BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022670
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase
 pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase In Complex With
           Mg-Adp-Alf3
 pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase
 pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase
 pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
 pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
          Length = 589

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 169 VVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFD 209
           +V+ +  N+H +I +   GGVGKTT+   +A + + D  FD
Sbjct: 318 LVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVR-LADMGFD 357


>pdb|1YQT|A Chain A, Rnase-L Inhibitor
          Length = 538

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 153 VKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVA 199
           VKD+ +F  R++V     E  +  K  +IG+    G+GKTT VK +A
Sbjct: 294 VKDYGSF--RLEV-----EPGEIKKGEVIGIVGPNGIGKTTFVKXLA 333


>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
          Length = 593

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 136 FSNVSYRPTPKRAEHME----VKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGK 191
           F+ +S R   +R   +E    VKD+ +F          VE  +  K  +IG+    G+GK
Sbjct: 329 FTKLSERVDVERETLVEYPRLVKDYGSFKLE-------VEPGEIRKGEVIGIVGPNGIGK 381

Query: 192 TTLVKQVA 199
           TT VK +A
Sbjct: 382 TTFVKMLA 389


>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
           From Pyrococcus Abysii
          Length = 607

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 136 FSNVSYRPTPKRAEHME----VKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGK 191
           F+ +S R   +R   +E    VKD+ +F          VE  +  K  +IG+    G+GK
Sbjct: 343 FTKLSERVDVERETLVEYPRLVKDYGSFKLE-------VEPGEIRKGEVIGIVGPNGIGK 395

Query: 192 TTLVKQVA 199
           TT VK +A
Sbjct: 396 TTFVKMLA 403


>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
           Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
           Ps3
          Length = 473

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 141 YRPTPKRAEHMEVKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAK 200
           +RP PK  E     +    ++ +KV   +   +K  K   IG++   GVGKT L++++  
Sbjct: 119 HRPAPKFEEL--ATEVEILETGIKVVDLLAPYIKGGK---IGLFGGAGVGKTVLIQELIH 173

Query: 201 QVMEDN 206
            + +++
Sbjct: 174 NIAQEH 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,312,449
Number of Sequences: 62578
Number of extensions: 337316
Number of successful extensions: 975
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 20
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)