Query 022669
Match_columns 294
No_of_seqs 182 out of 1257
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 4.8E-06 1.6E-10 66.2 9.6 68 179-246 37-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 4.5E-06 1.6E-10 69.2 7.2 66 179-244 37-103 (137)
3 4dve_A Biotin transporter BIOY 9.1 7.1E+02 0.024 20.9 6.5 77 166-244 10-87 (198)
4 2nr1_A NR1 M2, M2; receptor, s 3.0 8.4E+02 0.029 14.1 2.1 14 112-125 9-22 (27)
5 3b9w_A Ammonium transporter fa 3.0 2.6E+03 0.09 19.3 9.4 21 209-229 219-239 (407)
6 3rlf_F Maltose transport syste 3.0 2.4E+03 0.081 20.0 6.7 63 173-241 15-77 (514)
7 2jo1_A Phospholemman; FXYD1, N 2.9 1.3E+03 0.044 16.4 3.5 16 99-114 7-22 (72)
8 1xkm_A Distinctin chain A; por 2.8 6.8E+02 0.023 14.0 1.5 13 195-207 4-16 (26)
9 1h2m_S Hypoxia-inducible facto 2.5 5.2E+02 0.018 17.3 0.9 26 1-27 4-29 (52)
10 2kv5_A FST, putative uncharact 2.4 4.2E+02 0.014 16.2 0.3 10 232-241 9-18 (33)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=4.8e-06 Score=66.24 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccccc
Q 022669 179 AVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (294)
Q Consensus 179 gl~~~l~~~~~n~sl~~vsvs~~~ii-kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~~e 246 (294)
.+++.++..+.+.+++++|++....+ ..+.|+++.+++++++||++++.+++++.++++|+.+....+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677888889999999999999888 899999999999999999999999999999999998876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.14 E-value=4.5e-06 Score=69.22 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH-HhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 179 AVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 179 gl~~~l~~~~~n~sl~~vsvs~~~ii-kal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
.+++.++.++.+.++++++++....+ ..+.|+++++++++++||++++.++++++++++|+.+...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34677888999999999999998888 8999999999999999999999999999999999998754
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=9.09 E-value=7.1e+02 Score=20.90 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=40.5
Q ss_pred CCChH-HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhheeccc
Q 022669 166 PIDSK-LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (294)
Q Consensus 166 ~ls~~-~~~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~la~~ 244 (294)
.++++ ..|.+..++++-++..++...+ .+|+++.-+=-++..+++++.+.++..++=.....+=+++..+|+=+.+.
T Consensus 10 am~~~~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFag 87 (198)
T 4dve_A 10 AMTNNQKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTG 87 (198)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTT
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccC
Confidence 45543 5677777777766555555432 23333222223466677666666554333334444446667777655543
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=3.02 E-value=8.4e+02 Score=14.11 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 022669 112 FFFFMWYFLNVIFN 125 (294)
Q Consensus 112 ~~i~~w~~~si~~~ 125 (294)
+--++|+.+++.++
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 33467888877654
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=2.96 E-value=2.6e+03 Score=19.34 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhcccCChhhH
Q 022669 209 PFFNAAASQFILGQQLPLTLW 229 (294)
Q Consensus 209 Pvft~lls~l~lgek~s~~~~ 229 (294)
-+..+++++++.+.|++....
T Consensus 219 ~l~~~~~~~~~~~gK~~~~~~ 239 (407)
T 3b9w_A 219 TLATYFLSALFHKGKASIVDM 239 (407)
T ss_dssp HHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHH
Confidence 333445566556677776543
No 6
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=2.95 E-value=2.4e+03 Score=20.04 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhhee
Q 022669 173 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (294)
Q Consensus 173 ~~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV~l 241 (294)
.++..++++..++.+.....+..-...+.. ..-+.+.+..+++..+|.-..++ +.|.++|+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~y--~~p~~~~~~~ 77 (514)
T 3rlf_F 15 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRY--VYPGMAGMGL 77 (514)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTTTCHHHHH----HHHHHHHHHHHHHHCGGGCTHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccHHHHH----HHHHHHHHHeEEEECCCcccHHH--HHHHHHHHHH
Confidence 367777887777666555555555544432 23445566677777666555555 3444444433
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=2.94 E-value=1.3e+03 Score=16.37 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=9.0
Q ss_pred cccccccchhHHHHHH
Q 022669 99 VRFFDRYPALVTGFFF 114 (294)
Q Consensus 99 ~~~~~~~~~l~~~~~i 114 (294)
..|-.+|..|+++.++
T Consensus 7 dPF~YDY~tLRiGGLi 22 (72)
T 2jo1_A 7 DPFTYDYQSLQIGGLV 22 (72)
T ss_dssp SGGGCSTHHHHHHHHH
T ss_pred CCcccchHHhhccchH
Confidence 3455666666665443
No 8
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=2.80 E-value=6.8e+02 Score=13.98 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=8.5
Q ss_pred ccchhHHHHHHhh
Q 022669 195 AVAVSFTHTIKAL 207 (294)
Q Consensus 195 ~vsvs~~~iikal 207 (294)
-+|.+|+.+||.+
T Consensus 4 evppgftaliktl 16 (26)
T 1xkm_A 4 EVPPGFTALIKTL 16 (26)
T ss_dssp CSCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 3566777777654
No 9
>1h2m_S Hypoxia-inducible factor 1 alpha; transcription activator-inhibitor complex, FIH, HIF, DSBH, oxygenase, transcription, 2- oxoglutarate; HET: OGA; 2.5A {Homo sapiens} PDB: 1l8c_B
Probab=2.52 E-value=5.2e+02 Score=17.30 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=6.6
Q ss_pred CccccccccccccccccccccCccccc
Q 022669 1 MESRVLSRATTTTTTISSLRRSPLENH 27 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (294)
|-||.|..... .+++|.|.|---|.+
T Consensus 4 ~asrLlg~s~e-~~~Lp~LT~~DcEVN 29 (52)
T 1h2m_S 4 LACRLLGQSMD-ESGLPQLTSYDCEVN 29 (52)
T ss_dssp ------------------CCCCCCCCS
T ss_pred cchhhcccccc-ccccchhcccceeec
Confidence 34666655444 677999999766665
No 10
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=2.45 E-value=4.2e+02 Score=16.15 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=0.0
Q ss_pred HhHhhhhhee
Q 022669 232 LAPVVIGVSM 241 (294)
Q Consensus 232 llliv~GV~l 241 (294)
+.|+++|+++
T Consensus 9 IaPivVGvvl 18 (33)
T 2kv5_A 9 IAPIFVGLVL 18 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Done!