..+........|.... ... . + ..++......|+|
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 159 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLGGTG 159 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecCch
Confidence 5799999999999999999988888876555565565321 100 0 0 0122233457888
Q ss_pred ccccHHHHHH
Q 022666 231 FAISHSLARV 240 (294)
Q Consensus 231 ~vlSr~ll~~ 240 (294)
++++++++++
T Consensus 160 ~~~rr~~l~~ 169 (183)
T cd06438 160 MCFPWAVLRQ 169 (183)
T ss_pred hhhHHHHHHh
Confidence 9999999888
No 36
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=86.65 E-value=1.2 Score=37.71 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC--CCCCeEEeecCC---C-C--c--ccc-------ccc-ccccccCcccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSE---G-Y--E--QNA-------KHS-FGMAFGGGGFAIS 234 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd--~~~p~yiG~~~e---~-~--~--~~~-------~~g-~~~a~GGaG~vlS 234 (294)
.+.+|++++|+|.++.++.|.+++..+. ++-.++.|.... . . . ... .+. ......|+++++.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMFR 158 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccCCCCCChHHhhh
Confidence 4689999999999999888888887653 333344443211 0 0 0 000 000 0112345667787
Q ss_pred HHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 235 HSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 235 r~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
+++++++... +. ..+.+|..+...+...|-++...|
T Consensus 159 r~~~~~~g~~-~~------~~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 159 KSKVLAVGGY-QD------LPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred HHHHHHcCCc-CC------CCCchHHHHHHHHHHcCCceeccc
Confidence 7777765332 11 145689999999887776655443
No 37
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=86.39 E-value=31 Score=32.82 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC----CCCCCeEEeecCCCC------cc---------------ccccccccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY----DDDRWFYVGSNSEGY------EQ---------------NAKHSFGMAFG 227 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y----d~~~p~yiG~~~e~~------~~---------------~~~~g~~~a~G 227 (294)
...+|++++|.|+...++.+.+++... ++.-.+.+|...... .. +...|..+...
T Consensus 161 a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~ 240 (333)
T PTZ00260 161 SRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDT 240 (333)
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 356999999999998877766666544 344568889864210 00 00112233344
Q ss_pred Cccc-cccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 228 GGGF-AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 228 GaG~-vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
..|+ ++++.+++.+.+.. . ...|.-|.++-..+...|.++...|-
T Consensus 241 ~~Gfk~~~r~~~~~i~~~~--~----~~~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 241 QCGFKLFTRETARIIFPSL--H----LERWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CCCeEEEeHHHHHHHhhhc--c----ccCccchHHHHHHHHHcCCCEEEEce
Confidence 5564 88999999875431 1 12344577777667677877665553
No 38
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=85.53 E-value=1.5 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=18.8
Q ss_pred CCccEEEEEcCCccccHHH----HHHHH
Q 022666 173 AGVRWFVFGDDDTVFFVDN----LVKTL 196 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~n----L~~~L 196 (294)
.+.+|.+++|-|-|+.++. |.++|
T Consensus 70 ~~~dWvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 70 FDADWVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred CCCCEEEEEeeeEEEecCCCCCCHHHhC
Confidence 5799999999999998543 55543
No 39
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=85.12 E-value=1.6 Score=37.44 Aligned_cols=67 Identities=15% Similarity=0.010 Sum_probs=42.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecC---CCCc-----c------------c--ccccccccccCcc
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS---EGYE-----Q------------N--AKHSFGMAFGGGG 230 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~---e~~~-----~------------~--~~~g~~~a~GGaG 230 (294)
+.+|++++|.|+.+.++.|.+++..+. |.-...-|... .... + . ...| ....||.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~ 167 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG 167 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence 458999999999999988888666554 32122222211 1000 0 0 1123 23569999
Q ss_pred ccccHHHHHHH
Q 022666 231 FAISHSLARVL 241 (294)
Q Consensus 231 ~vlSr~ll~~L 241 (294)
.++++++++++
T Consensus 168 ~~~r~~~l~~v 178 (191)
T cd06436 168 QFMRLSALDGL 178 (191)
T ss_pred EEEeHHHHHHh
Confidence 99999999998
No 40
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=84.74 E-value=5.2 Score=34.36 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=56.2
Q ss_pred CccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecCCCCc--c----c---------------ccccccccccCccc
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNSEGYE--Q----N---------------AKHSFGMAFGGGGF 231 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~-yd~~~p~yiG~~~e~~~--~----~---------------~~~g~~~a~GGaG~ 231 (294)
..+|++++|+|..+.++.|..++.. .++...+..|....... . . ...+.. ...|+.+
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVS-DPTSGFR 156 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCC-CCCCccc
Confidence 3599999999999998888888886 45555666675431100 0 0 011111 2234557
Q ss_pred cccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
++++++++++....+ ...+..|..+..-+.+.|..+...|
T Consensus 157 ~~~r~~~~~ig~~~~------~~~~~~~~~l~~~~~~~g~~i~~~p 196 (224)
T cd06442 157 AYRREVLEKLIDSLV------SKGYKFQLELLVRARRLGYRIVEVP 196 (224)
T ss_pred hhhHHHHHHHhhhcc------CCCcEEeHHHHHHHHHcCCeEEEeC
Confidence 899999999872111 1233345544444446676655444
No 41
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.47 E-value=4.5 Score=34.29 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecC----CC-C--cc--ccccc-----------ccccccCccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNS----EG-Y--EQ--NAKHS-----------FGMAFGGGGF 231 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~-yd~~~p~yiG~~~----e~-~--~~--~~~~g-----------~~~a~GGaG~ 231 (294)
.+.+|+++.|+|..+.++.|.+++.. .......+++... +. . .. ..... ......|+++
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTM 157 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCcee
Confidence 57999999999999988888888876 3333344444321 10 0 00 00000 0123467889
Q ss_pred cccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhC
Q 022666 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELG 270 (294)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lG 270 (294)
++.+++++++....+. ..+.+|..+...+...|
T Consensus 158 ~~r~~~~~~~~~~~~~------~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 158 AFNRELLELALPFPDA------DVIMHDWWLALLASAFG 190 (214)
T ss_pred eEEHHHHHhhcccccc------ccccchHHHHHHHHHcC
Confidence 9999999987653211 02447888877776643
No 42
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=84.28 E-value=2.2 Score=37.63 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=54.9
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCC-CeEEeecCCCCcc-------------c------ccccccccccCccccc
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-WFYVGSNSEGYEQ-------------N------AKHSFGMAFGGGGFAI 233 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~-p~yiG~~~e~~~~-------------~------~~~g~~~a~GGaG~vl 233 (294)
..+|++++|+|+.+..+-|.++++.+...+ .+..|........ . ...+..+...|+++++
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAI 188 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHh
Confidence 459999999999999888888888875333 3444443210000 0 0011112333444556
Q ss_pred cHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 234 SHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 234 Sr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
.+.+++ .++ .....+|..++.=+...|..+...|.
T Consensus 189 rr~~~~----~~~------~~~~~eD~~l~~~~~~~G~~~~~~~~ 223 (251)
T cd06439 189 RRELFR----PLP------ADTINDDFVLPLRIARQGYRVVYEPD 223 (251)
T ss_pred HHHHhc----CCC------cccchhHHHHHHHHHHcCCeEEeccc
Confidence 665554 111 12345898887777778877766664
No 43
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=84.08 E-value=4.1 Score=33.79 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=58.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHhhhhHhhhhc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRY 252 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~ 252 (294)
...+|+++.|+|+.+..+-|.+++...++. ....|........ .. .....|+++++.+..+.++.. ++.+.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~-~~---~~~~~~~~~~~~r~~~~~~gg-f~~~~--- 148 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEK-LT---ERGIRGCNMSFWKKDLLAVNG-FDEEF--- 148 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccc-cc---eeEeccceEEEEHHHHHHhCC-CCccc---
Confidence 467999999999999888888888776443 3444554321111 11 123457788898888886443 33321
Q ss_pred ccCCcchHHHHHHHHHhCCce
Q 022666 253 AHLYGSDARVFSCLVELGVGL 273 (294)
Q Consensus 253 ~~~~~~D~~lg~Cl~~lGV~l 273 (294)
.....+|..++.=+.+.|...
T Consensus 149 ~~~~~eD~~l~~r~~~~g~~~ 169 (182)
T cd06420 149 TGWGGEDSELVARLLNSGIKF 169 (182)
T ss_pred ccCCcchHHHHHHHHHcCCcE
Confidence 112248999888888888543
No 44
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=83.96 E-value=3.3 Score=36.00 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=58.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCC---CCc------------cc-------ccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSE---GYE------------QN-------AKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~e---~~~------------~~-------~~~g~~~a~GGa 229 (294)
.+.+|++++|||+.+.++-|.++++.+. ++.....|.... ... .. ......++..|+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVH 159 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccc
Confidence 3689999999999998888888886543 333344343210 000 00 000001234567
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+.++++.+++++.. +++.. ...+|..++.=+.+.|..+...|.
T Consensus 160 ~~~~~~~~~~~~g~-~~~~~-----~~~eD~~l~~r~~~~G~~~~~~~~ 202 (249)
T cd02525 160 HGAYRREVFEKVGG-FDESL-----VRNEDAELNYRLRKAGYKIWLSPD 202 (249)
T ss_pred cceEEHHHHHHhCC-CCccc-----CccchhHHHHHHHHcCcEEEEcCC
Confidence 78889999888643 22221 234788887666667777665554
No 45
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=83.01 E-value=2.7 Score=35.50 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=60.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC--CCCCeEEeecCCC---Cc---------ccccccccccccCccccccHHHH
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSEG---YE---------QNAKHSFGMAFGGGGFAISHSLA 238 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd--~~~p~yiG~~~e~---~~---------~~~~~g~~~a~GGaG~vlSr~ll 238 (294)
...+|++++|+|..+..+.|.++++.++ +.-.+..|..... .. ......+.....|++.+++++++
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 161 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLV 161 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHH
Confidence 4579999999999999888888887762 3333443432210 00 00000112244567778999999
Q ss_pred HHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 239 RVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 239 ~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+++..- ++. + ...+|..++.=+.+.|.++.+.|.
T Consensus 162 ~~iggf-~~~---~--~~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 162 RQVGGF-REG---F--EGAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred HHhCCC-CcC---c--ccchhHHHHHHHHhccceEEEccH
Confidence 887642 221 1 134788777767677877766653
No 46
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=83.01 E-value=41 Score=35.61 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=59.6
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEee----cCCCCc---cc---------ccccc------cccccC
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGS----NSEGYE---QN---------AKHSF------GMAFGG 228 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~----~~e~~~---~~---------~~~g~------~~a~GG 228 (294)
.++++++..|-|+.+..+-|.+++..+ ||+--+.=+. ..++.. +. ...|. .-.+-|
T Consensus 219 ~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G 298 (691)
T PRK05454 219 GAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWG 298 (691)
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCcccccc
Confidence 678999999999999999999999876 4431111110 001100 00 00000 011335
Q ss_pred ccccccHHHHHHHHhh--hhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 229 GGFAISHSLARVLAGA--LDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 229 aG~vlSr~ll~~L~~~--~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
...++.++++.+.... ..+...-..+...+|..++..+...|-.+...|.
T Consensus 299 ~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd 350 (691)
T PRK05454 299 HNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPD 350 (691)
T ss_pred ceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc
Confidence 6667777777654321 1111000123455899999999988877666554
No 47
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=82.14 E-value=8.1 Score=34.31 Aligned_cols=107 Identities=13% Similarity=0.002 Sum_probs=62.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCCCCc------cc---------------ccccccccccCcc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYE------QN---------------AKHSFGMAFGGGG 230 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd-~~~p~yiG~~~e~~~------~~---------------~~~g~~~a~GGaG 230 (294)
...+|++++|+|..+.++.|.+++..+. ..-.+..|....... .. ...+.. ...|+-
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-d~~g~~ 170 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVS-DLTGSF 170 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCC-cCCCcc
Confidence 4578999999999999888888887663 345677776431110 00 000111 123344
Q ss_pred ccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCcccCCCC
Q 022666 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSA 286 (294)
Q Consensus 231 ~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~~g 286 (294)
.++++++++.+....+. ..|..|..+..=+...|.+++..|--+..-..|
T Consensus 171 ~~~rr~~~~~i~~~~~~------~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g 220 (243)
T PLN02726 171 RLYKRSALEDLVSSVVS------KGYVFQMEIIVRASRKGYRIEEVPITFVDRVYG 220 (243)
T ss_pred cceeHHHHHHHHhhccC------CCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCC
Confidence 57899999998653221 234456555333445787777666543333333
No 48
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.96 E-value=8 Score=33.70 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=61.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCc--c-------c--------------ccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE--Q-------N--------------AKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~--~-------~--------------~~~g~~~a~GGa 229 (294)
.+.+|+++.|+|+.+.++.|.+++..+...+--.++....... . . ...+. ....|+
T Consensus 83 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~ 161 (236)
T cd06435 83 PDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNA-IIQHGT 161 (236)
T ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCc-eEEecc
Confidence 4589999999999999999998887775323223332210000 0 0 00000 123467
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+.++++++++++.. ++++ .+.||..++.=+...|-.+...|.
T Consensus 162 ~~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 162 MCLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred eEEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEEEcch
Confidence 78999999999754 3332 245899998888888877655553
No 49
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=79.61 E-value=37 Score=36.80 Aligned_cols=94 Identities=18% Similarity=0.070 Sum_probs=58.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCCCC-----c-------c--c-------------cccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGY-----E-------Q--N-------------AKHSFG 223 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~~~e~~-----~-------~--~-------------~~~g~~ 223 (294)
-+.+|+++.|.|+.+..+-|.+++..+ |++ --.++.+.... . + + ..++-.
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~-VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~ 416 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK-LAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDAT 416 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhCCC-eEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhccc
Confidence 467999999999998888888877654 333 22333221000 0 0 0 001111
Q ss_pred ccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceec
Q 022666 224 MAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (294)
Q Consensus 224 ~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (294)
...|++.++.+++++++....++ ...||..++..+...|-+...
T Consensus 417 -~~~Gs~aviRReaLeeVGGfd~~-------titED~dlslRL~~~Gyrv~y 460 (852)
T PRK11498 417 -FFCGSCAVIRRKPLDEIGGIAVE-------TVTEDAHTSLRLHRRGYTSAY 460 (852)
T ss_pred -ccccceeeeEHHHHHHhcCCCCC-------ccCccHHHHHHHHHcCCEEEE
Confidence 23478899999999997653211 245999999999888866543
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=79.59 E-value=49 Score=35.00 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=60.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC-eEEeecCCCC-----c--------------------c--cccccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNSEGY-----E--------------------Q--NAKHSFGM 224 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p-~yiG~~~e~~-----~--------------------~--~~~~g~~~ 224 (294)
.+.+|+++.|.|+.+..+-|.+++..+..+.. -.++.+.... . + ...++-.
T Consensus 227 a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~- 305 (713)
T TIGR03030 227 TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAA- 305 (713)
T ss_pred cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCe-
Confidence 45799999999999999999998877632222 1222221000 0 0 0011111
Q ss_pred cccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecC
Q 022666 225 AFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPE 276 (294)
Q Consensus 225 a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~ 276 (294)
.+.|++.++.|++++++..... ....||..++..+...|-+....
T Consensus 306 ~~~Gs~~~iRR~al~~iGGf~~-------~~vtED~~l~~rL~~~G~~~~y~ 350 (713)
T TIGR03030 306 FFCGSAAVLRREALDEIGGIAG-------ETVTEDAETALKLHRRGWNSAYL 350 (713)
T ss_pred eecCceeEEEHHHHHHcCCCCC-------CCcCcHHHHHHHHHHcCCeEEEe
Confidence 2357889999999988754321 12359999999998888775443
No 51
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=78.30 E-value=26 Score=32.53 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=60.5
Q ss_pred ccEEEEEcCCccccHHHHHHHHccCCCCC-CeEEeecCCCC-------------------c----cc---cccc---ccc
Q 022666 175 VRWFVFGDDDTVFFVDNLVKTLSKYDDDR-WFYVGSNSEGY-------------------E----QN---AKHS---FGM 224 (294)
Q Consensus 175 ~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~-p~yiG~~~e~~-------------------~----~~---~~~g---~~~ 224 (294)
.+|+++.++||.+..+.|.++++..+... ....|...... . .. .... ...
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVV 164 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhh
Confidence 33999999999998888777776543332 22333221000 0 00 0000 011
Q ss_pred c-ccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCC
Q 022666 225 A-FGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 225 a-~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+ ..|+..++++++++++.. +|+ ++ -.+.+|+.++.=+..+|.++.-.|.
T Consensus 165 ~~~~G~~~li~~~~~~~vG~-~de---~~-F~y~eD~D~~~R~~~~G~~i~~~p~ 214 (305)
T COG1216 165 ASLSGACLLIRREAFEKVGG-FDE---RF-FIYYEDVDLCLRARKAGYKIYYVPD 214 (305)
T ss_pred hhcceeeeEEcHHHHHHhCC-CCc---cc-ceeehHHHHHHHHHHcCCeEEEeec
Confidence 1 457889999999999876 433 12 2455999998888889988765555
No 52
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=78.05 E-value=4.8 Score=34.87 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=52.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC--ccccc-------------cc-----ccccccCcccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY--EQNAK-------------HS-----FGMAFGGGGFA 232 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~--~~~~~-------------~g-----~~~a~GGaG~v 232 (294)
...+|++++|+|+.+.++.|.+++..........+|...... ..... .. ...+....+++
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGPTVIMPTWF 162 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCHHHHHHHHHhhcCCccccccce
Confidence 467999999999999988877766554322334556532110 00000 00 00111223456
Q ss_pred ccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCcee
Q 022666 233 ISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (294)
Q Consensus 233 lSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (294)
+++++.+++... ++. + ..+.+|..+..-+...|-++.
T Consensus 163 ~rr~~~~~~g~f-~~~---~-~~~~eD~~l~~r~~~~g~~i~ 199 (219)
T cd06913 163 CSREWFSHVGPF-DEG---G-KGVPEDLLFFYEHLRKGGGVY 199 (219)
T ss_pred eehhHHhhcCCc-cch---h-ccchhHHHHHHHHHHcCCceE
Confidence 777777766542 221 1 123488888777766665543
No 53
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=78.05 E-value=24 Score=35.85 Aligned_cols=103 Identities=15% Similarity=-0.048 Sum_probs=61.2
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCC-----CeEEeecCCCC-----------ccc-------ccccccccccCc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-----WFYVGSNSEGY-----------EQN-------AKHSFGMAFGGG 229 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~-----p~yiG~~~e~~-----------~~~-------~~~g~~~a~GGa 229 (294)
.+++++++.|-|+.+.++.|..+-..+ ++. |.+.+...... ... ...|-..+.+|.
T Consensus 157 ~~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gt 235 (504)
T PRK14716 157 IRFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGV 235 (504)
T ss_pred CCcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCe
Confidence 357999999999999998887653332 222 22221111000 000 112222345699
Q ss_pred cccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
|+++++++++++....... .-..+...||..+|.-+...|-++...|
T Consensus 236 g~afRR~aLe~l~~~~GG~-~fd~~sLTED~dLglRL~~~G~rv~y~p 282 (504)
T PRK14716 236 GTAFSRRALERLAAERGGQ-PFDSDSLTEDYDIGLRLKRAGFRQIFVR 282 (504)
T ss_pred eEEeEHHHHHHHHhhcCCC-CCCCCCcchHHHHHHHHHHCCCEEEEec
Confidence 9999999999985321110 0001234599999999999888866544
No 54
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.89 E-value=9.9 Score=31.50 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=58.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCC---CCc----c------cccccccccccCccccccHHH
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSE---GYE----Q------NAKHSFGMAFGGGGFAISHSL 237 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~~~e---~~~----~------~~~~g~~~a~GGaG~vlSr~l 237 (294)
-+.+|++++|+|..+..+.+.+++... +++..+..|.... ... . ...........|+|+++++.+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSL 153 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHH
Confidence 357999999999999988888877222 3344455565321 000 0 011111234567889999999
Q ss_pred HHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 238 l~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
++++.. +++= ..+.+|..+..=+.+.|......|
T Consensus 154 ~~~~~~-f~~~-----~~~~~D~~~~~r~~~~g~~~~~~~ 187 (202)
T cd06433 154 FEKYGG-FDES-----YRIAADYDLLLRLLLAGKIFKYLP 187 (202)
T ss_pred HHHhCC-Cchh-----hCchhhHHHHHHHHHcCCceEecc
Confidence 998764 2210 123468776666666776664444
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.40 E-value=8.1 Score=33.06 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=56.4
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeec-C--CCCc---c-------cccccccccccCccccccHHHHHH
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN-S--EGYE---Q-------NAKHSFGMAFGGGGFAISHSLARV 240 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~-~--e~~~---~-------~~~~g~~~a~GGaG~vlSr~ll~~ 240 (294)
..+|++++|+|.++..+.|.+++........ ..|.. . +... . ..........++.|.++++++.++
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEE 150 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHH
Confidence 4799999999999998888887766554433 33332 1 1100 0 011111234567789999998887
Q ss_pred HHhhhhHhhhhcccCCcchHHHHHHHHHhCCce
Q 022666 241 LAGALDSCLMRYAHLYGSDARVFSCLVELGVGL 273 (294)
Q Consensus 241 L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~l 273 (294)
+.. +++. .+.||..+..=+...|-..
T Consensus 151 ~G~-fd~~------~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 151 LGG-FPEL------PLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred hCC-CCcc------ccccHHHHHHHHHhCCCEE
Confidence 754 2322 1558888876666666543
No 56
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=73.27 E-value=31 Score=34.01 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCe--EEeecCCCC---c----------cc-----------------ccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWF--YVGSNSEGY---E----------QN-----------------AKH 220 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~--yiG~~~e~~---~----------~~-----------------~~~ 220 (294)
.+.+|+++.|+|+.+..+.|.++++.+..+..+ .-|...... . .. ...
T Consensus 130 s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~ 209 (439)
T TIGR03111 130 SIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQV 209 (439)
T ss_pred ccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHhhhHHHHhc
Confidence 457899999999999999999998877433222 223221100 0 00 000
Q ss_pred cccccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHH-hCCcee
Q 022666 221 SFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVE-LGVGLT 274 (294)
Q Consensus 221 g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~-lGV~lt 274 (294)
+..++..|++.++.++++++.... +. ...+||..++.=+.. .|-.+.
T Consensus 210 ~~~~~~sGa~~~~Rr~~l~~vggf-~~------~~i~ED~~l~~rl~~~~g~kv~ 257 (439)
T TIGR03111 210 NSLFTLSGAFSAFRRETILKTQLY-NS------ETVGEDTDMTFQIRELLDGKVY 257 (439)
T ss_pred CCeEEEccHHHhhhHHHHHHhCCC-CC------CCcCccHHHHHHHHHhcCCeEE
Confidence 112344677788999988875331 11 234699998875543 454543
No 57
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=72.11 E-value=4.1 Score=37.11 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHhccccCCccEEEEEcCCcccc
Q 022666 153 RSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF 188 (294)
Q Consensus 153 ~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~ 188 (294)
+..|....+++++...+ |+++|++.+|.|+++-
T Consensus 58 ~~~W~K~~~lr~~m~~~---P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKY---PEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHHHTHHHHHHHHHHH----TT-SEEEEE-TTEEE-
T ss_pred ChhhHHHHHHHHHHHhC---CCCCEEEEEcCCeEEE
Confidence 45688778888877655 8999999999999887
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=70.55 E-value=13 Score=28.50 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=44.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCC--CCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHhhhhHhhhh
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd--~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (294)
+.+|++++|+|..+..+.+..++..+- ++..+..| .++++++++.++++....+.-
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~~~~~~~~~~--- 134 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG-------------------PGNLLFRRELLEEIGGFDEAL--- 134 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec-------------------cchheeeHHHHHHhCCcchHh---
Confidence 689999999999998888877643322 22111111 178899999999887643221
Q ss_pred cccCCcchHHHHHHHHH
Q 022666 252 YAHLYGSDARVFSCLVE 268 (294)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~ 268 (294)
..+.+|..+..-+..
T Consensus 135 --~~~~ed~~~~~~~~~ 149 (156)
T cd00761 135 --LSGEEDDDFLLRLLR 149 (156)
T ss_pred --cCCcchHHHHHHHHh
Confidence 122466666554443
No 59
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=67.13 E-value=17 Score=30.19 Aligned_cols=70 Identities=14% Similarity=0.034 Sum_probs=47.2
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcc--------------ccccccc-ccccCccccccHHHH
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ--------------NAKHSFG-MAFGGGGFAISHSLA 238 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~--------------~~~~g~~-~a~GGaG~vlSr~ll 238 (294)
..+|++++|+|.....+-|.++++..+....+.+|........ ....+.. ...+|+.++++++++
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 159 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVV 159 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHH
Confidence 4599999999999888878888877666667777875422110 0000111 134466778999999
Q ss_pred HHHHh
Q 022666 239 RVLAG 243 (294)
Q Consensus 239 ~~L~~ 243 (294)
+.+..
T Consensus 160 ~~i~~ 164 (181)
T cd04187 160 DALLL 164 (181)
T ss_pred HHHHh
Confidence 99775
No 60
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=64.77 E-value=17 Score=33.32 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCC-----CC-----c--------------cc-----------
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSE-----GY-----E--------------QN----------- 217 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e-----~~-----~--------------~~----------- 217 (294)
...+|++++|+|+.+..+-|.++++.+..+....+|.... .. . ..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 4579999999999998777777776543222222221000 00 0 00
Q ss_pred --ccccccccccCccccccHHHHHHHHhhhhHhhhhcccCC-cchHHHHHHHHHhCCceecCC
Q 022666 218 --AKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLY-GSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 218 --~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~-~~D~~lg~Cl~~lGV~lt~~p 277 (294)
.... .....|+.+++++++.+++.. +|+.. ..+ .||+.+..=+...|-.+...|
T Consensus 162 ~~~~~~-~~~~~g~~~~irr~~~~~vGg-fDe~~----~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 162 PTAPIR-SPTMAGGLFAIDREWFLELGG-YDEGM----DIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred CCCCcc-CccccceeeEEEHHHHHHhCC-CCCcc----cccCchhHHHHHHHHHcCCeEEEee
Confidence 0011 123446778999999998854 34321 222 388887666667887765544
No 61
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=61.66 E-value=16 Score=34.61 Aligned_cols=71 Identities=10% Similarity=-0.021 Sum_probs=48.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCc----------c----cccccccccccCccc-cccHHH
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE----------Q----NAKHSFGMAFGGGGF-AISHSL 237 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~----------~----~~~~g~~~a~GGaG~-vlSr~l 237 (294)
.+.+|++++|+|.-..++.+.++++.....-++..|....... . +...|.++...++|+ ++++.+
T Consensus 89 A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~ 168 (325)
T PRK10714 89 VTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHI 168 (325)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHH
Confidence 4679999999999999999998888765444555555432110 0 011233455667787 899999
Q ss_pred HHHHHh
Q 022666 238 ARVLAG 243 (294)
Q Consensus 238 l~~L~~ 243 (294)
++.+..
T Consensus 169 ~~~l~~ 174 (325)
T PRK10714 169 VDAMLH 174 (325)
T ss_pred HHHHHH
Confidence 999864
No 62
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=61.05 E-value=51 Score=29.33 Aligned_cols=151 Identities=13% Similarity=0.171 Sum_probs=69.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHhcCCCCeEEEEecCCCCC--CC---CCCCCCCceeecCCCCCccccCCCCchhHH-HH
Q 022666 85 LLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADS--SS---AGDPSLPRIVISADTSKFPFTFPKGLRSAV-RV 158 (294)
Q Consensus 85 Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~~~~vfsD~~~~~--~~---~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~-r~ 158 (294)
|.|.|.......+.-...++....+ ....+|.+|..... .+ ......+.+.+..+.. .+.+|--+.. ..
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~-~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~----~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHP-DNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRV----DVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--T-TSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS---------TTSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCC-CCEEEEEEcCCCChHHHHHHHHhcccCCceeeccccc----ccccCCccHHHHH
Confidence 4667777664443333445555533 46677778886321 11 1123456665544321 1223333322 22
Q ss_pred HHHHHHHHHhccccCCccEEEEEcCCcccc--HHHHHHHHccCCCCCCeEEeecCCCCc---cccccc-c---------c
Q 022666 159 ARVVKEAVDLTDEKAGVRWFVFGDDDTVFF--VDNLVKTLSKYDDDRWFYVGSNSEGYE---QNAKHS-F---------G 223 (294)
Q Consensus 159 ~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~--~~nL~~~L~~yd~~~p~yiG~~~e~~~---~~~~~g-~---------~ 223 (294)
..+++++.+.. ++.+||+++-.+.|-. .+.+.++|+..+......-+...+... ...... + .
T Consensus 76 l~ll~~al~~~---~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 152 (244)
T PF02485_consen 76 LNLLREALKRD---GDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRT 152 (244)
T ss_dssp HHHHHHHHHH----S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE-
T ss_pred HHHHHHHHhcC---CCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccc
Confidence 36677776543 6899999999999987 677889998753333222222111110 000000 0 1
Q ss_pred ccccCccccccHHHHHHHHh
Q 022666 224 MAFGGGGFAISHSLARVLAG 243 (294)
Q Consensus 224 ~a~GGaG~vlSr~ll~~L~~ 243 (294)
...|..=++|||++++-+..
T Consensus 153 ~~~GSqW~~Ltr~~v~~il~ 172 (244)
T PF02485_consen 153 LYKGSQWFSLTRDFVEYILD 172 (244)
T ss_dssp -EEE-S--EEEHHHHHHHHH
T ss_pred ccccceeeEeeHHHHHHhhh
Confidence 24566678999999999884
No 63
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=60.91 E-value=26 Score=32.07 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeE----EeecCCCCc---c---c-----------ccc-cccccccC
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFY----VGSNSEGYE---Q---N-----------AKH-SFGMAFGG 228 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~y----iG~~~e~~~---~---~-----------~~~-g~~~a~GG 228 (294)
.+.+++++.|.|+.+.++.|.+++..+ ||+--.. .+....... + . ..| +-...+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 173 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWG 173 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccc
Confidence 468999999999999999999999876 4431111 111111100 0 0 000 10113347
Q ss_pred ccccccHHHHHHHHhh--hhHhhhhc-ccCCcchHHHHHHHHHhCCceecCCC
Q 022666 229 GGFAISHSLARVLAGA--LDSCLMRY-AHLYGSDARVFSCLVELGVGLTPEPG 278 (294)
Q Consensus 229 aG~vlSr~ll~~L~~~--~d~C~~~~-~~~~~~D~~lg~Cl~~lGV~lt~~p~ 278 (294)
+++++.++++.++... .+.. ..+ .....+|..++..+...|-.+.-.|.
T Consensus 174 ~~~~~Rr~al~~~~~~~~i~g~-g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 174 HNAIIRVAAFMEHCALPVLPGR-PPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred eEEEEEHHHHHHhcCCccccCC-CCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 8899999988875322 1111 001 12345999999999988877776665
No 64
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=56.52 E-value=5.4 Score=31.74 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=23.4
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCC-CCCeEEeec
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDD-DRWFYVGSN 210 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd~-~~p~yiG~~ 210 (294)
..+|++++|||+++..+.|.+++..++. .....+|..
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3559999999999997666666555443 333555553
No 65
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=53.50 E-value=18 Score=29.80 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=29.9
Q ss_pred CccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecC
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNS 211 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~-yd~~~p~yiG~~~ 211 (294)
..+|++++|+|+.+.++.|.+++.. ......+..|...
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 3499999999999998888888886 4555567777654
No 66
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=46.49 E-value=24 Score=34.40 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=40.7
Q ss_pred CCchhHHHHHHHHHHHHHhccccCCccEEEEEcCCcccc------------HHHHHHHHccCCCCCCeEEeec
Q 022666 150 KGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF------------VDNLVKTLSKYDDDRWFYVGSN 210 (294)
Q Consensus 150 ~g~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~------------~~nL~~~L~~yd~~~p~yiG~~ 210 (294)
.++...|.+.++|+.+...+ |+++|+=.+|-|+.+- .+||...|-+ | +++.+.|..
T Consensus 154 ~e~~~~W~KiP~Ir~tM~ky---P~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~-n-d~~~~~~~n 221 (364)
T KOG4748|consen 154 HELPGVWAKLPAIRQTMLKY---PDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLR-N-DQKSINPLN 221 (364)
T ss_pred ccccchhHHhHHHHHHHHHC---CCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhcc-c-cccccccCC
Confidence 35667899999999988766 9999999999999753 3445544433 1 566666665
No 67
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=46.35 E-value=24 Score=34.95 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.2
Q ss_pred CchhHHHHHHHHHHHHHhccccCCccEEEEEcCCcccc
Q 022666 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF 188 (294)
Q Consensus 151 g~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~ 188 (294)
+.+..|....+++.+...+ |+++||..+|.|+++-
T Consensus 177 ~~p~~WaKlpaLR~aM~~~---PeaEWiWWLDsDALIm 211 (429)
T PLN03182 177 EMAGFWAKLPLLRKLMLAH---PEVEWIWWMDSDALFT 211 (429)
T ss_pred CCCcchhHHHHHHHHHHHC---CCceEEEEecCCceee
Confidence 4456788888888876544 9999999999999984
No 68
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=44.22 E-value=1.2e+02 Score=32.28 Aligned_cols=102 Identities=14% Similarity=-0.009 Sum_probs=61.1
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEee--cCCCC-----------------ccc----ccccccccccCcc
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGS--NSEGY-----------------EQN----AKHSFGMAFGGGG 230 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~--~~e~~-----------------~~~----~~~g~~~a~GGaG 230 (294)
+++-+++.|-|+.+-++.|. +++.+.......-+. +.... ... ...|-..+.+|.|
T Consensus 155 ~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~ 233 (727)
T PRK11234 155 AFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVG 233 (727)
T ss_pred cccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCce
Confidence 56778999999999999997 344433222221110 11100 000 1111235678999
Q ss_pred ccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCC
Q 022666 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (294)
Q Consensus 231 ~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p 277 (294)
.++||.+++.+.+.-+.+ ....+...||..+|.-+...|..+.-.|
T Consensus 234 ~af~Rr~l~al~~~ggg~-~~~~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 234 TCFSRRAVTALLEDGDGI-AFDVQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred EEEecccHHHHHHhcCCC-CcCCCcchHHHHHHHHHHHCCCEEEEcc
Confidence 999988877666643222 1112345599999999999998876544
No 69
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=43.57 E-value=37 Score=26.70 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY 199 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y 199 (294)
.+.+|++++|+|..+..+-|.+++..+
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHh
Confidence 468999999999999888888774443
No 70
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=41.30 E-value=88 Score=28.64 Aligned_cols=98 Identities=24% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHc---cCCCCC-CeEEeecC---CCC-----c-c----------------ccccccc
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLS---KYDDDR-WFYVGSNS---EGY-----E-Q----------------NAKHSFG 223 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~---~yd~~~-p~yiG~~~---e~~-----~-~----------------~~~~g~~ 223 (294)
...+|++++|.|.++.++.+.+++. +.+... ..+.+... +.. . . ...+++
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEF- 165 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhcccccccc-
Confidence 4799999999999999999988888 444332 33332211 100 0 0 011121
Q ss_pred ccccCccccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceec
Q 022666 224 MAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (294)
Q Consensus 224 ~a~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (294)
.+..|+-++++++...++... |+ .+....+||..++.=|...|..+..
T Consensus 166 ~~~~s~~~~i~r~~f~~iGGf-DE---~f~G~G~ED~D~~~RL~~~~~~~~~ 213 (281)
T PF10111_consen 166 IAFASSCFLINREDFLEIGGF-DE---RFRGWGYEDIDFGYRLKKAGYKFKR 213 (281)
T ss_pred ccccceEEEEEHHHHHHhCCC-Cc---cccCCCcchHHHHHHHHHcCCcEec
Confidence 234457789999988887653 22 2322234999998888888877643
No 71
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.78 E-value=1.8e+02 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.0
Q ss_pred cccCccccccHHHHHHHHhhhhH
Q 022666 225 AFGGGGFAISHSLARVLAGALDS 247 (294)
Q Consensus 225 a~GGaG~vlSr~ll~~L~~~~d~ 247 (294)
--|=+||++|+.+++++.+....
T Consensus 154 ~~gt~gYiis~~aAk~fl~~~~~ 176 (255)
T COG3306 154 HLGTAGYIISRKAAKKFLELTES 176 (255)
T ss_pred ccCccceeecHHHHHHHHHHhhh
Confidence 35668999999999999987643
No 72
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=40.21 E-value=77 Score=28.96 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=54.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC--c----c-----cccccccccccCccccccHHHHHHH
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY--E----Q-----NAKHSFGMAFGGGGFAISHSLARVL 241 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~--~----~-----~~~~g~~~a~GGaG~vlSr~ll~~L 241 (294)
-+.+.++.+|||+.+..+.|.......-....-.+|...-.. + . .....|.+...|+ .++.+..+...
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~~~~ySmvLt~a-af~h~~yl~~Y 152 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEWSNEYSMVLTGA-AFYHRYYLELY 152 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SSS--BSEE-TTE-EEEETHHHHHH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCCCCcchhhhhhh-HhhcchHHHHH
Confidence 468999999999999999998877766555666778753211 0 0 1122255666555 44455555444
Q ss_pred Hh--------hhhHhhhhcccCCcchHHHHHHHHH-hCCceecCC
Q 022666 242 AG--------ALDSCLMRYAHLYGSDARVFSCLVE-LGVGLTPEP 277 (294)
Q Consensus 242 ~~--------~~d~C~~~~~~~~~~D~~lg~Cl~~-lGV~lt~~p 277 (294)
.. ..|+. .-+||+.+-.-+.+ +|-+.....
T Consensus 153 ~~~~p~~~r~~Vd~~------~NCEDI~mNflvs~~T~~pPi~v~ 191 (247)
T PF09258_consen 153 THWLPASIREYVDEH------FNCEDIAMNFLVSNLTGKPPIKVT 191 (247)
T ss_dssp HT-S-HHHHHHHHHH------TS-HHHHHHHHHHHHHSS-SE--S
T ss_pred hcCcHHHHHHHHhcc------CCHHHHHHHHHHHHhccCCCCccc
Confidence 32 22221 22489999988876 676654433
No 73
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=33.29 E-value=39 Score=30.81 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=34.0
Q ss_pred chhhhhhccccccccCCCCCc-cc----ccCCCCccchhHHHHHHH-HHHHHHHHHHHHHh
Q 022666 6 NESRRRKRIISFLQNHSSFSP-KI----KMMPSRTLTPSALKNSIL-LFSFLLIIYLFFYY 60 (294)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 60 (294)
|-.|..|||+.+.||..|-.| || -||.-.|. -+-...+ .+-||+|+|++=++
T Consensus 103 ~yeraekrpilsvqrrgspnpfeisdkvemgemasm---ffnkvgln~fyf~iiiylfgdl 160 (319)
T KOG3832|consen 103 GYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASM---FFNKVGLNFFYFAIIIYLFGDL 160 (319)
T ss_pred CchhcccCCcceecccCCCCcceeehhhhHHHHHHH---HHHhhhHHHHHHHHHHHHhhhh
Confidence 456788999999999988666 22 23322221 1223334 67789999998885
No 74
>PLN02893 Cellulose synthase-like protein
Probab=30.97 E-value=2.3e+02 Score=30.38 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCcccc-HHHHHHHHccC-CCC
Q 022666 173 AGVRWFVFGDDDTVFF-VDNLVKTLSKY-DDD 202 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~-~~nL~~~L~~y-d~~ 202 (294)
.+.+.++..|-|.|.+ ++.|++.+--+ |++
T Consensus 297 TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~ 328 (734)
T PLN02893 297 TNAPIILTLDCDMYSNDPQTPLRALCYLLDPS 328 (734)
T ss_pred CCCCEEEEecCCcCCCchhHHHHHHHHhcCCC
Confidence 6799999999999986 77788776433 553
No 75
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=30.47 E-value=4.2e+02 Score=25.49 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHHHHhccccCCccEEEEEcCCccccHH---HHHHHHccCCCCCCe-EEeec-CCCCcc-----cccccccccccCcc
Q 022666 161 VVKEAVDLTDEKAGVRWFVFGDDDTVFFVD---NLVKTLSKYDDDRWF-YVGSN-SEGYEQ-----NAKHSFGMAFGGGG 230 (294)
Q Consensus 161 ~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~---nL~~~L~~yd~~~p~-yiG~~-~e~~~~-----~~~~g~~~a~GGaG 230 (294)
.+..+++. .+++-++++|||-.+.++ -+.+.|..|..++.+ .|+.. ..+... ....-+.-.+.|.|
T Consensus 88 aln~vF~~----~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~~~~~~~~~~lyrs~ff~glG 163 (334)
T cd02514 88 ALTQTFNL----FGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKEHFVDDTPSLLYRTDFFPGLG 163 (334)
T ss_pred HHHHHHHh----cCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcccccCCCcceEEEecCCCchH
Confidence 55555532 369999999999999877 566677777555544 33332 211111 00000123567899
Q ss_pred ccccHHHHHHH
Q 022666 231 FAISHSLARVL 241 (294)
Q Consensus 231 ~vlSr~ll~~L 241 (294)
+++.+.+-+.+
T Consensus 164 Wml~r~~W~e~ 174 (334)
T cd02514 164 WMLTRKLWKEL 174 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999888
No 76
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=28.79 E-value=35 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=18.6
Q ss_pred ccccccccccCcccccc------HHHHHHHH
Q 022666 218 AKHSFGMAFGGGGFAIS------HSLARVLA 242 (294)
Q Consensus 218 ~~~g~~~a~GGaG~vlS------r~ll~~L~ 242 (294)
...|| |+.|-||++.. |.++++|.
T Consensus 37 ~mdGY-y~agngG~i~Nfl~~~eR~~v~kmY 66 (80)
T PF12433_consen 37 GMDGY-YAAGNGGWIDNFLKEKERKLVSKMY 66 (80)
T ss_pred CCCce-EEcCCCceeechhhhHHHHHHHHHH
Confidence 46687 89999999988 66666654
No 77
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=28.34 E-value=51 Score=29.34 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=61.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC--eEEeecC---C--CCc---c--------------cccccccccccC
Q 022666 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW--FYVGSNS---E--GYE---Q--------------NAKHSFGMAFGG 228 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p--~yiG~~~---e--~~~---~--------------~~~~g~~~a~GG 228 (294)
.+.+|++++|.||.+..+.|.+++..++.+.. ..-|... . ... + ....|...+..|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 57899999999999999988888877643222 2333321 0 000 0 012233445668
Q ss_pred ccccccHHHHHHHHhhhhH--h-------hhh----cccCCcchHHHHHHHHHhCCceec
Q 022666 229 GGFAISHSLARVLAGALDS--C-------LMR----YAHLYGSDARVFSCLVELGVGLTP 275 (294)
Q Consensus 229 aG~vlSr~ll~~L~~~~d~--C-------~~~----~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (294)
++.++.+++++........ | ... .....+||..++.-+...|-....
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 8889999988876332110 0 000 011346899999888777766544
No 78
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=25.05 E-value=8.6e+02 Score=25.97 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=59.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeE----EeecCCCC---------------c--cc--ccccccccccCcc
Q 022666 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFY----VGSNSEGY---------------E--QN--AKHSFGMAFGGGG 230 (294)
Q Consensus 174 ~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~y----iG~~~e~~---------------~--~~--~~~g~~~a~GGaG 230 (294)
.++=+++.|-|..+-++.|..+ +.+.++.... +|...... . .. ..-|-..+.||.|
T Consensus 163 ~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~ 241 (703)
T PRK15489 163 EFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPSAGVG 241 (703)
T ss_pred ccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeeccCCCccccHHHHHHHHHHHHHhhhHHHHHHHcCCceeccCcc
Confidence 3455899999999999998765 5544443332 22211100 0 00 1112245789999
Q ss_pred ccccHHHHHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCcee
Q 022666 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (294)
Q Consensus 231 ~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (294)
.++++.+++.+.+.-.... .......||..+|.=+...|....
T Consensus 242 ~~frr~aL~~l~~~gg~~~-~n~~sLTED~Dlg~RL~~~G~r~~ 284 (703)
T PRK15489 242 TCFSRRALLALMKERGNQP-FNTSSLTEDYDFSFRLAELGMQEI 284 (703)
T ss_pred eeeeHHHHHHHHHhcCCCC-CCCCCchHhHHHHHHHHHCCCceE
Confidence 9999999998744311000 001233599999999998887754
No 79
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=23.74 E-value=5.4e+02 Score=24.30 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=52.9
Q ss_pred CCccEEEEEcCCcccc---HHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHhhhhH--
Q 022666 173 AGVRWFVFGDDDTVFF---VDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDS-- 247 (294)
Q Consensus 173 ~~~~Wf~~~DDDTyv~---~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~ll~~L~~~~d~-- 247 (294)
+..+||+.++||+..- +..+.+.+.......++|+-... .|-.|-++-.+-+..|+..+..
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~~~W~~LeFs~--------------lG~iGKlf~s~dL~~l~~fl~~fy 233 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSRIKRFVEAWESKDWLYLEFSQ--------------LGFIGKLFRSSDLPRLARFLLMFY 233 (297)
T ss_pred hcCCeEEEecCCeEechhHHHHHHHHHHHhcCCCceEEEeec--------------CcchhheeccccHHHHHHHHHHHh
Confidence 4678999999999876 46667777665554455554322 2445666666666665542210
Q ss_pred -------hhhhcc--cCCcchHHHHHHHHH-hCCceecCCCCccc
Q 022666 248 -------CLMRYA--HLYGSDARVFSCLVE-LGVGLTPEPGFHQN 282 (294)
Q Consensus 248 -------C~~~~~--~~~~~D~~lg~Cl~~-lGV~lt~~p~fhq~ 282 (294)
-...+. ..+..|..--.|... ....++..|.+.||
T Consensus 234 ~~~P~D~Ll~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~psLFqH 278 (297)
T PF04666_consen 234 KDKPIDWLLDHFFWLKVCSPEKDAKHCERQKQKLRIRFRPSLFQH 278 (297)
T ss_pred hcCcHHHHHHHHHHHhccCcccchHHHHHhhhcceeeeCccceee
Confidence 000000 011123334556654 57777777764443
No 80
>PHA02132 hypothetical protein
Probab=23.08 E-value=1.3e+02 Score=22.48 Aligned_cols=39 Identities=33% Similarity=0.294 Sum_probs=23.8
Q ss_pred hhhhccccccccCCCCCcccccCCCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 022666 9 RRRKRIISFLQNHSSFSPKIKMMPSRTLTPSALKNSILLFSFLLIIYLFFYY 60 (294)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (294)
-|++|||+- .+++||++-++..++--.-.-+.+|++|-+
T Consensus 34 wr~~~pdsk-------------~pa~sl~~vqiyg~ia~awlp~~~~l~~kl 72 (86)
T PHA02132 34 WRQKRPDSK-------------MPARSLCAVQVYGMIAGAWLPLAIYLVCKL 72 (86)
T ss_pred HHcCCCCcc-------------CchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 366778763 256778888877766533333335776654
No 81
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=21.18 E-value=2.5e+02 Score=27.01 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=42.1
Q ss_pred ccCCccEEEEEcCCcccc-HHHHHHHHccCCCCC-------CeEEeecCCCC-ccc-------ccccccccccCcccccc
Q 022666 171 EKAGVRWFVFGDDDTVFF-VDNLVKTLSKYDDDR-------WFYVGSNSEGY-EQN-------AKHSFGMAFGGGGFAIS 234 (294)
Q Consensus 171 ~~~~~~Wf~~~DDDTyv~-~~nL~~~L~~yd~~~-------p~yiG~~~e~~-~~~-------~~~g~~~a~GGaG~vlS 234 (294)
..++.++++.+|||+.+. +..+...+...-.+. ..|+|...... .+. ..-|| ...=++|++.
T Consensus 113 k~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~n~idilQLre~~~~~~~~~~~~~~~~~~~~~Y~ggy--dvSLsAYIIr 190 (323)
T PHA02688 113 KDKEDEYIVVVEDDNTLRDITTLHPIIKAMKEKNIDILQLRETLHNNNVRTLLNQEGNPALYSYTGGY--DVSLSAYIIR 190 (323)
T ss_pred cccCCCeEEEEcCCCcccccHHHHHHHHHHHhcCeEEEEeehhhhCCcccccccCCCCcceEEecCCc--ceeeEEEEEe
Confidence 357799999999999998 444444333221121 23333322110 000 12233 3333579999
Q ss_pred HHHHHHHHhhhh
Q 022666 235 HSLARVLAGALD 246 (294)
Q Consensus 235 r~ll~~L~~~~d 246 (294)
.+.+++|....-
T Consensus 191 ~~~a~kl~~~~i 202 (323)
T PHA02688 191 VSTAKKLYDEII 202 (323)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 82
>PF14071 YlbD_coat: Putative coat protein
Probab=20.63 E-value=17 Score=30.11 Aligned_cols=17 Identities=24% Similarity=0.761 Sum_probs=13.4
Q ss_pred ccEEEEEcCCccccHHH
Q 022666 175 VRWFVFGDDDTVFFVDN 191 (294)
Q Consensus 175 ~~Wf~~~DDDTyv~~~n 191 (294)
-+||++++||-++....
T Consensus 29 EeW~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 29 EEWYLLGEDDPIWDPYK 45 (124)
T ss_pred HHHHHhCCCcchHHHhh
Confidence 37999999999776544
Done!