Query 022667
Match_columns 294
No_of_seqs 133 out of 255
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3073 Protein required for 1 100.0 2.5E-82 5.4E-87 566.3 15.9 234 38-294 3-236 (236)
2 PRK04171 ribosome biogenesis p 100.0 1.7E-79 3.6E-84 557.0 18.1 200 88-294 1-222 (222)
3 PF03587 EMG1: EMG1/NEP1 methy 100.0 8.4E-77 1.8E-81 533.3 14.6 196 91-288 1-202 (202)
4 COG1756 Mra1 Uncharacterized c 100.0 5.4E-70 1.2E-74 491.5 17.4 202 88-294 2-223 (223)
5 PF02590 SPOUT_MTase: Predicte 95.8 0.0068 1.5E-07 53.0 2.9 81 210-293 60-148 (155)
6 PRK00103 rRNA large subunit me 94.2 0.064 1.4E-06 47.1 4.4 76 213-291 63-146 (157)
7 PRK02135 hypothetical protein; 93.9 1.3 2.7E-05 40.8 12.2 152 127-288 25-195 (201)
8 PF04013 Methyltrn_RNA_2: Puta 93.9 0.34 7.4E-06 44.4 8.5 155 123-287 20-194 (199)
9 TIGR00246 tRNA_RlmH_YbeA rRNA 93.1 0.25 5.3E-06 43.3 6.1 74 217-293 65-145 (153)
10 COG1576 Uncharacterized conser 92.7 0.18 3.8E-06 44.6 4.6 81 210-293 60-147 (155)
11 COG1901 Uncharacterized conser 90.8 1.9 4.1E-05 39.5 9.1 149 127-286 25-191 (197)
12 PRK00026 trmD tRNA (guanine-N( 70.9 6 0.00013 37.5 4.3 58 218-277 82-141 (244)
13 TIGR00088 trmD tRNA (guanine-N 68.9 6.8 0.00015 36.9 4.2 58 218-277 79-138 (233)
14 COG2164 Uncharacterized conser 67.2 8.2 0.00018 32.6 3.9 44 239-293 72-115 (126)
15 PRK14599 trmD tRNA (guanine-N( 66.9 8.2 0.00018 36.1 4.2 76 199-278 58-140 (222)
16 COG0336 TrmD tRNA-(guanine-N1) 66.9 8 0.00017 36.5 4.2 75 198-276 57-138 (240)
17 PRK01037 trmD tRNA (guanine-N( 59.1 14 0.0003 36.9 4.4 59 218-278 78-138 (357)
18 PF01011 PQQ: PQQ enzyme repea 42.9 27 0.00059 22.9 2.6 17 155-171 3-19 (38)
19 PF02202 Tachykinin: Tachykini 38.6 4.4 9.5E-05 21.2 -1.4 8 177-184 4-11 (11)
20 PF03755 YicC_N: YicC-like fam 32.7 40 0.00087 29.2 2.7 42 149-193 16-61 (159)
21 PF13570 PQQ_3: PQQ-like domai 23.0 93 0.002 20.3 2.6 27 142-171 14-40 (40)
22 COG1772 Uncharacterized protei 22.5 1.7E+02 0.0036 26.4 4.7 56 202-257 76-133 (178)
No 1
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-82 Score=566.27 Aligned_cols=234 Identities=59% Similarity=0.954 Sum_probs=220.6
Q ss_pred hhhhhhhhhccccCCccCCCcccccchhhhhhhhhcCCCCCCCCCCCCCCeEEEEEcCCccceeeecCeeeeeCchhhHH
Q 022667 38 NDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSN 117 (294)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~liiVL~~A~LEl~k~gK~~~LLn~d~H~~ 117 (294)
+++...++.++++...++++++- .+.+++++||||+.|+||+.|+| +|+|||||+|.+
T Consensus 3 ~e~~~~~~~~~~~~~k~d~~~~~---------------------l~~~~~~~ivVL~~a~le~~Kvg-~y~ll~~d~h~~ 60 (236)
T KOG3073|consen 3 VESSRKAKKEKADRAKEDNDEEA---------------------LPKTKKRLIVVLEGASLETAKVG-KYQLLNSDDHAN 60 (236)
T ss_pred chhhhhcccccccccccCccccc---------------------ccccCCcEEEEecCCCchhhhhh-heeeeccchhhH
Confidence 45666777777777777776651 11578999999999999999999 999999999999
Q ss_pred HHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCC
Q 022667 118 FLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVG 197 (294)
Q Consensus 118 ~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~ 197 (294)
+++|+++++.++||||+|||||+||||||||||+|| |||||..|+||||||++||||||+||+|||+||||+++|++.+
T Consensus 61 ~lkk~~rdp~d~rpDitHQ~Ll~LlDSPlNkAgkLq-Vyi~T~knvLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~d 139 (236)
T KOG3073|consen 61 FLKKNNRDPADYRPDITHQCLLMLLDSPLNKAGKLQ-VYIHTAKNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAVD 139 (236)
T ss_pred HHHhccCCHHhcCCcHHHHHHHHHhcCcccccceeE-EEEEccCceEEEecccccCCCCHHHHHHHHHHHHHHheEeccC
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEeccccccccCCCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCCCccceEEecCCCccHH
Q 022667 198 KREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAA 277 (294)
Q Consensus 198 ~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~~~~e~iSIS~ypLsAa 277 (294)
+.+.||+|||||+++|||.||++|+|||++++..+.++++..+.++.++||+||||+||+|+.+|+++.+|||+|||||+
T Consensus 140 ~~~kLlkVvKNPVtdHlPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg~~~~ey~de~vsiSnYpLSaa 219 (236)
T KOG3073|consen 140 GTEKLLKVVKNPVTDHLPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHGKISVEYVDEKVSISNYPLSAA 219 (236)
T ss_pred chHHHHHHhcCcccccCCCCccEEeecCCCcccccHHhhccccCCCCCEEEEEecccccccchhhhhhhcccccCcCcHH
Confidence 99999999999999999999999999999888777999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCC
Q 022667 278 RCIARICEALEDKWNLL 294 (294)
Q Consensus 278 ~vcsrI~~a~E~~wgI~ 294 (294)
.||+|||++||+.|||+
T Consensus 220 ~~CsKi~~~~Ee~wgIi 236 (236)
T KOG3073|consen 220 LCCSKITSAFEEVWGII 236 (236)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999996
No 2
>PRK04171 ribosome biogenesis protein; Provisional
Probab=100.00 E-value=1.7e-79 Score=557.03 Aligned_cols=200 Identities=32% Similarity=0.498 Sum_probs=189.0
Q ss_pred eEEEEEcCCccce---------------eeecCe--eeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcC
Q 022667 88 GVIFVLEKASLEV---------------AKVGKS--YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAG 150 (294)
Q Consensus 88 ~liiVL~~A~LEl---------------~k~gK~--~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG 150 (294)
.+++||.+|+||+ +|+||+ ++|||+|+|+++|++++++++||||||||||||++|||||||+|
T Consensus 1 ~l~lvl~es~LElvP~ei~~hp~v~~~a~rr~K~p~~~LLd~~~H~~~m~kl~~~~~rgRPDIvHq~LL~lldSpLNk~G 80 (222)
T PRK04171 1 MLNLVLAESALELVPREIWNHPAVVKNARRRGKKPEEMLLDSSLHYHAMKKLEDKEKRGRPDIVHISLLVALDSPLNKEG 80 (222)
T ss_pred CeEEEEeccccccCCHHHhcCcHHHhhHHHcCCChhhhccChHHHHHHHHhCccchhccCCCHHHHHHHHHhcChhhhcC
Confidence 3678999999998 567887 66999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCC--CeEEEEeccCc
Q 022667 151 RLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--SRKIGFSYSSE 228 (294)
Q Consensus 151 ~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~--~~~I~LS~~~g 228 (294)
+|+ |||||.+|+||+|||++||||||+||+|||+|||++++|+++ +++||++++|||++|||.+ +++|+|| ++|
T Consensus 81 ~L~-VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~--~~~Llkv~k~~l~~~l~~~~~~~~i~lS-~~g 156 (222)
T PRK04171 81 KLR-VYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPN--GEPLLEIENKSLEELLEEIGPDRIILLS-EKG 156 (222)
T ss_pred CeE-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCC--CcchheeecCcHHHhccccCCCcEEEEC-CCC
Confidence 999 999999999999999999999999999999999999999986 6899999999999999996 8999999 778
Q ss_pred cccchhHHhhhcCCCCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHHHHHHHHhhhcCC
Q 022667 229 KLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARICEALEDKWNLL 294 (294)
Q Consensus 229 k~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI~ 294 (294)
+.+++.+|++ .+.++||+|||||||+|+.+| +++.||||+||||||+||||||++||+.|||+
T Consensus 157 ~~~~~~~~~~---~~~~~~~vIGaf~hG~f~~~~~~~~~~~iSIs~~pLsa~~v~~ri~~a~E~~~gi~ 222 (222)
T PRK04171 157 ELVKPKELGK---ENENIAVGIGGFPHGDFSEKVLELAKKKYSIYGEPLTAWTVVCRVIAAYERLLGLL 222 (222)
T ss_pred cccCHHHHhh---ccCCcEEEEccccCCCcchhhHhhcCeEEEEeCCChHHHHHHHHHHHHHHHHhCcC
Confidence 8999999987 467899999999999999987 77999999999999999999999999999985
No 3
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis. They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.
Probab=100.00 E-value=8.4e-77 Score=533.33 Aligned_cols=196 Identities=48% Similarity=0.750 Sum_probs=166.8
Q ss_pred EEEcCCccceeeecCeeeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCC
Q 022667 91 FVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPH 170 (294)
Q Consensus 91 iVL~~A~LEl~k~gK~~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~~lIeVsP~ 170 (294)
|||++|+||+++.+.+++|||+|+||++|++++++++||||||||||||+||||||||+|+|+ |||||.+|+||+|||+
T Consensus 1 ivL~~a~LE~v~~~~~~~LLd~~~H~~~m~k~~~~~k~~RPDIvH~~LL~lldSpLNk~G~L~-VYIhT~~~~lI~V~p~ 79 (202)
T PF03587_consen 1 IVLEEASLELVPRKPKYQLLDSSDHYNAMKKLPKDEKRGRPDIVHQCLLMLLDSPLNKAGKLQ-VYIHTIDNVLIEVSPQ 79 (202)
T ss_dssp EEEEEES--BEEGSCGCSB--HHHHCGGHTTTTTGGGCS-HHHHHHHHHHHHTSHHHHTT-EE-EEEEETTSEEEEE-TT
T ss_pred CCccCCeeeEecCCCCcCccchHHHHHHHHHcCCChhhcCcchHHHHHHHHhcChHHhCCcEE-EEEEecCCEEEEECCC
Confidence 799999999999988999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCCeEEEEeccCccccchhHHhh-hc-CCCCCeEE
Q 022667 171 VRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVA-SI-SDDDNLVF 248 (294)
Q Consensus 171 ~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~~~~~~~-~l-~~~~~~vf 248 (294)
+||||||+||+|||+|||++++|++++++++||+|++|||++|||.|+++|+|| ..|+.+++.+|++ .+ ..+.+++|
T Consensus 80 ~RiPR~y~rF~gLm~qLL~~~~I~~~~~~~~Llkv~~~~l~~~l~~~~~~i~ls-~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (202)
T PF03587_consen 80 TRIPRNYNRFVGLMEQLLKKGKIPAEESGEPLLKVIKNPLTDLLPPGSRKILLS-EKGEKVDPKELVKEALLAGDEPVVF 158 (202)
T ss_dssp ----SSHHHHHHHHHHHHHHSEEEETTSTCEEEEEECS-HHHHCCCTCEEEEEE-TTSCEE-HHHHCC--TS-TTCCEEE
T ss_pred CcCCcCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEeCCHHHhcCCCCeEEEEc-CCCCcCCHHHHHhhhhccCCCCeEE
Confidence 999999999999999999999999998889999999999999999999999999 5577799999987 33 34678999
Q ss_pred EEccccCCCCCCC--Ccc--ceEEecCCCccHHHHHHHHHHHHH
Q 022667 249 VVGAMAHGKIDCD--YTD--DLIAISGYPLSAARCIARICEALE 288 (294)
Q Consensus 249 vIGaf~hGd~~~~--~~~--e~iSIS~ypLsAa~vcsrI~~a~E 288 (294)
+|||||||+|..+ |.+ +.||||+||||||+||||||++||
T Consensus 159 ~IGaf~~Gdf~~~~~~~~~~~~~sIs~~~Lsa~~v~~ri~~~~E 202 (202)
T PF03587_consen 159 VIGAFPHGDFSEEVDYVEADEEISISDYPLSAWTVCSRICSAFE 202 (202)
T ss_dssp EEE-SSSS-SCCCCCCHSCEEEEESSSS---HHHHHHHHHHHHH
T ss_pred EEeeecCCCCcccccccccceEEEEeCCChHHHHHHHHHHHHhC
Confidence 9999999998765 544 999999999999999999999998
No 4
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.4e-70 Score=491.54 Aligned_cols=202 Identities=36% Similarity=0.569 Sum_probs=187.1
Q ss_pred eEEEEEcCCccce---------------eeecCe--eeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcC
Q 022667 88 GVIFVLEKASLEV---------------AKVGKS--YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAG 150 (294)
Q Consensus 88 ~liiVL~~A~LEl---------------~k~gK~--~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG 150 (294)
++++||.+|+||+ .|+||+ .+|||+++||+||+++..+++||||||+|||||++|||||||+|
T Consensus 2 ~~~~vlae~~le~ip~~i~~hpav~~~akrrgk~p~~~iLd~~~hh~am~~l~~~e~RgRPDI~H~~LL~~lDSplnk~~ 81 (223)
T COG1756 2 RLHLVLAEAELELIPEEIVNHPAVLRDAKRRGKRPEKIILDSSYHHTAMKKLEDRERRGRPDIVHQCLLTLLDSPLNKEG 81 (223)
T ss_pred CcceeehhhhhhhcCHHHhcCHHHHHHHHHhCCCCCcEEEecccCHHHHHHhcChhhcCCCchHHHHHHHHhhccccccc
Confidence 5789999999999 345666 89999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCC-eEEEEeccCcc
Q 022667 151 RLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNS-RKIGFSYSSEK 229 (294)
Q Consensus 151 ~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~-~~I~LS~~~gk 229 (294)
+|+ |||||++|.||+|||.+|+||||+||+|||+|||++++|++++ +++||+++++||+++|+.++ .+|.|| +.|.
T Consensus 82 ~L~-vYIHT~~~~vI~v~p~~R~Prny~RFiGLmeqLlk~~~i~~~~-~e~Ll~v~~~~l~d~l~~~~~~~ill~-e~G~ 158 (223)
T COG1756 82 KLR-VYIHTRNDYVIEVNPETRLPRNYNRFIGLMEQLLKKGRIPSNG-GETLLEVEKNPLTDLLPENNKVTILLH-EKGE 158 (223)
T ss_pred cee-EEEEecCCEEEEECCCccCCCCHHHHHHHHHHHHhcCCcCCCC-CcEeeeeecCcHHHhccccCceEEEEc-CCCC
Confidence 999 9999999999999999999999999999999999999999974 79999999999999999875 789999 6677
Q ss_pred ccchhHHhhhcCCCCCeEEEEccccCCCCCCCC--ccceEEecCCCccHHHHHHHHHHHHHhhhcCC
Q 022667 230 LVKMRNYVASISDDDNLVFVVGAMAHGKIDCDY--TDDLIAISGYPLSAARCIARICEALEDKWNLL 294 (294)
Q Consensus 230 ~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~~--~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI~ 294 (294)
.+.+++|++.+... ++|+|||||||||..++ ..+.||||+||||||+||||||++||.+|||+
T Consensus 159 ~~~p~~~~~~l~~~--i~v~iG~fp~Gdf~~~~~~~~~~~si~~~pL~a~~v~~ki~~~~E~~~g~~ 223 (223)
T COG1756 159 LIPPKELISLLLKG--IAVIIGGFPHGDFREETEFVAEKYSIYDEPLSAWSVCSKIVYAYERALGIL 223 (223)
T ss_pred ccCHHHHHhhhccC--ceEEEeccCCCcchhhhhhhcceeeecCCCccHHHHHHHHHHHHHHHhccC
Confidence 89999999887544 79999999999987664 55899999999999999999999999999985
No 5
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=95.82 E-value=0.0068 Score=53.01 Aligned_cols=81 Identities=15% Similarity=0.341 Sum_probs=47.7
Q ss_pred ccccccCCCeEEEEeccCccccchhHHhhhcCC-----CCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHH
Q 022667 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASISD-----DDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIA 281 (294)
Q Consensus 210 l~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~-----~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcs 281 (294)
|...+++++.+|+|+ ..|+.++-.+|.+.+.. ...++|+||| |+| ++.+. ++..+|+|...++-..+--
T Consensus 60 il~~i~~~~~~i~Ld-~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG-~~G-~~~~~~~~a~~~lSLS~mTfpH~larl 136 (155)
T PF02590_consen 60 ILKKIPPNDYVILLD-ERGKQLSSEEFAKKLERWMNQGKSDIVFIIGG-ADG-LSEEVRKRADEKLSLSKMTFPHQLARL 136 (155)
T ss_dssp HHCTSHTTSEEEEE--TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-B-TTB---HHHHHH-SEEEES-SS---HHHHHH
T ss_pred HHhhccCCCEEEEEc-CCCccCChHHHHHHHHHHHhcCCceEEEEEec-CCC-CCHHHHhhcCceEEEecCCCcHHHHHH
Confidence 344556788999999 77888888787766532 3478999997 566 34333 7889999988887776655
Q ss_pred HHHHHHHhhhcC
Q 022667 282 RICEALEDKWNL 293 (294)
Q Consensus 282 rI~~a~E~~wgI 293 (294)
-++.-+...|-|
T Consensus 137 vL~EQiYRA~tI 148 (155)
T PF02590_consen 137 VLLEQIYRAFTI 148 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 6
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=94.25 E-value=0.064 Score=47.08 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=51.7
Q ss_pred cccCCCeEEEEeccCccccchhHHhhhcCC----C-CCeEEEEccccCCCCCCC---CccceEEecCCCccHHHHHHHHH
Q 022667 213 YLPVNSRKIGFSYSSEKLVKMRNYVASISD----D-DNLVFVVGAMAHGKIDCD---YTDDLIAISGYPLSAARCIARIC 284 (294)
Q Consensus 213 ~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~----~-~~~vfvIGaf~hGd~~~~---~~~e~iSIS~ypLsAa~vcsrI~ 284 (294)
.+++++.+|+|+ +.|+..+-.+|...+.. . ..++|+||| |+|- +.+ -++..+|+|.--++-..+---+|
T Consensus 63 ~l~~~~~~i~LD-e~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG-a~G~-~~~v~~~a~~~lSLS~mTfpH~larlvL~ 139 (157)
T PRK00103 63 ALPKGARVIALD-ERGKQLSSEEFAQELERWRDDGRSDVAFVIGG-ADGL-SPAVKKRADQSLSLSKLTLPHQLVRVLLA 139 (157)
T ss_pred hCCCCCEEEEEc-CCCCcCCHHHHHHHHHHHHhcCCccEEEEEcC-cccc-CHHHHHhcCceEEeccCCCcHHHHHHHHH
Confidence 456677899999 77888887777655532 2 379999997 4563 222 27789999998777766655555
Q ss_pred HHHHhhh
Q 022667 285 EALEDKW 291 (294)
Q Consensus 285 ~a~E~~w 291 (294)
.-+...|
T Consensus 140 EQlYRa~ 146 (157)
T PRK00103 140 EQLYRAW 146 (157)
T ss_pred HHHHHHH
Confidence 4444444
No 7
>PRK02135 hypothetical protein; Provisional
Probab=93.91 E-value=1.3 Score=40.84 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=97.1
Q ss_pred CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecC----CeEEEEcC-CCC-CCCChhHHHHHHHHHHHcCc--cccC-C
Q 022667 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDK----GVLFEVKP-HVR-LPRTYKRFAGIMLQLLQKLS--ITAV-G 197 (294)
Q Consensus 127 k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~----~~lIeVsP-~~R-IPRty~RF~GLM~qLL~k~~--I~~~-~ 197 (294)
..||-||+=.|+.++|=--=.-.--.. ||+.-.+ .+.|.+.. .+| +.-.=....+++..-|.... +... -
T Consensus 25 ~~GR~DilcR~v~sAlflSh~iR~Dv~-v~lvL~g~p~p~~tI~f~G~~lr~l~PDErs~a~~I~kAL~~~~~~~~~~~~ 103 (201)
T PRK02135 25 SAGRLDILCRCVNSAFFLSHDIRRDVR-VHLVLEGTPDPPKTIRFEGSELRRLNPDERSTAALIKKALDASEGMIGEQER 103 (201)
T ss_pred CccchhHHHHHHHHHHHHhcCccCCeE-EEEEEcCCCCCCeEEEEechhcccCCccHHHHHHHHHHHHhccccccccccc
Confidence 489999999999987721111122344 6666555 45555433 332 33344567888888887762 2110 0
Q ss_pred CCcceEEEEeccccccccC---CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCC-------CccceE
Q 022667 198 KREKLLRVIKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCD-------YTDDLI 267 (294)
Q Consensus 198 ~~~~LLkviknpl~~~Lp~---~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~-------~~~e~i 267 (294)
...+=+.|-+.+++++|.. +...+-|+ +.|..+. +. ....+.||+.| -|-.|..+ ...+.|
T Consensus 104 e~~pGi~V~~~~fe~ll~~~~e~~~l~~L~-e~G~~i~--~~----~~~~~~~FvLg--DH~~~~~ee~~~L~~~ga~~i 174 (201)
T PRK02135 104 EVTPGIYVRRRGFEDLLEELAEGKTLYYLH-EDGEDIR--DV----EFPENPVFVLG--DHIGFTEEEENLLKRLGAEKI 174 (201)
T ss_pred ccCCCEEEecCCHHHHHHHHhcCCcEEEEe-CCCCchh--hc----cCCCCCEEEEe--CCCCCCHHHHHHHHHhCCeEE
Confidence 1234488889999998863 57788999 6676432 21 12245589998 45555432 357899
Q ss_pred EecCCCccHHHHHHHHHHHHH
Q 022667 268 AISGYPLSAARCIARICEALE 288 (294)
Q Consensus 268 SIS~ypLsAa~vcsrI~~a~E 288 (294)
||+..+|=|++|+.=|-+.+-
T Consensus 175 SlGP~~l~AshcI~~vhn~LD 195 (201)
T PRK02135 175 SLGPKMLHADHCITLIHNELD 195 (201)
T ss_pred EeCcHHHHHHHHHHHHHHHHh
Confidence 999999999999987776653
No 8
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=93.87 E-value=0.34 Score=44.41 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=85.8
Q ss_pred CCCC-CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEec----CCeEEEEc-CCCCCCCChh-HHHHHHHHHHHcCc-cc
Q 022667 123 NKNP-ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTD----KGVLFEVK-PHVRLPRTYK-RFAGIMLQLLQKLS-IT 194 (294)
Q Consensus 123 ~~~~-k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~----~~~lIeVs-P~~RIPRty~-RF~GLM~qLL~k~~-I~ 194 (294)
++-+ ..||-||+=.||.+++=--=.-.--.. ||+.-. ..+.|.+. ..+|-=.--. -+.+++-..|.... ..
T Consensus 20 ~dlpG~~GRlDiLcR~v~~AlflSh~~R~Dv~-v~lvL~g~pdp~~tI~f~g~~lr~l~pDErs~a~li~kAL~~~~~~~ 98 (199)
T PF04013_consen 20 NDLPGSAGRLDILCRCVNAALFLSHGIRRDVR-VYLVLLGPPDPPRTIRFEGSELRRLNPDERSIAALIKKALEKRGMIG 98 (199)
T ss_dssp CCTTTTTTSHHHHHHHHHHHHBESSSB-TTEE-EEEEEEESSSS-EEEEEETTT--S--SSHHHHHHHHHHHHCHCCTGC
T ss_pred hhCCCcchhHHHHHHHHHHHHHHhcCcccceE-EEEEEecCCCCCEEEEEeccccCCCCccHHHHHHHHHHHHhcCCCCC
Confidence 4444 589999999999987643222222345 666654 45555544 4455422223 35667777887663 11
Q ss_pred cCC-CCcceEEEEeccccccccC--C-CeEEEEeccCccccchhHHhhhcCCCC-CeEEEEccccCCCCC-------CCC
Q 022667 195 AVG-KREKLLRVIKNPVTQYLPV--N-SRKIGFSYSSEKLVKMRNYVASISDDD-NLVFVVGAMAHGKID-------CDY 262 (294)
Q Consensus 195 ~~~-~~~~LLkviknpl~~~Lp~--~-~~~I~LS~~~gk~v~~~~~~~~l~~~~-~~vfvIGaf~hGd~~-------~~~ 262 (294)
... ..++=+.|-+.++++++.. + ...+-|+ +.|+.+ ++.- ... +.|||.| -|-+|. .+.
T Consensus 99 ~~~~e~~pGi~v~~~~fe~ll~~~~~~~~l~~L~-e~G~di--~~~~----~~~~d~~FVLg--DH~g~~~eee~~L~~~ 169 (199)
T PF04013_consen 99 EQWRESTPGIYVRKGGFEDLLEELAEEYPLYYLH-EDGEDI--RDVE----FPGNDPVFVLG--DHIGFTEEEEELLERL 169 (199)
T ss_dssp CSEEEEETTEEEE---HHHHHHHHHCTSEEEEES-TTSEEG--GGS-------S-SEEEEEE---TT-SHHHHHHHHHCT
T ss_pred ceeeecCCCEEEecCCHHHHHHHHhcCCcEEEEc-CCCCcH--hhcc----cCCCCCeEEEe--CCCCCCHHHHHHHHHc
Confidence 000 0123388999999999974 3 5778899 667643 3321 122 6799987 244443 234
Q ss_pred ccceEEecCCCccHHHHHHHHHHHH
Q 022667 263 TDDLIAISGYPLSAARCIARICEAL 287 (294)
Q Consensus 263 ~~e~iSIS~ypLsAa~vcsrI~~a~ 287 (294)
..+.|||+..+|-||+|+.=+-+.+
T Consensus 170 ~a~kiSlGP~~lhAdhcI~ivhn~L 194 (199)
T PF04013_consen 170 GAEKISLGPKSLHADHCITIVHNEL 194 (199)
T ss_dssp TSEEEES-SS---HHHHHHHHHHHH
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHH
Confidence 6889999999999999998776655
No 9
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=93.12 E-value=0.25 Score=43.29 Aligned_cols=74 Identities=12% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCeEEEEeccCccccchhHHhhhcC----CCCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHHHHHHHHh
Q 022667 217 NSRKIGFSYSSEKLVKMRNYVASIS----DDDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIARICEALED 289 (294)
Q Consensus 217 ~~~~I~LS~~~gk~v~~~~~~~~l~----~~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsrI~~a~E~ 289 (294)
++.+|+|+ +.|+.++-.+|.+.+. ....++|+||| |+|- +.+. ++..+|+|..-++-..+--=+|.-+..
T Consensus 65 ~~~~i~LD-e~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG-a~G~-~~~v~~~a~~~lSLS~mTfpH~larlvL~EQiYR 141 (153)
T TIGR00246 65 KAHVVTLD-IPGKPWTTPQLADTLEKWKTDGRDVTLLIGG-PEGL-SPTCKAAAEQSWSLSKLTLPHPLVRVIVAESLYR 141 (153)
T ss_pred CCeEEEEc-CCCCcCCHHHHHHHHHHHhccCCeEEEEEcC-CCcC-CHHHHHhcCceEEeecCCCcHHHHHHHHHHHHHH
Confidence 46789999 7788888778776653 23469999998 4663 2222 778999999888877666555555555
Q ss_pred hhcC
Q 022667 290 KWNL 293 (294)
Q Consensus 290 ~wgI 293 (294)
.|-|
T Consensus 142 A~tI 145 (153)
T TIGR00246 142 AWSI 145 (153)
T ss_pred HHHH
Confidence 5443
No 10
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.18 Score=44.64 Aligned_cols=81 Identities=15% Similarity=0.291 Sum_probs=59.6
Q ss_pred ccccccCCCeEEEEeccCccccchhHHhhhcC----CCCCeEEEEccccCCCCCCCC---ccceEEecCCCccHHHHHHH
Q 022667 210 VTQYLPVNSRKIGFSYSSEKLVKMRNYVASIS----DDDNLVFVVGAMAHGKIDCDY---TDDLIAISGYPLSAARCIAR 282 (294)
Q Consensus 210 l~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~----~~~~~vfvIGaf~hGd~~~~~---~~e~iSIS~ypLsAa~vcsr 282 (294)
+...+++|+.+|+|. ..|+..+-.+|...+. .+.+++|+||| |.|- +... ++..+|+|.-.|+-..+=--
T Consensus 60 il~~i~~~~~vi~Ld-~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG-~~Gl-~~~~~~~a~~~~sls~lT~PHql~rlv 136 (155)
T COG1576 60 ILAAIPKGSYVVLLD-IRGKALSSEEFADFLERLRDDGRDISFLIGG-ADGL-SEAVKARADQVLSLSKLTLPHQLVRLV 136 (155)
T ss_pred HHHhcCCCCeEEEEe-cCCCcCChHHHHHHHHHHHhcCCeEEEEEeC-cccC-CHHHHHHHhhheecccccchhHHHHHH
Confidence 445677789999999 5577787777765553 23579999997 6674 2222 77899999988888877777
Q ss_pred HHHHHHhhhcC
Q 022667 283 ICEALEDKWNL 293 (294)
Q Consensus 283 I~~a~E~~wgI 293 (294)
||.-+...|-|
T Consensus 137 L~EQiYRA~sI 147 (155)
T COG1576 137 LAEQIYRAFSI 147 (155)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 11
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=1.9 Score=39.53 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=91.2
Q ss_pred CCCCCcHHHHHHHHhh-cchhhhcCCccEEEEE--e----cCCeEEE-EcCCCC-CCCChhHHHHHHHHHHHcCccccCC
Q 022667 127 ADYRPDIVHQALLSIL-DSRLTKAGRLQAVYVR--T----DKGVLFE-VKPHVR-LPRTYKRFAGIMLQLLQKLSITAVG 197 (294)
Q Consensus 127 k~gRPDIvHq~LL~LL-DSPLNKaG~L~~VYIh--T----~~~~lIe-VsP~~R-IPRty~RF~GLM~qLL~k~~I~~~~ 197 (294)
..||-||+=.|+-++| -|=-++.. |-|| - ...+.|. .-+.+| +=+.=..|.+++.+-|...-.....
T Consensus 25 ~sGR~DvlcRc~~~alf~sh~~R~d----V~v~lvL~G~p~ppktI~~~g~~~~~~~pdErs~a~~i~kAL~~~~~~~~~ 100 (197)
T COG1901 25 SSGRLDVLCRCVSSALFLSHGIRRD----VVVYLVLLGPPDPPKTIRVEGSELRYLNPDERSLAILIKKALDAELGKEQT 100 (197)
T ss_pred CCcchhHHHHHHhHHHHHhccccCc----eEEEEEEecCCCCCEEEEEEcccccccCcchHHHHHHHHHHHHhhccccce
Confidence 4899999999998544 33222222 4444 1 1233333 345555 4444556889999988872221110
Q ss_pred C-CcceEEEEeccccccccC---CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEc---cccCCC--CCCCCccceEE
Q 022667 198 K-REKLLRVIKNPVTQYLPV---NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVG---AMAHGK--IDCDYTDDLIA 268 (294)
Q Consensus 198 ~-~~~LLkviknpl~~~Lp~---~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIG---af~hGd--~~~~~~~e~iS 268 (294)
. ..+=+.|-+..+++++.. +...|-|+ +.|.- +++. .-..+.||++| ++++++ +-...+...||
T Consensus 101 ~~~~pGi~V~~~~~e~ll~~l~~~~~ly~L~-E~G~D--I~~v----~~~~np~FIlGDH~g~t~e~~k~L~r~~~~~IS 173 (197)
T COG1901 101 REVTPGIYVRNGGFEALLAELAEGRSLYYLH-EDGRD--ISEV----DLIPNPVFILGDHIGLTEEDEKLLERHAAKKIS 173 (197)
T ss_pred eecCCCEEEecCCHHHHHHHHhccCcEEEEc-cCCcc--Hhhc----ccCCCceEEeeCCCCCCHHHHHHHHHhhCceeE
Confidence 0 113388888889988874 35678899 66753 3322 11345699998 344444 22335778899
Q ss_pred ecCCCccHHHHHHHHHHH
Q 022667 269 ISGYPLSAARCIARICEA 286 (294)
Q Consensus 269 IS~ypLsAa~vcsrI~~a 286 (294)
++.-+|-||+|+.-+-+.
T Consensus 174 lGP~~lha~hcit~~h~~ 191 (197)
T COG1901 174 LGPLSLHADHCITLLHNL 191 (197)
T ss_pred eCchHHHHHHHHHHHHHH
Confidence 999999999998765443
No 12
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=70.93 E-value=6 Score=37.49 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=40.6
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHH
Q 022667 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAA 277 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa 277 (294)
.++|.|| ..|+..+ .+.+..+.....++|+-|-+--=| +-+.++++.|||.+|-||.-
T Consensus 82 ~~vi~ls-P~G~~f~-Q~~a~~ls~~~~lillCGrYEGiDeRv~~~~vdeeiSiGDyVLtGG 141 (244)
T PRK00026 82 AKVILLS-PQGKPFT-QADARELAKEEHLILLCGRYEGIDERVIEHYVDEEISIGDYVLTGG 141 (244)
T ss_pred CeEEEEC-CCCCcCC-HHHHHHHhCCCCEEEEeccccChHHHHHhhhCcEEEeeccEEecCc
Confidence 5689999 5677554 345666776677888766543333 33457999999999999853
No 13
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=68.85 E-value=6.8 Score=36.89 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=40.2
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHH
Q 022667 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAA 277 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa 277 (294)
.++|.|| ..|+..+ .+++..+.....++|+-|-.--=| +-+.++++.|||.+|-||.-
T Consensus 79 ~~vi~ls-P~G~~f~-Q~~a~ela~~~~lillCGrYEGiDeRi~~~~vdeeiSIGDyVLtGG 138 (233)
T TIGR00088 79 GTVILLS-PQGRKFD-QAGARELAQNEHLILICGRYEGFDERIIQLEVDEEISIGDFVLTGG 138 (233)
T ss_pred CcEEEEC-CCCCcCC-HHHHHHHhCCCCEEEEeccccCcHHHHHhccCcEEEeeccEEecCc
Confidence 4688899 5677554 455666776777777766443223 33457999999999999853
No 14
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=67.25 E-value=8.2 Score=32.62 Aligned_cols=44 Identities=27% Similarity=0.309 Sum_probs=34.8
Q ss_pred hcCCCCCeEEEEccccCCCCCCCCccceEEecCCCccHHHHHHHHHHHHHhhhcC
Q 022667 239 SISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNL 293 (294)
Q Consensus 239 ~l~~~~~~vfvIGaf~hGd~~~~~~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI 293 (294)
.++..+.+|++.|-.|-.| ++|. |-||..+++||+..+|.+.++
T Consensus 72 YWpPGkAlClFFGkTpmsd-------dkiq----PaSaVNvIGrIv~~lE~lk~v 115 (126)
T COG2164 72 YWPPGKALCLFFGKTPMSD-------DKIQ----PASAVNVIGRIVKNLELLKSV 115 (126)
T ss_pred ccCCCcEEEEEecCCcCcc-------cccC----ccchHHHHHHHHhhHHhhhcc
Confidence 3566777888888877543 3454 899999999999999998775
No 15
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=66.92 E-value=8.2 Score=36.14 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=47.0
Q ss_pred CcceEEEEecccccccc----CCCeEEEEeccCccccchhHHhhhcC-CCCCeEEEEccccCCC--CCCCCccceEEecC
Q 022667 199 REKLLRVIKNPVTQYLP----VNSRKIGFSYSSEKLVKMRNYVASIS-DDDNLVFVVGAMAHGK--IDCDYTDDLIAISG 271 (294)
Q Consensus 199 ~~~LLkviknpl~~~Lp----~~~~~I~LS~~~gk~v~~~~~~~~l~-~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ 271 (294)
.-.+|+. .||.+-+. .+.++|.|| ..|+..+ .+++..|. ....++|+-|-.--=| +...++++.|||.+
T Consensus 58 ~GMvm~~--epl~~al~~~~~~~~~vi~ls-P~G~~f~-Q~~a~eLa~~~~~liliCGrYEGiDeRv~~~~vdeEiSIGD 133 (222)
T PRK14599 58 PGMLLRV--EPIHKALLSLGEKKGIVILTS-PSGIPFN-QTIARELKESGKPLTFISGYYEGVDHRVTEHLVDMEMSLGN 133 (222)
T ss_pred CCcEecc--hHHHHHHHHHhhcCCcEEEEC-CCCCccC-HHHHHHHHhCCCCEEEEeccccCcHHHHHhhhCcEEEeecc
Confidence 3345544 44544443 235789999 5677554 35566666 3466777765443223 34457999999999
Q ss_pred CCccHHH
Q 022667 272 YPLSAAR 278 (294)
Q Consensus 272 ypLsAa~ 278 (294)
|-||.--
T Consensus 134 yVLtGGE 140 (222)
T PRK14599 134 YVISAGD 140 (222)
T ss_pred EEecCch
Confidence 9998543
No 16
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.89 E-value=8 Score=36.54 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=48.5
Q ss_pred CCcceEEEEeccccccc----cC-CCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEec
Q 022667 198 KREKLLRVIKNPVTQYL----PV-NSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAIS 270 (294)
Q Consensus 198 ~~~~LLkviknpl~~~L----p~-~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS 270 (294)
+.-.+|+. .||.+-+ .. +.++|.|| ..|+..+ ...+..+.....++|+-|-+--=| +...++++.|||.
T Consensus 57 G~GMvmk~--epi~~Al~~~~~~~~~~vi~ls-P~G~~f~-Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIG 132 (240)
T COG0336 57 GAGMVMKP--EPLFDALDSVKAAKKAKVILLS-PQGKPFT-QARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIG 132 (240)
T ss_pred CCccEecc--HHHHHHHHHHHhccCCeEEEEC-CCCCccC-HHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeec
Confidence 33455554 4444433 33 46889999 5677654 345666777778888766553323 3345788999999
Q ss_pred CCCccH
Q 022667 271 GYPLSA 276 (294)
Q Consensus 271 ~ypLsA 276 (294)
+|-||.
T Consensus 133 DyVLtG 138 (240)
T COG0336 133 DYVLTG 138 (240)
T ss_pred cEEecC
Confidence 999984
No 17
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=59.07 E-value=14 Score=36.92 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=40.4
Q ss_pred CeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHHH
Q 022667 218 SRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAAR 278 (294)
Q Consensus 218 ~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa~ 278 (294)
.++|.|| ..|+..+ ...+..+.....++|+-|-.--=| +.+.++++.|||.+|-||.--
T Consensus 78 ~~vi~ls-P~G~~f~-Q~~a~ela~~~~liliCGrYEGiDeRv~~~~vdeeiSIGDyVLtGGE 138 (357)
T PRK01037 78 SKVIYLS-PQGQLLT-AKKSRELASCSHLILLCGHYEGIDERALESEVDEEISIGDYVLTNGG 138 (357)
T ss_pred CcEEEEC-CCCCcCC-HHHHHHHhCCCCEEEEeccccCchHHHHhccCceEEeeccEEecCch
Confidence 5689999 5677554 345666766677777765443223 334479999999999998543
No 18
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=42.89 E-value=27 Score=22.92 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.2
Q ss_pred EEEEecCCeEEEEcCCC
Q 022667 155 VYVRTDKGVLFEVKPHV 171 (294)
Q Consensus 155 VYIhT~~~~lIeVsP~~ 171 (294)
||++|.+|.|+.++..+
T Consensus 3 v~~~~~~g~l~AlD~~T 19 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKT 19 (38)
T ss_dssp EEEETTTSEEEEEETTT
T ss_pred EEEeCCCCEEEEEECCC
Confidence 99999999999998754
No 19
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=38.59 E-value=4.4 Score=21.18 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=5.5
Q ss_pred hhHHHHHH
Q 022667 177 YKRFAGIM 184 (294)
Q Consensus 177 y~RF~GLM 184 (294)
-++|.|||
T Consensus 4 pd~F~GLM 11 (11)
T PF02202_consen 4 PDQFYGLM 11 (11)
T ss_dssp HHHHCCC-
T ss_pred cccceecC
Confidence 47888887
No 20
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=32.68 E-value=40 Score=29.19 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=33.1
Q ss_pred cCCccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHc----Ccc
Q 022667 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQK----LSI 193 (294)
Q Consensus 149 aG~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k----~~I 193 (294)
.+.+. |=|++.|++-.+|+ +|+|+.|.-|-.-+-+++.+ |+|
T Consensus 16 ~~~~~-vEikSvN~R~Ldi~--~rlP~~l~~lE~~ir~~i~~~l~RGkV 61 (159)
T PF03755_consen 16 GGSIS-VEIKSVNHRFLDIS--IRLPRELSSLEPEIRKLIRKKLSRGKV 61 (159)
T ss_pred CeEEE-EEEEecccCceeeE--EeCCHHHHHHHHHHHHHHHHhcccceE
Confidence 46677 99999999988886 89999998887666665554 665
No 21
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.01 E-value=93 Score=20.27 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=17.9
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCC
Q 022667 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHV 171 (294)
Q Consensus 142 LDSPLNKaG~L~~VYIhT~~~~lIeVsP~~ 171 (294)
..||.-..| . |||-|.+|.|+.+++.+
T Consensus 14 ~~~~~v~~g--~-vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGG--R-VYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -S--EECTS--E-EEEE-TTSEEEEEETT-
T ss_pred CcCCEEECC--E-EEEEcCCCEEEEEeCCC
Confidence 356665555 5 99999999999999864
No 22
>COG1772 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.52 E-value=1.7e+02 Score=26.41 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=37.1
Q ss_pred eEEEEeccccccccC-CCeEEEEec-cCccccchhHHhhhcCCCCCeEEEEccccCCC
Q 022667 202 LLRVIKNPVTQYLPV-NSRKIGFSY-SSEKLVKMRNYVASISDDDNLVFVVGAMAHGK 257 (294)
Q Consensus 202 LLkviknpl~~~Lp~-~~~~I~LS~-~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd 257 (294)
.+.+++.|..-+.|. |..+...|. +..+.|.+.+....+-...++.|+||---||=
T Consensus 76 ~l~~~D~p~kgfp~qfG~vvaTTskPd~~k~i~p~dva~~~lr~ks~~~~iGLGr~GL 133 (178)
T COG1772 76 KLHVIDKPKKGFPPQFGEVVATTSKPDEKKAIKPIDVAEEALRGKSFTFLIGLGRHGL 133 (178)
T ss_pred ceEEeccccccCChhhCceeeeccCCCcccccChhhHHHHHhcCCceEEEEecCCCCC
Confidence 355666666666665 444444553 22345777777766556789999999999995
Done!