Query 022669
Match_columns 294
No_of_seqs 182 out of 1257
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 3.9E-30 8.4E-35 246.2 23.2 181 105-285 45-234 (350)
2 KOG1441 Glucose-6-phosphate/ph 100.0 7.1E-30 1.5E-34 240.9 12.4 181 106-286 14-201 (316)
3 TIGR00817 tpt Tpt phosphate/ph 100.0 8.6E-28 1.9E-32 224.1 22.3 182 108-289 1-186 (302)
4 KOG1443 Predicted integral mem 99.8 7.7E-21 1.7E-25 176.4 11.8 173 107-279 14-191 (349)
5 KOG1444 Nucleotide-sugar trans 99.8 1.1E-18 2.4E-23 163.1 17.8 179 112-290 15-203 (314)
6 PF08449 UAA: UAA transporter 99.7 8.5E-15 1.8E-19 137.3 19.4 170 118-289 9-199 (303)
7 KOG1442 GDP-fucose transporter 99.6 6.4E-16 1.4E-20 142.1 5.3 182 108-289 27-230 (347)
8 PRK11689 aromatic amino acid e 99.6 1.5E-13 3.3E-18 128.3 19.8 154 126-285 21-189 (295)
9 PRK11272 putative DMT superfam 99.6 4.2E-13 9E-18 125.0 21.6 162 110-276 10-174 (292)
10 TIGR00950 2A78 Carboxylate/Ami 99.6 1.4E-13 3.1E-18 124.5 18.0 149 126-280 6-156 (260)
11 PLN00411 nodulin MtN21 family 99.5 8.4E-13 1.8E-17 127.4 19.7 170 110-280 15-217 (358)
12 PF06027 DUF914: Eukaryotic pr 99.4 6.7E-12 1.4E-16 120.0 18.5 158 123-280 27-196 (334)
13 TIGR00688 rarD rarD protein. T 99.4 1.6E-11 3.4E-16 111.9 19.3 145 126-276 19-170 (256)
14 PRK15430 putative chlorampheni 99.4 1.7E-11 3.7E-16 114.5 19.8 145 126-276 25-173 (296)
15 PRK11453 O-acetylserine/cystei 99.4 1.9E-11 4.1E-16 114.3 19.8 144 126-278 21-169 (299)
16 PRK10532 threonine and homoser 99.4 3.1E-11 6.8E-16 112.6 20.3 145 126-280 29-176 (293)
17 PF00892 EamA: EamA-like trans 99.3 4.2E-11 9.1E-16 95.4 11.2 118 124-243 6-125 (126)
18 TIGR03340 phn_DUF6 phosphonate 99.3 2.7E-10 5.8E-15 105.5 17.5 153 124-279 16-171 (281)
19 COG0697 RhaT Permeases of the 99.2 4.6E-09 1E-13 95.0 21.7 153 126-280 24-181 (292)
20 COG5070 VRG4 Nucleotide-sugar 99.2 5.5E-11 1.2E-15 107.1 8.2 156 114-273 11-176 (309)
21 PF04142 Nuc_sug_transp: Nucle 99.1 2.3E-09 4.9E-14 98.5 13.7 111 169-279 14-141 (244)
22 KOG1581 UDP-galactose transpor 98.9 1.1E-07 2.4E-12 89.1 17.1 182 107-290 12-218 (327)
23 KOG1580 UDP-galactose transpor 98.9 7.4E-09 1.6E-13 94.2 7.9 152 135-288 50-216 (337)
24 KOG2765 Predicted membrane pro 98.9 2.6E-08 5.5E-13 95.6 11.9 117 175-291 162-289 (416)
25 PF13536 EmrE: Multidrug resis 98.8 1.9E-08 4.2E-13 81.2 8.7 105 143-248 2-110 (113)
26 COG2510 Predicted membrane pro 98.8 8.6E-08 1.9E-12 79.7 11.3 119 125-244 19-139 (140)
27 TIGR00776 RhaT RhaT L-rhamnose 98.8 6E-07 1.3E-11 84.1 17.5 142 128-275 20-175 (290)
28 TIGR00950 2A78 Carboxylate/Ami 98.7 1.2E-06 2.7E-11 79.1 16.8 116 124-240 143-260 (260)
29 KOG1582 UDP-galactose transpor 98.6 8.2E-08 1.8E-12 89.0 7.8 186 101-289 35-231 (367)
30 PLN00411 nodulin MtN21 family 98.5 4.7E-06 1E-10 80.7 15.7 120 124-244 204-328 (358)
31 KOG3912 Predicted integral mem 98.5 3.5E-06 7.6E-11 78.6 13.5 157 121-278 15-202 (372)
32 PRK10532 threonine and homoser 98.4 1E-05 2.2E-10 75.6 16.0 117 124-243 163-280 (293)
33 PRK11272 putative DMT superfam 98.4 1E-05 2.2E-10 75.4 15.1 120 125-246 166-287 (292)
34 PRK11689 aromatic amino acid e 98.4 9.1E-06 2E-10 76.0 14.7 116 124-244 171-287 (295)
35 KOG2234 Predicted UDP-galactos 98.3 2.9E-05 6.4E-10 74.3 17.2 120 171-290 91-225 (345)
36 PRK15051 4-amino-4-deoxy-L-ara 98.2 4.7E-05 1E-09 61.9 12.5 64 180-243 45-108 (111)
37 KOG4510 Permease of the drug/m 98.2 1.4E-06 3.1E-11 80.7 3.5 167 106-278 36-217 (346)
38 PRK11453 O-acetylserine/cystei 98.1 0.0001 2.2E-09 69.0 15.9 121 124-244 158-287 (299)
39 COG5006 rhtA Threonine/homoser 98.1 8.3E-05 1.8E-09 68.6 14.3 141 127-277 30-173 (292)
40 TIGR03340 phn_DUF6 phosphonate 98.1 1.3E-05 2.8E-10 74.3 9.2 64 178-241 217-280 (281)
41 KOG4314 Predicted carbohydrate 98.1 6E-06 1.3E-10 73.8 5.5 107 171-277 52-160 (290)
42 TIGR00817 tpt Tpt phosphate/ph 98.0 3.7E-05 8E-10 71.8 10.8 124 120-244 156-293 (302)
43 KOG1583 UDP-N-acetylglucosamin 98.0 5.2E-06 1.1E-10 77.3 4.6 145 128-276 22-188 (330)
44 PRK15430 putative chlorampheni 98.0 0.00022 4.8E-09 66.6 14.9 69 175-243 216-284 (296)
45 PF03151 TPT: Triose-phosphate 98.0 0.00045 9.7E-09 57.5 15.2 128 116-243 7-152 (153)
46 COG0697 RhaT Permeases of the 97.8 0.00095 2.1E-08 60.2 15.9 118 124-245 169-288 (292)
47 COG2962 RarD Predicted permeas 97.7 0.0016 3.5E-08 61.1 15.9 150 115-274 14-170 (293)
48 PTZ00343 triose or hexose phos 97.6 0.0012 2.6E-08 63.6 14.1 125 119-243 204-347 (350)
49 TIGR00776 RhaT RhaT L-rhamnose 97.6 0.0013 2.9E-08 61.6 12.9 127 107-243 153-287 (290)
50 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.0015 3.2E-08 54.6 8.3 71 175-245 50-123 (129)
51 PRK10452 multidrug efflux syst 97.3 0.0021 4.6E-08 53.2 9.0 70 175-244 33-103 (120)
52 PRK10650 multidrug efflux syst 97.0 0.01 2.2E-07 48.3 10.6 68 175-242 38-106 (109)
53 PRK09541 emrE multidrug efflux 97.0 0.0061 1.3E-07 49.6 9.2 68 177-244 35-103 (110)
54 PRK11431 multidrug efflux syst 97.0 0.0083 1.8E-07 48.5 9.7 69 175-243 32-101 (105)
55 PF06800 Sugar_transport: Suga 96.9 0.013 2.9E-07 54.8 11.4 104 170-273 43-159 (269)
56 PF08449 UAA: UAA transporter 96.8 0.029 6.3E-07 52.6 13.2 133 112-244 157-297 (303)
57 KOG2766 Predicted membrane pro 96.6 0.00017 3.6E-09 66.9 -3.4 152 125-280 34-194 (336)
58 COG2076 EmrE Membrane transpor 96.6 0.0097 2.1E-07 48.2 7.1 69 175-243 33-102 (106)
59 PF00893 Multi_Drug_Res: Small 96.4 0.03 6.5E-07 43.9 8.8 56 180-235 37-93 (93)
60 COG5006 rhtA Threonine/homoser 96.1 0.15 3.4E-06 47.4 13.2 115 124-240 163-278 (292)
61 COG2962 RarD Predicted permeas 96.0 0.27 5.8E-06 46.5 14.4 75 170-244 209-283 (293)
62 PF06027 DUF914: Eukaryotic pr 95.8 0.28 6.1E-06 47.4 14.3 122 124-246 183-307 (334)
63 TIGR00803 nst UDP-galactose tr 95.8 0.12 2.7E-06 46.0 11.2 66 176-241 156-221 (222)
64 TIGR00803 nst UDP-galactose tr 95.8 0.024 5.2E-07 50.6 6.3 83 196-278 2-111 (222)
65 PF10639 UPF0546: Uncharacteri 95.7 0.04 8.7E-07 45.1 6.7 70 172-242 42-112 (113)
66 PF05653 Mg_trans_NIPA: Magnes 95.5 0.031 6.7E-07 53.0 6.3 70 174-243 51-121 (300)
67 PF04657 DUF606: Protein of un 95.0 0.93 2E-05 38.1 13.2 116 125-241 17-138 (138)
68 PRK13499 rhamnose-proton sympo 94.6 0.78 1.7E-05 44.5 13.2 102 168-269 69-191 (345)
69 TIGR00688 rarD rarD protein. T 94.3 1.5 3.2E-05 39.7 13.7 50 170-219 206-255 (256)
70 PF06800 Sugar_transport: Suga 94.2 1.4 2.9E-05 41.5 13.4 68 174-241 197-268 (269)
71 KOG4510 Permease of the drug/m 93.0 0.11 2.3E-06 48.9 3.8 77 166-242 247-323 (346)
72 COG3238 Uncharacterized protei 88.2 14 0.00031 31.7 12.1 118 124-243 20-145 (150)
73 KOG1581 UDP-galactose transpor 87.8 6.4 0.00014 37.7 10.6 129 112-241 175-310 (327)
74 KOG2922 Uncharacterized conser 87.5 0.54 1.2E-05 45.1 3.3 69 175-243 66-135 (335)
75 PF04142 Nuc_sug_transp: Nucle 87.3 23 0.00051 32.4 15.5 121 112-233 117-242 (244)
76 KOG1441 Glucose-6-phosphate/ph 85.9 2.3 4.9E-05 40.9 6.6 130 112-243 166-306 (316)
77 COG5070 VRG4 Nucleotide-sugar 82.9 9.3 0.0002 35.4 8.9 121 117-238 163-290 (309)
78 PF06379 RhaT: L-rhamnose-prot 79.7 23 0.0005 34.5 10.8 127 145-271 41-192 (344)
79 KOG1444 Nucleotide-sugar trans 77.8 17 0.00036 35.0 9.2 132 111-243 159-299 (314)
80 PRK13499 rhamnose-proton sympo 75.6 83 0.0018 30.7 14.0 70 176-245 264-342 (345)
81 KOG1580 UDP-galactose transpor 73.5 7.8 0.00017 36.2 5.5 71 171-241 240-310 (337)
82 KOG4831 Unnamed protein [Funct 58.5 14 0.0003 30.2 3.6 70 172-242 53-123 (125)
83 KOG2765 Predicted membrane pro 56.9 24 0.00053 34.9 5.6 44 205-248 351-394 (416)
84 PF09930 DUF2162: Predicted tr 56.4 1.6E+02 0.0035 26.9 11.9 73 170-242 100-175 (224)
85 COG4975 GlcU Putative glucose 53.8 9.7 0.00021 35.7 2.3 72 170-241 207-282 (288)
86 KOG1442 GDP-fucose transporter 52.6 26 0.00056 33.5 4.9 133 109-242 184-325 (347)
87 COG4975 GlcU Putative glucose 51.7 11 0.00023 35.4 2.2 107 166-272 53-172 (288)
88 PF08627 CRT-like: CRT-like; 51.6 32 0.00069 28.9 4.8 41 105-145 53-94 (130)
89 PF04342 DUF486: Protein of un 38.4 2.2E+02 0.0047 23.2 9.6 58 182-242 45-106 (108)
90 PF11139 DUF2910: Protein of u 33.6 3.4E+02 0.0073 23.9 11.1 50 108-157 29-84 (214)
91 COG4420 Predicted membrane pro 30.9 98 0.0021 27.7 4.8 37 109-151 63-99 (191)
92 PF07331 TctB: Tripartite tric 28.3 3.2E+02 0.0069 22.0 10.9 43 137-179 37-79 (141)
93 COG5373 Predicted membrane pro 26.4 9.1E+02 0.02 26.7 13.6 18 122-140 145-164 (931)
94 KOG2234 Predicted UDP-galactos 24.8 6.7E+02 0.014 24.6 13.2 124 117-243 191-321 (345)
95 KOG1582 UDP-galactose transpor 24.1 3.8E+02 0.0083 25.8 7.7 43 208-250 296-338 (367)
96 COG3169 Uncharacterized protei 23.3 4.1E+02 0.0088 21.6 9.8 30 213-242 84-113 (116)
97 PTZ00358 hypothetical protein; 20.6 8.2E+02 0.018 24.1 10.9 104 108-213 6-112 (367)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=3.9e-30 Score=246.20 Aligned_cols=181 Identities=38% Similarity=0.619 Sum_probs=164.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC--hHHHHHHHHHHHHH
Q 022669 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPID--SKLLKLLIPVAVCH 182 (294)
Q Consensus 105 ~~~l~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls--~~~~~~llpvgl~~ 182 (294)
.+.+++..+|++||.+|+.++++||++++.+|+|++++++|++++++++.++|..+.+++++.+ +++++.++|+|+++
T Consensus 45 ~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 45 NFKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999988777876655544453 45889999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHH
Q 022669 183 ALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI 262 (294)
Q Consensus 183 ~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v 262 (294)
...+...|+|+++++++++|++|+++|+|+++++++++|||++++++++++++++||.+++.+|.++|+.|++++++|++
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~ 204 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNL 204 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccc-------chhhHHH
Q 022669 263 SFTYRSIYSKKAMVIF-------YETLCCS 285 (294)
Q Consensus 263 ~~al~~V~~Kk~l~~~-------~~~n~~a 285 (294)
++++|+++.||.++++ ++.|.|.
T Consensus 205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~ 234 (350)
T PTZ00343 205 GSSLRSIFAKKTMKNKSEIGENLTASNIYM 234 (350)
T ss_pred HHHHHHHHHHHHhcccccccccCCHHHHHH
Confidence 9999999999988754 3566665
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=7.1e-30 Score=240.85 Aligned_cols=181 Identities=41% Similarity=0.602 Sum_probs=167.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHHHH
Q 022669 106 PALVTGFFFFMWYFLNVIFNILNKRIYN--YFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI-DSKLLKLLIPVAVCH 182 (294)
Q Consensus 106 ~~l~~~~~i~~w~~~si~~~i~NK~vL~--~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~l-s~~~~~~llpvgl~~ 182 (294)
+.+..+.++..||++|++++++||++++ +||||++++++|++++.+..++.+..+..+..+. ++.+++.++|+|++|
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~ 93 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF 93 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH
Confidence 4678899999999999999999999999 8999999999999999999999988887776655 456899999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHH
Q 022669 183 ALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI 262 (294)
Q Consensus 183 ~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v 262 (294)
+++++++|.|++++||||+|++|+++|+|++++++++.+|++++.+++++++++.||.+++++|.+||+.|++.++++++
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~ 173 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNL 173 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccc----cchhhHHHH
Q 022669 263 SFTYRSIYSKKAMVI----FYETLCCSS 286 (294)
Q Consensus 263 ~~al~~V~~Kk~l~~----~~~~n~~a~ 286 (294)
.+++|++++|+.+++ .|+.|.+..
T Consensus 174 ~~al~~I~~~~ll~~~~~~~~~~~ll~y 201 (316)
T KOG1441|consen 174 AFALRNILSKKLLTSKGESLNSMNLLYY 201 (316)
T ss_pred HHHHHHHHHHHhhhccccccCchHHHHH
Confidence 999999999998853 466666543
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=8.6e-28 Score=224.10 Aligned_cols=182 Identities=62% Similarity=1.042 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 022669 108 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHV 187 (294)
Q Consensus 108 l~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~ 187 (294)
++++.++..||.+|+.++++||+++++|++|+++++.|++++.+++.+.|..+.+++++.++++++.++++|++++.++.
T Consensus 1 ~~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 1 LQTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHV 80 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999998877776555555567789999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHHHHHH
Q 022669 188 TSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYR 267 (294)
Q Consensus 188 ~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~~al~ 267 (294)
+.|++++++++++++++++++|+|+++++++++|||++++++++++++++|+.+...+|.++++.|+++++++++++++|
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988788888999999999999999999
Q ss_pred HHHHhhhcc--ccch--hhHHHHHhh
Q 022669 268 SIYSKKAMV--IFYE--TLCCSSCKA 289 (294)
Q Consensus 268 ~V~~Kk~l~--~~~~--~n~~a~~l~ 289 (294)
+++.||.++ ++|+ ...|...+|
T Consensus 161 ~v~~k~~~~~~~~~~~~~~~~~~~~~ 186 (302)
T TIGR00817 161 NIFSKKAMTIKSLDKTNLYAYISIMS 186 (302)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHH
Confidence 999999888 6666 444444433
No 4
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.84 E-value=7.7e-21 Score=176.42 Aligned_cols=173 Identities=21% Similarity=0.321 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-Hhc--CCC-CCCCChH-HHHHHHHHHHH
Q 022669 107 ALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVG--LPK-RAPIDSK-LLKLLIPVAVC 181 (294)
Q Consensus 107 ~l~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g--~~~-~~~ls~~-~~~~llpvgl~ 181 (294)
...+..++..||++|++..+++|+.-.+|+||++++.+|+++-.++..... ..+ .++ +.+.+|+ +.+...|++++
T Consensus 14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala 93 (349)
T KOG1443|consen 14 RVLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA 93 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh
Confidence 345566779999999999999999999999999999999998887654332 222 111 2345654 67889999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHH
Q 022669 182 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISN 261 (294)
Q Consensus 182 ~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~ 261 (294)
.++.+.++|||++|+++|+|++.|+..++|+.+++..|.-|++++...+.+++|.+|+.+.++++.+||..|+.+++++.
T Consensus 94 ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS 173 (349)
T KOG1443|consen 94 TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAAS 173 (349)
T ss_pred hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccc
Q 022669 262 ISFTYRSIYSKKAMVIFY 279 (294)
Q Consensus 262 v~~al~~V~~Kk~l~~~~ 279 (294)
++.++|+.+.|.++++-|
T Consensus 174 ~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 174 LLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred HhhhhhHHHHHHHHhcCc
Confidence 999999999999887644
No 5
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-18 Score=163.11 Aligned_cols=179 Identities=21% Similarity=0.317 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcHHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 022669 112 FFFFMWYFLNVIFNILNKRIYNYFPYPYFVSV--IHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTS 189 (294)
Q Consensus 112 ~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~--~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~ 189 (294)
.-.+.|..+|+.+++.||+++++++||..+.. .|++++.+.++++-+.|..+.++++++..|+++|+++++.+.+.++
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~ 94 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTG 94 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHc
Confidence 44566778899999999999999999977777 8999999998888888888888999999999999999999999999
Q ss_pred HHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHHHHHHHH
Q 022669 190 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSI 269 (294)
Q Consensus 190 n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~~al~~V 269 (294)
..+++|++++++.++|..+|+++++.+.+++|.++++.+|.++..+++|......+|.+||..|+.|++.++++.+.+.+
T Consensus 95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v 174 (314)
T KOG1444|consen 95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVV 174 (314)
T ss_pred cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccc--------cchhhHHHHHhhh
Q 022669 270 YSKKAMVI--------FYETLCCSSCKAA 290 (294)
Q Consensus 270 ~~Kk~l~~--------~~~~n~~a~~l~~ 290 (294)
+.||-.+. +.+.|++++..+.
T Consensus 175 ~~kk~vd~~~l~~~~lv~yNnl~~L~~l~ 203 (314)
T KOG1444|consen 175 YVKKSVDSANLNKFGLVFYNNLLSLPPLL 203 (314)
T ss_pred HHHHhhccccccceeEEeehhHHHHHHHH
Confidence 99875431 3556776665543
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.66 E-value=8.5e-15 Score=137.33 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHhcc--C-CcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022669 118 YFLNVIFNILNKRIYNY--F-PYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFA 194 (294)
Q Consensus 118 ~~~si~~~i~NK~vL~~--f-p~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~ 194 (294)
|+.-..+.++++++.+. . ++|+++++.|+++..+...+...... .++.++..++++++.++++.++.+++|.|++
T Consensus 9 ~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 9 FGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445666777664 2 37999999999999887665443222 1233445688899999999999999999999
Q ss_pred ccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccccc----cc------HHHHHHHHHHHHHH
Q 022669 195 AVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS----FN------WTGFISAMISNISF 264 (294)
Q Consensus 195 ~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~----fn------~~G~ilallS~v~~ 264 (294)
|+|+++.+++|+..|+++++++++++|||+++.++++++++++|+++....|.+ .+ ..|+++.+++.++.
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~ 166 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLD 166 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765421 11 23999999999999
Q ss_pred HHHHHHHhhhcccc--------chhhHHHHHhh
Q 022669 265 TYRSIYSKKAMVIF--------YETLCCSSCKA 289 (294)
Q Consensus 265 al~~V~~Kk~l~~~--------~~~n~~a~~l~ 289 (294)
+++.+++||.+++. .++|+++.++.
T Consensus 167 a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~ 199 (303)
T PF08449_consen 167 AFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFL 199 (303)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999999987643 33666655544
No 7
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.4e-16 Score=142.10 Aligned_cols=182 Identities=18% Similarity=0.248 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHH--hcC---CCC--CCCChHHHHHHH
Q 022669 108 LVTGFFFFMWYFLNVIFNILNKRIYNY----FPYPYFVSVIHLLVGVVYCLVSWA--VGL---PKR--APIDSKLLKLLI 176 (294)
Q Consensus 108 l~~~~~i~~w~~~si~~~i~NK~vL~~----fp~Pl~Lt~~q~~~~~lllli~~~--~g~---~~~--~~ls~~~~~~ll 176 (294)
.++..-...|+.+++.+.+.||++++. .+.|++.+++|.++...+|...-. .+. ... -++|.+..+++.
T Consensus 27 ~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vl 106 (347)
T KOG1442|consen 27 KQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVL 106 (347)
T ss_pred hchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhc
Confidence 356677788999999999999999995 568999999999999888765432 111 111 136667788999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc---ccccHHH
Q 022669 177 PVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTG 253 (294)
Q Consensus 177 pvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e---~~fn~~G 253 (294)
|+++.+.+.+.++|.+++|++|+|+++=|+++.+|+++++++++|++.+.....+++++++|..+-+..| ..++|.|
T Consensus 107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~G 186 (347)
T KOG1442|consen 107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIG 186 (347)
T ss_pred chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877 5678999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc--------chhhHHHHHhh
Q 022669 254 FISAMISNISFTYRSIYSKKAMVIF--------YETLCCSSCKA 289 (294)
Q Consensus 254 ~ilallS~v~~al~~V~~Kk~l~~~--------~~~n~~a~~l~ 289 (294)
.++.+.++++-++..++.||.+... .++|.+++++.
T Consensus 187 vifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLf 230 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLF 230 (347)
T ss_pred hHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHH
Confidence 9999999999999999999866432 34777777664
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.58 E-value=1.5e-13 Score=128.25 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=117.6
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc----cchhHH
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAA----VAVSFT 201 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~----vsvs~~ 201 (294)
...|..++++| |..+.++|+.++.+++.... +.++ ..+++++.++.-++.+...+.+.+.++++ .+.+..
T Consensus 21 ~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~--~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a 94 (295)
T PRK11689 21 GLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV--GFPR---LRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEV 94 (295)
T ss_pred HHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc--cccc---cccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66799999998 99999999999988765432 1122 12222333333344455666666666654 577778
Q ss_pred HHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc-----------cccHHHHHHHHHHHHHHHHHHHH
Q 022669 202 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-----------SFNWTGFISAMISNISFTYRSIY 270 (294)
Q Consensus 202 ~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~-----------~fn~~G~ilallS~v~~al~~V~ 270 (294)
.++.++.|+|+.+++++++|||+++.+++++++.++|+.+....+. +.+..|+++++++.++|+.++++
T Consensus 95 ~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~ 174 (295)
T PRK11689 95 GMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNV 174 (295)
T ss_pred HHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988765432 12356999999999999999999
Q ss_pred HhhhccccchhhHHH
Q 022669 271 SKKAMVIFYETLCCS 285 (294)
Q Consensus 271 ~Kk~l~~~~~~n~~a 285 (294)
.||..+++|+...+.
T Consensus 175 ~k~~~~~~~~~~~~~ 189 (295)
T PRK11689 175 TRKYARGKNGITLFF 189 (295)
T ss_pred HhhccCCCCchhHHH
Confidence 999887777755443
No 9
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.57 E-value=4.2e-13 Score=125.05 Aligned_cols=162 Identities=17% Similarity=0.246 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH-HHHHHH
Q 022669 110 TGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCH-ALGHVT 188 (294)
Q Consensus 110 ~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~-~l~~~~ 188 (294)
+..++.....++..+ +..|..+++.+ |..++.+|++++.+++++....+..+ ..++++++.....|.+. .....+
T Consensus 10 ~~~~~~~~~iWg~~~-~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTY-LVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555565555 77899999887 99999999999988765544332211 23566788888888764 456777
Q ss_pred HHHhh-cccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccc-cccccHHHHHHHHHHHHHHHH
Q 022669 189 SNVSF-AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTY 266 (294)
Q Consensus 189 ~n~sl-~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~-e~~fn~~G~ilallS~v~~al 266 (294)
.+++. ++++++...++-++.|+++.+++.+ +|||+++++++++++.++|+.+...+ +.+.+..|..+++++.++|+.
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~ 164 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAF 164 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHH
Confidence 88898 9999999999999999999999986 69999999999999999999887543 445667899999999999999
Q ss_pred HHHHHhhhcc
Q 022669 267 RSIYSKKAMV 276 (294)
Q Consensus 267 ~~V~~Kk~l~ 276 (294)
++++.||..+
T Consensus 165 ~~~~~~~~~~ 174 (292)
T PRK11272 165 GSVWSSRLPL 174 (292)
T ss_pred HHHHHHhcCC
Confidence 9999998754
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.57 E-value=1.4e-13 Score=124.49 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=124.6
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHH
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAV-CHALGHVTSNVSFAAVAVSFTHTI 204 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl-~~~l~~~~~n~sl~~vsvs~~~ii 204 (294)
+..|+.+++...|..+...|++++.+++.+....+ .++++++..+..+. .+.++..+.+.++++++++...++
T Consensus 6 ~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 6 VVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 56799988755589998889998888766554433 23445666677765 467788899999999999999999
Q ss_pred HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccc-cccccHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 022669 205 KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYRSIYSKKAMVIFYE 280 (294)
Q Consensus 205 kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~-e~~fn~~G~ilallS~v~~al~~V~~Kk~l~~~~~ 280 (294)
.+++|+++.+++.+++|||++++++.++++.++|+.+.... +.+.+..|+++++++.++++.++++.|+..++.++
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~ 156 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP 156 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence 99999999999999999999999999999999998887543 34566789999999999999999999999877764
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.53 E-value=8.4e-13 Score=127.36 Aligned_cols=170 Identities=11% Similarity=0.026 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH-hcC-CCCCCCChHHHHHHHHHHHHHHHHHH
Q 022669 110 TGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA-VGL-PKRAPIDSKLLKLLIPVAVCHALGHV 187 (294)
Q Consensus 110 ~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~-~g~-~~~~~ls~~~~~~llpvgl~~~l~~~ 187 (294)
....+++ =....++.++.|..++.--.|..+.++|+.++.+++++... .+. ++.++.+++++..+..++++..+...
T Consensus 15 ~~~~~~~-q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~ 93 (358)
T PLN00411 15 LTAMLAT-ETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVI 93 (358)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3344444 23445556778999987334888999999999887654432 222 22234467788888888887755667
Q ss_pred HHHHhhcccchhHHHHHHhhhhHHHHHHHHHH------hcccCChhhHHHHhHhhhhheecccc-cc-------------
Q 022669 188 TSNVSFAAVAVSFTHTIKALEPFFNAAASQFI------LGQQLPLTLWLSLAPVVIGVSMASLT-EL------------- 247 (294)
Q Consensus 188 ~~n~sl~~vsvs~~~iikal~Pvft~lls~l~------lgek~s~~~~lsllliv~GV~la~~~-e~------------- 247 (294)
+.+++++|++++...++-+++|+|++++++++ ++||+++.+++++++.++|+.+.... +.
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~ 173 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF 173 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence 89999999999999999999999999999999 69999999999999999999875531 11
Q ss_pred ----------ccc-HHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 022669 248 ----------SFN-WTGFISAMISNISFTYRSIYSKKAMVIFYE 280 (294)
Q Consensus 248 ----------~fn-~~G~ilallS~v~~al~~V~~Kk~l~~~~~ 280 (294)
..+ ..|..+++++.++|+++++++|+..+++++
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~ 217 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA 217 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 112 459999999999999999999998877655
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.44 E-value=6.7e-12 Score=120.01 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=122.0
Q ss_pred HHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 022669 123 IFNILNKRIYNY-FPYPYFVSVIHLLVGVVYCLVSWAVGLP--KRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVS 199 (294)
Q Consensus 123 ~~~i~NK~vL~~-fp~Pl~Lt~~q~~~~~lllli~~~~g~~--~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs 199 (294)
+.+..+.++-++ +..|.+-+.+.++.-.++.......+.. +..+.-+++|++.+.++++...++++.+.|++|++++
T Consensus 27 ~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvt 106 (334)
T PF06027_consen 27 GTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVT 106 (334)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHh
Confidence 334445555443 6678888877665544432222222211 1112334567778888999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc---------cccHHHHHHHHHHHHHHHHHHHH
Q 022669 200 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------SFNWTGFISAMISNISFTYRSIY 270 (294)
Q Consensus 200 ~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~---------~fn~~G~ilallS~v~~al~~V~ 270 (294)
-.|++.++.-+|+++++++++++|+++.+++++++.++|+.+....|. +-...|.++++++++.+++++|+
T Consensus 107 S~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~ 186 (334)
T PF06027_consen 107 SVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVL 186 (334)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765542 12379999999999999999999
Q ss_pred Hhhhccccch
Q 022669 271 SKKAMVIFYE 280 (294)
Q Consensus 271 ~Kk~l~~~~~ 280 (294)
.|+..++.+.
T Consensus 187 ~E~~v~~~~~ 196 (334)
T PF06027_consen 187 EEKLVKKAPR 196 (334)
T ss_pred HHHhcccCCH
Confidence 9998887655
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.43 E-value=1.6e-11 Score=111.90 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=110.5
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCC-----CCCChHH-HHHHHHHHHHHHHHHHHHHHhhcccch
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKR-----APIDSKL-LKLLIPVAVCHALGHVTSNVSFAAVAV 198 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~-----~~ls~~~-~~~llpvgl~~~l~~~~~n~sl~~vsv 198 (294)
+..|+ +.+.+ |..+.++|++++.+.+++.. ..+.++. .+.++++ +..+...+++..++..+..++++++++
T Consensus 19 ~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~ 96 (256)
T TIGR00688 19 YYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSS 96 (256)
T ss_pred HHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 44687 45676 99999999999987655433 2221110 0112222 334555667777888999999999999
Q ss_pred hHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022669 199 SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMV 276 (294)
Q Consensus 199 s~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~~al~~V~~Kk~l~ 276 (294)
+...++..++|+|+++++.+++|||+++++++++++.++|+.+....+.+.+ .+++++.++++.|.+..|+..+
T Consensus 97 ~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 97 LEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999987754322222 3578899999999999998753
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.42 E-value=1.7e-11 Score=114.52 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=108.3
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCC---C-CChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRA---P-IDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFT 201 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~---~-ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~ 201 (294)
++.|.. .++| |..+.++|++++.+.+...+..+.+.+. + .+++++.....-++....++.+.+++++++|++..
T Consensus 25 ~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a 102 (296)
T PRK15430 25 AYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA 102 (296)
T ss_pred HHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 344875 5677 9999999999998765444322111100 0 12333332232234566788999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022669 202 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMV 276 (294)
Q Consensus 202 ~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~~al~~V~~Kk~l~ 276 (294)
.++..+.|+++++++++++|||+++++++++++.++|+.+....+.+.. .+.+++.++|++|.++.|+...
T Consensus 103 ~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 103 SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFYGLVRKKIAV 173 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988754322222 4677889999999999998754
No 15
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.42 E-value=1.9e-11 Score=114.31 Aligned_cols=144 Identities=16% Similarity=0.249 Sum_probs=111.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH-HHHHHHHHhhcc-cchhHHHH
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHA-LGHVTSNVSFAA-VAVSFTHT 203 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~-l~~~~~n~sl~~-vsvs~~~i 203 (294)
...|..+++++ |..+.++|++++.+.+.+... + + +.+ ++.++..+++.. ....+...++++ ++.+...+
T Consensus 21 ~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~-~-~---~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~ 91 (299)
T PRK11453 21 VVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA-R-P---KVP---LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASL 91 (299)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc-C-C---CCc---hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 55699998887 999999999987765443321 1 1 112 333445555433 334456678887 78999999
Q ss_pred HHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc---ccccHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 022669 204 IKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISFTYRSIYSKKAMVIF 278 (294)
Q Consensus 204 ikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e---~~fn~~G~ilallS~v~~al~~V~~Kk~l~~~ 278 (294)
+-+++|+++.+++++++|||++.++++++++.++|+.+....+ .+.++.|+.+++++.++|+.+++++||..++.
T Consensus 92 l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~ 169 (299)
T PRK11453 92 VLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHS 169 (299)
T ss_pred HHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999998876432 23456899999999999999999999976543
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.41 E-value=3.1e-11 Score=112.62 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=113.9
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIK 205 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iik 205 (294)
...|+.++++| |..+.++|++++.+++.+....+ + .+.++++++..+..|++......+.+++++++|++...++.
T Consensus 29 ~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~ 104 (293)
T PRK10532 29 SLAKSLFPLVG-APGVTALRLALGTLILIAIFKPW-R--LRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALE 104 (293)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHH-h--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45899999998 99999999999998776554321 1 13456778888888887777778889999999999999999
Q ss_pred hhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccc---cccccHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 022669 206 ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELSFNWTGFISAMISNISFTYRSIYSKKAMVIFYE 280 (294)
Q Consensus 206 al~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~---e~~fn~~G~ilallS~v~~al~~V~~Kk~l~~~~~ 280 (294)
.+.|+++++++. |++... ..+.+.++|+.+.... ..+.+..|.++++++.++++.|.++.||..++.++
T Consensus 105 ~t~Pi~~~ll~~----~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~ 176 (293)
T PRK10532 105 FTGPLAVALFSS----RRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAEHGP 176 (293)
T ss_pred HHHHHHHHHHhc----CChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999988763 555443 4456678998776421 22346789999999999999999999998777666
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.28 E-value=4.2e-11 Score=95.41 Aligned_cols=118 Identities=16% Similarity=0.311 Sum_probs=98.0
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKRAPIDSKLLKLLIPVAVC-HALGHVTSNVSFAAVAVSFT 201 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~~~ls~~~~~~llpvgl~-~~l~~~~~n~sl~~vsvs~~ 201 (294)
+.+++|+..++++ |...+.+|+.++.+ +.+.. ..+..+..+.+.+++...+..+++ ..+++.+.+.++++.+++..
T Consensus 6 ~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 83 (126)
T PF00892_consen 6 YSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV 83 (126)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH
Confidence 3477899999987 99999999999997 43332 222222245567777778888876 57889999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 202 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 202 ~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
+++..++|+++.++++++++|++++.++++++++++|+.+..
T Consensus 84 ~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 84 SILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988754
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.27 E-value=2.7e-10 Score=105.52 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=111.0
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVG--LPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFT 201 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g--~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~ 201 (294)
.++.+|...++-+ +.. ...+..+.+++......+ ..+.++.+++.+..++..++....++.+.+.++++.+++..
T Consensus 16 ~~~~~k~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (281)
T TIGR03340 16 WNLMAKSHADKEP-DFL--WWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLV 92 (281)
T ss_pred HHHHHhhcCCchh-HHH--HHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 3466787777632 432 334444444443333222 12222233444444444456677888899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc-ccccHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 022669 202 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE-LSFNWTGFISAMISNISFTYRSIYSKKAMVIFY 279 (294)
Q Consensus 202 ~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e-~~fn~~G~ilallS~v~~al~~V~~Kk~l~~~~ 279 (294)
.++..+.|+++++++++++||++++.++++++++++|+.+....+ .+.+..|+.+++++.++++.|+++.|+..++.+
T Consensus 93 ~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~ 171 (281)
T TIGR03340 93 YPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAALGVP 171 (281)
T ss_pred hhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccccchh
Confidence 999999999999999999999999999999999999998876433 234567888999999999999999998755443
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.20 E-value=4.6e-09 Score=94.99 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=111.5
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHH
Q 022669 126 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVA-VCHALGHVTSNVSFAAVAVSFTHTI 204 (294)
Q Consensus 126 i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvg-l~~~l~~~~~n~sl~~vsvs~~~ii 204 (294)
...|....+...+......+++++.+........+.....+..+ +++.....+ +.......+.+.++++++++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (292)
T COG0697 24 IALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALR-PWLLLLLLALLGLALPFLLLFLALKYTSASVASLI 102 (292)
T ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhccccccccc-chHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 44466666533255555558888777633232222111111111 233344444 5566778889999999999999999
Q ss_pred HhhhhHHHHHHHH-HHhcccCChhhHHHHhHhhhhheeccccccccc---HHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 022669 205 KALEPFFNAAASQ-FILGQQLPLTLWLSLAPVVIGVSMASLTELSFN---WTGFISAMISNISFTYRSIYSKKAMVIFYE 280 (294)
Q Consensus 205 kal~Pvft~lls~-l~lgek~s~~~~lsllliv~GV~la~~~e~~fn---~~G~ilallS~v~~al~~V~~Kk~l~~~~~ 280 (294)
.++.|+++.+++. ++++||+++.++.+++.++.|+.++...+...+ ..|..+++++.+++++++++.|+.. +.+.
T Consensus 103 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~ 181 (292)
T COG0697 103 IGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-RLGP 181 (292)
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence 9999999999997 777999999999999999999999987655433 5899999999999999999999887 4444
No 20
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.19 E-value=5.5e-11 Score=107.13 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 022669 114 FFMWYFLNVIFNILNKRIYNY--FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNV 191 (294)
Q Consensus 114 i~~w~~~si~~~i~NK~vL~~--fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~ 191 (294)
++.|++.++.+++.||++++. |+.-..+.+.|-+++.+.+.++...|..+.+ .++.+.++|++++-...++.+.-
T Consensus 11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt~SK 87 (309)
T COG5070 11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYTSSK 87 (309)
T ss_pred HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHhccc
Confidence 456778999999999999996 7666777788999888877666555544322 34577889999999888999999
Q ss_pred hhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc--------cccHHHHHHHHHHHHH
Q 022669 192 SFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL--------SFNWTGFISAMISNIS 263 (294)
Q Consensus 192 sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~--------~fn~~G~ilallS~v~ 263 (294)
+++|.+++.+++.|.++.+.++..+.+++|.+.+-....+.++++..-..+.++|. .+| -|+.|+...+++
T Consensus 88 sLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Ncls 166 (309)
T COG5070 88 SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLS 166 (309)
T ss_pred ceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHh
Confidence 99999999999999999999999999999999999999999999998888888876 455 599999999999
Q ss_pred HHHHHHHHhh
Q 022669 264 FTYRSIYSKK 273 (294)
Q Consensus 264 ~al~~V~~Kk 273 (294)
.+.+-...||
T Consensus 167 saafVL~mrk 176 (309)
T COG5070 167 SAAFVLIMRK 176 (309)
T ss_pred HHHHHHHHHH
Confidence 9988877665
No 21
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.07 E-value=2.3e-09 Score=98.49 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc-
Q 022669 169 SKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL- 247 (294)
Q Consensus 169 ~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~- 247 (294)
+++..+....+++|++.+.+...++++++.+.+|+++.+..++|++++++++|+|++..+|+++++.++|+.+...++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4456677788899999999999999999999999999999999999999999999999999999999999999854221
Q ss_pred --------c--------ccHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 022669 248 --------S--------FNWTGFISAMISNISFTYRSIYSKKAMVIFY 279 (294)
Q Consensus 248 --------~--------fn~~G~ilallS~v~~al~~V~~Kk~l~~~~ 279 (294)
+ -...|+...+++.++.++..||.+|.+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 1258999999999999999999999988753
No 22
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=1.1e-07 Score=89.08 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 022669 107 ALVTGFFFFMWYFLNVIFNILNKRIYN--------YFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPV 178 (294)
Q Consensus 107 ~l~~~~~i~~w~~~si~~~i~NK~vL~--------~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpv 178 (294)
.++..+.+..-|+.-+.+.++...+.. +|.+|.++..+|-+.+.++...+.. ..++ +....+.|.+...+
T Consensus 12 ~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~-~~k~-~~~~~apl~~y~~i 89 (327)
T KOG1581|consen 12 IILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLK-WWKK-ELSGVAPLYKYSLI 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHh-cccc-cCCCCCchhHHhHH
Confidence 344444444445555555566655544 2788999999999988887644332 1122 22234467788889
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc---------ccc
Q 022669 179 AVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---------LSF 249 (294)
Q Consensus 179 gl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e---------~~f 249 (294)
++.+.++-.++..|++|++-+...+.|+.--+-+++...++.++|++..++++.+++..||.+....+ .+.
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 99999999999999999999988888999988889999999999999999999999999999876432 124
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhccc--------cchhhHHHHHhhh
Q 022669 250 NWTGFISAMISNISFTYRSIYSKKAMVI--------FYETLCCSSCKAA 290 (294)
Q Consensus 250 n~~G~ilallS~v~~al~~V~~Kk~l~~--------~~~~n~~a~~l~~ 290 (294)
+.+|+.++..+.+..++-|..++++.++ |.+.|+|..++-+
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~ 218 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNG 218 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887653 4568888776543
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.85 E-value=7.4e-09 Score=94.19 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=119.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHH
Q 022669 135 FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAA 214 (294)
Q Consensus 135 fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~l 214 (294)
|.|.+.+.++|..+..++.-++... +++.++|...-+....+++.|.+.++.+|.++|++|-+...+-|+.-|+-+++
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~i--r~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLI--RKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheee--cccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 7788999999999988876544332 23334454444556788889999999999999999999777779999999999
Q ss_pred HHHHHhcccCChhhHHHHhHhhhhheecccccc-------cccHHHHHHHHHHHHHHHHHHHHHhhhc--------cccc
Q 022669 215 ASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-------SFNWTGFISAMISNISFTYRSIYSKKAM--------VIFY 279 (294)
Q Consensus 215 ls~l~lgek~s~~~~lsllliv~GV~la~~~e~-------~fn~~G~ilallS~v~~al~~V~~Kk~l--------~~~~ 279 (294)
+++++.+++++|++++++++|+.||++..+.|. .--..|=++.++|.-..++....+.+.- +.|.
T Consensus 128 lGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~ 207 (337)
T KOG1580|consen 128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMF 207 (337)
T ss_pred eehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHH
Confidence 999999999999999999999999999987642 1124688888888888888777765532 2367
Q ss_pred hhhHHHHHh
Q 022669 280 ETLCCSSCK 288 (294)
Q Consensus 280 ~~n~~a~~l 288 (294)
++|+|+.+.
T Consensus 208 ~~NlwStL~ 216 (337)
T KOG1580|consen 208 YTNLWSTLY 216 (337)
T ss_pred HHHHHHHHH
Confidence 799997654
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.85 E-value=2.6e-08 Score=95.62 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc-------
Q 022669 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL------- 247 (294)
Q Consensus 175 llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~------- 247 (294)
-+.++.+..+.+.++|.|+.+.+|+..+++.++.-+||..++.++.+||+++.+.+++++.++||++++.+|.
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 3344455667889999999999999999999999999999999999999999999999999999999987632
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHHhhhccccc---hhhHHHHHhhhc
Q 022669 248 -SFNWTGFISAMISNISFTYRSIYSKKAMVIFY---ETLCCSSCKAAA 291 (294)
Q Consensus 248 -~fn~~G~ilallS~v~~al~~V~~Kk~l~~~~---~~n~~a~~l~~~ 291 (294)
+-...|.+++++|++.|+.|.++.||-..+.+ .++.+....|.-
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLf 289 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLF 289 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 23379999999999999999999999877664 277776666643
No 25
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.82 E-value=1.9e-08 Score=81.21 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHH-HhcCC-CC-CCCChHHHHHHHHHHHHHH-HHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHH
Q 022669 143 VIHLLVGVVYCLVSW-AVGLP-KR-APIDSKLLKLLIPVAVCHA-LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 218 (294)
Q Consensus 143 ~~q~~~~~lllli~~-~~g~~-~~-~~ls~~~~~~llpvgl~~~-l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l 218 (294)
.+|++++.+.+.... ..+.. +. +...++.+..++..+++.. .+..+.++++++.+ +....+.+++|+|+++++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 356676666554332 22211 10 1122234555566676654 78899999999999 58889999999999999999
Q ss_pred HhcccCChhhHHHHhHhhhhheeccccccc
Q 022669 219 ILGQQLPLTLWLSLAPVVIGVSMASLTELS 248 (294)
Q Consensus 219 ~lgek~s~~~~lsllliv~GV~la~~~e~~ 248 (294)
++|||++++++.+++++++|+++..++|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999877654
No 26
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.78 E-value=8.6e-08 Score=79.69 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=99.0
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 022669 125 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKR-APIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTH 202 (294)
Q Consensus 125 ~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~-~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~ 202 (294)
.++.|..+++.+ |.+-+.+|-.+...++.... ..|..+. -.++++.|..++.-|+...++..++..+++...+|-..
T Consensus 19 ~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~Vv 97 (140)
T COG2510 19 PIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVV 97 (140)
T ss_pred HHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEE
Confidence 377899999886 99999999998887665443 3332221 13577777777777788888899999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 203 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 203 iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
-+..+.|+++++++.+|+||+++.++|++++++++|+.+.+.
T Consensus 98 Pldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 98 PLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred EcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999988753
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.75 E-value=6e-07 Score=84.13 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=104.2
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHh
Q 022669 128 NKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA 206 (294)
Q Consensus 128 NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iika 206 (294)
.|++. .++.++.. ++.++.++..+.. ..+.++ ..+++.+..-+.-|++...++.+...+++++.++....+-+
T Consensus 20 ~k~~~-g~~~~~~~---~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~ 93 (290)
T TIGR00776 20 NVKIG-GGPYSQTL---GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPIST 93 (290)
T ss_pred HhccC-CCHHHHHH---HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHH
Confidence 35554 45534443 5666666544322 222221 11233344444455668888999999999999999988877
Q ss_pred -hhhHHHHHHHHHHhcccCChhh----HHHHhHhhhhheeccccccc-------cc-HHHHHHHHHHHHHHHHHHHHHhh
Q 022669 207 -LEPFFNAAASQFILGQQLPLTL----WLSLAPVVIGVSMASLTELS-------FN-WTGFISAMISNISFTYRSIYSKK 273 (294)
Q Consensus 207 -l~Pvft~lls~l~lgek~s~~~----~lsllliv~GV~la~~~e~~-------fn-~~G~ilallS~v~~al~~V~~Kk 273 (294)
+.|++..+.+.+++||+.+.++ +++++++++|+.+....+.+ .| ..|+++++++.+++++|.+..|+
T Consensus 94 ~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~ 173 (290)
T TIGR00776 94 GFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKA 173 (290)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999 99999999999997643211 44 68999999999999999999997
Q ss_pred hc
Q 022669 274 AM 275 (294)
Q Consensus 274 ~l 275 (294)
..
T Consensus 174 ~~ 175 (290)
T TIGR00776 174 FG 175 (290)
T ss_pred cC
Confidence 63
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.68 E-value=1.2e-06 Score=79.13 Aligned_cols=116 Identities=21% Similarity=0.115 Sum_probs=89.7
Q ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHH
Q 022669 124 FNILNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCH-ALGHVTSNVSFAAVAVSFT 201 (294)
Q Consensus 124 ~~i~NK~vL~~fp-~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~-~l~~~~~n~sl~~vsvs~~ 201 (294)
+.++.|+..++.+ .+..+..+++.++.+++.+......++ ...+.+++..++..+++. .++..+.+.++++.+++..
T Consensus 143 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 143 GTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 3466888887654 244555578888887665443322122 233566676677777654 6788999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhe
Q 022669 202 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVS 240 (294)
Q Consensus 202 ~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~ 240 (294)
.++..++|++++++++++++|+++..++.+..+++.|+.
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999863
No 29
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.64 E-value=8.2e-08 Score=88.98 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=139.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc--C-CcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 022669 101 FFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNY--F-PYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIP 177 (294)
Q Consensus 101 ~~~~~~~l~~~~~i~~w~~~si~~~i~NK~vL~~--f-p~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llp 177 (294)
..+|+|..|....+...++.-+.+.+...++++. | ||-|.++..|+++=+.+.++-.. ....+++ ...||....
T Consensus 35 ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~-~~~~k~r--~iP~rtY~~ 111 (367)
T KOG1582|consen 35 LSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ-LIQTKRR--VIPWRTYVI 111 (367)
T ss_pred cccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE-eecccce--ecchhHhhh
Confidence 4455555666666666677777777888888885 6 48899999999876554333211 1111111 124777888
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc----ccccHHH
Q 022669 178 VAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE----LSFNWTG 253 (294)
Q Consensus 178 vgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e----~~fn~~G 253 (294)
++.+....+.++|-|+.|.+-+.-.+.|++--+-+++.+.++-|+|+++..+.+..+++.|.++...-| .+||..|
T Consensus 112 la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~G 191 (367)
T KOG1582|consen 112 LAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIG 191 (367)
T ss_pred hHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceee
Confidence 888888889999999999999977778998877778899999999999999999999999999876544 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccch----hhHHHHHhh
Q 022669 254 FISAMISNISFTYRSIYSKKAMVIFYE----TLCCSSCKA 289 (294)
Q Consensus 254 ~ilallS~v~~al~~V~~Kk~l~~~~~----~n~~a~~l~ 289 (294)
+++.-.+.++.++-.=.++|.|+..+. +.+|+..+|
T Consensus 192 v~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG 231 (367)
T KOG1582|consen 192 VMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIG 231 (367)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeeccc
Confidence 999999999999877777777764322 555554443
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.48 E-value=4.7e-06 Score=80.66 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=88.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHh-c-CCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAV-G-LPKR---APIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAV 198 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~-g-~~~~---~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsv 198 (294)
+++..|.....+|.+...++++++++.+.+.+.... . .... ...+...+ .++..+++..+.+++.|+++++++.
T Consensus 204 ~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga 282 (358)
T PLN00411 204 SFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGP 282 (358)
T ss_pred HHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCc
Confidence 346677777778766677888888887765433221 1 1110 01122222 2333444445677889999999999
Q ss_pred hHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 199 SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 199 s~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
+.+.+...++|+|.++++++++||++++.++++.++++.|+.++..
T Consensus 283 ~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 283 LYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred hHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998764
No 31
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.46 E-value=3.5e-06 Score=78.63 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhc-------cCCcHHHHHHHHHHHHHHHHHHHHH-hc-CCCCC-------CC-ChH----HHHHHHHHH
Q 022669 121 NVIFNILNKRIYN-------YFPYPYFVSVIHLLVGVVYCLVSWA-VG-LPKRA-------PI-DSK----LLKLLIPVA 179 (294)
Q Consensus 121 si~~~i~NK~vL~-------~fp~Pl~Lt~~q~~~~~lllli~~~-~g-~~~~~-------~l-s~~----~~~~llpvg 179 (294)
++.-++..||.-+ .|.+|...+ .-|+.|-..|+.... .+ ....+ .+ +++ .....+|.+
T Consensus 15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqa-l~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pa 93 (372)
T KOG3912|consen 15 GSFNTLVAKWADSIQAEGSPGFQHPVLQA-LLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPA 93 (372)
T ss_pred ccHHHHHHHHHHhhhhhCCCccccHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChH
Confidence 3334467788755 177887765 456666655543221 11 11111 11 111 133466788
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc----------cc
Q 022669 180 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL----------SF 249 (294)
Q Consensus 180 l~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~----------~f 249 (294)
+|-..+...-+.++.+.+.|-+|++|....+|+-+++.-+++++++.++|+++..+++|++++...|. +-
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ 173 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSS 173 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccccc
Confidence 99998888899999999999999999999999999999999999999999999999999988765432 22
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 022669 250 NWTGFISAMISNISFTYRSIYSKKAMVIF 278 (294)
Q Consensus 250 n~~G~ilallS~v~~al~~V~~Kk~l~~~ 278 (294)
-..|..+.+++.+.-+.+.++.+|.++..
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~ 202 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKS 202 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 26899999999999999999998877654
No 32
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.43 E-value=1e-05 Score=75.56 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=86.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCH-ALGHVTSNVSFAAVAVSFTH 202 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~-~l~~~~~n~sl~~vsvs~~~ 202 (294)
+++..|+..++.+ |.... ++++++.+.+......... ....+...+...+.++++. .+++.+.|+++++++.+...
T Consensus 163 ~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 163 YILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 3466788776655 66654 5556555554433322111 1123445555556677654 56788999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 203 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 203 iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
++-.++|++.++++++++||+++..++++..++++|++...
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 33
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.39 E-value=1e-05 Score=75.43 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=90.9
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHH
Q 022669 125 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKRAPIDSKLLKLLIPVAVC-HALGHVTSNVSFAAVAVSFTH 202 (294)
Q Consensus 125 ~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~~~ls~~~~~~llpvgl~-~~l~~~~~n~sl~~vsvs~~~ 202 (294)
++.+|+.-. +++...+.+|+.++.+.+.+.. ..+.......+.+.|..++..+++ ..+++.+.+.++++++.+...
T Consensus 166 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s 243 (292)
T PRK11272 166 SVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALAT 243 (292)
T ss_pred HHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 355676543 2356667789988887655433 222111111245567777777765 457788999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc
Q 022669 203 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (294)
Q Consensus 203 iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e 246 (294)
++..++|++.++++++++||+++..++++.++++.|+.+....+
T Consensus 244 ~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 244 SYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876543
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.39 E-value=9.1e-06 Score=75.95 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLV-SWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTH 202 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli-~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~ 202 (294)
+++++|+.-++.+ |.... +.. +.+.+.+ ....+.. ....+.+.|..++..++...+++.+.++++++.+++...
T Consensus 171 ~~v~~k~~~~~~~-~~~~~--~~~-~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s 245 (295)
T PRK11689 171 YCNVTRKYARGKN-GITLF--FIL-TALALWIKYFLSPQP-AMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLA 245 (295)
T ss_pred HHHHHhhccCCCC-chhHH--HHH-HHHHHHHHHHHhcCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4566788765543 65442 222 2332222 2222211 123455666666666666667889999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 203 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 203 iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
++-.++|++.++++++++||+++..+++++++++.|+.+...
T Consensus 246 ~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 246 TASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999877643
No 35
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.35 E-value=2.9e-05 Score=74.34 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccc-----
Q 022669 171 LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT----- 245 (294)
Q Consensus 171 ~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~----- 245 (294)
+..++...+++|++.+-+...++.+.+.+.+|+.-.+-.+.|++++++++++|.++.+|.++++...|+.+....
T Consensus 91 ~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 91 ETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 455677778899998889999999999999999999999999999999999999999999999999999998621
Q ss_pred -----c-ccccHHHHHHHHHHHHHHHHHHHHHhhhccccch----hhHHHHHhhh
Q 022669 246 -----E-LSFNWTGFISAMISNISFTYRSIYSKKAMVIFYE----TLCCSSCKAA 290 (294)
Q Consensus 246 -----e-~~fn~~G~ilallS~v~~al~~V~~Kk~l~~~~~----~n~~a~~l~~ 290 (294)
+ .+-.+.|+...+.++++.++-.+|.+|.+++-.. .|.....+|+
T Consensus 171 ~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~ 225 (345)
T KOG2234|consen 171 GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGI 225 (345)
T ss_pred CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 1224789999999999999999999998875322 5555544443
No 36
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.17 E-value=4.7e-05 Score=61.86 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 180 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 180 l~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
+++.....+...+++.+|++....+-++.++++++++++++||++++.+++++.++++|+.+..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3466778889999999999999999999999999999999999999999999999999998764
No 37
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.15 E-value=1.4e-06 Score=80.73 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=106.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHHHHHH
Q 022669 106 PALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKR-APIDSKLLKLLIPVAVCHAL 184 (294)
Q Consensus 106 ~~l~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~-~~ls~~~~~~llpvgl~~~l 184 (294)
++.......+- |+.|..+.+..|.+.+ .|..+...++++-.+....+.+...... -+-..|.| ++.=|++...
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~t 109 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFT 109 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhh
Confidence 44444444444 6666666455554443 4777777775544443333222111100 01111111 2333667777
Q ss_pred HHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc-----cc---------cccc
Q 022669 185 GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL-----TE---------LSFN 250 (294)
Q Consensus 185 ~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~-----~e---------~~fn 250 (294)
+.....+|++|.|.+=+.+|..++|+|+.++++.++||+++...-++..+.+.||+++.. +| .+-+
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~ 189 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD 189 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence 788888999999999999999999999999999999999999999999999999999863 21 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 022669 251 WTGFISAMISNISFTYRSIYSKKAMVIF 278 (294)
Q Consensus 251 ~~G~ilallS~v~~al~~V~~Kk~l~~~ 278 (294)
..|...++.+.+.-+.--+..++.-++.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~~ 217 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKNA 217 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhccc
Confidence 5677777776666555445455443443
No 38
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.14 E-value=0.0001 Score=68.96 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=87.3
Q ss_pred HHHHHHHHhccCCcH--HHHHHHHHHHHHHHHHHH-HHhcCCC-----CCCCChHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 022669 124 FNILNKRIYNYFPYP--YFVSVIHLLVGVVYCLVS-WAVGLPK-----RAPIDSKLLKLLIPVAVCH-ALGHVTSNVSFA 194 (294)
Q Consensus 124 ~~i~NK~vL~~fp~P--l~Lt~~q~~~~~lllli~-~~~g~~~-----~~~ls~~~~~~llpvgl~~-~l~~~~~n~sl~ 194 (294)
++++.|+..++.+.| .....++++++.+..... +..+.+. ....+.+.|..++.++++. .+++.+.+.+++
T Consensus 158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~ 237 (299)
T PRK11453 158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG 237 (299)
T ss_pred HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677776555433 344455665555433221 2211111 1134566777777888654 467889999999
Q ss_pred ccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 195 AVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 195 ~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
+.+.+...++..++|++..+++++++||+++..++++..++++|+.+...
T Consensus 238 ~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 238 RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987654
No 39
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.12 E-value=8.3e-05 Score=68.63 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=109.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHh
Q 022669 127 LNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA 206 (294)
Q Consensus 127 ~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iika 206 (294)
+.|.++..++ |.-.+.+|..++.++++..++ +.+.+.++++++.+...|++....|.+...|++.+|.+....+..
T Consensus 30 ~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~R---Pwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF 105 (292)
T COG5006 30 FAKSLFPLVG-AAGVTALRLAIAALILLALFR---PWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEF 105 (292)
T ss_pred HHHHHccccC-hhhHHHHHHHHHHHHHHHHhh---HHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Confidence 3578887777 899999999999998776664 333467888999999999988777888888999999999999999
Q ss_pred hhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc---ccccccHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022669 207 LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL---TELSFNWTGFISAMISNISFTYRSIYSKKAMVI 277 (294)
Q Consensus 207 l~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~---~e~~fn~~G~ilallS~v~~al~~V~~Kk~l~~ 277 (294)
+-|+.+.++ ..++..--.| +.+.+.|+.+... +..+.|..|..+++.+..||+.|-+..||.-+.
T Consensus 106 ~GPL~vA~~----~sRr~~d~vw--vaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~ 173 (292)
T COG5006 106 TGPLAVALL----SSRRLRDFVW--VALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRA 173 (292)
T ss_pred ccHHHHHHH----hccchhhHHH--HHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc
Confidence 999976644 3344433445 4455666655432 224578999999999999999999999987643
No 40
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.12 E-value=1.3e-05 Score=74.28 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhee
Q 022669 178 VAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (294)
Q Consensus 178 vgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~l 241 (294)
.++...+++.+.+.++++.+++....+..++|++..+++++++||+++..++++..++++|+.+
T Consensus 217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3345667889999999999999999999999999999999999999999999999999999865
No 41
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.06 E-value=6e-06 Score=73.77 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccc--ccc
Q 022669 171 LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT--ELS 248 (294)
Q Consensus 171 ~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~--e~~ 248 (294)
..+...|.+++.+..++.+-.+++.++.+-.+-+.+..-.|+.+++++.+|+++..-++++.++.+.|+++.++- |..
T Consensus 52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 345677888899999999999999999999999999999999999999999999999999999999999998864 455
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022669 249 FNWTGFISAMISNISFTYRSIYSKKAMVI 277 (294)
Q Consensus 249 fn~~G~ilallS~v~~al~~V~~Kk~l~~ 277 (294)
-++.|+..++.|.+..++|.|..|....+
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999987653
No 42
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.04 E-value=3.7e-05 Score=71.77 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCh---------HH-HHHHHHHHH-HHHHH
Q 022669 120 LNVIFNILNKRIYN--YFPYPYFVSVIHLLVGVVYCLVSWA-VGLPKRAPIDS---------KL-LKLLIPVAV-CHALG 185 (294)
Q Consensus 120 ~si~~~i~NK~vL~--~fp~Pl~Lt~~q~~~~~lllli~~~-~g~~~~~~ls~---------~~-~~~llpvgl-~~~l~ 185 (294)
+...++++.|+..+ +.+ |+.++.+++.++.+.+.+... .+..+....+. .. +...+..++ ++...
T Consensus 156 ~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (302)
T TIGR00817 156 TFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFY 234 (302)
T ss_pred HHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Confidence 33445677888877 554 888999999888877655432 22111000000 00 111112222 23333
Q ss_pred HHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 186 HVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 186 ~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
+.+.+.++++++...+.++-.++|+++++++++++||+++..++++..++++|+.+...
T Consensus 235 ~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 235 QQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45666899999999999999999999999999999999999999999999999988754
No 43
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.03 E-value=5.2e-06 Score=77.29 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=105.3
Q ss_pred HHHHhccCC-cHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHH
Q 022669 128 NKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWA-VGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAA-VAVSFTHTI 204 (294)
Q Consensus 128 NK~vL~~fp-~Pl~Lt~~q~~~~~lllli~~~-~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~-vsvs~~~ii 204 (294)
-..+.++.| .-..+|+.||++-.+--++... .... +++++.++ .+.+..+|...++++|.++++ +|++.+-++
T Consensus 22 lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~-k~kiplk~---Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIf 97 (330)
T KOG1583|consen 22 LELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTV-KPKIPLKD---YAITVAMFFIVNVTNNYALKFNIPMPLHIIF 97 (330)
T ss_pred HHHHHHhCCCCeeehHHHHHHHHHHhceeeecccccc-CCCCchhh---hheehheeeeeeeeccceeeecccceEEEEE
Confidence 455666555 3377888898876664443321 1111 23444433 444555566678899999998 899999999
Q ss_pred HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc---ccc--------------ccc--HHHHHHHHHHHHHHH
Q 022669 205 KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL---TEL--------------SFN--WTGFISAMISNISFT 265 (294)
Q Consensus 205 kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~---~e~--------------~fn--~~G~ilallS~v~~a 265 (294)
|+..++.+++++++++|++++.+++.+++++.+|++++.. .|. ++- ..|+.+...+.+..+
T Consensus 98 Rsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa 177 (330)
T KOG1583|consen 98 RSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSA 177 (330)
T ss_pred ecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999753 111 111 268888888888888
Q ss_pred HHHHHHhhhcc
Q 022669 266 YRSIYSKKAMV 276 (294)
Q Consensus 266 l~~V~~Kk~l~ 276 (294)
.-.+|++...+
T Consensus 178 ~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 178 YMGIYQETTYQ 188 (330)
T ss_pred HHHHHHHHHHH
Confidence 88888765443
No 44
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.99 E-value=0.00022 Score=66.64 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 175 llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
++..++...+.+.+.+.++++.+.+..+.+..++|++..++++++++|+++..+++++.+++.|+.+..
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444455666788999999999999999999999999999999999999999999999999988876653
No 45
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.98 E-value=0.00045 Score=57.53 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHhcc------CCcHHHHHHHHHHHHHHHHHHHHH-hcCCCCC---------CC--ChHHHHHHHH
Q 022669 116 MWYFLNVIFNILNKRIYNY------FPYPYFVSVIHLLVGVVYCLVSWA-VGLPKRA---------PI--DSKLLKLLIP 177 (294)
Q Consensus 116 ~w~~~si~~~i~NK~vL~~------fp~Pl~Lt~~q~~~~~lllli~~~-~g~~~~~---------~l--s~~~~~~llp 177 (294)
.--.+....+++.|+.+++ -..|+.+.......+.+.+.+.+. .+.++.. +. +.+.+..++.
T Consensus 7 ~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T PF03151_consen 7 ASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLIL 86 (153)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHH
Confidence 3344555566777888776 225788877766677766655443 2222100 01 2233445555
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 178 VAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 178 vgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
.+++....+..+.+.+++++.-.++++...-.+++.+++.++++|+++..+++++++.++|+.+.+
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 667777888999999999999999999999999999999999999999999999999999988764
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.84 E-value=0.00095 Score=60.20 Aligned_cols=118 Identities=28% Similarity=0.381 Sum_probs=86.8
Q ss_pred HHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH-HHHHHHHHhhcccchhHH
Q 022669 124 FNILNKRIYNYFPYPYFVSV-IHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHA-LGHVTSNVSFAAVAVSFT 201 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~-~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~-l~~~~~n~sl~~vsvs~~ 201 (294)
+++.+|++. +.+ +..... +++............ .... .+.+.+++..+...+++.. +++.+.+.+++..+++..
T Consensus 169 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 244 (292)
T COG0697 169 YTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFFL-SGFG-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLV 244 (292)
T ss_pred HHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHh-cccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 446677777 333 544444 555522222222222 2111 2445667878888887766 588999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccc
Q 022669 202 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 245 (294)
Q Consensus 202 ~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~ 245 (294)
.++..++|++..++++++++|+++..++++.++++.|+.+....
T Consensus 245 ~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 245 ALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887543
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.74 E-value=0.0016 Score=61.15 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 022669 115 FMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA--VGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVS 192 (294)
Q Consensus 115 ~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~--~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~s 192 (294)
..|..++... ++-|.+ +..| +..+...|.+-+..++.+... ++.++-.. -.++.+.++.+.+ +......||.
T Consensus 14 ~Ay~lwG~lp-~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l--~a~li~~nW~ 87 (293)
T COG2962 14 LAYLLWGLLP-LYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLAL--TALLIGLNWW 87 (293)
T ss_pred HHHHHHHHHH-HHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHH--HHHHHHHHHH
Confidence 3344444433 445544 4466 888888888888776543322 11111000 1222333222221 2223344444
Q ss_pred hcccchhHHHHH-----HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHHHHHH
Q 022669 193 FAAVAVSFTHTI-----KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYR 267 (294)
Q Consensus 193 l~~vsvs~~~ii-----kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~~al~ 267 (294)
+-.-++...|++ -..+|++.++++.+|+|||+++.+++++++..+||..-.+...++.|..+.++ ++|++|
T Consensus 88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la----~sf~~Y 163 (293)
T COG2962 88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA----LSFGLY 163 (293)
T ss_pred HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHH
Confidence 444444444444 34589999999999999999999999999999999998777777888766554 678888
Q ss_pred HHHHhhh
Q 022669 268 SIYSKKA 274 (294)
Q Consensus 268 ~V~~Kk~ 274 (294)
...-|+.
T Consensus 164 gl~RK~~ 170 (293)
T COG2962 164 GLLRKKL 170 (293)
T ss_pred HHHHHhc
Confidence 8877764
No 48
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.65 E-value=0.0012 Score=63.60 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhccCC------cHHHHHHHHHHHHHHHHHHHHH-hcCCC-C-------CCCChHHHHHH----HHHH
Q 022669 119 FLNVIFNILNKRIYNYFP------YPYFVSVIHLLVGVVYCLVSWA-VGLPK-R-------APIDSKLLKLL----IPVA 179 (294)
Q Consensus 119 ~~si~~~i~NK~vL~~fp------~Pl~Lt~~q~~~~~lllli~~~-~g~~~-~-------~~ls~~~~~~l----lpvg 179 (294)
++...++++.|+.+++.+ .+..+..++..++.+++++... ....+ . ...+...+..+ +.-+
T Consensus 204 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~ 283 (350)
T PTZ00343 204 LGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSG 283 (350)
T ss_pred HHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 333456688888887531 2555666667778776655433 21110 0 00111011111 1222
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 180 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 180 l~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
++|.+.+.+...++++++...+++.-.+.|+++.+++++++||+++..++++.+++++|+.+.+
T Consensus 284 l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 3344444444469999999999999999999999999999999999999999999999998754
No 49
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.57 E-value=0.0013 Score=61.60 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH
Q 022669 107 ALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLL---VGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHA 183 (294)
Q Consensus 107 ~l~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~---~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~ 183 (294)
....+....+-|.. +.+.+|+. + .+ |+..+..|.. +++.+...... +. ++.+.+.....+..|+++.
T Consensus 153 Gi~~~l~sg~~y~~---~~~~~~~~-~-~~-~~~~~~~~~~g~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 153 GILLLLMSTIGYLV---YVVVAKAF-G-VD-GLSVLLPQAIGMVIGGIIFNLGHI---LA-KPLKKYAILLNILPGLMWG 222 (290)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHc-C-CC-cceehhHHHHHHHHHHHHHHHHHh---cc-cchHHHHHHHHHHHHHHHH
Confidence 34444444444433 33556765 2 43 7766444443 34433332221 11 1223333344455888888
Q ss_pred HHHHHHHHhhc-ccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhH----HHHhHhhhhheecc
Q 022669 184 LGHVTSNVSFA-AVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGVSMAS 243 (294)
Q Consensus 184 l~~~~~n~sl~-~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~----lsllliv~GV~la~ 243 (294)
+++.+...+.+ +++++.+.++-..+|+...+.+.+++||+.+++++ ++.++++.|+.+..
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 88999999999 99999999999999999999999999999999999 99999999988764
No 50
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.27 E-value=0.0015 Score=54.59 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=61.7
Q ss_pred HHHHHH-HHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHH--HhcccCChhhHHHHhHhhhhheecccc
Q 022669 175 LIPVAV-CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF--ILGQQLPLTLWLSLAPVVIGVSMASLT 245 (294)
Q Consensus 175 llpvgl-~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l--~lgek~s~~~~lsllliv~GV~la~~~ 245 (294)
++..++ ++.++.++-+.+++.++++...-+-+..++++.+.++. ++||++++.++++++++++|+.+....
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 445554 57788889999999999999999999999888888885 799999999999999999999987643
No 51
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.27 E-value=0.0021 Score=53.16 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHH-hhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIK-ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 175 llpvgl~~~l~~~~~n~sl~~vsvs~~~iik-al~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
.+..-+++.++.++-..+++++|++...-+- ..--+.+++.+.+++||++++.+++++.++++|+.+...
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3445567778888889999999999988884 678899999999999999999999999999999988754
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.03 E-value=0.01 Score=48.35 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHh-hhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 175 llpvgl~~~l~~~~~n~sl~~vsvs~~~iika-l~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
.+..-+++.++..+-..+++.+|++...-+=+ .--+.+++.+.+++||++++.+++++.++++|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 34445567778888888999999999877754 457888999999999999999999999999998764
No 53
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.01 E-value=0.0061 Score=49.59 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHh-hhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 177 PVAVCHALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 177 pvgl~~~l~~~~~n~sl~~vsvs~~~iika-l~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
..-+++.++..+-..+++.+|++...-+-+ ..-+.+.+.+++++||++++.+++++.++++|+++...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334566777788888999999999988854 57888899999999999999999999999999988744
No 54
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.99 E-value=0.0083 Score=48.46 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHh-hhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 175 llpvgl~~~l~~~~~n~sl~~vsvs~~~iika-l~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
.+..-+++..+..+-..+++.+|++...-+=+ .--+.+.+.+++++||++++.+++++.++++|++...
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 34445567778888888999999999877754 5688899999999999999999999999999998763
No 55
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.87 E-value=0.013 Score=54.78 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-hhhhHHHHHHHHHHhcccCChhhH----HHHhHhhhhheeccc
Q 022669 170 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIK-ALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGVSMASL 244 (294)
Q Consensus 170 ~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iik-al~Pvft~lls~l~lgek~s~~~~----lsllliv~GV~la~~ 244 (294)
+.+..-+.-|++..++......|++++.+|.+-=+. .+.-+.+.+.+++++||.-+...+ ++++++++|+.+.++
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 566666677899999999999999999998776664 445677899999999999876653 589999999999987
Q ss_pred cccc--------ccHHHHHHHHHHHHHHHHHHHHHhh
Q 022669 245 TELS--------FNWTGFISAMISNISFTYRSIYSKK 273 (294)
Q Consensus 245 ~e~~--------fn~~G~ilallS~v~~al~~V~~Kk 273 (294)
.|.+ ....|+...+++.+.+..|.+.-|.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 1256999999999999999998775
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.78 E-value=0.029 Score=52.65 Aligned_cols=133 Identities=16% Similarity=0.290 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHh---cCC-CCCC---CChHHHHHHHHHHHHHH
Q 022669 112 FFFFMWYFLNVIFNILNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWAV---GLP-KRAP---IDSKLLKLLIPVAVCHA 183 (294)
Q Consensus 112 ~~i~~w~~~si~~~i~NK~vL~~fp-~Pl~Lt~~q~~~~~lllli~~~~---g~~-~~~~---ls~~~~~~llpvgl~~~ 183 (294)
+++.++..+......+.++++++.+ .|+.+..+..+++.++..+.... +.. +..+ ..++.+..++..+++..
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~ 236 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGA 236 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455566777777788999987643 47777777667677655433321 111 1001 11224555666667777
Q ss_pred HHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 184 LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 184 l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
.+..+-+...+..+.-...++..+--+++.+++.+++++++++.+|.++++++.|..+-.+
T Consensus 237 ~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 237 LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 7777667777888888888888888999999999999999999999999999999887654
No 57
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=96.58 E-value=0.00017 Score=66.88 Aligned_cols=152 Identities=8% Similarity=0.010 Sum_probs=107.1
Q ss_pred HHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 022669 125 NILNKRIYNY-FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT 203 (294)
Q Consensus 125 ~i~NK~vL~~-fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~i 203 (294)
++.+.++-+. .+-|..-+++.+..-.++--.....+. +.-+..|++.+.+++...-++.+-..+.||.+..-.+.
T Consensus 34 a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~----~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~l 109 (336)
T KOG2766|consen 34 AFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR----KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIML 109 (336)
T ss_pred hhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh----HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHH
Confidence 3455565554 556766665544432222212222221 12233577778888877777777778999999999999
Q ss_pred HHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc-------ccc-HHHHHHHHHHHHHHHHHHHHHhhhc
Q 022669 204 IKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-------SFN-WTGFISAMISNISFTYRSIYSKKAM 275 (294)
Q Consensus 204 ikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~-------~fn-~~G~ilallS~v~~al~~V~~Kk~l 275 (294)
+..-..+-+++++++|++.|+.+.++.+++..++||.+.+..|. ..| .+|.+++++++-+++..|+..+.+.
T Consensus 110 LDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv 189 (336)
T KOG2766|consen 110 LDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV 189 (336)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence 98887777899999999999999999999999999999876542 122 5788888888888888888776666
Q ss_pred cccch
Q 022669 276 VIFYE 280 (294)
Q Consensus 276 ~~~~~ 280 (294)
++.|-
T Consensus 190 kn~d~ 194 (336)
T KOG2766|consen 190 KNADR 194 (336)
T ss_pred hcCcH
Confidence 55554
No 58
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0097 Score=48.19 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHh-hhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 175 llpvgl~~~l~~~~~n~sl~~vsvs~~~iika-l~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
.+..-+++..+..+-..+++++|++...-+=+ .--+.+++.+++++||+.+..+++++.++++|++..-
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 34444567778888889999999998877744 4578899999999999999999999999999987653
No 59
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.38 E-value=0.03 Score=43.90 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHhHh
Q 022669 180 VCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPV 235 (294)
Q Consensus 180 l~~~l~~~~~n~sl~~vsvs~~~ii-kal~Pvft~lls~l~lgek~s~~~~lsllli 235 (294)
.++..+..+...+++++|++...-+ .....+.+.+++.+++||+++..+++++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 4677888899999999999998766 4578999999999999999999999988764
No 60
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.12 E-value=0.15 Score=47.43 Aligned_cols=115 Identities=25% Similarity=0.286 Sum_probs=76.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCH-ALGHVTSNVSFAAVAVSFTH 202 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvgl~~-~l~~~~~n~sl~~vsvs~~~ 202 (294)
|++..|.+=+.-+-+-.+ ..-|.++.++.+..-... -...-.+++-...-+-++++. .+-+.+..++++..|-+.+.
T Consensus 163 YIv~G~r~g~~~~g~~g~-a~gm~vAaviv~Pig~~~-ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~ 240 (292)
T COG5006 163 YIVLGQRAGRAEHGTAGV-AVGMLVAALIVLPIGAAQ-AGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFG 240 (292)
T ss_pred HHHHcchhcccCCCchHH-HHHHHHHHHHHhhhhhhh-cchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHH
Confidence 334455555443434444 456666666544432210 000112333333333445554 34578899999999999999
Q ss_pred HHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhe
Q 022669 203 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVS 240 (294)
Q Consensus 203 iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~ 240 (294)
++-+++|.+.++.++++++|.++..+|+++..++.+.+
T Consensus 241 ~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987765
No 61
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.00 E-value=0.27 Score=46.51 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 170 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 170 ~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
+.+..++..|...++-..+...+-+.+|.|...++...+|....+++.+++||.++..++.+-+++-+|+++.+.
T Consensus 209 ~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 209 SLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345556667788888889999999999999999999999999999999999999999999998888888877653
No 62
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.85 E-value=0.28 Score=47.37 Aligned_cols=122 Identities=19% Similarity=0.277 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKRAPI--DSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSF 200 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~~~l--s~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~ 200 (294)
.+++.|+..++.|-...+ ..-=+++.++..+.. .....+-++. +.+.+..++--+++....+.+....++..+..+
T Consensus 183 ~nV~~E~~v~~~~~~~~l-g~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 183 SNVLEEKLVKKAPRVEFL-GMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF 261 (334)
T ss_pred HHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence 346678888876633333 222223333332211 1221221222 333322222223333334445577788887777
Q ss_pred HHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc
Q 022669 201 THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (294)
Q Consensus 201 ~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e 246 (294)
..+=-.+..++.++++.++.|+++++..+++.+++++|+++....|
T Consensus 262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 7777777899999999999999999999999999999999986543
No 63
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.83 E-value=0.12 Score=45.98 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhee
Q 022669 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (294)
Q Consensus 176 lpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~l 241 (294)
..+.++..++..+.++.+++.+.....++.++.++++.+++.++++++++..++++..+++.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 344456667777888999999999999999999999999999999999999999999999999765
No 64
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.76 E-value=0.024 Score=50.60 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=67.0
Q ss_pred cchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecccccc---------------------------c
Q 022669 196 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------------------------S 248 (294)
Q Consensus 196 vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~---------------------------~ 248 (294)
++++.....|+..++++++....+.+++++..++++.+++..|+.....+|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5778888899999999999999999999999999999999999875322111 1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 022669 249 FNWTGFISAMISNISFTYRSIYSKKAMVIF 278 (294)
Q Consensus 249 fn~~G~ilallS~v~~al~~V~~Kk~l~~~ 278 (294)
..+.|....+.+.++.++..+++++.+++.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 236788888888899999999998877654
No 65
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.66 E-value=0.04 Score=45.14 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 172 LKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 172 ~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~ii-kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
|+..+|..+-.+ +.+...+.+...++|.+.-+ .++.=+||++.++++.+|..+++.+++++++++|+.+.
T Consensus 42 ~~y~ipf~lNq~-GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQS-GSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 555666665444 45556778888888888877 58899999999988888888999999999999999875
No 66
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.51 E-value=0.031 Score=53.01 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=62.1
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 174 LLIPVAV-CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 174 ~llpvgl-~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
.....|+ ++.++...+..|+.+.|.+..+-+-+..-++.++++.+++||++++..+.+..+++.|..+..
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 3455664 456788899999999999999999999999999999999999999999999999999987754
No 67
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.02 E-value=0.93 Score=38.14 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=79.4
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 022669 125 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLP-KRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT 203 (294)
Q Consensus 125 ~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~-~~~~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~i 203 (294)
...|-.+-++..+|+.-+.+-+..+.+.+.+.+....+ +.....+..|+.+ .=|++......+.+++...+.++.+.+
T Consensus 17 ~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~-lGG~lG~~~V~~~~~~vp~lG~~~~~~ 95 (138)
T PF04657_consen 17 AAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAY-LGGLLGVFFVLSNIILVPRLGAALTTI 95 (138)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHh-ccHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 35566665555569999999999999877665543222 2111221223222 245777777888888999998888776
Q ss_pred HH-hhhhHHHHHHHHH----HhcccCChhhHHHHhHhhhhhee
Q 022669 204 IK-ALEPFFNAAASQF----ILGQQLPLTLWLSLAPVVIGVSM 241 (294)
Q Consensus 204 ik-al~Pvft~lls~l----~lgek~s~~~~lsllliv~GV~l 241 (294)
+- ...-+..++++.+ .-++++++.++++++++++|+.+
T Consensus 96 l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 96 LIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 64 3456667777775 35778899999999999999864
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.62 E-value=0.78 Score=44.53 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhhhHHHHHHHHHHhcccC---C----hhhHHHHhHhhhhh
Q 022669 168 DSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQL---P----LTLWLSLAPVVIGV 239 (294)
Q Consensus 168 s~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~ii-kal~Pvft~lls~l~lgek~---s----~~~~lsllliv~GV 239 (294)
+.+.+..-+.-|++..+++.+...+++++.+|...-+ -.+.-++..++..++++|-. + .....+++++++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 4445555666778889999999999999999988766 45567888888888888654 2 23578899999999
Q ss_pred eeccc----ccc--------ccc-HHHHHHHHHHHHHHHHHHH
Q 022669 240 SMASL----TEL--------SFN-WTGFISAMISNISFTYRSI 269 (294)
Q Consensus 240 ~la~~----~e~--------~fn-~~G~ilallS~v~~al~~V 269 (294)
++.+. .|. ++| .+|+++++++.+.++.++.
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 99876 433 233 5899999999999999994
No 69
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=94.28 E-value=1.5 Score=39.72 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHH
Q 022669 170 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFI 219 (294)
Q Consensus 170 ~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~ 219 (294)
++|..++..+++..+++.+.+.++++++.+...++..++|++.++++.+.
T Consensus 206 ~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 206 PIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777787777889999999999999999999999999999998764
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.23 E-value=1.4 Score=41.47 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhh----HHHHhHhhhhhee
Q 022669 174 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTL----WLSLAPVVIGVSM 241 (294)
Q Consensus 174 ~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~----~lsllliv~GV~l 241 (294)
+-+.-|+++.+++.+...|.+.+-+...-.+..+..+...+-+.+++||+-++++ +++++++++|.++
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3467789999999999999999999999999999999999999999999988774 4566666666543
No 71
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=93.04 E-value=0.11 Score=48.95 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=64.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 166 PIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 166 ~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
+-.++||..+.-+|++..++..+-..++|.=-++=..+.+.+.-+|..+...+|+|+.+++..|.+++.++...+.+
T Consensus 247 P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 247 PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 34566777778889998888888889998877777778999999999999999999999999998887776654443
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.18 E-value=14 Score=31.73 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=70.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC--hH-HHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 022669 124 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPID--SK-LLKLLIPVAVCHALGHVTSNVSFAAVAVSF 200 (294)
Q Consensus 124 ~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls--~~-~~~~llpvgl~~~l~~~~~n~sl~~vsvs~ 200 (294)
.+-.|-.+-+....|+.-+.+.+.+|.+.+.+....+ .+.++.+ .+ .|+ ...-|++.......+......+-+..
T Consensus 20 Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pwW-~~~GG~lGa~~vt~s~~l~p~lGa~~ 97 (150)
T COG3238 20 QAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPWW-AWIGGLLGAIFVTSSILLAPRLGAAT 97 (150)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCchH-HHHccchhhhhhhhhHHhccchhHHH
Confidence 3456666666666799999999999888765544332 2222222 11 232 22333444444444444555555554
Q ss_pred HHHH-HhhhhHHHHHHHHHHh----cccCChhhHHHHhHhhhhheecc
Q 022669 201 THTI-KALEPFFNAAASQFIL----GQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 201 ~~ii-kal~Pvft~lls~l~l----gek~s~~~~lsllliv~GV~la~ 243 (294)
++++ -+..-+.-++++.+=. +++++..++++++++++|+.+..
T Consensus 98 t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 98 TIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4443 4555666666665433 36789999999999999966553
No 73
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.82 E-value=6.4 Score=37.74 Aligned_cols=129 Identities=15% Similarity=0.224 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHh-c-CCC---CCCCChHHHHHHHHHHHHHHHH
Q 022669 112 FFFFMWYFLNVIFNILNKRIYNYFP-YPYFVSVIHLLVGVVYCLVSWAV-G-LPK---RAPIDSKLLKLLIPVAVCHALG 185 (294)
Q Consensus 112 ~~i~~w~~~si~~~i~NK~vL~~fp-~Pl~Lt~~q~~~~~lllli~~~~-g-~~~---~~~ls~~~~~~llpvgl~~~l~ 185 (294)
.++..+.+.-...+-..+.+++++. .++.+.+.-.++..++.....+. + ..+ ..+.+++.++.++..+++.+++
T Consensus 175 ~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavG 254 (327)
T KOG1581|consen 175 LLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVG 254 (327)
T ss_pred HHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhh
Confidence 4444555555555566777777643 23333333223333332222111 1 111 0122455678888999998887
Q ss_pred HHHHHHhh-cccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhee
Q 022669 186 HVTSNVSF-AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (294)
Q Consensus 186 ~~~~n~sl-~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~l 241 (294)
..+-...+ ++.|+.++ +|..+==++..+++.+..+.+.++.+|.++..+++|+.+
T Consensus 255 Q~FI~~TI~~FGslt~t-~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 255 QLFIFYTIERFGSLTFT-TIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hheehhhHhhcccHHHH-HHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 76544444 45666665 555556788889999999999999999999888888755
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.46 E-value=0.54 Score=45.11 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=61.3
Q ss_pred HHHHHH-HHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 175 LIPVAV-CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 175 llpvgl-~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
+...|+ .+.++-..+..|+.+.|.++.+-+-++.-++.++++..+++|++++.-.+++++.++|-.+.+
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 445664 467788999999999999999999999999999999999999999999999999999976654
No 75
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=87.35 E-value=23 Score=32.44 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHhc-CCC--CCCCChH-HHHHHHHHHHHHHHHH
Q 022669 112 FFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLV-SWAVG-LPK--RAPIDSK-LLKLLIPVAVCHALGH 186 (294)
Q Consensus 112 ~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli-~~~~g-~~~--~~~ls~~-~~~~llpvgl~~~l~~ 186 (294)
..+++-.+++..-.+++.+++++-+.|+..--.|+.+.++.+.. ....+ ..+ +...-+. ++. ...+-+.++.+-
T Consensus 117 ~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~-~~~~i~~~a~gG 195 (244)
T PF04142_consen 117 LAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW-VWIVIFLQAIGG 195 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH-HHHHHHHHHHhh
Confidence 44444455666677899999997655777767787766665432 22111 111 1111011 111 223334566665
Q ss_pred HHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHh
Q 022669 187 VTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLA 233 (294)
Q Consensus 187 ~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsll 233 (294)
.....-++|..-=.-....+..-+++.+++.++++.+++....++..
T Consensus 196 llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 196 LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 66677888887666667778889999999999999999988776644
No 76
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=85.86 E-value=2.3 Score=40.90 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHH-HHHHhcCCCCC------CCChHHHHHHHHHHH
Q 022669 112 FFFFMWYFLNVIFNILNKRIYNY----FPYPYFVSVIHLLVGVVYCL-VSWAVGLPKRA------PIDSKLLKLLIPVAV 180 (294)
Q Consensus 112 ~~i~~w~~~si~~~i~NK~vL~~----fp~Pl~Lt~~q~~~~~llll-i~~~~g~~~~~------~ls~~~~~~llpvgl 180 (294)
.+...+......-+++.|.++.+ .+ ++.+..++--++.+.++ +.+.....+.. +.+.+. ...+..++
T Consensus 166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv 243 (316)
T KOG1441|consen 166 ISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF-LILLLNSV 243 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh-HHHHHHHH
Confidence 44555666667778999999852 54 77776666666666666 44443222211 112222 22333345
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 181 CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 181 ~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
+....+....+.+..++.=.+++....-=+++...++++++++.++...++.++.++|+.+..
T Consensus 244 ~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 244 LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 555566667777888877777777666666667778888888888889999999999988765
No 77
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=82.92 E-value=9.3 Score=35.39 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHH-HhcCCCCC----CCChHHHHHHHHHHHHHHHHHHHH
Q 022669 117 WYFLNVIFNILNKRIYN--YFPYPYFVSVIHLLVGVVYCLVSW-AVGLPKRA----PIDSKLLKLLIPVAVCHALGHVTS 189 (294)
Q Consensus 117 w~~~si~~~i~NK~vL~--~fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~~~----~ls~~~~~~llpvgl~~~l~~~~~ 189 (294)
.+..+..+.+..|+..+ +|. -..-..+..+.+..+++.+- ........ ..+.+.....++-|++.....+++
T Consensus 163 NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s 241 (309)
T COG5070 163 NCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS 241 (309)
T ss_pred hhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc
Confidence 33444455555566544 454 22223456666665544332 22211111 233344556667778877777889
Q ss_pred HHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhh
Q 022669 190 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIG 238 (294)
Q Consensus 190 n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~G 238 (294)
-|+++..+...+.++.+++-.-..+.+.+++++..++..+.++++....
T Consensus 242 aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 242 AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999777888899999999998888886665543
No 78
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=79.69 E-value=23 Score=34.47 Aligned_cols=127 Identities=19% Similarity=0.275 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHH-hcCCCCC----CCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-hhhhHHHHHHHHH
Q 022669 145 HLLVGVVYCLVSWA-VGLPKRA----PIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIK-ALEPFFNAAASQF 218 (294)
Q Consensus 145 q~~~~~lllli~~~-~g~~~~~----~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iik-al~Pvft~lls~l 218 (294)
|-++++++.-..+. ...|+.. ..+.+.+......|++..++..+.-.+++|+-+|+.+-|- .+.-++-.++-.+
T Consensus 41 ~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi 120 (344)
T PF06379_consen 41 QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPI 120 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHH
Confidence 66777765533322 1223211 1233456666778888888888888899998888776552 2222222233223
Q ss_pred Hhc-------ccCChhhHHHHhHhhhhheeccc----cc-------ccccH-HHHHHHHHHHHHHHHHHHHH
Q 022669 219 ILG-------QQLPLTLWLSLAPVVIGVSMASL----TE-------LSFNW-TGFISAMISNISFTYRSIYS 271 (294)
Q Consensus 219 ~lg-------ek~s~~~~lsllliv~GV~la~~----~e-------~~fn~-~G~ilallS~v~~al~~V~~ 271 (294)
+.+ +.-....++++++.++|+++... .| .+||+ +|.+++++|-+..+..++-.
T Consensus 121 ~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 121 FQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred HcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 322 22234578899999999988753 11 24554 79999999999999888753
No 79
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.84 E-value=17 Score=34.97 Aligned_cols=132 Identities=10% Similarity=0.003 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHH-HhcCCC-----CCCCChHHHHHHHHHH-HH
Q 022669 111 GFFFFMWYFLNVIFNILNKRIYNY--FPYPYFVSVIHLLVGVVYCLVSW-AVGLPK-----RAPIDSKLLKLLIPVA-VC 181 (294)
Q Consensus 111 ~~~i~~w~~~si~~~i~NK~vL~~--fp~Pl~Lt~~q~~~~~lllli~~-~~g~~~-----~~~ls~~~~~~llpvg-l~ 181 (294)
..|..........+..+.|+..+. +. =+-+..+..+.......+.+ ..+..+ ............+.++ ++
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence 467777778888888999999884 21 12222334444444333322 222111 0011111222334444 44
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 182 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 182 ~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
..+-.+++.++.+..|.-.+++.....-..+.+...++.++.+++....++.+.++|-++..
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 45556889999999998888888866666677777777788888888888888887766654
No 80
>PRK13499 rhamnose-proton symporter; Provisional
Probab=75.56 E-value=83 Score=30.66 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHH---HHhhhhHHHHHHHHHHhcccCC------hhhHHHHhHhhhhheecccc
Q 022669 176 IPVAVCHALGHVTSNVSFAAVAVSFTHT---IKALEPFFNAAASQFILGQQLP------LTLWLSLAPVVIGVSMASLT 245 (294)
Q Consensus 176 lpvgl~~~l~~~~~n~sl~~vsvs~~~i---ikal~Pvft~lls~l~lgek~s------~~~~lsllliv~GV~la~~~ 245 (294)
..-|++..+++.++.++-+.+.+...-+ +.-...+.+.-+.=+++||+-+ +..+++++++++|..+...+
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 4445677788888888888775554444 5534444444443346888866 44577888888887776543
No 81
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=73.49 E-value=7.8 Score=36.16 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhee
Q 022669 171 LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (294)
Q Consensus 171 ~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~l 241 (294)
.|..+..++++.+++.++-.....+-..=...++..+--+|+.+.++++++..++.++|++..+++.|...
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 46677888888888877666555444333344556666789999999999999999999999999888654
No 82
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=58.52 E-value=14 Score=30.25 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 172 LKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 172 ~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~ii-kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
|..++|..+=.+ +..++.+-++..+.+.+.-+ .+++-.|+.+++..+..|......+++..++++|+.+.
T Consensus 53 w~Y~iPFllNqc-gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 53 WEYLIPFLLNQC-GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 445566655433 34455666777666655433 56678889999987655555677889999999998765
No 83
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=56.89 E-value=24 Score=34.86 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=35.5
Q ss_pred HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccccc
Q 022669 205 KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS 248 (294)
Q Consensus 205 kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~ 248 (294)
-+++....++...++.++.+++..+++-+++++|.+++.+.+..
T Consensus 351 mSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 351 MSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred eeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 44554456888999999999999999999999999888765433
No 84
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=56.45 E-value=1.6e+02 Score=26.93 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHH---HHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 170 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFN---AAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 170 ~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft---~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
..+...+|+-+|.+.-..........+++|..++=+.+.-+|. .+.+.++.+.+.+.+..++-++++.|....
T Consensus 100 t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~GlyfL 175 (224)
T PF09930_consen 100 TFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGLYFL 175 (224)
T ss_pred chhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 3566677888887655554455556667776666555544432 223444455565777788888888886543
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=53.76 E-value=9.7 Score=35.68 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhH----HHHhHhhhhhee
Q 022669 170 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGVSM 241 (294)
Q Consensus 170 ~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~----lsllliv~GV~l 241 (294)
++-..-+..|+.+..++.+...|-+.+-+...-.+..+.-+...+-+-+++|||-+.+++ .++++++.|..+
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 344445677889988888888888877666544444555555566677889999888764 455555555444
No 86
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.58 E-value=26 Score=33.46 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCC-ChHHHHHHHHHHH
Q 022669 109 VTGFFFFMWYFLNVIFN-ILNKRIYNYF-PYPYFVSVIHLLVGVVYCLVSWA-VGL----PKRAPI-DSKLLKLLIPVAV 180 (294)
Q Consensus 109 ~~~~~i~~w~~~si~~~-i~NK~vL~~f-p~Pl~Lt~~q~~~~~lllli~~~-~g~----~~~~~l-s~~~~~~llpvgl 180 (294)
.++..+.+|-.+...++ ++.|+.+... +.=|-++++..+.+.++.+.... .|. ...+.. +.+.|..+..-|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 46666677766666554 7788777642 34578888888888776655443 221 111122 3445554444456
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHhhh-hHHHHHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 181 CHALGHVTSNVSFAAVAVSFTHTIKALE-PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 181 ~~~l~~~~~n~sl~~vsvs~~~iikal~-Pvft~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
+...-.+.+.+-++. +.+.+|.|..+. -..-.+++..+++|.-+..-|-+-+++.+|-.+.
T Consensus 264 fgF~mgyvTg~QIK~-TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~Y 325 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKV-TSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAY 325 (347)
T ss_pred HHHHhhheeeEEEEe-cccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHH
Confidence 543322333334444 445555553332 3444567888999998888888877777775543
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=51.71 E-value=11 Score=35.43 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=73.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHh-hhhHHHHHHHHHHhcccCChhh----HHHHhHhhhhhe
Q 022669 166 PIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTL----WLSLAPVVIGVS 240 (294)
Q Consensus 166 ~ls~~~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iika-l~Pvft~lls~l~lgek~s~~~----~lsllliv~GV~ 240 (294)
..+.+.+.--+.-|++...+...+.-+++++.+|-+--+.+ +.-+-+.+++++.++|..+..+ ..+++++++|+.
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 45555554445556778888888999999999887755533 3466677889999999987665 478999999999
Q ss_pred ecccccc--------cccHHHHHHHHHHHHHHHHHHHHHh
Q 022669 241 MASLTEL--------SFNWTGFISAMISNISFTYRSIYSK 272 (294)
Q Consensus 241 la~~~e~--------~fn~~G~ilallS~v~~al~~V~~K 272 (294)
+.++.|. +..-.|+...+.|.+-|..|.+..+
T Consensus 133 lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~ 172 (288)
T COG4975 133 LTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQ 172 (288)
T ss_pred EeeeeccccccccChHhhhhheeeeeeeccceeeeEeeec
Confidence 9987653 1112465555555555555554433
No 88
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=51.65 E-value=32 Score=28.85 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccCC-cHHHHHHHH
Q 022669 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNYFP-YPYFVSVIH 145 (294)
Q Consensus 105 ~~~l~~~~~i~~w~~~si~~~i~NK~vL~~fp-~Pl~Lt~~q 145 (294)
.+.+.+.++.+++.+.++.-.++-|..+..++ ||++++.+.
T Consensus 53 ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlT 94 (130)
T PF08627_consen 53 KENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLT 94 (130)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhc
Confidence 45678888888888888877788888888765 899887663
No 89
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=38.42 E-value=2.2e+02 Score=23.22 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHhhhh----HHHHHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 182 HALGHVTSNVSFAAVAVSFTHTIKALEP----FFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 182 ~~l~~~~~n~sl~~vsvs~~~iikal~P----vft~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
|+...-.+-++.+.-+.. | +|...- ...+.++.+++||++++....+.+.++++|..+
T Consensus 45 Y~l~VPANRiG~~~~s~~--Q-LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLA--Q-LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHH--H-HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 344444455555543332 2 233222 223567888999999999999988888887653
No 90
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=33.56 E-value=3.4e+02 Score=23.94 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc----C--CcHHHHHHHHHHHHHHHHHHHH
Q 022669 108 LVTGFFFFMWYFLNVIFNILNKRIYNY----F--PYPYFVSVIHLLVGVVYCLVSW 157 (294)
Q Consensus 108 l~~~~~i~~w~~~si~~~i~NK~vL~~----f--p~Pl~Lt~~q~~~~~lllli~~ 157 (294)
.....|...|+..+....+.--.+++. . ..+.....+|...|.+++.+.+
T Consensus 29 ~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~ 84 (214)
T PF11139_consen 29 RNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAV 84 (214)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHH
Confidence 345677777777776655444444443 1 1255666789999988765543
No 91
>COG4420 Predicted membrane protein [Function unknown]
Probab=30.87 E-value=98 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.656 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 022669 109 VTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVV 151 (294)
Q Consensus 109 ~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~l 151 (294)
.-.+++++|++.|+.. |-...-.|||+.+ ++++++..
T Consensus 63 ~~~~~ll~Wi~lNl~~----~~~~~wDpyPFi~--LnLllS~~ 99 (191)
T COG4420 63 TFTLLLLLWIVLNLFL----VPGLAWDPYPFIL--LNLLLSTL 99 (191)
T ss_pred HHHHHHHHHHHHHHhh----hcCCcCCCccHHH--HHHHHHHH
Confidence 3446667788887655 3334446788665 45555544
No 92
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=28.33 E-value=3.2e+02 Score=22.01 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 022669 137 YPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVA 179 (294)
Q Consensus 137 ~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~ls~~~~~~llpvg 179 (294)
+|..+...=..++.+.+.-....+..+.+..++.++++.....
T Consensus 37 fP~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (141)
T PF07331_consen 37 FPRLLGILLLILSLLLLVRSFRGPDEDEEPFDRVDWKRVLLVL 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHH
Confidence 5777665544444443322222222223344555666544443
No 93
>COG5373 Predicted membrane protein [Function unknown]
Probab=26.44 E-value=9.1e+02 Score=26.68 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcc--CCcHHH
Q 022669 122 VIFNILNKRIYNY--FPYPYF 140 (294)
Q Consensus 122 i~~~i~NK~vL~~--fp~Pl~ 140 (294)
.+-.++-||-.+. |+ |-.
T Consensus 145 lG~~FLlkY~~E~gl~~-p~v 164 (931)
T COG5373 145 LGGAFLLKYAIEAGLFG-PEV 164 (931)
T ss_pred HHHHHHHHHHHHcCCCC-hhH
Confidence 4445788999886 66 533
No 94
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=24.83 E-value=6.7e+02 Score=24.58 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-HH-HHHhcCCCCCCCChH-----HHHHHHHHHHHHHHHHHHH
Q 022669 117 WYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYC-LV-SWAVGLPKRAPIDSK-----LLKLLIPVAVCHALGHVTS 189 (294)
Q Consensus 117 w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lll-li-~~~~g~~~~~~ls~~-----~~~~llpvgl~~~l~~~~~ 189 (294)
-+.+|..-.++..++++.-..++-+--+|+-+-++++ ++ ++.....+ +.+. +=.....+-+.++.+-.+.
T Consensus 191 ~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~---i~~~gff~G~s~~vw~vVl~~a~gGLlv 267 (345)
T KOG2234|consen 191 ACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEA---INEYGFFYGYSSIVWLVVLLNAVGGLLV 267 (345)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccc---cccCCccccccHHHHHHHHHHhccchhH
Confidence 3455555567888999765546555556665544433 32 22221111 1111 0011222333444444555
Q ss_pred HHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheecc
Q 022669 190 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 243 (294)
Q Consensus 190 n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~ 243 (294)
.+-++|..-=+-....+...+++.+.+..+++.+++..-.++..+++..+.+..
T Consensus 268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 268 SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 556666654444444567788999999888898898888888877777776654
No 95
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=24.11 E-value=3.8e+02 Score=25.80 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccccccc
Q 022669 208 EPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFN 250 (294)
Q Consensus 208 ~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e~~fn 250 (294)
--..|.++|++++.+.++....-+.++++.|+.+-.+.+.+-+
T Consensus 296 RKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~ 338 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKI 338 (367)
T ss_pred HhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCC
Confidence 3456778899999999999888899999999999877665433
No 96
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.26 E-value=4.1e+02 Score=21.55 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHHHHhcccCChhhHHHHhHhhhhheec
Q 022669 213 AAASQFILGQQLPLTLWLSLAPVVIGVSMA 242 (294)
Q Consensus 213 ~lls~l~lgek~s~~~~lsllliv~GV~la 242 (294)
+.++.++++|.+.+..+.+-..+.+|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 457889999999999999888888887654
No 97
>PTZ00358 hypothetical protein; Provisional
Probab=20.55 E-value=8.2e+02 Score=24.06 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHHHHHHHH
Q 022669 108 LVTGFFFFMWYFLNVI-FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPK--RAPIDSKLLKLLIPVAVCHAL 184 (294)
Q Consensus 108 l~~~~~i~~w~~~si~-~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~--~~~ls~~~~~~llpvgl~~~l 184 (294)
-.++..+++|..+-.. .....+. .+++.....+...+-+-..++...+|..+... ..|++|-.|..++.+.++...
T Consensus 6 cttivlvllwL~lccqalg~l~~l-i~~~~~~~v~~ttttlst~ll~vcLwqCkkagYLvsPmTwyHW~llvlLvllqv~ 84 (367)
T PTZ00358 6 CTTIVLVLLWLYLCCQALGSLVAL-IDEYSTTPVLPTTTTLSTVLLGVCLWQCKKAGYLVSPMTWYHWVLLVLLVLLQVV 84 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhccCceeeehhhHHHHHHHHHHHHHhcccCeecCCchHHHHHHHHHHHHHHHH
Confidence 3455666666554432 2222322 33332222222333333333334456543211 236788778877778888888
Q ss_pred HHHHHHHhhcccchhHHHHHHhhhhHHHH
Q 022669 185 GHVTSNVSFAAVAVSFTHTIKALEPFFNA 213 (294)
Q Consensus 185 ~~~~~n~sl~~vsvs~~~iikal~Pvft~ 213 (294)
..++.....+-. .+-..-.++.-|+.-+
T Consensus 85 avv~e~~~~~~~-~~~~~~~~~~ypIYgi 112 (367)
T PTZ00358 85 AVVLEYLELQGW-LSVSLGIKWTYPIYGI 112 (367)
T ss_pred HHHHHHhhhcch-hhhhhcCCcCCchHHH
Confidence 888766665544 4445556677777543
Done!