Query 022670
Match_columns 294
No_of_seqs 139 out of 1956
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.1E-33 1.3E-37 273.1 22.1 267 8-289 4-292 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 6.3E-22 1.4E-26 174.4 11.3 125 162-287 1-130 (287)
3 PLN03210 Resistant to P. syrin 99.6 7.7E-15 1.7E-19 151.2 12.6 130 154-294 181-327 (1153)
4 PRK00411 cdc6 cell division co 99.0 5.2E-09 1.1E-13 96.4 14.5 115 156-270 29-150 (394)
5 TIGR02928 orc1/cdc6 family rep 99.0 9E-09 1.9E-13 93.8 13.9 114 157-270 15-141 (365)
6 PF13401 AAA_22: AAA domain; P 98.9 4.6E-09 1E-13 81.2 8.3 94 177-270 3-99 (131)
7 cd01128 rho_factor Transcripti 98.9 3.6E-09 7.7E-14 90.9 6.7 101 176-277 14-123 (249)
8 TIGR03015 pepcterm_ATPase puta 98.8 1.7E-07 3.7E-12 81.7 13.4 96 176-276 41-143 (269)
9 PF13191 AAA_16: AAA ATPase do 98.8 4E-08 8.6E-13 80.5 8.8 51 158-208 1-54 (185)
10 PRK09376 rho transcription ter 98.8 2.9E-08 6.4E-13 89.3 8.4 106 169-276 159-275 (416)
11 COG1474 CDC6 Cdc6-related prot 98.7 2.6E-07 5.7E-12 83.8 13.1 114 158-271 18-136 (366)
12 TIGR00767 rho transcription te 98.6 8.2E-08 1.8E-12 86.9 7.5 93 177-270 167-267 (415)
13 cd00009 AAA The AAA+ (ATPases 98.6 8.2E-07 1.8E-11 69.1 10.8 95 161-270 2-96 (151)
14 PF01637 Arch_ATPase: Archaeal 98.6 6E-08 1.3E-12 82.2 4.3 46 159-204 1-46 (234)
15 PF05729 NACHT: NACHT domain 98.5 3.5E-07 7.7E-12 73.3 7.3 87 179-271 1-94 (166)
16 PRK13342 recombination factor 98.5 3.5E-07 7.7E-12 84.8 7.5 50 154-203 9-61 (413)
17 COG2256 MGS1 ATPase related to 98.4 5.4E-07 1.2E-11 80.5 7.2 95 152-270 19-116 (436)
18 PTZ00112 origin recognition co 98.4 4.5E-06 9.7E-11 81.9 13.7 114 157-270 755-881 (1164)
19 PTZ00202 tuzin; Provisional 98.4 5.3E-06 1.2E-10 75.7 12.9 101 154-264 259-367 (550)
20 PRK11331 5-methylcytosine-spec 98.4 3E-06 6.5E-11 78.0 11.4 110 156-271 174-285 (459)
21 TIGR00635 ruvB Holliday juncti 98.3 6.7E-06 1.4E-10 73.1 10.9 113 156-276 3-126 (305)
22 KOG2028 ATPase related to the 98.3 3.7E-06 8E-11 74.4 8.5 95 156-270 137-234 (554)
23 PF05496 RuvB_N: Holliday junc 98.3 1.9E-06 4.1E-11 72.0 6.3 53 153-205 20-77 (233)
24 PF05621 TniB: Bacterial TniB 98.3 1.6E-05 3.4E-10 69.5 12.1 108 163-270 43-157 (302)
25 PF13173 AAA_14: AAA domain 98.2 2.9E-06 6.3E-11 65.5 5.9 84 178-282 2-85 (128)
26 KOG2543 Origin recognition com 98.2 9.4E-06 2E-10 72.3 9.6 115 157-276 6-133 (438)
27 KOG2227 Pre-initiation complex 98.1 4.1E-05 8.9E-10 69.9 11.4 115 156-270 149-268 (529)
28 PRK00080 ruvB Holliday junctio 98.1 3.7E-05 8E-10 69.2 10.9 114 154-274 22-145 (328)
29 PRK08118 topology modulation p 98.0 2.6E-06 5.7E-11 69.0 2.7 35 179-213 2-37 (167)
30 PF04665 Pox_A32: Poxvirus A32 98.0 1.2E-05 2.6E-10 68.4 6.6 36 179-216 14-49 (241)
31 smart00382 AAA ATPases associa 98.0 2.6E-05 5.7E-10 59.9 7.9 92 178-273 2-93 (148)
32 PRK04195 replication factor C 98.0 2.8E-05 6.1E-10 73.6 9.2 50 154-203 11-64 (482)
33 TIGR03420 DnaA_homol_Hda DnaA 98.0 2.9E-05 6.4E-10 65.7 8.4 56 161-218 21-76 (226)
34 TIGR02903 spore_lon_C ATP-depe 98.0 3.5E-05 7.5E-10 74.9 9.5 128 154-282 151-318 (615)
35 PRK04841 transcriptional regul 98.0 6.9E-05 1.5E-09 76.3 12.1 105 157-270 14-133 (903)
36 PRK12402 replication factor C 98.0 4.4E-05 9.5E-10 68.7 9.4 50 154-203 12-61 (337)
37 PLN03025 replication factor C 98.0 8.1E-05 1.8E-09 66.7 10.8 50 154-203 10-59 (319)
38 PRK13341 recombination factor 98.0 2.5E-05 5.5E-10 76.8 8.1 51 153-203 24-77 (725)
39 TIGR02639 ClpA ATP-dependent C 97.9 4.2E-05 9.2E-10 76.0 9.5 48 156-203 181-228 (731)
40 PRK12608 transcription termina 97.9 0.00018 3.9E-09 65.0 11.6 111 167-278 121-241 (380)
41 PF00004 AAA: ATPase family as 97.9 2.8E-05 6.2E-10 59.7 5.6 23 181-203 1-23 (132)
42 PRK00440 rfc replication facto 97.9 0.00017 3.6E-09 64.4 11.3 51 154-204 14-64 (319)
43 PRK06893 DNA replication initi 97.9 8.4E-05 1.8E-09 63.3 8.8 39 177-217 38-76 (229)
44 PRK14962 DNA polymerase III su 97.8 0.00013 2.8E-09 68.6 10.4 50 154-203 11-61 (472)
45 PRK05564 DNA polymerase III su 97.8 8.9E-05 1.9E-09 66.3 8.5 77 156-233 3-85 (313)
46 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00012 2.5E-09 69.1 9.1 94 156-270 189-294 (802)
47 PRK03992 proteasome-activating 97.8 0.00011 2.4E-09 67.6 8.9 49 155-203 129-190 (389)
48 PRK14961 DNA polymerase III su 97.8 0.00025 5.5E-09 64.7 11.2 50 154-203 13-63 (363)
49 PRK14949 DNA polymerase III su 97.8 0.00013 2.8E-09 72.4 9.6 51 154-204 13-64 (944)
50 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00011 2.3E-09 74.0 9.2 48 156-203 186-233 (852)
51 PRK08116 hypothetical protein; 97.8 0.00016 3.5E-09 63.1 9.1 75 179-269 115-189 (268)
52 PRK14957 DNA polymerase III su 97.8 0.00017 3.7E-09 68.7 10.0 50 154-203 13-63 (546)
53 PRK14963 DNA polymerase III su 97.8 0.00022 4.7E-09 67.7 10.6 51 154-204 11-62 (504)
54 TIGR03689 pup_AAA proteasome A 97.8 0.00012 2.6E-09 69.1 8.8 51 154-204 179-242 (512)
55 CHL00095 clpC Clp protease ATP 97.8 0.00012 2.6E-09 73.6 9.3 48 156-203 178-225 (821)
56 PHA00729 NTP-binding motif con 97.7 0.00019 4.1E-09 60.5 8.8 36 168-203 7-42 (226)
57 PRK07261 topology modulation p 97.7 0.00013 2.8E-09 59.3 7.5 50 180-229 2-52 (171)
58 PRK14958 DNA polymerase III su 97.7 0.00023 5E-09 67.6 10.3 52 153-204 12-64 (509)
59 TIGR01242 26Sp45 26S proteasom 97.7 0.00014 3E-09 66.4 8.5 50 154-203 119-181 (364)
60 KOG2004 Mitochondrial ATP-depe 97.7 0.0018 4E-08 62.3 15.6 99 156-270 410-517 (906)
61 TIGR01241 FtsH_fam ATP-depende 97.7 0.00031 6.6E-09 66.8 10.6 50 154-203 52-113 (495)
62 PF05659 RPW8: Arabidopsis bro 97.7 0.0011 2.3E-08 52.3 11.9 110 4-132 6-115 (147)
63 PRK10865 protein disaggregatio 97.7 0.00017 3.7E-09 72.7 9.2 48 156-203 177-224 (857)
64 PRK14951 DNA polymerase III su 97.7 0.00022 4.8E-09 68.9 9.0 50 154-203 13-63 (618)
65 PHA02544 44 clamp loader, smal 97.6 0.00045 9.7E-09 61.7 10.2 51 153-203 17-68 (316)
66 PRK14956 DNA polymerase III su 97.6 0.00028 6E-09 65.9 8.9 51 154-204 15-66 (484)
67 PRK08727 hypothetical protein; 97.6 0.00038 8.2E-09 59.5 8.9 60 156-217 18-78 (233)
68 PTZ00454 26S protease regulato 97.6 0.00041 9E-09 63.9 9.6 50 154-203 142-204 (398)
69 COG1222 RPT1 ATP-dependent 26S 97.6 0.00036 7.7E-09 62.0 8.6 98 152-270 146-256 (406)
70 PRK12323 DNA polymerase III su 97.6 0.00028 6.1E-09 67.9 8.6 51 154-204 13-64 (700)
71 PRK14960 DNA polymerase III su 97.6 0.00039 8.4E-09 67.1 9.5 50 154-203 12-62 (702)
72 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00027 5.9E-09 71.4 9.0 48 156-203 172-219 (852)
73 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00031 6.6E-09 59.9 8.1 93 177-270 18-127 (235)
74 PRK06645 DNA polymerase III su 97.6 0.00038 8.3E-09 65.9 9.3 52 153-204 17-69 (507)
75 PF05673 DUF815: Protein of un 97.6 0.00026 5.7E-09 60.1 7.3 102 153-280 23-131 (249)
76 PRK07003 DNA polymerase III su 97.6 0.00057 1.2E-08 66.8 10.4 51 154-204 13-64 (830)
77 PRK12377 putative replication 97.5 0.00035 7.6E-09 60.1 8.0 76 177-270 100-175 (248)
78 TIGR02237 recomb_radB DNA repa 97.5 0.0005 1.1E-08 57.5 8.7 90 177-270 11-109 (209)
79 PRK14969 DNA polymerase III su 97.5 0.00077 1.7E-08 64.4 10.8 50 154-203 13-63 (527)
80 PRK14955 DNA polymerase III su 97.5 0.00065 1.4E-08 62.8 10.1 51 154-204 13-64 (397)
81 PRK08691 DNA polymerase III su 97.5 0.00061 1.3E-08 66.2 10.1 51 153-203 12-63 (709)
82 PRK14970 DNA polymerase III su 97.5 0.00091 2E-08 61.1 10.7 50 154-203 14-64 (367)
83 PRK14964 DNA polymerase III su 97.5 0.0009 1.9E-08 63.0 10.7 49 154-202 10-59 (491)
84 PRK07994 DNA polymerase III su 97.5 0.00051 1.1E-08 66.7 9.3 51 154-204 13-64 (647)
85 PRK05896 DNA polymerase III su 97.5 0.00067 1.5E-08 65.1 9.9 51 154-204 13-64 (605)
86 PRK14088 dnaA chromosomal repl 97.5 0.0014 3E-08 61.4 11.9 87 167-269 118-205 (440)
87 PF13207 AAA_17: AAA domain; P 97.5 0.00011 2.3E-09 55.8 3.7 24 180-203 1-24 (121)
88 TIGR02881 spore_V_K stage V sp 97.5 0.00056 1.2E-08 59.4 8.6 27 177-203 41-67 (261)
89 cd01393 recA_like RecA is a b 97.5 0.0011 2.3E-08 56.2 10.1 91 177-270 18-126 (226)
90 PRK11034 clpA ATP-dependent Cl 97.4 0.00019 4.1E-09 71.1 5.5 47 156-202 185-231 (758)
91 TIGR00763 lon ATP-dependent pr 97.4 0.0026 5.7E-08 63.8 13.6 48 156-203 319-372 (775)
92 COG0466 Lon ATP-dependent Lon 97.4 0.0025 5.4E-08 61.5 12.5 48 156-203 322-375 (782)
93 PF00448 SRP54: SRP54-type pro 97.4 0.00028 6.1E-09 58.6 5.5 55 179-235 2-57 (196)
94 cd01133 F1-ATPase_beta F1 ATP 97.4 0.0014 3.1E-08 56.9 10.0 98 177-276 68-182 (274)
95 PRK05541 adenylylsulfate kinas 97.4 0.00048 1E-08 56.1 6.7 36 177-214 6-41 (176)
96 TIGR03499 FlhF flagellar biosy 97.4 0.0016 3.4E-08 57.3 10.3 87 177-267 193-281 (282)
97 TIGR02397 dnaX_nterm DNA polym 97.4 0.0016 3.5E-08 59.0 10.8 50 154-203 11-61 (355)
98 PRK09361 radB DNA repair and r 97.4 0.00091 2E-08 56.7 8.5 88 177-269 22-118 (225)
99 PRK14952 DNA polymerase III su 97.4 0.0013 2.9E-08 63.3 10.5 50 154-203 10-60 (584)
100 TIGR00602 rad24 checkpoint pro 97.4 0.0002 4.4E-09 69.4 4.8 51 153-203 80-135 (637)
101 PRK14954 DNA polymerase III su 97.4 0.0014 3E-08 63.6 10.5 51 154-204 13-64 (620)
102 KOG0739 AAA+-type ATPase [Post 97.3 0.0009 1.9E-08 58.1 7.8 93 157-270 133-237 (439)
103 COG2909 MalT ATP-dependent tra 97.3 0.0031 6.7E-08 61.9 12.2 100 168-270 26-141 (894)
104 PRK08084 DNA replication initi 97.3 0.0012 2.6E-08 56.4 8.6 54 163-218 30-83 (235)
105 KOG0991 Replication factor C, 97.3 0.001 2.2E-08 55.9 7.6 49 156-204 26-74 (333)
106 PRK07940 DNA polymerase III su 97.3 0.0019 4.2E-08 59.4 10.2 48 156-203 4-61 (394)
107 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00058 1.3E-08 61.5 6.4 56 158-213 52-118 (361)
108 COG2255 RuvB Holliday junction 97.3 0.00045 9.8E-09 59.6 5.4 52 154-205 23-79 (332)
109 TIGR00362 DnaA chromosomal rep 97.3 0.0012 2.7E-08 61.1 8.7 76 178-270 136-211 (405)
110 PRK07764 DNA polymerase III su 97.3 0.0016 3.4E-08 65.2 9.9 50 154-203 12-62 (824)
111 CHL00176 ftsH cell division pr 97.3 0.0014 3E-08 63.9 9.3 95 155-270 181-287 (638)
112 PF00308 Bac_DnaA: Bacterial d 97.3 0.0017 3.7E-08 54.9 8.7 39 177-215 33-71 (219)
113 KOG0736 Peroxisome assembly fa 97.3 0.0071 1.5E-07 58.9 13.5 94 156-270 671-776 (953)
114 PRK06696 uridine kinase; Valid 97.3 0.0006 1.3E-08 57.8 5.9 44 161-204 2-48 (223)
115 TIGR02012 tigrfam_recA protein 97.3 0.0012 2.5E-08 58.9 7.9 87 177-270 54-145 (321)
116 KOG0744 AAA+-type ATPase [Post 97.3 0.00088 1.9E-08 58.8 6.8 83 178-270 177-262 (423)
117 PRK14953 DNA polymerase III su 97.2 0.003 6.6E-08 59.7 11.0 51 153-203 12-63 (486)
118 PRK07952 DNA replication prote 97.2 0.0048 1E-07 53.0 11.3 91 163-270 82-174 (244)
119 cd01120 RecA-like_NTPases RecA 97.2 0.0031 6.8E-08 49.8 9.6 40 180-221 1-40 (165)
120 PRK14950 DNA polymerase III su 97.2 0.0031 6.7E-08 61.2 11.2 50 154-203 13-63 (585)
121 PLN00020 ribulose bisphosphate 97.2 0.0016 3.5E-08 58.7 8.3 28 177-204 147-174 (413)
122 KOG0735 AAA+-type ATPase [Post 97.2 0.0012 2.5E-08 63.6 7.8 74 178-270 431-506 (952)
123 PTZ00361 26 proteosome regulat 97.2 0.00084 1.8E-08 62.4 6.9 50 154-203 180-242 (438)
124 CHL00181 cbbX CbbX; Provisiona 97.2 0.0039 8.5E-08 55.0 10.7 25 179-203 60-84 (287)
125 PRK00149 dnaA chromosomal repl 97.2 0.0016 3.5E-08 61.2 8.7 52 165-216 133-186 (450)
126 PRK09111 DNA polymerase III su 97.2 0.0024 5.2E-08 61.8 9.9 50 154-203 21-71 (598)
127 cd00983 recA RecA is a bacter 97.2 0.0013 2.9E-08 58.6 7.5 87 177-270 54-145 (325)
128 cd03115 SRP The signal recogni 97.2 0.0028 6E-08 51.3 8.9 25 180-204 2-26 (173)
129 PRK14087 dnaA chromosomal repl 97.2 0.0016 3.4E-08 61.1 8.3 79 177-270 140-218 (450)
130 PRK06835 DNA replication prote 97.2 0.075 1.6E-06 47.8 18.7 38 178-217 183-220 (329)
131 PRK09354 recA recombinase A; P 97.2 0.0018 4E-08 58.2 8.2 87 177-270 59-150 (349)
132 KOG0733 Nuclear AAA ATPase (VC 97.2 0.00065 1.4E-08 64.2 5.5 72 178-270 545-616 (802)
133 TIGR00678 holB DNA polymerase 97.2 0.0047 1E-07 50.8 10.2 37 168-204 3-40 (188)
134 cd01394 radB RadB. The archaea 97.2 0.0023 4.9E-08 54.0 8.3 89 177-270 18-115 (218)
135 TIGR01243 CDC48 AAA family ATP 97.1 0.001 2.2E-08 66.3 7.1 49 155-203 176-237 (733)
136 COG1484 DnaC DNA replication p 97.1 0.0041 8.8E-08 53.8 9.7 83 168-270 97-179 (254)
137 PRK00771 signal recognition pa 97.1 0.0039 8.5E-08 58.0 10.1 58 177-236 94-152 (437)
138 KOG0734 AAA+-type ATPase conta 97.1 0.0025 5.4E-08 59.5 8.2 50 156-205 303-364 (752)
139 PRK08181 transposase; Validate 97.1 0.0034 7.5E-08 54.7 8.8 55 166-230 96-150 (269)
140 COG1373 Predicted ATPase (AAA+ 97.1 0.0013 2.9E-08 60.7 6.5 97 164-285 24-121 (398)
141 TIGR02880 cbbX_cfxQ probable R 97.1 0.0066 1.4E-07 53.5 10.6 25 180-204 60-84 (284)
142 TIGR02238 recomb_DMC1 meiotic 97.1 0.003 6.6E-08 56.3 8.6 93 177-270 95-203 (313)
143 cd02025 PanK Pantothenate kina 97.0 0.0053 1.1E-07 52.0 9.5 24 180-203 1-24 (220)
144 TIGR00959 ffh signal recogniti 97.0 0.0057 1.2E-07 56.8 10.4 27 177-203 98-124 (428)
145 PRK04296 thymidine kinase; Pro 97.0 0.0016 3.5E-08 53.8 6.0 85 179-269 3-89 (190)
146 PF01695 IstB_IS21: IstB-like 97.0 0.0033 7.1E-08 51.4 7.7 75 177-270 46-120 (178)
147 COG1223 Predicted ATPase (AAA+ 97.0 0.004 8.6E-08 53.2 8.3 94 156-270 120-222 (368)
148 PRK14965 DNA polymerase III su 97.0 0.0051 1.1E-07 59.5 10.3 50 154-203 13-63 (576)
149 PRK08939 primosomal protein Dn 97.0 0.0059 1.3E-07 54.3 9.9 95 161-274 135-235 (306)
150 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0062 1.3E-07 52.1 9.8 88 177-269 20-137 (237)
151 PRK06547 hypothetical protein; 97.0 0.0013 2.7E-08 53.5 5.2 35 169-203 6-40 (172)
152 PRK14948 DNA polymerase III su 97.0 0.0074 1.6E-07 58.8 11.2 51 154-204 13-64 (620)
153 PRK15455 PrkA family serine pr 97.0 0.001 2.2E-08 63.2 5.1 49 156-204 75-129 (644)
154 PF00485 PRK: Phosphoribulokin 97.0 0.0008 1.7E-08 55.7 3.9 25 180-204 1-25 (194)
155 PRK10536 hypothetical protein; 97.0 0.0053 1.1E-07 52.8 8.9 58 154-213 52-109 (262)
156 PRK06526 transposase; Provisio 97.0 0.0019 4.1E-08 55.9 6.2 27 177-203 97-123 (254)
157 PRK10867 signal recognition pa 97.0 0.0059 1.3E-07 56.8 9.8 27 177-203 99-125 (433)
158 PRK12422 chromosomal replicati 97.0 0.0039 8.4E-08 58.4 8.7 74 178-270 141-214 (445)
159 PRK14959 DNA polymerase III su 97.0 0.0049 1.1E-07 59.6 9.5 50 154-203 13-63 (624)
160 PRK14971 DNA polymerase III su 97.0 0.0078 1.7E-07 58.6 11.0 50 154-203 14-64 (614)
161 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0024 5.3E-08 60.3 7.3 48 156-203 227-284 (489)
162 PRK10787 DNA-binding ATP-depen 97.0 0.025 5.4E-07 56.7 14.7 48 156-203 321-374 (784)
163 PRK06305 DNA polymerase III su 97.0 0.0057 1.2E-07 57.4 9.8 50 154-203 14-64 (451)
164 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0032 7E-08 51.4 7.2 24 180-203 1-24 (183)
165 PRK06921 hypothetical protein; 96.9 0.0066 1.4E-07 52.9 9.5 39 177-216 116-154 (266)
166 PRK09183 transposase/IS protei 96.9 0.0036 7.8E-08 54.4 7.7 27 177-203 101-127 (259)
167 PF13238 AAA_18: AAA domain; P 96.9 0.00093 2E-08 50.9 3.5 22 181-202 1-22 (129)
168 PRK14722 flhF flagellar biosyn 96.9 0.0067 1.5E-07 55.2 9.5 60 177-236 136-196 (374)
169 KOG1969 DNA replication checkp 96.9 0.0033 7.2E-08 60.7 7.7 74 177-270 325-399 (877)
170 PRK06067 flagellar accessory p 96.9 0.0081 1.7E-07 51.2 9.5 87 177-268 24-130 (234)
171 PRK05480 uridine/cytidine kina 96.9 0.0011 2.3E-08 55.6 3.9 27 176-202 4-30 (209)
172 PLN03187 meiotic recombination 96.9 0.0098 2.1E-07 53.6 10.2 93 177-270 125-233 (344)
173 PRK09270 nucleoside triphospha 96.9 0.016 3.4E-07 49.3 11.1 29 176-204 31-59 (229)
174 COG1102 Cmk Cytidylate kinase 96.9 0.0021 4.6E-08 50.9 5.1 45 179-236 1-45 (179)
175 KOG0741 AAA+-type ATPase [Post 96.9 0.0031 6.8E-08 58.8 7.0 81 177-281 537-621 (744)
176 COG0470 HolB ATPase involved i 96.9 0.0086 1.9E-07 53.4 9.9 47 158-204 2-50 (325)
177 PF07728 AAA_5: AAA domain (dy 96.9 0.0029 6.3E-08 49.2 6.1 43 181-228 2-44 (139)
178 KOG0729 26S proteasome regulat 96.9 0.011 2.3E-07 50.8 9.7 95 154-269 174-281 (435)
179 PRK08233 hypothetical protein; 96.9 0.001 2.2E-08 54.2 3.5 26 178-203 3-28 (182)
180 KOG0735 AAA+-type ATPase [Post 96.9 0.011 2.4E-07 57.2 10.6 93 157-270 667-772 (952)
181 cd01131 PilT Pilus retraction 96.9 0.0014 3E-08 54.5 4.3 88 179-274 2-90 (198)
182 TIGR00554 panK_bact pantothena 96.8 0.011 2.3E-07 52.1 10.0 28 176-203 60-87 (290)
183 PF08423 Rad51: Rad51; InterP 96.8 0.0074 1.6E-07 52.3 9.0 93 177-270 37-145 (256)
184 PF13671 AAA_33: AAA domain; P 96.8 0.0011 2.5E-08 51.6 3.6 24 180-203 1-24 (143)
185 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0065 1.4E-07 54.3 8.8 93 177-270 95-203 (316)
186 PRK07667 uridine kinase; Provi 96.8 0.0021 4.6E-08 53.2 5.3 38 167-204 4-43 (193)
187 PLN03186 DNA repair protein RA 96.8 0.0063 1.4E-07 54.9 8.7 93 177-270 122-230 (342)
188 PRK12724 flagellar biosynthesi 96.8 0.006 1.3E-07 56.2 8.5 25 178-202 223-247 (432)
189 TIGR00235 udk uridine kinase. 96.8 0.0012 2.5E-08 55.3 3.7 28 176-203 4-31 (207)
190 PRK12727 flagellar biosynthesi 96.8 0.0082 1.8E-07 56.8 9.5 27 177-203 349-375 (559)
191 COG1618 Predicted nucleotide k 96.8 0.0021 4.5E-08 50.9 4.7 31 178-209 5-35 (179)
192 PTZ00301 uridine kinase; Provi 96.8 0.0013 2.7E-08 55.3 3.7 26 178-203 3-28 (210)
193 PF00154 RecA: recA bacterial 96.8 0.013 2.9E-07 52.2 10.3 100 177-283 52-156 (322)
194 TIGR02236 recomb_radA DNA repa 96.8 0.01 2.2E-07 52.9 9.7 93 177-270 94-204 (310)
195 PRK07133 DNA polymerase III su 96.8 0.0097 2.1E-07 58.5 10.1 50 154-203 15-65 (725)
196 PRK11889 flhF flagellar biosyn 96.8 0.011 2.5E-07 53.9 9.8 27 177-203 240-266 (436)
197 PRK05703 flhF flagellar biosyn 96.8 0.0074 1.6E-07 56.2 8.9 26 178-203 221-246 (424)
198 PRK03839 putative kinase; Prov 96.8 0.0013 2.8E-08 53.8 3.5 24 180-203 2-25 (180)
199 COG3899 Predicted ATPase [Gene 96.8 0.0079 1.7E-07 60.8 9.7 48 158-205 1-51 (849)
200 PRK08451 DNA polymerase III su 96.8 0.018 3.9E-07 54.9 11.5 49 154-202 11-60 (535)
201 PRK05563 DNA polymerase III su 96.8 0.016 3.5E-07 55.9 11.3 50 154-203 13-63 (559)
202 KOG2228 Origin recognition com 96.7 0.011 2.4E-07 52.3 9.1 111 156-269 23-148 (408)
203 PRK08533 flagellar accessory p 96.7 0.017 3.6E-07 49.3 10.2 49 177-229 23-71 (230)
204 TIGR01425 SRP54_euk signal rec 96.7 0.083 1.8E-06 49.1 15.4 28 177-204 99-126 (429)
205 PRK04301 radA DNA repair and r 96.7 0.014 3E-07 52.3 10.1 93 177-270 101-210 (317)
206 cd02027 APSK Adenosine 5'-phos 96.7 0.0067 1.5E-07 48.0 7.3 24 180-203 1-24 (149)
207 PRK00279 adk adenylate kinase; 96.7 0.0092 2E-07 50.2 8.5 24 180-203 2-25 (215)
208 KOG0738 AAA+-type ATPase [Post 96.7 0.0046 1E-07 55.7 6.7 28 177-204 244-271 (491)
209 TIGR01243 CDC48 AAA family ATP 96.7 0.0069 1.5E-07 60.5 8.8 48 156-203 452-512 (733)
210 COG4088 Predicted nucleotide k 96.7 0.0011 2.4E-08 54.6 2.7 27 179-205 2-28 (261)
211 PRK05342 clpX ATP-dependent pr 96.7 0.005 1.1E-07 57.0 7.3 47 157-203 71-133 (412)
212 cd01135 V_A-ATPase_B V/A-type 96.7 0.014 3E-07 50.8 9.4 102 177-278 68-187 (276)
213 COG0542 clpA ATP-binding subun 96.7 0.0029 6.3E-08 62.2 5.9 102 156-270 169-274 (786)
214 cd02019 NK Nucleoside/nucleoti 96.7 0.0016 3.5E-08 44.3 3.0 23 180-202 1-23 (69)
215 PF08433 KTI12: Chromatin asso 96.7 0.0053 1.2E-07 53.5 6.8 26 179-204 2-27 (270)
216 PRK06647 DNA polymerase III su 96.7 0.015 3.3E-07 56.0 10.5 50 154-203 13-63 (563)
217 PRK09087 hypothetical protein; 96.7 0.025 5.5E-07 48.0 10.8 27 177-203 43-69 (226)
218 KOG0731 AAA+-type ATPase conta 96.7 0.007 1.5E-07 59.3 8.1 94 156-270 310-415 (774)
219 PRK08927 fliI flagellum-specif 96.7 0.0087 1.9E-07 55.5 8.4 96 177-276 157-267 (442)
220 PRK06762 hypothetical protein; 96.6 0.0019 4.1E-08 51.9 3.6 24 179-202 3-26 (166)
221 PF00006 ATP-synt_ab: ATP synt 96.6 0.01 2.2E-07 50.0 8.0 98 169-270 5-117 (215)
222 COG0563 Adk Adenylate kinase a 96.6 0.0042 9E-08 50.7 5.5 24 180-203 2-25 (178)
223 TIGR02639 ClpA ATP-dependent C 96.6 0.0087 1.9E-07 59.7 8.9 113 157-280 454-577 (731)
224 PTZ00035 Rad51 protein; Provis 96.6 0.017 3.6E-07 52.2 9.9 93 177-270 117-225 (337)
225 PF03205 MobB: Molybdopterin g 96.6 0.0056 1.2E-07 47.9 6.1 39 179-218 1-39 (140)
226 PRK08149 ATP synthase SpaL; Va 96.6 0.0099 2.2E-07 55.0 8.5 96 177-276 150-260 (428)
227 PRK00625 shikimate kinase; Pro 96.6 0.0019 4.2E-08 52.5 3.5 24 180-203 2-25 (173)
228 PRK04328 hypothetical protein; 96.6 0.011 2.3E-07 51.1 8.3 88 177-269 22-139 (249)
229 PRK12723 flagellar biosynthesi 96.6 0.013 2.8E-07 53.8 9.1 90 177-269 173-265 (388)
230 PRK08972 fliI flagellum-specif 96.6 0.0056 1.2E-07 56.7 6.8 96 177-276 161-271 (444)
231 PRK00889 adenylylsulfate kinas 96.6 0.01 2.2E-07 48.1 7.7 28 177-204 3-30 (175)
232 COG0468 RecA RecA/RadA recombi 96.6 0.023 5E-07 49.7 10.1 90 177-270 59-153 (279)
233 PRK14086 dnaA chromosomal repl 96.6 0.011 2.4E-07 57.0 8.8 40 177-216 313-352 (617)
234 PRK11034 clpA ATP-dependent Cl 96.6 0.0082 1.8E-07 59.7 8.2 112 158-280 459-581 (758)
235 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0023 4.9E-08 52.4 3.7 26 177-202 2-27 (188)
236 PF05970 PIF1: PIF1-like helic 96.6 0.0076 1.6E-07 55.0 7.4 102 164-270 8-114 (364)
237 PF07693 KAP_NTPase: KAP famil 96.6 0.012 2.6E-07 52.5 8.5 70 164-233 3-80 (325)
238 COG2607 Predicted ATPase (AAA+ 96.5 0.013 2.8E-07 49.6 7.8 100 156-282 59-166 (287)
239 PRK05642 DNA replication initi 96.5 0.0063 1.4E-07 52.0 6.3 38 178-217 45-82 (234)
240 PRK14974 cell division protein 96.5 0.036 7.7E-07 49.9 11.3 57 177-236 139-197 (336)
241 PRK04040 adenylate kinase; Pro 96.5 0.0025 5.3E-08 52.6 3.6 25 179-203 3-27 (188)
242 PRK08903 DnaA regulatory inact 96.5 0.0063 1.4E-07 51.6 6.2 48 156-203 17-67 (227)
243 PF12775 AAA_7: P-loop contain 96.5 0.0029 6.2E-08 55.3 4.2 87 167-270 23-112 (272)
244 TIGR03574 selen_PSTK L-seryl-t 96.5 0.008 1.7E-07 51.8 6.9 25 180-204 1-25 (249)
245 PRK05439 pantothenate kinase; 96.5 0.036 7.8E-07 49.3 11.0 27 177-203 85-111 (311)
246 KOG3347 Predicted nucleotide k 96.5 0.0055 1.2E-07 47.9 5.0 69 178-256 7-75 (176)
247 PRK12726 flagellar biosynthesi 96.5 0.028 6.1E-07 51.2 10.2 90 177-269 205-296 (407)
248 PRK13765 ATP-dependent proteas 96.5 0.0076 1.6E-07 58.7 7.1 79 153-235 27-105 (637)
249 PF03215 Rad17: Rad17 cell cyc 96.5 0.0065 1.4E-07 57.8 6.5 57 154-214 16-77 (519)
250 PRK00131 aroK shikimate kinase 96.5 0.0031 6.7E-08 50.8 3.8 27 177-203 3-29 (175)
251 KOG0730 AAA+-type ATPase [Post 96.5 0.029 6.2E-07 53.8 10.6 49 156-204 433-494 (693)
252 TIGR03305 alt_F1F0_F1_bet alte 96.5 0.016 3.5E-07 53.9 8.9 100 177-277 137-252 (449)
253 cd02023 UMPK Uridine monophosp 96.5 0.0022 4.7E-08 53.2 2.8 23 180-202 1-23 (198)
254 PRK12597 F0F1 ATP synthase sub 96.5 0.016 3.4E-07 54.3 8.7 93 177-270 142-249 (461)
255 PRK09280 F0F1 ATP synthase sub 96.5 0.03 6.5E-07 52.3 10.5 100 177-277 143-258 (463)
256 COG0572 Udk Uridine kinase [Nu 96.5 0.0029 6.4E-08 52.9 3.5 28 177-204 7-34 (218)
257 COG4608 AppF ABC-type oligopep 96.4 0.0081 1.8E-07 51.7 6.2 90 177-270 38-139 (268)
258 COG1428 Deoxynucleoside kinase 96.4 0.0026 5.7E-08 52.6 3.1 28 178-205 4-31 (216)
259 PRK14721 flhF flagellar biosyn 96.4 0.038 8.3E-07 51.2 11.1 26 177-202 190-215 (420)
260 PF00910 RNA_helicase: RNA hel 96.4 0.0025 5.4E-08 47.4 2.8 24 181-204 1-24 (107)
261 COG0542 clpA ATP-binding subun 96.4 0.0092 2E-07 58.8 7.3 104 156-270 490-605 (786)
262 TIGR00764 lon_rel lon-related 96.4 0.013 2.9E-07 57.0 8.4 78 154-235 15-92 (608)
263 TIGR01351 adk adenylate kinase 96.4 0.016 3.4E-07 48.6 7.9 23 181-203 2-24 (210)
264 PRK14723 flhF flagellar biosyn 96.4 0.026 5.7E-07 55.8 10.3 26 178-203 185-210 (767)
265 PRK09519 recA DNA recombinatio 96.4 0.017 3.7E-07 57.2 9.0 87 177-270 59-150 (790)
266 PRK06936 type III secretion sy 96.4 0.01 2.2E-07 55.0 7.1 96 177-276 161-271 (439)
267 PRK06002 fliI flagellum-specif 96.4 0.01 2.2E-07 55.2 7.0 91 177-270 164-266 (450)
268 PF00406 ADK: Adenylate kinase 96.4 0.011 2.3E-07 46.8 6.3 75 183-270 1-85 (151)
269 PRK10865 protein disaggregatio 96.4 0.021 4.6E-07 57.9 9.9 118 156-281 567-695 (857)
270 PRK05922 type III secretion sy 96.4 0.012 2.6E-07 54.6 7.4 98 176-277 155-267 (434)
271 PF00625 Guanylate_kin: Guanyl 96.4 0.0052 1.1E-07 50.3 4.6 38 178-217 2-39 (183)
272 COG0467 RAD55 RecA-superfamily 96.4 0.011 2.4E-07 51.3 6.9 88 177-269 22-135 (260)
273 PRK04182 cytidylate kinase; Pr 96.4 0.0092 2E-07 48.3 6.1 25 179-203 1-25 (180)
274 PRK14532 adenylate kinase; Pro 96.4 0.018 4E-07 47.2 7.9 23 181-203 3-25 (188)
275 TIGR02322 phosphon_PhnN phosph 96.4 0.0033 7.1E-08 51.2 3.3 25 179-203 2-26 (179)
276 TIGR00390 hslU ATP-dependent p 96.4 0.015 3.3E-07 53.5 7.8 74 157-232 12-103 (441)
277 PF06745 KaiC: KaiC; InterPro 96.4 0.0062 1.4E-07 51.6 5.2 89 177-270 18-127 (226)
278 PF02562 PhoH: PhoH-like prote 96.3 0.0079 1.7E-07 50.1 5.5 51 162-214 5-55 (205)
279 PTZ00185 ATPase alpha subunit; 96.3 0.041 8.8E-07 51.9 10.6 100 177-276 188-308 (574)
280 PRK12678 transcription termina 96.3 0.0073 1.6E-07 57.5 5.7 108 169-277 406-523 (672)
281 cd01121 Sms Sms (bacterial rad 96.3 0.015 3.3E-07 53.1 7.7 85 177-270 81-170 (372)
282 CHL00081 chlI Mg-protoporyphyr 96.3 0.0063 1.4E-07 54.9 5.2 51 153-203 13-63 (350)
283 PRK06217 hypothetical protein; 96.3 0.0035 7.6E-08 51.4 3.3 35 179-214 2-38 (183)
284 KOG0989 Replication factor C, 96.3 0.0078 1.7E-07 52.6 5.4 66 154-219 33-99 (346)
285 COG0541 Ffh Signal recognition 96.3 0.38 8.3E-06 44.3 16.3 59 177-236 99-157 (451)
286 PRK01184 hypothetical protein; 96.3 0.012 2.7E-07 48.0 6.5 21 179-200 2-22 (184)
287 PRK05688 fliI flagellum-specif 96.3 0.012 2.5E-07 54.9 6.8 96 177-276 167-277 (451)
288 TIGR00064 ftsY signal recognit 96.3 0.031 6.8E-07 48.8 9.2 28 177-204 71-98 (272)
289 cd02024 NRK1 Nicotinamide ribo 96.3 0.0033 7.1E-08 51.7 2.9 23 180-202 1-23 (187)
290 cd02020 CMPK Cytidine monophos 96.3 0.0035 7.6E-08 49.0 3.0 24 180-203 1-24 (147)
291 PTZ00088 adenylate kinase 1; P 96.3 0.0053 1.1E-07 52.2 4.3 25 179-203 7-31 (229)
292 PF13481 AAA_25: AAA domain; P 96.3 0.037 8E-07 45.4 9.2 91 178-270 32-153 (193)
293 TIGR00176 mobB molybdopterin-g 96.3 0.0077 1.7E-07 48.0 4.9 38 180-218 1-38 (155)
294 cd01132 F1_ATPase_alpha F1 ATP 96.3 0.032 7E-07 48.5 9.0 99 177-279 68-183 (274)
295 COG0465 HflB ATP-dependent Zn 96.3 0.011 2.3E-07 56.7 6.6 51 155-205 148-210 (596)
296 PF01583 APS_kinase: Adenylyls 96.3 0.0059 1.3E-07 48.6 4.2 28 178-205 2-29 (156)
297 TIGR03345 VI_ClpV1 type VI sec 96.3 0.016 3.4E-07 58.7 8.1 48 156-203 565-621 (852)
298 PRK02496 adk adenylate kinase; 96.3 0.038 8.3E-07 45.1 9.2 24 180-203 3-26 (184)
299 PRK10751 molybdopterin-guanine 96.2 0.0054 1.2E-07 49.7 3.9 28 177-204 5-32 (173)
300 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.027 5.8E-07 48.9 8.5 40 177-218 35-74 (259)
301 cd02028 UMPK_like Uridine mono 96.2 0.0041 8.8E-08 50.9 3.2 24 180-203 1-24 (179)
302 COG0464 SpoVK ATPases of the A 96.2 0.0075 1.6E-07 57.4 5.5 75 177-272 275-349 (494)
303 TIGR03346 chaperone_ClpB ATP-d 96.2 0.023 4.9E-07 57.8 9.1 117 157-281 565-692 (852)
304 PRK08472 fliI flagellum-specif 96.2 0.019 4E-07 53.4 7.8 98 176-277 155-266 (434)
305 PF14516 AAA_35: AAA-like doma 96.2 0.088 1.9E-06 47.4 12.1 110 159-271 13-140 (331)
306 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.058 1.3E-06 45.7 10.4 89 177-270 19-133 (229)
307 cd01122 GP4d_helicase GP4d_hel 96.2 0.048 1E-06 47.4 10.2 51 177-230 29-79 (271)
308 cd00227 CPT Chloramphenicol (C 96.2 0.0045 9.8E-08 50.3 3.4 26 178-203 2-27 (175)
309 PRK13947 shikimate kinase; Pro 96.2 0.0042 9.2E-08 50.1 3.2 25 180-204 3-27 (171)
310 TIGR02640 gas_vesic_GvpN gas v 96.2 0.023 4.9E-07 49.5 7.9 57 163-226 8-64 (262)
311 PRK14528 adenylate kinase; Pro 96.2 0.033 7.1E-07 45.8 8.5 25 179-203 2-26 (186)
312 PRK13949 shikimate kinase; Pro 96.2 0.0046 9.9E-08 50.1 3.3 24 180-203 3-26 (169)
313 TIGR03263 guanyl_kin guanylate 96.2 0.0039 8.4E-08 50.8 2.9 23 179-201 2-24 (180)
314 cd01134 V_A-ATPase_A V/A-type 96.2 0.044 9.4E-07 49.3 9.6 98 169-270 147-266 (369)
315 cd00464 SK Shikimate kinase (S 96.2 0.0049 1.1E-07 48.6 3.3 23 181-203 2-24 (154)
316 TIGR02902 spore_lonB ATP-depen 96.2 0.0074 1.6E-07 57.9 5.0 49 154-202 62-110 (531)
317 COG3640 CooC CO dehydrogenase 96.2 0.0083 1.8E-07 50.5 4.6 31 180-210 2-32 (255)
318 TIGR00382 clpX endopeptidase C 96.1 0.026 5.6E-07 52.2 8.3 48 156-203 76-141 (413)
319 cd02021 GntK Gluconate kinase 96.1 0.0044 9.5E-08 48.9 2.9 23 180-202 1-23 (150)
320 PRK06995 flhF flagellar biosyn 96.1 0.041 8.9E-07 51.8 9.7 26 178-203 256-281 (484)
321 KOG1532 GTPase XAB1, interacts 96.1 0.0058 1.3E-07 52.6 3.6 61 177-239 18-89 (366)
322 cd01672 TMPK Thymidine monopho 96.1 0.02 4.3E-07 47.0 6.9 26 179-204 1-26 (200)
323 TIGR02030 BchI-ChlI magnesium 96.1 0.011 2.5E-07 53.1 5.8 48 155-202 2-49 (337)
324 PRK07594 type III secretion sy 96.1 0.023 5E-07 52.8 7.8 96 176-276 153-264 (433)
325 TIGR02173 cyt_kin_arch cytidyl 96.1 0.015 3.2E-07 46.7 6.0 25 179-203 1-25 (171)
326 PRK10463 hydrogenase nickel in 96.1 0.018 3.8E-07 50.6 6.7 38 167-204 93-130 (290)
327 PF06068 TIP49: TIP49 C-termin 96.1 0.011 2.4E-07 53.2 5.5 74 156-232 23-105 (398)
328 PRK00300 gmk guanylate kinase; 96.1 0.0054 1.2E-07 51.0 3.4 26 177-202 4-29 (205)
329 PRK05973 replicative DNA helic 96.1 0.056 1.2E-06 46.2 9.6 49 177-229 63-111 (237)
330 TIGR01041 ATP_syn_B_arch ATP s 96.1 0.027 5.8E-07 52.7 8.2 102 177-278 140-259 (458)
331 TIGR00150 HI0065_YjeE ATPase, 96.1 0.012 2.6E-07 45.5 5.0 28 177-204 21-48 (133)
332 COG1224 TIP49 DNA helicase TIP 96.1 0.014 3.1E-07 52.1 6.0 55 156-210 38-97 (450)
333 PF07726 AAA_3: ATPase family 96.1 0.0064 1.4E-07 46.5 3.3 41 181-226 2-42 (131)
334 PRK13531 regulatory ATPase Rav 96.1 0.013 2.8E-07 55.0 6.0 51 157-209 20-70 (498)
335 TIGR00073 hypB hydrogenase acc 96.1 0.0074 1.6E-07 50.5 4.0 33 171-203 15-47 (207)
336 TIGR03496 FliI_clade1 flagella 96.0 0.013 2.8E-07 54.2 5.8 96 177-276 136-246 (411)
337 TIGR03497 FliI_clade2 flagella 96.0 0.016 3.6E-07 53.5 6.5 97 176-276 135-246 (413)
338 PRK14530 adenylate kinase; Pro 96.0 0.0065 1.4E-07 51.1 3.5 25 179-203 4-28 (215)
339 PRK13975 thymidylate kinase; P 96.0 0.0065 1.4E-07 50.1 3.5 26 179-204 3-28 (196)
340 COG1763 MobB Molybdopterin-gua 96.0 0.0081 1.7E-07 48.0 3.7 29 178-206 2-30 (161)
341 cd01136 ATPase_flagellum-secre 96.0 0.037 8E-07 49.5 8.3 90 177-270 68-171 (326)
342 PRK07196 fliI flagellum-specif 96.0 0.021 4.6E-07 53.0 7.0 100 176-279 153-267 (434)
343 TIGR01420 pilT_fam pilus retra 96.0 0.012 2.6E-07 53.3 5.3 92 176-275 120-212 (343)
344 PRK10733 hflB ATP-dependent me 96.0 0.016 3.4E-07 57.0 6.5 25 179-203 186-210 (644)
345 PRK05057 aroK shikimate kinase 96.0 0.0072 1.6E-07 49.1 3.5 26 178-203 4-29 (172)
346 TIGR01039 atpD ATP synthase, F 96.0 0.093 2E-06 49.0 11.1 100 177-277 142-257 (461)
347 PRK10078 ribose 1,5-bisphospho 96.0 0.0061 1.3E-07 50.1 3.1 25 179-203 3-27 (186)
348 COG1124 DppF ABC-type dipeptid 96.0 0.0061 1.3E-07 51.6 3.0 24 177-200 32-55 (252)
349 COG1116 TauB ABC-type nitrate/ 96.0 0.0061 1.3E-07 51.8 3.0 24 177-200 28-51 (248)
350 PRK14527 adenylate kinase; Pro 95.9 0.0079 1.7E-07 49.6 3.7 28 176-203 4-31 (191)
351 TIGR01313 therm_gnt_kin carboh 95.9 0.0052 1.1E-07 49.2 2.5 23 181-203 1-23 (163)
352 TIGR02655 circ_KaiC circadian 95.9 0.057 1.2E-06 51.3 9.9 88 177-269 262-364 (484)
353 PRK10416 signal recognition pa 95.9 0.17 3.6E-06 45.3 12.3 28 177-204 113-140 (318)
354 PRK13695 putative NTPase; Prov 95.9 0.014 3.1E-07 47.3 5.1 34 180-214 2-35 (174)
355 cd00544 CobU Adenosylcobinamid 95.9 0.034 7.5E-07 45.0 7.2 82 181-269 2-84 (169)
356 PRK06620 hypothetical protein; 95.9 0.0067 1.4E-07 51.1 3.1 25 179-203 45-69 (214)
357 PRK13946 shikimate kinase; Pro 95.9 0.0072 1.6E-07 49.6 3.3 26 178-203 10-35 (184)
358 PRK14529 adenylate kinase; Pro 95.9 0.046 1E-06 46.2 8.2 25 180-204 2-26 (223)
359 PF03193 DUF258: Protein of un 95.9 0.014 3E-07 46.7 4.7 34 165-201 25-58 (161)
360 PRK05201 hslU ATP-dependent pr 95.9 0.027 6E-07 51.9 7.2 74 157-232 15-106 (443)
361 PF08477 Miro: Miro-like prote 95.9 0.0079 1.7E-07 45.1 3.2 23 181-203 2-24 (119)
362 cd00071 GMPK Guanosine monopho 95.9 0.0064 1.4E-07 47.4 2.7 23 180-202 1-23 (137)
363 PF00158 Sigma54_activat: Sigm 95.9 0.044 9.5E-07 44.3 7.7 68 160-230 2-71 (168)
364 CHL00095 clpC Clp protease ATP 95.9 0.024 5.1E-07 57.4 7.4 117 157-281 509-636 (821)
365 PRK06793 fliI flagellum-specif 95.9 0.024 5.1E-07 52.6 6.8 90 177-270 155-258 (432)
366 COG4240 Predicted kinase [Gene 95.9 0.067 1.5E-06 45.0 8.6 80 176-256 48-132 (300)
367 PRK13948 shikimate kinase; Pro 95.8 0.009 1.9E-07 49.0 3.5 27 177-203 9-35 (182)
368 PF13086 AAA_11: AAA domain; P 95.8 0.021 4.5E-07 48.0 5.9 52 180-231 19-75 (236)
369 PRK06820 type III secretion sy 95.8 0.026 5.6E-07 52.5 6.9 94 177-277 162-273 (440)
370 PRK05800 cobU adenosylcobinami 95.8 0.045 9.7E-07 44.3 7.6 83 179-269 2-87 (170)
371 PF13245 AAA_19: Part of AAA d 95.8 0.027 5.9E-07 39.1 5.4 26 177-202 9-35 (76)
372 KOG0743 AAA+-type ATPase [Post 95.8 0.04 8.8E-07 50.7 7.9 40 164-203 212-260 (457)
373 TIGR01287 nifH nitrogenase iro 95.8 0.0097 2.1E-07 52.0 3.9 27 179-205 1-27 (275)
374 PRK03846 adenylylsulfate kinas 95.8 0.01 2.2E-07 49.3 3.8 28 176-203 22-49 (198)
375 TIGR01040 V-ATPase_V1_B V-type 95.8 0.059 1.3E-06 50.2 9.0 101 177-277 140-267 (466)
376 TIGR02788 VirB11 P-type DNA tr 95.8 0.0076 1.6E-07 53.7 3.2 93 177-276 143-236 (308)
377 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0084 1.8E-07 44.5 2.8 23 177-199 14-36 (107)
378 cd00984 DnaB_C DnaB helicase C 95.8 0.13 2.9E-06 43.7 10.8 50 177-229 12-61 (242)
379 TIGR03498 FliI_clade3 flagella 95.8 0.049 1.1E-06 50.5 8.4 96 177-276 139-249 (418)
380 PF13521 AAA_28: AAA domain; P 95.8 0.0084 1.8E-07 48.0 3.1 21 181-201 2-22 (163)
381 TIGR02782 TrbB_P P-type conjug 95.8 0.016 3.5E-07 51.4 5.1 91 178-276 132-222 (299)
382 KOG0651 26S proteasome regulat 95.8 0.024 5.3E-07 49.7 6.0 28 178-205 166-193 (388)
383 PRK00698 tmk thymidylate kinas 95.8 0.033 7.1E-07 46.2 6.8 27 178-204 3-29 (205)
384 KOG0728 26S proteasome regulat 95.8 0.047 1E-06 46.6 7.5 57 156-219 146-215 (404)
385 PRK09099 type III secretion sy 95.7 0.03 6.5E-07 52.2 6.9 97 176-276 161-272 (441)
386 PRK13407 bchI magnesium chelat 95.7 0.018 3.9E-07 51.8 5.3 49 154-202 5-53 (334)
387 cd01129 PulE-GspE PulE/GspE Th 95.7 0.022 4.7E-07 49.6 5.6 96 167-274 70-165 (264)
388 PRK07721 fliI flagellum-specif 95.7 0.033 7.1E-07 52.0 7.1 97 176-276 156-267 (438)
389 PF03266 NTPase_1: NTPase; In 95.7 0.011 2.3E-07 47.9 3.4 24 181-204 2-25 (168)
390 TIGR02655 circ_KaiC circadian 95.7 0.049 1.1E-06 51.8 8.4 48 177-228 20-68 (484)
391 PRK04196 V-type ATP synthase s 95.7 0.06 1.3E-06 50.5 8.8 100 177-277 142-260 (460)
392 COG0194 Gmk Guanylate kinase [ 95.7 0.019 4.2E-07 46.7 4.8 25 178-202 4-28 (191)
393 PF00005 ABC_tran: ABC transpo 95.7 0.0089 1.9E-07 46.2 2.9 26 177-202 10-35 (137)
394 TIGR00041 DTMP_kinase thymidyl 95.7 0.042 9.2E-07 45.2 7.1 26 179-204 4-29 (195)
395 PRK09112 DNA polymerase III su 95.7 0.031 6.8E-07 50.7 6.7 51 154-204 20-71 (351)
396 PRK14493 putative bifunctional 95.7 0.012 2.6E-07 51.4 3.9 28 179-206 2-29 (274)
397 PF13604 AAA_30: AAA domain; P 95.7 0.035 7.6E-07 46.0 6.5 37 169-205 9-45 (196)
398 TIGR03324 alt_F1F0_F1_al alter 95.7 0.053 1.2E-06 51.1 8.3 98 177-278 161-275 (497)
399 PRK03731 aroL shikimate kinase 95.7 0.011 2.5E-07 47.6 3.4 25 179-203 3-27 (171)
400 KOG1514 Origin recognition com 95.6 0.12 2.7E-06 50.0 10.7 110 157-270 396-520 (767)
401 PRK14490 putative bifunctional 95.6 0.021 4.6E-07 52.2 5.6 40 177-218 4-43 (369)
402 PRK06761 hypothetical protein; 95.6 0.025 5.4E-07 49.6 5.7 26 179-204 4-29 (282)
403 COG0703 AroK Shikimate kinase 95.6 0.012 2.5E-07 47.5 3.3 26 179-204 3-28 (172)
404 KOG0726 26S proteasome regulat 95.6 0.1 2.3E-06 45.5 9.2 53 152-204 180-245 (440)
405 PRK14737 gmk guanylate kinase; 95.6 0.012 2.5E-07 48.5 3.4 26 177-202 3-28 (186)
406 PF03029 ATP_bind_1: Conserved 95.6 0.012 2.6E-07 50.4 3.6 32 183-216 1-32 (238)
407 KOG0727 26S proteasome regulat 95.6 0.026 5.6E-07 48.2 5.4 49 156-204 154-215 (408)
408 cd03116 MobB Molybdenum is an 95.6 0.016 3.5E-07 46.3 4.0 27 179-205 2-28 (159)
409 CHL00060 atpB ATP synthase CF1 95.6 0.088 1.9E-06 49.5 9.3 101 177-278 160-283 (494)
410 PF06309 Torsin: Torsin; Inte 95.6 0.037 8E-07 42.2 5.7 46 157-202 25-77 (127)
411 PRK09825 idnK D-gluconate kina 95.6 0.012 2.7E-07 47.9 3.3 25 179-203 4-28 (176)
412 PRK14526 adenylate kinase; Pro 95.6 0.05 1.1E-06 45.7 7.1 23 181-203 3-25 (211)
413 cd02029 PRK_like Phosphoribulo 95.6 0.056 1.2E-06 46.9 7.4 25 180-204 1-25 (277)
414 PRK12339 2-phosphoglycerate ki 95.6 0.013 2.9E-07 48.6 3.6 26 178-203 3-28 (197)
415 PF13177 DNA_pol3_delta2: DNA 95.5 0.18 4E-06 40.4 10.0 43 161-203 1-44 (162)
416 cd02117 NifH_like This family 95.5 0.016 3.5E-07 48.6 4.0 26 179-204 1-26 (212)
417 COG3903 Predicted ATPase [Gene 95.5 0.018 3.9E-07 52.3 4.4 87 177-270 13-100 (414)
418 PLN02459 probable adenylate ki 95.5 0.093 2E-06 45.4 8.6 25 179-203 30-54 (261)
419 PRK14738 gmk guanylate kinase; 95.5 0.013 2.9E-07 48.9 3.4 25 177-201 12-36 (206)
420 PRK08154 anaerobic benzoate ca 95.5 0.023 5.1E-07 50.6 5.1 27 177-203 132-158 (309)
421 PRK13900 type IV secretion sys 95.5 0.0089 1.9E-07 53.8 2.4 104 177-286 159-262 (332)
422 TIGR02546 III_secr_ATP type II 95.4 0.11 2.3E-06 48.4 9.4 91 176-270 143-247 (422)
423 COG1419 FlhF Flagellar GTP-bin 95.4 0.21 4.6E-06 45.6 11.0 39 162-200 183-226 (407)
424 COG1136 SalX ABC-type antimicr 95.4 0.013 2.8E-07 49.5 3.1 24 177-200 30-53 (226)
425 PRK11823 DNA repair protein Ra 95.4 0.039 8.5E-07 51.8 6.6 85 177-270 79-168 (446)
426 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.015 3.3E-07 48.9 3.5 23 178-200 29-51 (213)
427 PF02374 ArsA_ATPase: Anion-tr 95.4 0.039 8.5E-07 49.1 6.3 26 179-204 2-27 (305)
428 PRK15453 phosphoribulokinase; 95.4 0.019 4E-07 50.2 4.1 28 176-203 3-30 (290)
429 COG1936 Predicted nucleotide k 95.4 0.012 2.7E-07 47.1 2.7 21 179-199 1-21 (180)
430 PLN02200 adenylate kinase fami 95.4 0.016 3.4E-07 49.6 3.6 27 177-203 42-68 (234)
431 cd01428 ADK Adenylate kinase ( 95.4 0.014 3E-07 48.0 3.2 23 181-203 2-24 (194)
432 PLN02674 adenylate kinase 95.4 0.099 2.1E-06 44.9 8.4 26 178-203 31-56 (244)
433 PRK09302 circadian clock prote 95.4 0.1 2.3E-06 49.8 9.5 88 177-269 272-374 (509)
434 TIGR00962 atpA proton transloc 95.4 0.077 1.7E-06 50.3 8.3 97 177-277 160-273 (501)
435 cd02040 NifH NifH gene encodes 95.4 0.019 4.1E-07 49.9 4.0 26 179-204 2-27 (270)
436 PLN02796 D-glycerate 3-kinase 95.4 0.015 3.3E-07 52.2 3.4 28 177-204 99-126 (347)
437 PRK13343 F0F1 ATP synthase sub 95.4 0.065 1.4E-06 50.6 7.7 97 177-277 161-274 (502)
438 CHL00059 atpA ATP synthase CF1 95.3 0.1 2.2E-06 49.1 8.9 97 177-277 140-253 (485)
439 PRK13230 nitrogenase reductase 95.3 0.019 4.1E-07 50.3 4.0 26 179-204 2-27 (279)
440 PRK14531 adenylate kinase; Pro 95.3 0.017 3.8E-07 47.2 3.5 25 179-203 3-27 (183)
441 PRK07471 DNA polymerase III su 95.3 0.036 7.8E-07 50.6 5.8 51 154-204 16-67 (365)
442 PRK08099 bifunctional DNA-bind 95.3 0.016 3.4E-07 53.6 3.5 28 176-203 217-244 (399)
443 PF01926 MMR_HSR1: 50S ribosom 95.3 0.017 3.7E-07 43.3 3.1 21 181-201 2-22 (116)
444 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.033 7.1E-07 50.0 5.4 48 157-204 61-114 (358)
445 COG0237 CoaE Dephospho-CoA kin 95.3 0.016 3.4E-07 48.3 3.1 23 178-200 2-24 (201)
446 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.021 4.6E-07 40.6 3.6 25 180-204 1-25 (99)
447 PRK08058 DNA polymerase III su 95.3 0.13 2.8E-06 46.3 9.4 46 158-203 6-53 (329)
448 PRK07960 fliI flagellum-specif 95.3 0.038 8.2E-07 51.5 5.9 97 177-277 174-285 (455)
449 PRK13236 nitrogenase reductase 95.3 0.022 4.7E-07 50.5 4.2 30 175-204 3-32 (296)
450 PF01078 Mg_chelatase: Magnesi 95.3 0.036 7.9E-07 46.1 5.2 43 156-200 2-44 (206)
451 cd01124 KaiC KaiC is a circadi 95.3 0.058 1.3E-06 43.9 6.4 45 180-228 1-45 (187)
452 PLN02165 adenylate isopentenyl 95.2 0.018 3.9E-07 51.5 3.5 30 174-203 39-68 (334)
453 PRK13232 nifH nitrogenase redu 95.2 0.016 3.4E-07 50.7 3.1 26 179-204 2-27 (273)
454 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.2 0.016 3.5E-07 48.7 3.1 25 177-201 29-53 (218)
455 COG1100 GTPase SAR1 and relate 95.2 0.013 2.7E-07 49.2 2.4 26 179-204 6-31 (219)
456 PHA02530 pseT polynucleotide k 95.2 0.018 3.8E-07 51.0 3.4 24 179-202 3-26 (300)
457 cd02022 DPCK Dephospho-coenzym 95.2 0.015 3.3E-07 47.4 2.8 21 180-200 1-21 (179)
458 PF10662 PduV-EutP: Ethanolami 95.2 0.017 3.7E-07 45.2 2.9 24 179-202 2-25 (143)
459 COG1120 FepC ABC-type cobalami 95.2 0.017 3.6E-07 49.8 3.0 26 177-202 27-52 (258)
460 cd03114 ArgK-like The function 95.2 0.022 4.7E-07 45.0 3.5 25 180-204 1-25 (148)
461 cd03225 ABC_cobalt_CbiO_domain 95.2 0.017 3.6E-07 48.3 3.1 25 177-201 26-50 (211)
462 COG0003 ArsA Predicted ATPase 95.2 0.045 9.8E-07 48.9 5.9 47 178-226 2-48 (322)
463 PRK06851 hypothetical protein; 95.2 0.33 7.2E-06 44.2 11.5 36 176-212 212-247 (367)
464 KOG1970 Checkpoint RAD17-RFC c 95.2 0.086 1.9E-06 49.8 7.7 49 162-214 87-142 (634)
465 PRK08356 hypothetical protein; 95.2 0.017 3.6E-07 47.8 2.9 22 178-199 5-26 (195)
466 PRK09302 circadian clock prote 95.2 0.083 1.8E-06 50.5 8.0 89 177-269 30-141 (509)
467 PF00142 Fer4_NifH: 4Fe-4S iro 95.2 0.037 7.9E-07 47.7 5.0 43 179-223 1-43 (273)
468 TIGR00960 3a0501s02 Type II (G 95.2 0.017 3.7E-07 48.5 3.0 25 177-201 28-52 (216)
469 cd03238 ABC_UvrA The excision 95.1 0.018 3.8E-07 47.0 3.0 24 177-200 20-43 (176)
470 TIGR01166 cbiO cobalt transpor 95.1 0.018 3.9E-07 47.4 3.0 25 177-201 17-41 (190)
471 COG2019 AdkA Archaeal adenylat 95.1 0.023 4.9E-07 45.4 3.4 25 178-202 4-28 (189)
472 COG1126 GlnQ ABC-type polar am 95.1 0.018 3.9E-07 48.1 2.9 24 177-200 27-50 (240)
473 PRK13768 GTPase; Provisional 95.1 0.024 5.2E-07 49.0 3.9 26 179-204 3-28 (253)
474 cd04155 Arl3 Arl3 subfamily. 95.1 0.029 6.3E-07 45.0 4.2 25 177-201 13-37 (173)
475 smart00072 GuKc Guanylate kina 95.1 0.023 4.9E-07 46.6 3.5 25 178-202 2-26 (184)
476 TIGR01281 DPOR_bchL light-inde 95.1 0.024 5.3E-07 49.3 3.9 25 179-203 1-25 (268)
477 TIGR01042 V-ATPase_V1_A V-type 95.1 0.13 2.7E-06 49.3 8.7 104 169-276 216-344 (591)
478 PRK13894 conjugal transfer ATP 95.1 0.032 7E-07 49.9 4.6 100 177-286 147-246 (319)
479 TIGR01026 fliI_yscN ATPase Fli 95.1 0.085 1.8E-06 49.3 7.5 97 177-277 162-273 (440)
480 TIGR00017 cmk cytidylate kinas 95.1 0.023 5E-07 47.9 3.5 25 179-203 3-27 (217)
481 cd01130 VirB11-like_ATPase Typ 95.0 0.041 8.9E-07 45.2 4.9 105 166-278 14-120 (186)
482 cd04139 RalA_RalB RalA/RalB su 95.0 0.019 4.2E-07 45.3 2.9 23 180-202 2-24 (164)
483 PRK13764 ATPase; Provisional 95.0 0.068 1.5E-06 51.7 7.0 95 168-276 248-342 (602)
484 cd03269 ABC_putative_ATPase Th 95.0 0.02 4.4E-07 47.8 3.1 25 177-201 25-49 (210)
485 COG0714 MoxR-like ATPases [Gen 95.0 0.082 1.8E-06 47.6 7.2 64 159-229 26-89 (329)
486 TIGR02525 plasmid_TraJ plasmid 95.0 0.063 1.4E-06 49.0 6.4 101 169-276 141-243 (372)
487 cd03229 ABC_Class3 This class 95.0 0.022 4.7E-07 46.4 3.1 25 177-201 25-49 (178)
488 cd02032 Bchl_like This family 95.0 0.028 6E-07 48.9 4.0 26 179-204 1-26 (267)
489 TIGR02315 ABC_phnC phosphonate 95.0 0.02 4.4E-07 49.0 3.0 24 177-200 27-50 (243)
490 PHA02244 ATPase-like protein 95.0 0.089 1.9E-06 47.8 7.2 37 165-203 108-144 (383)
491 cd03261 ABC_Org_Solvent_Resist 95.0 0.02 4.4E-07 48.7 3.0 25 177-201 25-49 (235)
492 cd03256 ABC_PhnC_transporter A 95.0 0.02 4.4E-07 48.8 3.0 25 177-201 26-50 (241)
493 cd03222 ABC_RNaseL_inhibitor T 95.0 0.021 4.7E-07 46.5 3.0 26 177-202 24-49 (177)
494 TIGR00416 sms DNA repair prote 95.0 0.086 1.9E-06 49.6 7.4 85 177-270 93-182 (454)
495 cd03297 ABC_ModC_molybdenum_tr 95.0 0.022 4.9E-07 47.7 3.2 25 176-201 22-46 (214)
496 TIGR02673 FtsE cell division A 95.0 0.021 4.6E-07 47.8 3.1 25 177-201 27-51 (214)
497 PF09848 DUF2075: Uncharacteri 95.0 0.16 3.5E-06 46.1 9.0 41 179-219 2-42 (352)
498 PRK05537 bifunctional sulfate 95.0 0.048 1E-06 52.7 5.8 47 158-204 370-418 (568)
499 KOG3354 Gluconate kinase [Carb 95.0 0.17 3.7E-06 40.0 7.7 25 179-203 13-37 (191)
500 cd03293 ABC_NrtD_SsuB_transpor 94.9 0.022 4.7E-07 48.1 3.1 25 177-201 29-53 (220)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-33 Score=273.08 Aligned_cols=267 Identities=24% Similarity=0.378 Sum_probs=203.5
Q ss_pred HHHHHHHHHHhHhHHHHHhhhccccchHHhHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Q 022670 8 AFSSIVSEGARSLFKPIIRQISYMFKYQSYIDELKDKVKRLEYKRERVEIPVHQVTEQGDEIYKDVADWLNSVKEFTQGT 87 (294)
Q Consensus 8 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~a~d~ 87 (294)
.++..++++.+.+..+ . ..+...++.+..|+..|..++.++++++.++. .......|...+++++|+
T Consensus 4 ~~s~~~~~~~~~l~~~----~-------~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~- 70 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNRE----S-------ECLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYL- 70 (889)
T ss_pred EEEEehhhHHHHHHHH----H-------HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHH-
Confidence 3445566666655544 2 23334445666666777777778888887754 477899999999999999
Q ss_pred HHhhhhchhh-----------------hcccccccccc-chhHHhHHHHHHHHHHHHHHhHHhcCCCcccccC-CCCCcc
Q 022670 88 AKSITDDEDG-----------------AKKFCFKGLCP-NLISRYKLSKQAAKAAEAAASLVGKGNFSNVSYR-PTPKRA 148 (294)
Q Consensus 88 ~eD~ld~~~~-----------------~~~~~~~~~~~-~~~~r~~i~~~i~~~~~~l~~l~~~~~~~~~~~~-~~~~~~ 148 (294)
+||.++.+.- .++-|+.+.+. ++..-+.+.+++.+....++.+..+..+..+... .+....
T Consensus 71 ~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~ 150 (889)
T KOG4658|consen 71 AEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKV 150 (889)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhc
Confidence 9999873320 12335444443 4445667777777777777777766666555432 222222
Q ss_pred ccccccCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh-hcCCCCEEEEEEcCCCCChHHHHH
Q 022670 149 EHMEVKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM-EDNLFDEVVMAELTQNLDPQKIQD 227 (294)
Q Consensus 149 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~vs~~~~~~~~~~ 227 (294)
...+..+... +|.+..++++++.|.+++..+++|+||||+||||||++++|+.. ++++|+.++||+||+.++..+++.
T Consensus 151 e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~ 229 (889)
T KOG4658|consen 151 ETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ 229 (889)
T ss_pred ccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence 2333334444 99999999999999988889999999999999999999999988 889999999999999999999999
Q ss_pred HHHHHhCCCCCC--CCCHHHHHHHHHHHhcCCCeEEEEEeCCCCccccccccCCcCCCCCCccc
Q 022670 228 QLASDLGMKFDL--NDSIFHRAHQLCQRLKKEKRILIILDNIWTKLEFDKIGIPSGNKDEHVNG 289 (294)
Q Consensus 228 ~i~~~~~~~~~~--~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l~~~~~~~~~~~~~ 289 (294)
+|+..++..... ..+.+++...|.+.|++ |||||||||||+..+|+.|+.|||...+|||.
T Consensus 230 ~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~Kv 292 (889)
T KOG4658|consen 230 TILERLGLLDEEWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKV 292 (889)
T ss_pred HHHHHhccCCcccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHHhcCCCCCCccCCeEE
Confidence 999998774322 23457889999999999 99999999999999999999999999888864
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.87 E-value=6.3e-22 Score=174.40 Aligned_cols=125 Identities=30% Similarity=0.467 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC-
Q 022670 162 RMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD- 238 (294)
Q Consensus 162 r~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~- 238 (294)
|+.++++|.++|.+ .+.++|+|+||||+||||||.+++++...+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999998 689999999999999999999999987777899999999999999999999999999987633
Q ss_pred --CCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCccccccccCCcCCCCCCc
Q 022670 239 --LNDSIFHRAHQLCQRLKKEKRILIILDNIWTKLEFDKIGIPSGNKDEHV 287 (294)
Q Consensus 239 --~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l~~~~~~~~~~~ 287 (294)
...+.++....+.+.|++ ++|||||||||+...|+.+..++|..+.|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~ 130 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGS 130 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-
T ss_pred cccccccccccccchhhhcc-ccceeeeeeecccccccccccccccccccc
Confidence 336778899999999999 999999999999999999988888654443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=7.7e-15 Score=151.24 Aligned_cols=130 Identities=20% Similarity=0.351 Sum_probs=92.1
Q ss_pred cCccccccHHHHHHHHHHHhc--CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc---CCC---------
Q 022670 154 KDFAAFDSRMKVFQDVVEALK--DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL---TQN--------- 219 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v---s~~--------- 219 (294)
.+.++++|++..++++..+|. .++.++|+||||||+||||||+.+|+... .+|+..+|+.- +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 445779999999999998875 35789999999999999999999999776 56988877632 211
Q ss_pred --CC-hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCccccccccCCcCCCCCCcccCCCCC
Q 022670 220 --LD-PQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTKLEFDKIGIPSGNKDEHVNGIGRAI 294 (294)
Q Consensus 220 --~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l~~~~~~~~~~~~~~~s~~ 294 (294)
++ ...++..++.++-........ ....+++.|++ ||+||||||||+..+|+.+..... .-|.||+|
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~-----~~~~GsrI 327 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQ-----WFGSGSRI 327 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCc-----cCCCCcEE
Confidence 11 123445555554222111010 12567888998 999999999999999999876543 22566664
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.04 E-value=5.2e-09 Score=96.42 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=88.3
Q ss_pred ccccccHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
++.+.||+.+++.|..++.+ .....+.|+|++|+|||++++.++++.......-..+++++....+...++..|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 35688999999999888743 34566889999999999999999998765432345577777777788999999999
Q ss_pred HhCC-CCCC-CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 232 DLGM-KFDL-NDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 232 ~~~~-~~~~-~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
++.. +.+. ..+.++....+.+.++. ++..+|||||++..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 9865 2221 24566777888888864 26799999999875
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.99 E-value=9e-09 Score=93.84 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=85.3
Q ss_pred cccccHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhcC-CC---CEEEEEEcCCCCChHHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDN-LF---DEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~f---~~~~wv~vs~~~~~~~~~~~ 228 (294)
+.+.||+.+++.|..++.+ .....+.|+|++|+|||++++.+++...... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999998863 3456789999999999999999998764321 11 24577888877788899999
Q ss_pred HHHHhC---CCCCC-CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 229 LASDLG---MKFDL-NDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 229 i~~~~~---~~~~~-~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
|++++. .+.+. ..+..+....+.+.+.. +++++||||+++..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999983 33221 13455666677777742 37899999999987
No 6
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.93 E-value=4.6e-09 Score=81.22 Aligned_cols=94 Identities=19% Similarity=0.337 Sum_probs=70.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc---CCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED---NLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQR 253 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 253 (294)
+.+.+.|+|.+|+|||++++.+.+..... ..-...+|+.++...+...+...|+++++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999999876421 112356799999888999999999999988766556778888999999
Q ss_pred hcCCCeEEEEEeCCCCc
Q 022670 254 LKKEKRILIILDNIWTK 270 (294)
Q Consensus 254 L~~~kr~LiVlDdvw~~ 270 (294)
+...+..+||+||+...
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 88735569999999764
No 7
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.88 E-value=3.6e-09 Score=90.91 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC--CChHHHHHHHHHHhCC-CCCCCCCH-----HHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN--LDPQKIQDQLASDLGM-KFDLNDSI-----FHRA 247 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~~~~-~~~~~~~~-----~~~~ 247 (294)
.+...++|+|++|+|||||++.+|+..... +|+.++|+.++.. ++..++++.+...+-. ..+.+... ....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999988764 8999999998776 7999999998443311 11111111 1112
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCc-ccccccc
Q 022670 248 HQLCQRLKKEKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 248 ~~l~~~L~~~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
.....+...+++.++++|++..- ...+.+.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a~a~~ev~ 123 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLARAYNTVV 123 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhhhhhhhcc
Confidence 22222222249999999999876 4445543
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.76 E-value=1.7e-07 Score=81.72 Aligned_cols=96 Identities=18% Similarity=0.292 Sum_probs=64.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH--
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQR-- 253 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-- 253 (294)
.....+.|+|+.|+|||||++.+++...... + ..+|+ +....+..+++..|+..++.+... .+...+...+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHH
Confidence 4456889999999999999999998765321 1 22233 333457889999999988776433 3333333444333
Q ss_pred --h-cCCCeEEEEEeCCCCcc--ccccc
Q 022670 254 --L-KKEKRILIILDNIWTKL--EFDKI 276 (294)
Q Consensus 254 --L-~~~kr~LiVlDdvw~~~--~w~~l 276 (294)
+ .+ ++++||+||+|... .++.+
T Consensus 117 ~~~~~~-~~~vliiDe~~~l~~~~~~~l 143 (269)
T TIGR03015 117 EQFAAG-KRALLVVDEAQNLTPELLEEL 143 (269)
T ss_pred HHHhCC-CCeEEEEECcccCCHHHHHHH
Confidence 3 44 88999999999863 44444
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.76 E-value=4e-08 Score=80.49 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=34.9
Q ss_pred ccccHHHHHHHHHHHhc---CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCC
Q 022670 158 AFDSRMKVFQDVVEALK---DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF 208 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f 208 (294)
.|+||+++++.+...+. ....+.+.|+|.+|+|||+|.+.++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 37899999999999983 3467899999999999999999999988766334
No 10
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.76 E-value=2.9e-08 Score=89.35 Aligned_cols=106 Identities=16% Similarity=0.249 Sum_probs=70.7
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC--ChHHHHHHHHHHhCC-CCCCCCCHH
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL--DPQKIQDQLASDLGM-KFDLNDSIF 244 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~~~~-~~~~~~~~~ 244 (294)
+++++.. .+-...+|+|++|+|||||++.||++.... +|++++||.+++.. ...++++.|...+-. ..+.+....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 4444432 356778999999999999999999988875 89999999999887 788888888632211 122211111
Q ss_pred ----HHHHHHHHHh--cCCCeEEEEEeCCCCc-cccccc
Q 022670 245 ----HRAHQLCQRL--KKEKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 245 ----~~~~~l~~~L--~~~kr~LiVlDdvw~~-~~w~~l 276 (294)
+..-...+++ .+ ++.||++|++..- ...+.+
T Consensus 238 ~~~a~~~ie~Ae~~~e~G-~dVlL~iDsItR~arAqrev 275 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHG-KDVVILLDSITRLARAYNTV 275 (416)
T ss_pred HHHHHHHHHHHHHHHHcC-CCEEEEEEChHHHHHHHHhh
Confidence 1111122222 34 9999999999876 334444
No 11
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.6e-07 Score=83.79 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=89.4
Q ss_pred ccccHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh
Q 022670 158 AFDSRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL 233 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~ 233 (294)
.+.+|+.+++.+...|.. .....+.|+|..|+|||+.++.|.+.......=..+++|++-...+..+++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 377899999998887763 3344489999999999999999999887542222278999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCcc
Q 022670 234 GMKFDLNDSIFHRAHQLCQRLKK-EKRILIILDNIWTKL 271 (294)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~~ 271 (294)
+.......+..+..+.+.+.+.. ++.++||||++....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 63333335566677778777764 489999999998764
No 12
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.63 E-value=8.2e-08 Score=86.87 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=65.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC--CChHHHHHHHHHHhCCC-CCCCCCH-HHHHH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN--LDPQKIQDQLASDLGMK-FDLNDSI-FHRAH---- 248 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~~~~~-~~~~~~~-~~~~~---- 248 (294)
.-..++|+|++|+|||||++.+++..... +|+.++|+.++.. .++.++++.++..+-.. .+.+... ..+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 56779999999999999999999987754 7999999999966 79999999996554222 2221111 11222
Q ss_pred HHHHHhcCCCeEEEEEeCCCCc
Q 022670 249 QLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 249 ~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
........+++.+|++|++..-
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222222249999999999866
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=8.2e-07 Score=69.10 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCC
Q 022670 161 SRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLN 240 (294)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~ 240 (294)
|++..+..+...+.....+.+.|+|.+|+|||+|++.+++..... -..++++..++..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 577788888888877677889999999999999999999877521 2345566555433322211111000
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 241 DSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 241 ~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
............ +..+|++||++..
T Consensus 72 ----~~~~~~~~~~~~-~~~~lilDe~~~~ 96 (151)
T cd00009 72 ----LVRLLFELAEKA-KPGVLFIDEIDSL 96 (151)
T ss_pred ----hHhHHHHhhccC-CCeEEEEeChhhh
Confidence 001111222334 7889999999853
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=6e-08 Score=82.18 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 159 FDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
|+||+.+++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 6899999999999998777899999999999999999999997743
No 15
>PF05729 NACHT: NACHT domain
Probab=98.51 E-value=3.5e-07 Score=73.27 Aligned_cols=87 Identities=28% Similarity=0.373 Sum_probs=53.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEcCCCCChH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNL----FDEVVMAELTQNLDPQ---KIQDQLASDLGMKFDLNDSIFHRAHQLC 251 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 251 (294)
+++.|+|.+|+||||+++.++........ +...+|.+........ .+..-|..+..... ... ...+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~---~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---API---EELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhh---HHHHH
Confidence 57899999999999999999988876543 3456666666543332 23333333332111 111 11333
Q ss_pred HHhcCCCeEEEEEeCCCCcc
Q 022670 252 QRLKKEKRILIILDNIWTKL 271 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~~ 271 (294)
..+...+++|||||++++..
T Consensus 75 ~~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELE 94 (166)
T ss_pred HHHHcCCceEEEEechHhcc
Confidence 33333499999999998874
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.48 E-value=3.5e-07 Score=84.77 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.2
Q ss_pred cCccccccHHHHHHH---HHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQD---VVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|+++.+.. |..++.......+.++|++|+||||||+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 446788998888666 88888777778899999999999999999998665
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=5.4e-07 Score=80.54 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=64.3
Q ss_pred cccCccccccHHHHH---HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHH
Q 022670 152 EVKDFAAFDSRMKVF---QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 152 ~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
-+...++++|.++.+ ..|..++..+++..+-+||++|+||||||+.+...... .| ..+|...+-.+=+++
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ce-----EEeccccccHHHHHH
Confidence 345577888988877 45777787888999999999999999999999986663 23 333433222222333
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 229 LASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++... .....+ ++.+|++|+|..-
T Consensus 92 i~e~a~----------------~~~~~g-r~tiLflDEIHRf 116 (436)
T COG2256 92 IIEEAR----------------KNRLLG-RRTILFLDEIHRF 116 (436)
T ss_pred HHHHHH----------------HHHhcC-CceEEEEehhhhc
Confidence 332210 112235 9999999999875
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.43 E-value=4.5e-06 Score=81.86 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=80.5
Q ss_pred cccccHHHHHHHHHHHhcC----C-CccEEEEEecCCCcHHHHHHHHHHHhhhc---CCCC--EEEEEEcCCCCChHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKD----N-KHNIIGVYEMGGVGKTTLVKQVAKQVMED---NLFD--EVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~-~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~f~--~~~wv~vs~~~~~~~~~ 226 (294)
+.+.+|+.+.+.|..+|.+ . ...++.|+|++|+|||++++.|.+..... .... .+++|.+....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4567999999999888763 2 23567899999999999999999876431 1122 35677777777888999
Q ss_pred HHHHHHhCCCCCC-CCCHHHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 227 DQLASDLGMKFDL-NDSIFHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 227 ~~i~~~~~~~~~~-~~~~~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
..|.+++....+. ..+..+....+...+.. ....+||||||...
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 9999888433222 23444556666666532 13569999999865
No 19
>PTZ00202 tuzin; Provisional
Probab=98.41 E-value=5.3e-06 Score=75.74 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=70.7
Q ss_pred cCccccccHHHHHHHHHHHhcCC---CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDN---KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
.+...|+||+.++..|...|... ..+++.|.|++|+|||||++.+..... + .+++.-+. +..++++.|+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHH
Confidence 34568999999999999988632 346889999999999999999996443 1 12222222 7899999999
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHhcC-----CCeEEEEE
Q 022670 231 SDLGMKFDLNDSIFHRAHQLCQRLKK-----EKRILIIL 264 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~L~~-----~kr~LiVl 264 (294)
.+++.+.. ....++...|.+.|.. +++.+||+
T Consensus 331 ~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 331 KALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99997432 3334455555544431 36777776
No 20
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.40 E-value=3e-06 Score=78.00 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=75.1
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCC
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGM 235 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~ 235 (294)
..+++..+..++.+...|.. .+.|.++|++|+|||++|+.+++.......|..+.||++++.++..+++..+- .
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P 247 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----P 247 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----C
Confidence 34566777888888888764 45678899999999999999999886656788899999999988887764321 1
Q ss_pred CCCCCCCHHH-HHHHHHHHhcC-CCeEEEEEeCCCCcc
Q 022670 236 KFDLNDSIFH-RAHQLCQRLKK-EKRILIILDNIWTKL 271 (294)
Q Consensus 236 ~~~~~~~~~~-~~~~l~~~L~~-~kr~LiVlDdvw~~~ 271 (294)
......-... ..+.+....++ ++++++|+|++....
T Consensus 248 ~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 248 NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1000000111 12233333222 378999999998873
No 21
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.29 E-value=6.7e-06 Score=73.11 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=71.2
Q ss_pred ccccccHHHHHHHHHHHhc-----CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALK-----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
..+|+|+++.++.|..++. ......+.++|++|+|||+||+.+.+..... |. .+..+...... .+...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~~---~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LK---ITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--EE---EeccchhcCch-hHHHHH
Confidence 4678999999999888876 2346678999999999999999999876532 21 12222111222 233334
Q ss_pred HHhCCCC----CC--CCCHHHHHHHHHHHhcCCCeEEEEEeCCCCccccccc
Q 022670 231 SDLGMKF----DL--NDSIFHRAHQLCQRLKKEKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 231 ~~~~~~~----~~--~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l 276 (294)
..++... ++ ..+ ....+.+...+.+ .+..+|+++..+...|...
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMED-FRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhh-hheeeeeccCccccceeec
Confidence 4433221 11 011 2234557777777 7888999988877666543
No 22
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.28 E-value=3.7e-06 Score=74.42 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=66.3
Q ss_pred ccccccHHHHH---HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH
Q 022670 156 FAAFDSRMKVF---QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD 232 (294)
Q Consensus 156 ~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 232 (294)
..+.+|.++.+ ..|.+++..+.+..+.+||++|+||||||+.+....+... ..+|++|....-..=+++|+++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 45566666544 3455666678899999999999999999999998777543 4577777765555556666654
Q ss_pred hCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 233 LGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
... ...|.+ +|-+|.+|+|..-
T Consensus 213 aq~---------------~~~l~k-rkTilFiDEiHRF 234 (554)
T KOG2028|consen 213 AQN---------------EKSLTK-RKTILFIDEIHRF 234 (554)
T ss_pred HHH---------------HHhhhc-ceeEEEeHHhhhh
Confidence 321 112334 8899999999764
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.27 E-value=1.9e-06 Score=72.01 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=37.1
Q ss_pred ccCccccccHHHHHHHHHHHhc-----CCCccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 153 VKDFAAFDSRMKVFQDVVEALK-----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
+...++++|.++.+..+.-++. .+.+..+-+||++|+||||||+.+.+.....
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 4557899999988877655443 2357788999999999999999999988843
No 24
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=1.6e-05 Score=69.47 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCC---CccEEEEEecCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEcCCCCChHHHHHHHHHHhCC
Q 022670 163 MKVFQDVVEALKDN---KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN----LFDEVVMAELTQNLDPQKIQDQLASDLGM 235 (294)
Q Consensus 163 ~~~~~~l~~~l~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~~~~ 235 (294)
...++.|.+++... ...-+.|||..|.|||++++.+....-... .--.++.|.++..++...+...|+++++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34456666666533 456689999999999999999997553221 11257788999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 236 KFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+.....+...+...+...|+.-+--+||+|++.+.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 88666666666667667776546678899999875
No 25
>PF13173 AAA_14: AAA domain
Probab=98.21 E-value=2.9e-06 Score=65.51 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=55.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
.+++.|.|+.|+|||||+++++++.. .-..+++++.......... ..+....+.+...+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~~~~~~~~~~~~- 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPDLLEYFLELIKP- 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhhhHHHHHHhhcc-
Confidence 46899999999999999999998665 2344566655543221100 00023444444445
Q ss_pred CeEEEEEeCCCCccccccccCCcCC
Q 022670 258 KRILIILDNIWTKLEFDKIGIPSGN 282 (294)
Q Consensus 258 kr~LiVlDdvw~~~~w~~l~~~~~~ 282 (294)
+..+|+||++.....|......+-+
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d 85 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD 85 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH
Confidence 7888999999999888776555443
No 26
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.21 E-value=9.4e-06 Score=72.26 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred cccccHHHHHHHHHHHhcCCCc---cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh
Q 022670 157 AAFDSRMKVFQDVVEALKDNKH---NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL 233 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~ 233 (294)
..+.+|+.+...|..++.+... ..+-|+|..|+|||.+.+++++..... .+|+++-..++...++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 4566799999999999886543 345789999999999999999987432 48999999999999999999998
Q ss_pred C-CCCCCCC------CHHHHHHHHHH--HhcC-CCeEEEEEeCCCCccccccc
Q 022670 234 G-MKFDLND------SIFHRAHQLCQ--RLKK-EKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 234 ~-~~~~~~~------~~~~~~~~l~~--~L~~-~kr~LiVlDdvw~~~~w~~l 276 (294)
. .+.+... +.......+.+ ...+ ++.++||||++....+.+.+
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ 133 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAI 133 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchH
Confidence 5 2222111 11122233333 2222 26999999999887665543
No 27
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=4.1e-05 Score=69.94 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=83.8
Q ss_pred ccccccHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
...+.||+.+.+.+.+|+.. +....+.|.|.+|.|||.+...|+.+......=.+++++++..--....++..|+.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 56778999999999999874 35678999999999999999999987764322235577777766678888888887
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEEeCCCCc
Q 022670 232 DLGMKFDLNDSIFHRAHQLCQRLKKEK-RILIILDNIWTK 270 (294)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L~~~k-r~LiVlDdvw~~ 270 (294)
.+......+.+..+....+..+..+.+ .+|+|+|+++..
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 773322222223455666666666523 799999999865
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.07 E-value=3.7e-05 Score=69.17 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.8
Q ss_pred cCccccccHHHHHHHHHHHhc-----CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHH
Q 022670 154 KDFAAFDSRMKVFQDVVEALK-----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
....+++|++..++.+..++. ......+.++|++|+||||||+.+.+..... + .++..+. .....-+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 346789999999988877765 2346678999999999999999999977632 2 1122211 122233444
Q ss_pred HHHHhCCCC----CCCCC-HHHHHHHHHHHhcCCCeEEEEEeCCCCccccc
Q 022670 229 LASDLGMKF----DLNDS-IFHRAHQLCQRLKKEKRILIILDNIWTKLEFD 274 (294)
Q Consensus 229 i~~~~~~~~----~~~~~-~~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~ 274 (294)
++..+.... ++... .....+.+...+.+ .+..+|+|+-.+...+.
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIR 145 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCcccccee
Confidence 454443221 11000 01233456667777 78888888877665443
No 29
>PRK08118 topology modulation protein; Reviewed
Probab=98.05 E-value=2.6e-06 Score=68.95 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=29.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhc-CCCCEEEE
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMED-NLFDEVVM 213 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~w 213 (294)
+.|.|+|++|+||||||+.+++..... .+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999988764 45777774
No 30
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.04 E-value=1.2e-05 Score=68.38 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=29.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
-.++|+|..|+|||||...+..... ..|.++.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 3578999999999999999998776 56877766644
No 31
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.02 E-value=2.6e-05 Score=59.87 Aligned_cols=92 Identities=24% Similarity=0.138 Sum_probs=52.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
...+.|+|++|+||||+++.+........ ...+++..+........... .......... .........+.+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKAS-GSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCC-CCHHHHHHHHHHHHHhc
Confidence 35789999999999999999998666432 23455544433222222111 0011111111 23333444556666651
Q ss_pred CeEEEEEeCCCCcccc
Q 022670 258 KRILIILDNIWTKLEF 273 (294)
Q Consensus 258 kr~LiVlDdvw~~~~w 273 (294)
+..+|++|+++.....
T Consensus 78 ~~~viiiDei~~~~~~ 93 (148)
T smart00382 78 KPDVLILDEITSLLDA 93 (148)
T ss_pred CCCEEEEECCcccCCH
Confidence 3499999999988543
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=98.00 E-value=2.8e-05 Score=73.62 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=41.8
Q ss_pred cCccccccHHHHHHHHHHHhcCC----CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDN----KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~----~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|.+|+..- ..+.+.|+|++|+||||+|+.+++...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44677899999999998887632 268899999999999999999998764
No 33
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.99 E-value=2.9e-05 Score=65.75 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 161 SRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
+....++.+..++.......+.|+|+.|+|||+||+.+++..... ....++++++.
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~ 76 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE 76 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence 355677778887666677889999999999999999999876532 33456666553
No 34
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.98 E-value=3.5e-05 Score=74.90 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=79.3
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCC---EEEEEEcCC---CCChHHHHH
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFD---EVVMAELTQ---NLDPQKIQD 227 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~---~~~wv~vs~---~~~~~~~~~ 227 (294)
...++++|+...+..+...+.......+.|+|++|+||||||+.+++..+....+. ..-|+.+.. ..+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34567889988888888877666677899999999999999999998765433331 223444431 122222221
Q ss_pred HH---------------HHHhCCCC----------------CCCCC-HHHHHHHHHHHhcCCCeEEEEEeCCCCc--ccc
Q 022670 228 QL---------------ASDLGMKF----------------DLNDS-IFHRAHQLCQRLKKEKRILIILDNIWTK--LEF 273 (294)
Q Consensus 228 ~i---------------~~~~~~~~----------------~~~~~-~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w 273 (294)
.+ +...+... ++... .......|...|++ ++++++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 11 11111100 01011 12357788899998 9999998877765 457
Q ss_pred ccccCCcCC
Q 022670 274 DKIGIPSGN 282 (294)
Q Consensus 274 ~~l~~~~~~ 282 (294)
+.++..|+.
T Consensus 310 ~~ik~~~~~ 318 (615)
T TIGR02903 310 KYIKKLFEE 318 (615)
T ss_pred hhhhhhccc
Confidence 777655553
No 35
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.97 E-value=6.9e-05 Score=76.31 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=68.2
Q ss_pred cccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCC
Q 022670 157 AAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGM 235 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~ 235 (294)
..++.|...++.|-+ ....+++.|.|++|.||||++.+..+. +..++|+++.. ..++..++..++..+..
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 355566655554432 236789999999999999999998852 23689999964 45667777888777732
Q ss_pred CCCC-------------CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 236 KFDL-------------NDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 236 ~~~~-------------~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
.... ..+...+...+...|.. +.+++|||||+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~ 133 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLI 133 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcC
Confidence 1110 01222334444444432 38999999999775
No 36
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.97 E-value=4.4e-05 Score=68.72 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=43.0
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|++..++.|..++..+....+.++|+.|+||||+|+.+.+...
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 33567889999999999998877766789999999999999999998664
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=97.95 E-value=8.1e-05 Score=66.68 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=42.7
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|..+.++.|..++..++...+.++|++|+||||+|..+.+...
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 44677889988888898888877777788999999999999999998764
No 38
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.95 E-value=2.5e-05 Score=76.83 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=41.5
Q ss_pred ccCccccccHHHHHH---HHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQ---DVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...++++|.++.+. .|..++..++...+.++|++|+||||||+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345677889888774 577777777787889999999999999999998665
No 39
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.94 E-value=4.2e-05 Score=75.98 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=42.9
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++||+++++.+++.|......-+.++|++|+|||++|+.+.+...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999998877777788999999999999999998764
No 40
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.88 E-value=0.00018 Score=64.95 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=72.1
Q ss_pred HHHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE-EEEEEcCCC-CChHHHHHHHHHHhCCCCCCCCCH
Q 022670 167 QDVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE-VVMAELTQN-LDPQKIQDQLASDLGMKFDLNDSI 243 (294)
Q Consensus 167 ~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~~~~~~~~~~~~ 243 (294)
..+++.+.. .+..-+.|+|..|+|||||++.+.+..... +=+. ++|+.+.+. ..+.++++.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 347777664 355678999999999999999999877543 2233 477777764 577888888887765543221111
Q ss_pred H-----HHHHHHHHHhc-CCCeEEEEEeCCCCc-cccccccC
Q 022670 244 F-----HRAHQLCQRLK-KEKRILIILDNIWTK-LEFDKIGI 278 (294)
Q Consensus 244 ~-----~~~~~l~~~L~-~~kr~LiVlDdvw~~-~~w~~l~~ 278 (294)
. .....+.+++. .+++.+||+|++..- .....+..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~ 241 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVE 241 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhc
Confidence 1 12223333442 259999999999866 34444433
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.87 E-value=2.8e-05 Score=59.67 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 42
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.87 E-value=0.00017 Score=64.40 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=43.8
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|++..++.+..++.......+.++|..|+||||+++.+.+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 445678899999999999998777777899999999999999999987643
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=97.86 E-value=8.4e-05 Score=63.34 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=29.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT 217 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs 217 (294)
..+.+.++|++|+|||.|++++++....+ .....|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34568999999999999999999976533 3344677664
No 44
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00013 Score=68.62 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=42.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++....|...+..++. ..+.++|++|+||||+|+.+.+...
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999988888888887766 4578999999999999999998664
No 45
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=8.9e-05 Score=66.25 Aligned_cols=77 Identities=12% Similarity=0.291 Sum_probs=53.5
Q ss_pred ccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh----hcCCCCEEEEEEc-CCCCChHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM----EDNLFDEVVMAEL-TQNLDPQKIQDQL 229 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~----~~~~f~~~~wv~v-s~~~~~~~~~~~i 229 (294)
..+++|.+...+.|..++..++. ....++|+.|+||||+|+.++...- ...|.+...|... +......+ ++++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 35678988899999999987765 4557899999999999999998652 2345676666542 33334444 3445
Q ss_pred HHHh
Q 022670 230 ASDL 233 (294)
Q Consensus 230 ~~~~ 233 (294)
++.+
T Consensus 82 ~~~~ 85 (313)
T PRK05564 82 IEEV 85 (313)
T ss_pred HHHH
Confidence 5544
No 46
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00012 Score=69.07 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=61.8
Q ss_pred ccccccHHHHHHHHHHHhcC---C---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChH
Q 022670 156 FAAFDSRMKVFQDVVEALKD---N---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQ 223 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~---~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 223 (294)
+.++=|.+..+.+|.+++.+ . ..+=+.++|++|+|||.||+++.....+- ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 45666778878777777653 1 34558899999999999999999988864 3333322
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 224 KIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+|+.++. .+++..+-+...+.-.. -.|++++||++-.
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~-aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSN-APCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhcc-CCeEEEeeccccc
Confidence 2222221 14444444444444555 8999999999754
No 47
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.79 E-value=0.00011 Score=67.64 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=38.7
Q ss_pred CccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 155 DFAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.++.|++..+++|.+.+.. ...+-|.++|++|+|||+||+++++...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 356778899888888876531 2345689999999999999999998765
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00025 Score=64.66 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=42.3
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.++.++.|...+..++. ..+.++|+.|+||||+|+.+.+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4467889999999999998887664 4568999999999999999998765
No 49
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00013 Score=72.39 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=43.6
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEE-EEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNII-GVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi-~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|.++.+..|.+++..+++.-. .++|+.|+||||+|+.+++....
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4567899999999999999887776554 78999999999999999987653
No 50
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.77 E-value=0.00011 Score=74.01 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++||++++..+++.|.......+.++|.+|+||||||..+.+...
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 678999999999999998887777788999999999999999998764
No 51
>PRK08116 hypothetical protein; Validated
Probab=97.76 E-value=0.00016 Score=63.08 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=48.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEK 258 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~k 258 (294)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+......... .+ ...+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~--~~----~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK--ED----ENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc--cc----HHHHHHHhcC-C
Confidence 458899999999999999999988643 34456664 44556555544322111 11 2233455554 4
Q ss_pred eEEEEEeCCCC
Q 022670 259 RILIILDNIWT 269 (294)
Q Consensus 259 r~LiVlDdvw~ 269 (294)
. ||||||+-.
T Consensus 180 d-lLviDDlg~ 189 (268)
T PRK08116 180 D-LLILDDLGA 189 (268)
T ss_pred C-EEEEecccC
Confidence 4 899999943
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00017 Score=68.72 Aligned_cols=50 Identities=30% Similarity=0.357 Sum_probs=42.0
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..+..|..++..++. ..+.++|+.|+||||+|+.++....
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999887655 4467899999999999999998654
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00022 Score=67.65 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=42.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...++++|.++.++.|..++..++.. .+.++|++|+||||+|+.+++....
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44578899999999999998877654 4589999999999999999987754
No 54
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.76 E-value=0.00012 Score=69.06 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=38.9
Q ss_pred cCccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+.++.|.+..++.|.+.+.- ...+-+.++|++|+|||++|+++++....
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3456777888888877776531 13456899999999999999999997753
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.75 E-value=0.00012 Score=73.64 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=42.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++||+.+++.+++.|.....+-+.++|++|+|||++|..++....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877666778999999999999999998764
No 56
>PHA00729 NTP-binding motif containing protein
Probab=97.74 E-value=0.00019 Score=60.51 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=28.8
Q ss_pred HHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 168 DVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555556667899999999999999999998753
No 57
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=0.00013 Score=59.32 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=32.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEcCCCCChHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMED-NLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
.|.|+|++|+||||||+.+....... -+.+...|-.-....+..++...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~ 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADI 52 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHH
Confidence 58999999999999999998765432 234556664333333344444433
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00023 Score=67.61 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=43.8
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+....+++|.++.++.|..++..++..- +.++|+.|+||||+|+.+......
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3556789999999999999998776544 679999999999999999986643
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.72 E-value=0.00014 Score=66.38 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=39.3
Q ss_pred cCccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....++.|.+..++.|.+.+.- ...+-+.++|++|+|||+||+.+++...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456788999988888877531 1245589999999999999999998765
No 60
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0018 Score=62.29 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=65.2
Q ss_pred ccccccHHHHHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
.++.+|.+..++.+++++.- .+.++++.+|++|+|||.+|+.|+....- .|.. ++|..-.+..+|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kFfR---fSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KFFR---FSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ceEE---EeccccccHHhhc---
Confidence 56778999999999999863 36799999999999999999999998763 3432 3455444444431
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHhc---CCCeEEEEEeCCCCc
Q 022670 230 ASDLGMKFDLNDSIFHRAHQLCQRLK---KEKRILIILDNIWTK 270 (294)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~L~---~~kr~LiVlDdvw~~ 270 (294)
..-. .-.-.+-.++-++|+ . .+-||.||+|+..
T Consensus 482 -----GHRR--TYVGAMPGkiIq~LK~v~t-~NPliLiDEvDKl 517 (906)
T KOG2004|consen 482 -----GHRR--TYVGAMPGKIIQCLKKVKT-ENPLILIDEVDKL 517 (906)
T ss_pred -----ccce--eeeccCChHHHHHHHhhCC-CCceEEeehhhhh
Confidence 1100 001112233344443 4 6789999999654
No 61
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.70 E-value=0.00031 Score=66.84 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=35.3
Q ss_pred cCccccccHHHHHHHHHH---HhcC---------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVE---ALKD---------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+++.|.++.++++.+ ++.+ ...+-+.++|++|+|||+||+.++....
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 446677887766555444 3332 1234588999999999999999998654
No 62
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.69 E-value=0.0011 Score=52.30 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHHHhHhHHHHHhhhccccchHHhHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCcchHHHHHHHHHHHHH
Q 022670 4 VGMAAFSSIVSEGARSLFKPIIRQISYMFKYQSYIDELKDKVKRLEYKRERVEIPVHQVTEQGDEIYKDVADWLNSVKEF 83 (294)
Q Consensus 4 ~~~a~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~ 83 (294)
+++||++++++.+...+.... +....-+.-++.|.+.+..+...+.+-+..+...+...+.-+.+|.+.
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~-----------~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDAS-----------KKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHH
Confidence 667777888888777776652 233334566777777777788888877776666566657889999999
Q ss_pred HHHHHHhhhhchhhhccccccccccchhHHhHHHHHHHHHHHHHHhHHh
Q 022670 84 TQGTAKSITDDEDGAKKFCFKGLCPNLISRYKLSKQAAKAAEAAASLVG 132 (294)
Q Consensus 84 a~d~~eD~ld~~~~~~~~~~~~~~~~~~~r~~i~~~i~~~~~~l~~l~~ 132 (294)
..+ ++++++ .|..-.+.|+...++.+++|+++.+.+.....
T Consensus 75 L~~-g~~LV~-------k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEK-GKELVE-------KCSKVRRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHH-HHHHHH-------HhccccHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 999 999996 45544445677788889999999887776644
No 63
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.69 E-value=0.00017 Score=72.73 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=43.0
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++||+++++.+++.|.......+.++|.+|+|||+||..+.....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999877777788999999999999999998764
No 64
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00022 Score=68.91 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=42.3
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++.+..|.+++..++. ..+.++|..|+||||+|+.+.....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999999987765 5568999999999999999987654
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.63 E-value=0.00045 Score=61.70 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=42.1
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+....+++|.+...+.+..++..++. .++.++|++|+||||+|+.+++...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 35567889999999999999887664 5566699999999999999998653
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00028 Score=65.93 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=43.5
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...++++|.++.+..|..++..++.. .+.++|+.|+||||+|+.+......
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45678999999999999998887754 5789999999999999999986653
No 67
>PRK08727 hypothetical protein; Validated
Probab=97.60 E-value=0.00038 Score=59.49 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=39.0
Q ss_pred cccccc-HHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC
Q 022670 156 FAAFDS-RMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT 217 (294)
Q Consensus 156 ~~~~~g-r~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs 217 (294)
.++|++ -...+..+...........+.|+|..|+|||.|++++++..... ....+|+++.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~ 78 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQ 78 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHH
Confidence 444543 33444444444333445679999999999999999999876543 3345566654
No 68
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.60 E-value=0.00041 Score=63.85 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=38.2
Q ss_pred cCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.++.|.+...++|.+.+. . ...+-+.++|++|+|||+||+.+++...
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 446677888877777766543 1 1356789999999999999999998765
No 69
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00036 Score=61.98 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=62.0
Q ss_pred cccCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 152 EVKDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
|...+.++=|.++..++|.+... + +..+=|.+||++|+|||-||++|+++.... |+.|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEecc
Confidence 34457777788888888887754 1 245668899999999999999999977743 444432
Q ss_pred CCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 219 NLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
. ++.++-+ + +. .-+...+.+.-+....++|.+|+|+..
T Consensus 219 S----ElVqKYi---G------EG-aRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 219 S----ELVQKYI---G------EG-ARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred H----HHHHHHh---c------cc-hHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 2 2222211 1 11 123444555545447888888888543
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00028 Score=67.89 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=43.4
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+.+++|.++.++.|.+++..+++. .+.++|..|+||||+|+.+.+....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45678999999999999999877654 4588999999999999999986653
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00039 Score=67.11 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=43.0
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+.+...
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999987764 5668999999999999999998664
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.58 E-value=0.00027 Score=71.39 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=42.6
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++||++++..+++.|.......+.++|.+|+|||+++..+.....
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 577999999999999999877777778999999999999999998764
No 73
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00031 Score=59.91 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=59.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNL----FDEVVMAELTQNLDPQKIQDQLASDLGMKFD---------LNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 243 (294)
.-.++.|+|.+|+|||+|+.+++-....... -..++|+.....++..++.. +++..+.... ...+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 4678999999999999999999754322121 25788998887777655543 3333322110 01222
Q ss_pred H---HHHHHHHHHhcCC-CeEEEEEeCCCCc
Q 022670 244 F---HRAHQLCQRLKKE-KRILIILDNIWTK 270 (294)
Q Consensus 244 ~---~~~~~l~~~L~~~-kr~LiVlDdvw~~ 270 (294)
+ .....+.+.+... +--|||+|-+...
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~ 127 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTAL 127 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHH
Confidence 2 3345555666654 7889999999753
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00038 Score=65.87 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=43.0
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+....+++|.+..+..|...+..++. ..+.++|+.|+||||+|+.++.....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567889999999999887776654 57889999999999999999987653
No 75
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.57 E-value=0.00026 Score=60.10 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=64.4
Q ss_pred ccCccccccHHHHHHHHHH----HhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHH
Q 022670 153 VKDFAAFDSRMKVFQDVVE----ALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
....++++|.+..++.|.+ ++......-+.+||..|+|||+|++++.+....+. .--|.|++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------
Confidence 3446778888877766664 44455677889999999999999999998776543 122344321
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc---cccccccCCc
Q 022670 229 LASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK---LEFDKIGIPS 280 (294)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~---~~w~~l~~~~ 280 (294)
.-.+...+...|+. +. .||+|.+||+.=+ .....|+..+
T Consensus 90 ----------~L~~l~~l~~~l~~--~~-~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 90 ----------DLGDLPELLDLLRD--RP-YKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred ----------HhccHHHHHHHHhc--CC-CCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 00223333333331 33 8999999998755 2344454444
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.00057 Score=66.84 Aligned_cols=51 Identities=31% Similarity=0.360 Sum_probs=42.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+++++|.++.++.|.+++..+++ ..+.++|..|+||||+|+.+.+....
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999987764 45578999999999999999986653
No 77
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00035 Score=60.09 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=47.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
+...+.++|..|+|||.||.++.+..... ...+++++++ +++..|-...... .+. ..+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~----~~~----~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG----QSG----EKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc----chH----HHHHHHhc-
Confidence 34678999999999999999999987643 3344666554 4444443332110 111 12333343
Q ss_pred CCeEEEEEeCCCCc
Q 022670 257 EKRILIILDNIWTK 270 (294)
Q Consensus 257 ~kr~LiVlDdvw~~ 270 (294)
+-=||||||+-..
T Consensus 163 -~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 -KVDLLVLDEIGIQ 175 (248)
T ss_pred -CCCEEEEcCCCCC
Confidence 5678899999443
No 78
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.0005 Score=57.55 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=56.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh----CCC--CCCCCCHH---HHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL----GMK--FDLNDSIF---HRA 247 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~----~~~--~~~~~~~~---~~~ 247 (294)
.-+++-|+|.+|+|||+|+.++...... .-..++|+.... ++..++.+. .++. ..+ .-...+.. ...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4678999999999999999998876542 246788998865 666555443 2221 011 00012222 235
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 248 HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 248 ~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
..+.+.+...+.-+||+|-+...
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l 109 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTAL 109 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHH
Confidence 55555555435669999998653
No 79
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00077 Score=64.45 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=42.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.++.++.|..++..++.. .+.++|+.|+||||+|+.+.....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44678899999999999998877654 457899999999999999998664
No 80
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00065 Score=62.78 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=43.0
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...++++|.+...+.|..++..++..- +.++|+.|+||||+|..+.+....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445788999999999999988776654 778999999999999999987754
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00061 Score=66.22 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=43.4
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+....+++|.+..+..|..++..+++ ..+.++|..|+||||+|+.+.....
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 35567899999999999999987764 4678999999999999999988654
No 82
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00091 Score=61.11 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=42.5
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.+...+.+..++..++. ..+.++|+.|+||||+|..+.+...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467889999999999999987665 4788999999999999999987654
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0009 Score=63.01 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=41.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 45678999999999999888877664 78899999999999999998754
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.00051 Score=66.66 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=42.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|.+..+..|...+..+++.- +.++|..|+||||+|+.+.+....
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 456789999999999999988776544 578999999999999999986654
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.00067 Score=65.09 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=42.8
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|++..++.|..++..++. ..+.++|+.|+||||+|+.+......
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567889999999999999876654 46789999999999999999987643
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.0014 Score=61.38 Aligned_cols=87 Identities=18% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHH
Q 022670 167 QDVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFH 245 (294)
Q Consensus 167 ~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 245 (294)
.....+... +....+.|+|..|+|||.|++++++.......=..++|++. .+++.++...+... +.
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~-- 184 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL-- 184 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH--
Confidence 344444432 23567999999999999999999998764321124556643 45556655544311 11
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 246 RAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 246 ~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
..+.+.++. +.-+|+|||+..
T Consensus 185 --~~f~~~~~~-~~dvLlIDDi~~ 205 (440)
T PRK14088 185 --NEFREKYRK-KVDVLLIDDVQF 205 (440)
T ss_pred --HHHHHHHHh-cCCEEEEechhh
Confidence 223333333 445677777764
No 87
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=0.00011 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998764
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.49 E-value=0.00056 Score=59.44 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+.++|++|+||||+|+.+++...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999988653
No 89
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.49 E-value=0.0011 Score=56.23 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC------CEEEEEEcCCCCChHHHHHHHHHHhCCC---------CCCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF------DEVVMAELTQNLDPQKIQDQLASDLGMK---------FDLND 241 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f------~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------~~~~~ 241 (294)
.-.++.|+|.+|+|||+|+.++....... - ..++|+.....++...+. .+....... .....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~--~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP--GELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc--cccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 46789999999999999999998654321 2 456888887777765554 333332211 01113
Q ss_pred CHHHHHHHHHHHhc---CCCeEEEEEeCCCCc
Q 022670 242 SIFHRAHQLCQRLK---KEKRILIILDNIWTK 270 (294)
Q Consensus 242 ~~~~~~~~l~~~L~---~~kr~LiVlDdvw~~ 270 (294)
+.+++...+...++ ..+--|||+|.+...
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 45555555555543 326679999999754
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00019 Score=71.11 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=41.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++++||+.+++.+++.|.......+.++|.+|+|||+||+.++...
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999998887655667799999999999999999865
No 91
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.43 E-value=0.0026 Score=63.75 Aligned_cols=48 Identities=31% Similarity=0.253 Sum_probs=38.3
Q ss_pred ccccccHHHHHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+++|.+..++.+.+++.. .+..++.++|++|+|||++|+.+.....
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34577888888888886541 2345799999999999999999998775
No 92
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0025 Score=61.46 Aligned_cols=48 Identities=31% Similarity=0.232 Sum_probs=41.3
Q ss_pred ccccccHHHHHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.+|.++.++.|+++|.- -+..++++||++|+|||.|++.|+....
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 45678899999999999862 2568999999999999999999999877
No 93
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.41 E-value=0.00028 Score=58.60 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=33.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC-CCCChHHHHHHHHHHhCC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT-QNLDPQKIQDQLASDLGM 235 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~~~~ 235 (294)
++|.++|+.|+||||.+..++.....+ .. .+..++.- ......+-++...+.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~-~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GK-KVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cc-cceeecCCCCCccHHHHHHHHHHHhcc
Confidence 689999999999999999888877654 22 23334332 222334444444444443
No 94
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.41 E-value=0.0014 Score=56.88 Aligned_cols=98 Identities=15% Similarity=0.286 Sum_probs=62.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC-CEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH---
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF-DEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI--- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~--- 243 (294)
+-+-++|.|..|+|||||++.+++..+.+ | +.++++-+.+.. ...++.+++.+.=..+ .+++.-.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 56778999999999999999999988743 5 456677777654 4466666665431111 1111111
Q ss_pred -HHHHHHHHHHhcC--CCeEEEEEeCCCCc-cccccc
Q 022670 244 -FHRAHQLCQRLKK--EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 -~~~~~~l~~~L~~--~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++||++||+..- ....++
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~rei 182 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEV 182 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHH
Confidence 1223446677731 39999999999776 344444
No 95
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.40 E-value=0.00048 Score=56.06 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=28.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA 214 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv 214 (294)
...+|.+.|+.|+||||+|+.++..... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Confidence 4568999999999999999999988763 35554444
No 96
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.40 E-value=0.0016 Score=57.32 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=48.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEcCC-CCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED-NLFDEVVMAELTQ-NLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRL 254 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L 254 (294)
+.+++.++|+.|+||||++..+......+ ..+. +..++.-. .....+.+....+.++.+.....+..++...+. .+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~-V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKK-VALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCe-EEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hc
Confidence 45799999999999999999998866543 2233 33344322 223334444444445544433234444433333 34
Q ss_pred cCCCeEEEEEeCC
Q 022670 255 KKEKRILIILDNI 267 (294)
Q Consensus 255 ~~~kr~LiVlDdv 267 (294)
.+ . =+|++|..
T Consensus 271 ~~-~-d~vliDt~ 281 (282)
T TIGR03499 271 RD-K-DLILIDTA 281 (282)
T ss_pred cC-C-CEEEEeCC
Confidence 43 3 47777753
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.39 E-value=0.0016 Score=58.99 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=42.1
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.....
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467889999999999999887664 4577899999999999999998754
No 98
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.39 E-value=0.00091 Score=56.69 Aligned_cols=88 Identities=23% Similarity=0.289 Sum_probs=54.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH----hCCC--CCCCCCHHH---HH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD----LGMK--FDLNDSIFH---RA 247 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~----~~~~--~~~~~~~~~---~~ 247 (294)
.-.++.|+|.+|+|||+|+.++....... -..++|+... .++...+. ++... +..+ .....+..+ ..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 46789999999999999999998766432 4667888876 55554443 22221 1000 011123322 33
Q ss_pred HHHHHHhcCCCeEEEEEeCCCC
Q 022670 248 HQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 248 ~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
..+...++. +--+||+|.+..
T Consensus 98 ~~~~~~~~~-~~~lvVIDsi~a 118 (225)
T PRK09361 98 RKAEKLAKE-NVGLIVLDSATS 118 (225)
T ss_pred HHHHHHHHh-cccEEEEeCcHH
Confidence 444555555 788999999853
No 99
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0013 Score=63.29 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=43.0
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++.++.|..++..++..- ..++|+.|+||||+|+.+.....
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999998877655 57899999999999999998665
No 100
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=0.0002 Score=69.36 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=42.0
Q ss_pred ccCccccccHHHHHHHHHHHhcCC-----CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDN-----KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...+++++.++.++.+..|+... ..+++.|+|+.|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678899999999999988753 346799999999999999999997654
No 101
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0014 Score=63.61 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=42.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|.+..+..|..++..++..- +.++|+.|+||||+|..+......
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456788999999999999888766644 789999999999999999987654
No 102
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0009 Score=58.12 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=61.5
Q ss_pred cccccHHHHHHHHHHHhc----------CC--CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHH
Q 022670 157 AAFDSRMKVFQDVVEALK----------DN--KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQK 224 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 224 (294)
.++-|.+...+.|.+... .. ..+-|.++|++|.||++||++|...... .|.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehH----H
Confidence 355566666666666532 11 3577999999999999999999986653 34555543 2
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 225 IQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+..+ +. ...+.+...|.+.-+.+|.-+|.+|+|++.
T Consensus 202 LvSK---------Wm-GESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 202 LVSK---------WM-GESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HHHH---------Hh-ccHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 2111 11 223456777777776669999999999753
No 103
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.33 E-value=0.0031 Score=61.90 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=68.9
Q ss_pred HHHHHhcCC-CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCCCCC------
Q 022670 168 DVVEALKDN-KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMKFDL------ 239 (294)
Q Consensus 168 ~l~~~l~~~-~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~~~~------ 239 (294)
.|.+.|.+. +.+.+.|.-+.|.|||||+.+...... .=..+.|.++.. ..++..+++-++..++.-.+.
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~ 102 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQ 102 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHH
Confidence 355555544 799999999999999999999987222 235689999986 467888888888887532111
Q ss_pred -------CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 240 -------NDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 240 -------~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
..+...+.+.+..-|.. .+++++||||..-.
T Consensus 103 ~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli 141 (894)
T COG2909 103 TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLI 141 (894)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 12233344444444443 47899999998655
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.33 E-value=0.0012 Score=56.43 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 163 MKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
...+..+..+........+.|+|+.|+|||+|++++++..... -..+.++++..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~ 83 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHH
Confidence 3455666666555556789999999999999999999876532 23455666643
No 105
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.32 E-value=0.001 Score=55.89 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=42.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+++|.+..++.|.-+..+.+..-+.|.||+|+||||-+..+.+..--
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 5678999988888888878888999999999999999999888876643
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0019 Score=59.36 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=39.4
Q ss_pred ccccccHHHHHHHHHHHhcCCC----------ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNK----------HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++|.+..++.|..++.... ..-+.++|+.|+|||++|..+....-
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4578899999999999887653 34578999999999999999987654
No 107
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.29 E-value=0.00058 Score=61.46 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=45.6
Q ss_pred ccccHHHHHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHHhhhc-----CCCCEEEE
Q 022670 158 AFDSRMKVFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQVMED-----NLFDEVVM 213 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-----~~f~~~~w 213 (294)
+++|.++.++.+++++.. ...+++.++|++|+||||||+.+.+..... ..|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 789999999999998864 246889999999999999999999887652 24555566
No 108
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.00045 Score=59.55 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=42.7
Q ss_pred cCccccccHHHHHHHHHHHhc-----CCCccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 154 KDFAAFDSRMKVFQDVVEALK-----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
....+++|.++.++.|-=++. .+.+--+.++|++|.||||||..+.+...+.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 446789998888877766655 3457779999999999999999999988865
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.28 E-value=0.0012 Score=61.11 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=45.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
...+.|+|..|+|||.|++++++.......=..+++++ ..++...+...+... . ...+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~----~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----K----MEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----C----HHHHHHHHHh-
Confidence 46789999999999999999999876432112345554 334444554444211 1 1223334433
Q ss_pred CeEEEEEeCCCCc
Q 022670 258 KRILIILDNIWTK 270 (294)
Q Consensus 258 kr~LiVlDdvw~~ 270 (294)
.-+|+|||+...
T Consensus 200 -~dlLiiDDi~~l 211 (405)
T TIGR00362 200 -VDLLLIDDIQFL 211 (405)
T ss_pred -CCEEEEehhhhh
Confidence 236677777643
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0016 Score=65.24 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=42.7
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.+++|.+..++.|..++..+++.- +.++|..|+||||+|+.+.+...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 446788999999999999998877654 67999999999999999988775
No 111
>CHL00176 ftsH cell division protein; Validated
Probab=97.27 E-value=0.0014 Score=63.88 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=54.1
Q ss_pred CccccccHHHHH---HHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCCh
Q 022670 155 DFAAFDSRMKVF---QDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDP 222 (294)
Q Consensus 155 ~~~~~~gr~~~~---~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 222 (294)
...++.|.++.. ..+++++... ..+-+.++|++|+|||+||++++...... ++.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccH----
Confidence 345666765544 4455555432 23568999999999999999999866421 233321
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 223 QKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.++... .. + .....+...+...... .+++|+|||+...
T Consensus 250 s~f~~~-~~--g------~~~~~vr~lF~~A~~~-~P~ILfIDEID~l 287 (638)
T CHL00176 250 SEFVEM-FV--G------VGAARVRDLFKKAKEN-SPCIVFIDEIDAV 287 (638)
T ss_pred HHHHHH-hh--h------hhHHHHHHHHHHHhcC-CCcEEEEecchhh
Confidence 111110 00 0 1122223334444455 8899999999653
No 112
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.26 E-value=0.0017 Score=54.89 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=29.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEE
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAE 215 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~ 215 (294)
....+.|+|..|+|||.|.+++++.......=..+++++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456899999999999999999999776432222455663
No 113
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0071 Score=58.86 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=59.9
Q ss_pred ccccccHHHHHHHHHHHhcC---------C---CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChH
Q 022670 156 FAAFDSRMKVFQDVVEALKD---------N---KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQ 223 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~---------~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 223 (294)
-+++=|.++.+..|.+-+.- . +..=|.+||++|+|||-||++|+....- .|++|-.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----
Confidence 45666788888888876541 2 2445788999999999999999987663 24444432
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 224 KIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
++++-- ++ ++++ -...+.++-+.-+.|+|.+|++++.
T Consensus 740 ELLNMY---VG------qSE~-NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMY---VG------QSEE-NVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHH---hc------chHH-HHHHHHHHhhccCCeEEEecccccc
Confidence 222111 11 2222 2344444444348999999999775
No 114
>PRK06696 uridine kinase; Validated
Probab=97.26 E-value=0.0006 Score=57.84 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhc---CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 161 SRMKVFQDVVEALK---DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 161 gr~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|...++.|.+.+. .....+|+|.|.+|+||||||+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35667777777775 346789999999999999999999987753
No 115
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.26 E-value=0.0012 Score=58.90 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=57.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF-----DLNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 251 (294)
.-+++-|+|++|+||||||.++....... =..++|+...+.++.. .+++++.+. ..+.+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46789999999999999999877655422 3456788776655553 234444331 11234555666665
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
..++.+.--+||+|-|-..
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 5555436789999998654
No 116
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00088 Score=58.79 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=53.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhc--CCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhc
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMED--NLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLK 255 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 255 (294)
-++|.++|++|.|||+|.++++++..++ +.|....-+.++...-+.+.+.+ ...-...+..++.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE----------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE----------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh----------hhhHHHHHHHHHHHHHh
Confidence 4778999999999999999999988664 34555555666543222222211 11334556677777777
Q ss_pred C-CCeEEEEEeCCCCc
Q 022670 256 K-EKRILIILDNIWTK 270 (294)
Q Consensus 256 ~-~kr~LiVlDdvw~~ 270 (294)
+ +.-+.+.+|+|.+.
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 6 23445667888543
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.003 Score=59.73 Aligned_cols=51 Identities=24% Similarity=0.148 Sum_probs=42.3
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+....+++|.+.....|..++..++..- ..++|+.|+||||+|+.+.....
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999998766554 56799999999999999988654
No 118
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.24 E-value=0.0048 Score=52.99 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCC
Q 022670 163 MKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLN 240 (294)
Q Consensus 163 ~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~ 240 (294)
...+..+.++..+ .....+.++|.+|+|||+|+.++.+..... -..+++++ ..+++..+-.... . ..
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~-~~- 150 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N-SE- 150 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h-cc-
Confidence 3345555555542 234578999999999999999999987643 23445553 4455555443332 1 11
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 241 DSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 241 ~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+. ..+.+.+.+ .=||||||+-..
T Consensus 151 ~~~----~~~l~~l~~--~dlLvIDDig~~ 174 (244)
T PRK07952 151 TSE----EQLLNDLSN--VDLLVIDEIGVQ 174 (244)
T ss_pred ccH----HHHHHHhcc--CCEEEEeCCCCC
Confidence 222 223344553 347788999765
No 119
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.24 E-value=0.0031 Score=49.83 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=30.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCC
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLD 221 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 221 (294)
++.|+|.+|+||||++..+...... .-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3689999999999999999886653 235677777765543
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0031 Score=61.23 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=41.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|..++..++. ..+.++|..|+||||+|+.+.+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467889999999999998887654 4467899999999999999998764
No 121
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.22 E-value=0.0016 Score=58.69 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....++|||++|+|||.+|+++++....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 4678999999999999999999998874
No 122
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0012 Score=63.60 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=51.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC--CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhc
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN--LDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLK 255 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 255 (294)
..-|.|.|..|+|||+|++.+++... +++.-++..++++.- -..+.+++. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 45688999999999999999998766 344555566666632 223333332 2334456666
Q ss_pred CCCeEEEEEeCCCCc
Q 022670 256 KEKRILIILDNIWTK 270 (294)
Q Consensus 256 ~~kr~LiVlDdvw~~ 270 (294)
- ..-+|||||+...
T Consensus 493 ~-~PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 Y-APSIIVLDDLDCL 506 (952)
T ss_pred h-CCcEEEEcchhhh
Confidence 6 8999999999654
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.22 E-value=0.00084 Score=62.44 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=38.2
Q ss_pred cCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.++.|.+..++.|.+.+. + ...+-+.++|++|+|||+||+++++...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 445677888888877777653 1 1345688999999999999999998765
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=97.21 E-value=0.0039 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.++|.+|+||||+|+.+++...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478899999999999999988654
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.20 E-value=0.0016 Score=61.20 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=34.5
Q ss_pred HHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 165 VFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 165 ~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
.......+... ...+.+.|+|..|+|||+|++++.+.......-..+++++.
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 34444444432 23577999999999999999999998764322233456643
No 126
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0024 Score=61.83 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=43.1
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|.+++..++. .-+.++|+.|+||||+|+.+.+...
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 4567899999999999999887764 4688999999999999999998665
No 127
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.19 E-value=0.0013 Score=58.61 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=57.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF-----DLNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 251 (294)
.-+++-|+|++|+||||||.+++-..... -..++|+.....+++. .+.+++.+. ..+.+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 46788899999999999999987655422 3567788777666653 233343321 11234555666666
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
..++.+.--|||+|-|-..
T Consensus 127 ~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHhccCCCEEEEcchHhh
Confidence 5555447789999998643
No 128
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.19 E-value=0.0028 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++.++|++|+||||++..+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999987654
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.0016 Score=61.12 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=49.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
....+.|+|..|+|||.|++++.+.......-..++++ +..+++..+...+.... .....+.+.+++
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~ 206 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEICQ 206 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhcc
Confidence 35678999999999999999999866542222233444 34566677666654210 122334444443
Q ss_pred CCeEEEEEeCCCCc
Q 022670 257 EKRILIILDNIWTK 270 (294)
Q Consensus 257 ~kr~LiVlDdvw~~ 270 (294)
.-+|||||+...
T Consensus 207 --~dvLiIDDiq~l 218 (450)
T PRK14087 207 --NDVLIIDDVQFL 218 (450)
T ss_pred --CCEEEEeccccc
Confidence 347788998654
No 130
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.075 Score=47.77 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=29.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT 217 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs 217 (294)
...+.++|..|+|||.||..+.+..-.+ -..+++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH
Confidence 3779999999999999999999977643 2345666543
No 131
>PRK09354 recA recombinase A; Provisional
Probab=97.17 E-value=0.0018 Score=58.22 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=58.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF-----DLNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 251 (294)
.-+++-|+|++|+|||||+.++....... =..++|+..-..++.. .+++++.+. ..+.+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46788899999999999999987655422 3567888877776653 344444431 11234555666666
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
..++.++--|||+|-|-..
T Consensus 132 ~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHhhcCCCCEEEEeChhhh
Confidence 6665447789999998654
No 132
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00065 Score=64.21 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=46.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
..=|.+||++|||||-||++|++..+.. | ++|-.+ ++++.-. + +++ -.+..+.+.-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNkYV---G------ESE-rAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNKYV---G------ESE-RAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHHHh---h------hHH-HHHHHHHHHhhcC
Confidence 3447899999999999999999988743 3 444332 3332210 0 222 2345555555545
Q ss_pred CeEEEEEeCCCCc
Q 022670 258 KRILIILDNIWTK 270 (294)
Q Consensus 258 kr~LiVlDdvw~~ 270 (294)
-.|+|.+|+++..
T Consensus 604 aPCVIFFDEiDaL 616 (802)
T KOG0733|consen 604 APCVIFFDEIDAL 616 (802)
T ss_pred CCeEEEecchhhc
Confidence 8999999999653
No 133
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.17 E-value=0.0047 Score=50.79 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 168 DVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 168 ~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|.+.+..++. ..+.++|+.|+||||+|..+....-.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45566666665 56889999999999999999887643
No 134
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.15 E-value=0.0023 Score=53.96 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=52.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH----hCCC--CCCCCCHHHH---H
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD----LGMK--FDLNDSIFHR---A 247 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~----~~~~--~~~~~~~~~~---~ 247 (294)
.-.++.|.|.+|+|||||+.+++...... =..++|+.....+. +-++++... +..+ ...+.+..++ .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 46788999999999999999998766422 23567776654443 333344332 1111 0111233333 3
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 248 HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 248 ~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
..+...+.. +.-+||+|-+-..
T Consensus 94 ~~~~~~~~~-~~~lvvIDsi~~l 115 (218)
T cd01394 94 QETETFADE-KVDLVVVDSATAL 115 (218)
T ss_pred HHHHHHHhc-CCcEEEEechHHh
Confidence 345555555 5779999998653
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.14 E-value=0.001 Score=66.32 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=38.3
Q ss_pred CccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 155 DFAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++.|.+..++.|.+++.- ...+-+.++|++|+|||+||+.+++...
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 456678988888888776531 1246688999999999999999998664
No 136
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0041 Score=53.84 Aligned_cols=83 Identities=22% Similarity=0.299 Sum_probs=51.0
Q ss_pred HHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHH
Q 022670 168 DVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRA 247 (294)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 247 (294)
.+.+++. +..-+.++|.+|+|||.||.++.+..- +..+ .+.++++ .+++.++-..... ....
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~--------~~~~ 158 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE--------GRLE 158 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc--------CchH
Confidence 3444444 677889999999999999999999887 3323 3455644 3555555443322 1122
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 248 HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 248 ~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
..|...++ +-=|+||||+-..
T Consensus 159 ~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 159 EKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhh--cCCEEEEecccCc
Confidence 33344343 3457778888664
No 137
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.11 E-value=0.0039 Score=58.02 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=37.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC-CCCChHHHHHHHHHHhCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT-QNLDPQKIQDQLASDLGMK 236 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~~~~~ 236 (294)
...+|.++|..|+||||++..++...... .+.. ..+++. ..+...+.++.+.++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV-~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKV-GLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeE-EEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 46789999999999999999999877643 2332 223222 1223345556666666543
No 138
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0025 Score=59.53 Aligned_cols=50 Identities=28% Similarity=0.313 Sum_probs=38.9
Q ss_pred ccccccH---HHHHHHHHHHhcCC--------C-ccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 156 FAAFDSR---MKVFQDVVEALKDN--------K-HNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 156 ~~~~~gr---~~~~~~l~~~l~~~--------~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
++++-|. ..++++++++|.+. + .+=|.++|++|.|||-||++|.-...+-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 4555554 45778899999864 2 3558899999999999999999776653
No 139
>PRK08181 transposase; Validated
Probab=97.07 E-value=0.0034 Score=54.68 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 166 FQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
+..+-+|+. +...+.++|++|+|||.||..+.+..-.. ...+.|+++ .+++..+.
T Consensus 96 L~~~~~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~ 150 (269)
T PRK08181 96 IAAGDSWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQ 150 (269)
T ss_pred HHHHHHHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHH
Confidence 333335654 34558999999999999999999866432 233455543 45555543
No 140
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0013 Score=60.67 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCCCCCCCC
Q 022670 164 KVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMKFDLNDS 242 (294)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~~~~~~~ 242 (294)
.....+.+.+..... ++.|+|+.++|||||++.+....... .+++.--+.. +...+ .
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~--------------- 81 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-L--------------- 81 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-H---------------
Confidence 444555555443333 99999999999999997776544422 4444322211 11110 1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeCCCCccccccccCCcCCCCC
Q 022670 243 IFHRAHQLCQRLKKEKRILIILDNIWTKLEFDKIGIPSGNKDE 285 (294)
Q Consensus 243 ~~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l~~~~~~~~~ 285 (294)
+....+.+.-.. ++.+|+||+|.....|......+.|..+
T Consensus 82 --d~~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~ 121 (398)
T COG1373 82 --DLLRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGN 121 (398)
T ss_pred --HHHHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHcccc
Confidence 111112222222 6789999999999999887666665433
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.06 E-value=0.0066 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+.++|++|+||||+|+.+......
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999888876654
No 142
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.06 E-value=0.003 Score=56.29 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=59.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED----NLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL---------NDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~---------~~~~ 243 (294)
.-+++-|+|.+|+|||+|+.+++-..... ..=..++|+..-..|+++++.. ++++++.+... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45778899999999999999876432211 1113678999888888888754 56666543211 1233
Q ss_pred HHHH---HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 244 FHRA---HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~---~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++. ..+...+..++--|||+|-+-..
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 3333 33444444336678999998654
No 143
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.04 E-value=0.0053 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|+|.|..|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 144
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.04 E-value=0.0057 Score=56.83 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++.++|..|+||||++..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999999999998887654
No 145
>PRK04296 thymidine kinase; Provisional
Probab=97.02 E-value=0.0016 Score=53.81 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=49.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhcC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL--NDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~L~~ 256 (294)
.++.|+|..|.||||++.......... -..++.+ ...++.......+.++++..... ..+..++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 467889999999999999888876532 2222223 11112222233455555543321 1334555555555 333
Q ss_pred CCeEEEEEeCCCC
Q 022670 257 EKRILIILDNIWT 269 (294)
Q Consensus 257 ~kr~LiVlDdvw~ 269 (294)
+.-+||+|++.-
T Consensus 78 -~~dvviIDEaq~ 89 (190)
T PRK04296 78 -KIDCVLIDEAQF 89 (190)
T ss_pred -CCCEEEEEcccc
Confidence 555899999854
No 146
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.02 E-value=0.0033 Score=51.40 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=43.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
+..-+.++|..|+|||.||..+.+..-.+ .+. +.|++ ..+++..+- ..... .+.. .+.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~-v~f~~------~~~L~~~l~----~~~~~-~~~~----~~~~~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GYS-VLFIT------ASDLLDELK----QSRSD-GSYE----ELLKRLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHH----CCHCC-TTHC----HHHHHHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Ccc-eeEee------cCceecccc----ccccc-cchh----hhcCcccc
Confidence 45679999999999999999999866542 233 45564 345555542 22111 2221 22344443
Q ss_pred CCeEEEEEeCCCCc
Q 022670 257 EKRILIILDNIWTK 270 (294)
Q Consensus 257 ~kr~LiVlDdvw~~ 270 (294)
-=|+||||+-..
T Consensus 109 --~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 --VDLLILDDLGYE 120 (178)
T ss_dssp --SSCEEEETCTSS
T ss_pred --ccEeccccccee
Confidence 346679999765
No 147
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.01 E-value=0.004 Score=53.24 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=62.0
Q ss_pred ccccccHHHHHH---HHHHHhcCC------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHH
Q 022670 156 FAAFDSRMKVFQ---DVVEALKDN------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 156 ~~~~~gr~~~~~---~l~~~l~~~------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 226 (294)
.++++|.++.+. -|+++|.+. ..+.|..+|++|.|||-+|+++.+..++- |-.+ ...+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~l~v---------kat~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--LLLV---------KATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--eEEe---------chHHHH
Confidence 578889887764 477888754 36889999999999999999999977743 3222 233333
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 227 DQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 227 ~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+- . .+-...++.+.+.-+.--.|++.||+++-.
T Consensus 189 Geh---V-------Gdgar~Ihely~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 189 GEH---V-------GDGARRIHELYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred HHH---h-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 221 1 122234455554444337899999988754
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0051 Score=59.54 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=42.4
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++....|..++..++.. .+.++|+.|+||||+|+.+.+...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 45678999999999999998877664 457899999999999999988654
No 149
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.01 E-value=0.0059 Score=54.33 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC
Q 022670 161 SRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK 236 (294)
Q Consensus 161 gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~ 236 (294)
++........+++.. ...+-+.++|..|+|||.||.++++..-.+ .+. +.+++++ .++.++-..+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEHH------HHHHHHHHHHhc-
Confidence 455555555666552 145679999999999999999999987632 233 4566554 455555444321
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc--cccc
Q 022670 237 FDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK--LEFD 274 (294)
Q Consensus 237 ~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w~ 274 (294)
.+. .. ..+.++ +-=||||||+-.+ ..|.
T Consensus 206 ----~~~---~~-~l~~l~--~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 206 ----GSV---KE-KIDAVK--EAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred ----CcH---HH-HHHHhc--CCCEEEEecCCCccccHHH
Confidence 121 12 223344 4678899999755 4453
No 150
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.01 E-value=0.0062 Score=52.14 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=54.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC-------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF------------------- 237 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~------------------- 237 (294)
.-+++.|.|.+|+|||+|+.++....-. .=+.++|++... ++.++.+.+. +++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccc
Confidence 4688999999999999999986543321 134567777654 5555555432 222110
Q ss_pred -----------CCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 238 -----------DLNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 238 -----------~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
..+.+.+++...+.+.++..+.-+||+|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 01234556667777666542444699999865
No 151
>PRK06547 hypothetical protein; Provisional
Probab=97.00 E-value=0.0013 Score=53.52 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=28.6
Q ss_pred HHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 169 VVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 169 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...+......+|+|.|++|+||||||+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445556788999999999999999999998754
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0074 Score=58.83 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=42.8
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|.+..+..|..++..++. ..+.++|..|+||||+|+.++.....
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4467888999999999999887653 56789999999999999999987653
No 153
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.99 E-value=0.001 Score=63.19 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=42.4
Q ss_pred ccccccHHHHHHHHHHHhc------CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFDSRMKVFQDVVEALK------DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.+++|.++.++.|++.|. +.+.+++.++|++|+||||||+.+..-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468899999999999983 456789999999999999999999986664
No 154
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.98 E-value=0.0008 Score=55.74 Aligned_cols=25 Identities=44% Similarity=0.620 Sum_probs=23.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
||+|.|.+|+||||||+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998874
No 155
>PRK10536 hypothetical protein; Provisional
Probab=96.98 E-value=0.0053 Score=52.82 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=42.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEE
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVM 213 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~w 213 (294)
.+...+.++......++.++.+. .++.+.|..|+|||+||.++..+.-....|+..+-
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 33455677888888888888753 48999999999999999998885321233554433
No 156
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0019 Score=55.91 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...+.++|++|+|||+||..+....-
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 345689999999999999999987654
No 157
>PRK10867 signal recognition particle protein; Provisional
Probab=96.97 E-value=0.0059 Score=56.75 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=22.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.++|.+|+||||++..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999998888776554
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.0039 Score=58.37 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=44.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
.+.+.|+|+.|+|||+|++++++..... -..+++++ ...+...+...+... ....+++.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG---------EMQRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc---------hHHHHHHHccc-
Confidence 5778999999999999999999977642 22334553 334444444444211 11223444443
Q ss_pred CeEEEEEeCCCCc
Q 022670 258 KRILIILDNIWTK 270 (294)
Q Consensus 258 kr~LiVlDdvw~~ 270 (294)
.-++++||+...
T Consensus 203 -~dvLiIDDiq~l 214 (445)
T PRK12422 203 -VDALFIEDIEVF 214 (445)
T ss_pred -CCEEEEcchhhh
Confidence 346777887654
No 159
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0049 Score=59.59 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=41.5
Q ss_pred cCccccccHHHHHHHHHHHhcCCC-ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNK-HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..+..|..++..++ ...+.++|+.|+||||+|+.+.+...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 445678899888888999888766 46677899999999999999998665
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0078 Score=58.61 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=42.4
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccE-EEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNI-IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+...+.|..++..++..- +.++|+.|+||||+|..+.....
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 446788999999999999998877654 67999999999999999888653
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.95 E-value=0.0024 Score=60.27 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=34.3
Q ss_pred ccccccHHHHHHHHHHHhc-------C---CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALK-------D---NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++-|.+..++++.+... . ...+-|.++|++|+|||.+|+.+.+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566677666665554321 1 1346689999999999999999998765
No 162
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.95 E-value=0.025 Score=56.72 Aligned_cols=48 Identities=27% Similarity=0.207 Sum_probs=39.8
Q ss_pred ccccccHHHHHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+++|.+..++.++++|.. .+..++.++|++|+||||+++.+.....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999988762 2456899999999999999999998665
No 163
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.0057 Score=57.40 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=42.4
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+...
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4467889999999999999987765 5577899999999999999988654
No 164
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.95 E-value=0.0032 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|.|+|++|+||||+|+.+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999997654
No 165
>PRK06921 hypothetical protein; Provisional
Probab=96.94 E-value=0.0066 Score=52.91 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=29.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
....+.++|..|+|||.|+.++.+....+. -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 467799999999999999999999765321 234456654
No 166
>PRK09183 transposase/IS protein; Provisional
Probab=96.93 E-value=0.0036 Score=54.36 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+.|+|+.|+|||+||..+.....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999987643
No 167
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.91 E-value=0.00093 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~ 202 (294)
|+|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 168
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0067 Score=55.23 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=37.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMK 236 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~ 236 (294)
+..++.++|+.|+||||++..+......+.....+..++.-. .....+-++...+.++.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence 457899999999999999999998654321123344444321 233444555555555444
No 169
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.90 E-value=0.0033 Score=60.72 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=52.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhc-
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLK- 255 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~- 255 (294)
.-++..++|++|.||||||+-|+.+.... ++=++.|..-+...+-+.|...+... ..|.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYs-----VvEINASDeRt~~~v~~kI~~avq~~---------------s~l~a 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYS-----VVEINASDERTAPMVKEKIENAVQNH---------------SVLDA 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCce-----EEEecccccccHHHHHHHHHHHHhhc---------------ccccc
Confidence 35788999999999999999999877632 45678888777766666665444221 1221
Q ss_pred CCCeEEEEEeCCCCc
Q 022670 256 KEKRILIILDNIWTK 270 (294)
Q Consensus 256 ~~kr~LiVlDdvw~~ 270 (294)
+.+..-+|+|+|+..
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 126666788998775
No 170
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.89 E-value=0.0081 Score=51.23 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD------------------ 238 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~------------------ 238 (294)
..+++.|+|.+|+|||+|+.++....-. . =..++|++..+ ++.++++++ ++++.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-Q-GKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-C-CCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4688999999999999999998543221 1 24667887765 445565553 33332111
Q ss_pred --CCCCHHHHHHHHHHHhcCCCeEEEEEeCCC
Q 022670 239 --LNDSIFHRAHQLCQRLKKEKRILIILDNIW 268 (294)
Q Consensus 239 --~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw 268 (294)
...+.+.+...+.+.+...+.-+||+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012235566666666653245589999987
No 171
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.88 E-value=0.0011 Score=55.58 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999876
No 172
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.88 E-value=0.0098 Score=53.64 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=59.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh---cC-CCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME---DN-LFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL---------NDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~-~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~---------~~~~ 243 (294)
.-+++-|+|.+|+|||+|+.+++-.... .. .-...+|+..-..|.+.++.. +.++++.+... ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 3567779999999999999988643321 11 124679999999999988765 55666543211 1334
Q ss_pred HHHH---HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 244 FHRA---HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~---~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++. ..+...+...+--|||+|-+-..
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 4333 33333443325678999998654
No 173
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.88 E-value=0.016 Score=49.34 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+..+++|.|..|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999987664
No 174
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0021 Score=50.90 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=33.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK 236 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~ 236 (294)
.+|.|-|++|+||||+|+.+.++..-. ++ +.=.++++|....+.+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~----~v---------saG~iFR~~A~e~gms 45 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLK----LV---------SAGTIFREMARERGMS 45 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCc----ee---------eccHHHHHHHHHcCCC
Confidence 378999999999999999999888733 22 2335677777666654
No 175
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0031 Score=58.81 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=54.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHH----H
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLC----Q 252 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~ 252 (294)
.+..+.+.|++|+|||+||..+..... |..+--+ +++++. ..++......+. .
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKii------Spe~mi-------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKII------SPEDMI-------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEe------ChHHcc-------------CccHHHHHHHHHHHHHH
Confidence 455667889999999999999996544 7655322 222211 122222233333 3
Q ss_pred HhcCCCeEEEEEeCCCCccccccccCCcC
Q 022670 253 RLKKEKRILIILDNIWTKLEFDKIGIPSG 281 (294)
Q Consensus 253 ~L~~~kr~LiVlDdvw~~~~w~~l~~~~~ 281 (294)
.-+. +--.||+||+...-+|-.|++-|-
T Consensus 594 AYkS-~lsiivvDdiErLiD~vpIGPRfS 621 (744)
T KOG0741|consen 594 AYKS-PLSIIVVDDIERLLDYVPIGPRFS 621 (744)
T ss_pred hhcC-cceEEEEcchhhhhcccccCchhh
Confidence 3444 788999999999999999988774
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0086 Score=53.38 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=36.8
Q ss_pred ccccHHHHHHHHHHHhc-CCCccE-EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 158 AFDSRMKVFQDVVEALK-DNKHNI-IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+++.+.....+..+.. ..+... +.++|+.|+||||+|..+.+....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 35566777778888877 344555 899999999999999999987763
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.87 E-value=0.0029 Score=49.19 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHH
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
|.++|.+|+|||+||+.++..... ...-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999987732 2344688888888887643
No 178
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.011 Score=50.81 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=58.0
Q ss_pred cCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC
Q 022670 154 KDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL 220 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 220 (294)
..+.++-|-.+..++|.+... + +..+-|.++|++|.|||-+|++|.+..... | +.|-..
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvigs- 245 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIGS- 245 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----EeehhH-
Confidence 336677788888887777543 2 235668899999999999999999866532 3 322211
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 221 DPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 221 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
+-+++-+ + +. ..+...|.+--+..|-|+|.+|+|..
T Consensus 246 --elvqkyv----g------eg-armvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 --ELVQKYV----G------EG-ARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred --HHHHHHh----h------hh-HHHHHHHHHHhcccceEEEEeecccc
Confidence 1111111 0 01 11334444444444889999999854
No 179
>PRK08233 hypothetical protein; Provisional
Probab=96.85 E-value=0.001 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998664
No 180
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.011 Score=57.18 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=55.9
Q ss_pred cccccHHHHHHHHHHHhcC----------CC---ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChH
Q 022670 157 AAFDSRMKVFQDVVEALKD----------NK---HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQ 223 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----------~~---~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 223 (294)
+++-|..+.++-|.+.+.- .. ..-|.++|++|+|||.||.++......+ +++|-.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----
Confidence 4455555555555555541 12 2337899999999999999999765532 4555543
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 224 KIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++.+- ++ .+++ -...+.++-+.-|.|++.+|+..+.
T Consensus 736 ElL~Ky---IG------aSEq-~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 ELLSKY---IG------ASEQ-NVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred HHHHHH---hc------ccHH-HHHHHHHHhhccCCeEEEecccccc
Confidence 333332 11 2332 3344444444339999999998654
No 181
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.85 E-value=0.0014 Score=54.54 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=46.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE-EcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA-ELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv-~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
.+|.|+|+.|+||||++..+...... +...++++ .-+..+.... ...++.|-... .+.......++..|+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg----~~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTIEDPIEFVHES-KRSLINQREVG----LDTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEEcCCccccccC-ccceeeecccC----CCccCHHHHHHHHhcC-
Confidence 46899999999999999988776542 23333332 2111111000 00111111000 1122345566777776
Q ss_pred CeEEEEEeCCCCccccc
Q 022670 258 KRILIILDNIWTKLEFD 274 (294)
Q Consensus 258 kr~LiVlDdvw~~~~w~ 274 (294)
..=+|++|++.+.+.+.
T Consensus 74 ~pd~ii~gEird~e~~~ 90 (198)
T cd01131 74 DPDVILVGEMRDLETIR 90 (198)
T ss_pred CcCEEEEcCCCCHHHHH
Confidence 56688888887665443
No 182
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.85 E-value=0.011 Score=52.15 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...-+|+|.|..|+||||||+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999988766443
No 183
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.85 E-value=0.0074 Score=52.30 Aligned_cols=93 Identities=26% Similarity=0.305 Sum_probs=58.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcC---CC-CEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN---LF-DEVVMAELTQNLDPQKIQDQLASDLGMKFD---------LNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~f-~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 243 (294)
...+.=|+|.+|+|||.|+-+++-...... .. ..++|+.....|...++. +|++..+.+.+ ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 356778999999999999998875543211 11 368999998889888875 56665443211 11233
Q ss_pred HHHH---HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 244 FHRA---HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~---~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++. ..+...+.+++--|||+|.+-..
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 4433 33344443337889999998654
No 184
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.84 E-value=0.0011 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986555
No 185
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.84 E-value=0.0065 Score=54.30 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc---C-CCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED---N-LFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL---------NDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~-~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~---------~~~~ 243 (294)
...++-|+|.+|+|||+|+..++-..... . .-..++|+.....+...++ ..+.+.++..... ..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 46888999999999999999887532211 1 1135689988877777764 3445554432211 1233
Q ss_pred HHHH---HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 244 FHRA---HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~---~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++. ..+...+...+--|||+|-+-..
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~al 203 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATAL 203 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHHH
Confidence 3333 33333343336779999998654
No 186
>PRK07667 uridine kinase; Provisional
Probab=96.84 E-value=0.0021 Score=53.19 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=29.6
Q ss_pred HHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 167 QDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 167 ~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.+++.+.. ....+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455555553 34578999999999999999999987753
No 187
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.84 E-value=0.0063 Score=54.88 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=59.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN----LFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL---------NDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~---------~~~~ 243 (294)
...++-|+|.+|+|||+|+..++-...... .-..++|+..-..|.++++. +|++.++.+... ..+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 467788999999999999998875432111 11268999999988888764 556665543211 1233
Q ss_pred HHHHHHH---HHHhcCCCeEEEEEeCCCCc
Q 022670 244 FHRAHQL---CQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~~~l---~~~L~~~kr~LiVlDdvw~~ 270 (294)
+.+...+ ...+...+--|||+|-+-..
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~al 230 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATAL 230 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHHH
Confidence 4433333 23343337779999998654
No 188
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.006 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++.++|++|+||||++.++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 189
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.82 E-value=0.0012 Score=55.33 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=24.4
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998654
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.0082 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|+|..|+||||++..+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998886543
No 191
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0021 Score=50.94 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFD 209 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~ 209 (294)
..-|.|.||+|+|||||++.+.+..+.+. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 35689999999999999999999888643 54
No 192
>PTZ00301 uridine kinase; Provisional
Probab=96.81 E-value=0.0013 Score=55.30 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=23.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987664
No 193
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.80 E-value=0.013 Score=52.18 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=60.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
..+++-|+|..|+||||||-.+....... -..++|+.....+++..+ .+++.+.+. +.+.++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHHH
Confidence 46789999999999999999888765432 456889998887776443 344443211 234555566666
Q ss_pred HHhcCCCeEEEEEeCCCCccccccccCCcCCC
Q 022670 252 QRLKKEKRILIILDNIWTKLEFDKIGIPSGNK 283 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~~~w~~l~~~~~~~ 283 (294)
..++.+.--+||+|-|-..-.=..+...+.+.
T Consensus 125 ~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~ 156 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAALVPKAELEGEIGDQ 156 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-B-HHHHTTSTSST
T ss_pred HHhhcccccEEEEecCcccCCHHHHhhccccc
Confidence 66765466799999987663333343344433
No 194
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.79 E-value=0.01 Score=52.90 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNL----FDEVVMAELTQNLDPQKIQDQLASDLGMKFD---------LNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 243 (294)
...++-|+|.+|+|||+|+.+++-....... =..++|+.....++..++. ++++.++.+.. ...+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 4678889999999999999999866432110 1268999988888887765 44444443210 00111
Q ss_pred H---HHHHHHHHHhcCC--CeEEEEEeCCCCc
Q 022670 244 F---HRAHQLCQRLKKE--KRILIILDNIWTK 270 (294)
Q Consensus 244 ~---~~~~~l~~~L~~~--kr~LiVlDdvw~~ 270 (294)
+ .+...+.+.+... +--|||+|-+-..
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~ 204 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTSH 204 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchHh
Confidence 1 2334455555541 2459999998764
No 195
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.0097 Score=58.49 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=41.7
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|..++..+++. ...++|+.|+||||+|+.+....-
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 44678899999999999999877654 456899999999999999987654
No 196
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.011 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=23.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.++|+++|++|+||||++..+.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357899999999999999999987654
No 197
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.78 E-value=0.0074 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+++.++|++|+||||++..+.....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998876554
No 198
>PRK03839 putative kinase; Provisional
Probab=96.77 E-value=0.0013 Score=53.76 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998775
No 199
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.77 E-value=0.0079 Score=60.80 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHHhc---CCCccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 158 AFDSRMKVFQDVVEALK---DNKHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
+++||+.+++.|...+. .....++.+.|..|||||+|++.|......+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 36899999998888766 3567899999999999999999999876543
No 200
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.018 Score=54.93 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=41.7
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...++++|.+...+.|..++..++.. ...++|+.|+||||+|+.+....
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 45678999999999999999877765 45789999999999999988765
No 201
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.016 Score=55.94 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=41.8
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++..+.|..++..++. ..+.++|+.|+||||+|+.+....-
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999987654 4466799999999999999987654
No 202
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.75 E-value=0.011 Score=52.35 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=71.4
Q ss_pred ccccccHHHHHHHHHHHhc----CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCC-CEEEEEEcCCCCCh-HHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALK----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF-DEVVMAELTQNLDP-QKIQDQL 229 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~vs~~~~~-~~~~~~i 229 (294)
...+.|...+..++-.|+. .++...+.|+|+.|.|||+|...+..+.+ .| +...-|.+....-. +-.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHH
Confidence 3456677777766666665 45778889999999999999999888732 24 44555666654333 2346666
Q ss_pred HHHhCCC----CCCCCCHHHHHHHHHHHhcC-----CCeEEEEEeCCCC
Q 022670 230 ASDLGMK----FDLNDSIFHRAHQLCQRLKK-----EKRILIILDNIWT 269 (294)
Q Consensus 230 ~~~~~~~----~~~~~~~~~~~~~l~~~L~~-----~kr~LiVlDdvw~ 269 (294)
..|+... .....+-.+...+|.+.|+. .-+++.|+|+++-
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDl 148 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDL 148 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhc
Confidence 6665332 11223444556777777764 2468888888754
No 203
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.74 E-value=0.017 Score=49.27 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=31.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
...++.|.|..|+|||||+.++...... .. ..+++++ ..-+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEe--CCCCHHHHHHHH
Confidence 3568999999999999998655544322 12 3345555 333556666665
No 204
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.74 E-value=0.083 Score=49.06 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.++|..|+||||++..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999998876543
No 205
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.74 E-value=0.014 Score=52.29 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=58.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC----CEEEEEEcCCCCChHHHHHHHHHHhCCCCCC---------CCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF----DEVVMAELTQNLDPQKIQDQLASDLGMKFDL---------NDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~---------~~~~ 243 (294)
...++-|+|.+|+|||+|+.+++-.......+ ..++|+.....+++.++.. +++.++.+... ..+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 46788899999999999999998654321111 3689999888888877654 44444432110 1121
Q ss_pred H---HHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 244 F---HRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 244 ~---~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
+ .+...+...+.. .+--|||+|-+-..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~ 210 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTAH 210 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchHH
Confidence 2 234445555542 25569999998664
No 206
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.73 E-value=0.0067 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 207
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.73 E-value=0.0092 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|.|++|+||||+++.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987654
No 208
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0046 Score=55.66 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.-+-|..+|++|.|||-||++|+.....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 3566899999999999999999998874
No 209
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.72 E-value=0.0069 Score=60.51 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=34.5
Q ss_pred ccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++.|.+..++.|.+.+. . ...+-+.++|++|+|||+||+++++...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4556676666666655442 1 1244588999999999999999998765
No 210
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0011 Score=54.56 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
+.|-+.|.+|+||||+|+.+....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457788999999999999999988765
No 211
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.71 E-value=0.005 Score=56.96 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=35.1
Q ss_pred cccccHHHHHHHHHHHhcC-------C---------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALKD-------N---------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~-------~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|.+..++.|...+.. . ....+.++|+.|+|||+||+.+.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3478888888777554421 0 235689999999999999999997654
No 212
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.71 E-value=0.014 Score=50.81 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=65.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh--hcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH--
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM--EDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI-- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~-- 243 (294)
+-+-++|.|-.|+|||+|+..+.++.. .+.+-+.++++-+.+.. ...+++.++.+.=..+ .+++.-.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 567789999999999999999887654 11234678888888764 5566666665432111 1111111
Q ss_pred --HHHHHHHHHHhcC--CCeEEEEEeCCCCc-cccccccC
Q 022670 244 --FHRAHQLCQRLKK--EKRILIILDNIWTK-LEFDKIGI 278 (294)
Q Consensus 244 --~~~~~~l~~~L~~--~kr~LiVlDdvw~~-~~w~~l~~ 278 (294)
......+.|++++ ++++|+++||+..- ....++..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl 187 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISA 187 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHh
Confidence 1223446777753 39999999999776 44555543
No 213
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0029 Score=62.24 Aligned_cols=102 Identities=20% Similarity=0.342 Sum_probs=64.5
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcC---CCC-EEEEEEcCCCCChHHHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDN---LFD-EVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~f~-~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
.++++||+++.+.+++.|....-+--.++|.+|+|||+++.-++...-..+ ... ..++ ++ ++-.++
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL----D~g~Lv----- 238 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL----DLGSLV----- 238 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----cHHHHh-----
Confidence 678999999999999999876555567899999999999998888664431 010 1111 00 111110
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 232 DLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+.++. ..-++....+.+-++..++.++++|++.+.
T Consensus 239 -AGakyR--GeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 239 -AGAKYR--GEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred -cccccc--CcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 011221 233445555555555436999999999875
No 214
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.70 E-value=0.0016 Score=44.29 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 215
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.68 E-value=0.0053 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..|.|+|.+|+||||+|+.+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 36889999999999999999997765
No 216
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.015 Score=55.99 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=42.6
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+.+...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44678899999999999999877654 477999999999999999998664
No 217
>PRK09087 hypothetical protein; Validated
Probab=96.67 E-value=0.025 Score=48.01 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.+.|+|..|+|||+|++..+....
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999987543
No 218
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.007 Score=59.30 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=58.2
Q ss_pred ccccccHHHH---HHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChH
Q 022670 156 FAAFDSRMKV---FQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQ 223 (294)
Q Consensus 156 ~~~~~gr~~~---~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 223 (294)
+.++.|.++. +.+++++|.+. -.+=+.++|++|+|||-||++++-...+- |+++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 5566676554 55666667653 24557899999999999999999877753 3444432
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 224 KIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+..+.+... . ......|...-+.+..++|.+|++...
T Consensus 379 ----EFvE~~~g~-----~-asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 379 ----EFVEMFVGV-----G-ASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred ----HHHHHhccc-----c-hHHHHHHHHHhhccCCeEEEecccccc
Confidence 111111111 0 224444554444458899999999654
No 219
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.66 E-value=0.0087 Score=55.55 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=59.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
+...++|+|..|+|||||++.++.... -+.++++-+.+.. ...++..+.+..-+.+ .+.+.-.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 567899999999999999999997554 2455556666543 3445555554432211 1111001
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.+++++ ++++|+++||+..- ....++
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REi 267 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREI 267 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHH
Confidence 1223446666642 49999999999766 444444
No 220
>PRK06762 hypothetical protein; Provisional
Probab=96.65 E-value=0.0019 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999776
No 221
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.64 E-value=0.01 Score=49.98 Aligned_cols=98 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCC--------CC
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMK--------FD 238 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~--------~~ 238 (294)
.++.+.. .+-.-++|.|..|+|||+|+..+.+... =++.+++.+.+. ....++.+++...-..+ .+
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3444442 2457789999999999999999998775 234477888764 45566666664431111 11
Q ss_pred CCCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 239 LNDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 239 ~~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
++.... ...-.+-|++++ +++.|+++||+..-
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 111111 122334455542 39999999999654
No 222
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0042 Score=50.75 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|.|.+|.||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998754
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.64 E-value=0.0087 Score=59.71 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=61.8
Q ss_pred cccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQD 227 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 227 (294)
..++|.++.++.+.+.+... ...++.++|+.|+|||+||+.++.... ...+.+..++-.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc---
Confidence 34567777777777766521 234578999999999999999998663 2234555544211110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc--cccccccCCc
Q 022670 228 QLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK--LEFDKIGIPS 280 (294)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w~~l~~~~ 280 (294)
+..-++... .....+ ....+.+.++.....+|+||++... +.++.|...+
T Consensus 526 -~~~lig~~~-gyvg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 526 -VSRLIGAPP-GYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred -HHHHhcCCC-CCcccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 111122211 101111 1233445555425679999999866 3344444443
No 224
>PTZ00035 Rad51 protein; Provisional
Probab=96.63 E-value=0.017 Score=52.17 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=57.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh---cC-CCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME---DN-LFDEVVMAELTQNLDPQKIQDQLASDLGMKFD---------LNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~-~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 243 (294)
...++.|+|..|+|||+|+.+++-.... .. .=..++|+.....++.+++ ..+.++++.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4678899999999999999988754431 00 1134668887777777774 344555544311 11233
Q ss_pred HHHHHHH---HHHhcCCCeEEEEEeCCCCc
Q 022670 244 FHRAHQL---CQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~~~l---~~~L~~~kr~LiVlDdvw~~ 270 (294)
+++...+ ...+...+--|||+|-+...
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSital 225 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATAL 225 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence 3443333 33333336779999999764
No 225
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.63 E-value=0.0056 Score=47.93 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=29.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999988753 466666777665
No 226
>PRK08149 ATP synthase SpaL; Validated
Probab=96.62 E-value=0.0099 Score=55.04 Aligned_cols=96 Identities=15% Similarity=0.287 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCC--------CCCCC----CH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMK--------FDLND----SI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~--------~~~~~----~~ 243 (294)
+-..++|+|..|+|||||++.++.... -+.++...+.. .-...++..+.+...... .+.+. ..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 567789999999999999999986433 23334444543 345566666666543221 11111 11
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
......+.+++++ +|++||++||+..- ....++
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi 260 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDV 260 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHh
Confidence 1234445666643 49999999999776 334444
No 227
>PRK00625 shikimate kinase; Provisional
Probab=96.62 E-value=0.0019 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998765
No 228
>PRK04328 hypothetical protein; Provisional
Probab=96.62 E-value=0.011 Score=51.08 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=53.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC-------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF------------------- 237 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~------------------- 237 (294)
.-.++.|.|.+|+|||+|+.++....-. . =+..+|++..+ ++.++.+. +++++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~-~-ge~~lyis~ee--~~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ-M-GEPGVYVALEE--HPVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEeeC--CHHHHHHH-HHHcCCCHHHHhhcCCEEEEecccccc
Confidence 4678999999999999999987654321 1 34567777665 33444333 23332210
Q ss_pred -----------CCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 238 -----------DLNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 238 -----------~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
..+.+.+++...+.+.++..+.-+||+|-+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~ 139 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST 139 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence 01134455666666666543455799999853
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.013 Score=53.81 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=47.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcC--CCCEEEEEEcCC-CCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN--LFDEVVMAELTQ-NLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQR 253 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 253 (294)
..++|.++|+.|+||||.+..+........ +=..+..+++-. .....+-++...+.++.+.....+.+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 357899999999999999999987654321 112233343332 1223333555555555443222333333333332
Q ss_pred hcCCCeEEEEEeCCCC
Q 022670 254 LKKEKRILIILDNIWT 269 (294)
Q Consensus 254 L~~~kr~LiVlDdvw~ 269 (294)
+ . +.=+|++|..-.
T Consensus 252 ~-~-~~DlVLIDTaGr 265 (388)
T PRK12723 252 S-K-DFDLVLVDTIGK 265 (388)
T ss_pred h-C-CCCEEEEcCCCC
Confidence 2 2 344666666543
No 230
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.62 E-value=0.0056 Score=56.67 Aligned_cols=96 Identities=16% Similarity=0.287 Sum_probs=59.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCCC------CCCCCH------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMKF------DLNDSI------ 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~~------~~~~~~------ 243 (294)
.-..++|+|..|+|||||++.+..... .+.++.+-+.+.. ...+++.+++..-.... ....+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 457799999999999999999985322 3556666676654 34556666544321110 001111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++|+++||+..- ..+.++
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHH
Confidence 1223345666643 49999999999776 445544
No 231
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.01 Score=48.13 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+..+|.|+|++|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999987753
No 232
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.023 Score=49.65 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=58.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH-hCC---CCC-CCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD-LGM---KFD-LNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-~~~---~~~-~~~~~~~~~~~l~ 251 (294)
.-+++=|+|+.|+||||||.+++-.... .-...+|+..-..+++..+.. +... +.. ..+ ......+++..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 4577789999999999999998865552 244789999999888877643 3333 211 111 1122233444455
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
....+ +--|||+|-+-..
T Consensus 136 ~~~~~-~i~LvVVDSvaa~ 153 (279)
T COG0468 136 RSGAE-KIDLLVVDSVAAL 153 (279)
T ss_pred HhccC-CCCEEEEecCccc
Confidence 55454 5789999988654
No 233
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.011 Score=57.00 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=28.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
..+.+.|+|..|+|||.|++++++.......-..+++++.
T Consensus 313 ~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 313 AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 3466999999999999999999997754211223456643
No 234
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0082 Score=59.74 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=61.5
Q ss_pred ccccHHHHHHHHHHHhcC---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHH
Q 022670 158 AFDSRMKVFQDVVEALKD---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
.++|.++.++.|.+.+.. .....+.++|+.|+|||+||+.+..... .. .+.+.++....... ...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~---~i~id~se~~~~~~-~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFDMSEYMERHT-VSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CC---cEEeechhhccccc-HHH
Confidence 457778888877777652 1245688999999999999999988764 22 23344443211111 111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc--cccccccCCc
Q 022670 229 LASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK--LEFDKIGIPS 280 (294)
Q Consensus 229 i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w~~l~~~~ 280 (294)
+ ++.+. ..... .....+.+.++.....+|+||++... +.++.|...+
T Consensus 533 L---iG~~~-gyvg~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 533 L---IGAPP-GYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred H---cCCCC-Ccccc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 1 12211 10110 11123444444325679999999876 3445444433
No 235
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.58 E-value=0.0023 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+..+|.|+|++|+||||+++.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999765
No 236
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.58 E-value=0.0076 Score=55.05 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHH--HHHHHHHhCCCCCCC-
Q 022670 164 KVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKI--QDQLASDLGMKFDLN- 240 (294)
Q Consensus 164 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~--~~~i~~~~~~~~~~~- 240 (294)
...+.+++.+...+...+.|.|.||+|||+|.+.+.+..+.. -. .+-++.+....+..+ -..+-+-++.+....
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~~-~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--GK-KVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--cc-eEEEecchHHHHHhccCCcchHHhcCccccccc
Confidence 345566666666677888999999999999999999877642 22 222333333233333 123333333332211
Q ss_pred -CC-HHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 241 -DS-IFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 241 -~~-~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.. .......+.+.|+. - =+||+|++.-.
T Consensus 85 ~~~~~~~~~~~~~~~l~~-~-~~lIiDEism~ 114 (364)
T PF05970_consen 85 KSQCKISKNSRLRERLRK-A-DVLIIDEISMV 114 (364)
T ss_pred cccccccccchhhhhhhh-h-eeeecccccch
Confidence 00 01122345556664 3 37788888766
No 237
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.55 E-value=0.012 Score=52.55 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcC---CCccEEEEEecCCCcHHHHHHHHHHHhhhc--CCC---CEEEEEEcCCCCChHHHHHHHHHHh
Q 022670 164 KVFQDVVEALKD---NKHNIIGVYEMGGVGKTTLVKQVAKQVMED--NLF---DEVVMAELTQNLDPQKIQDQLASDL 233 (294)
Q Consensus 164 ~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~f---~~~~wv~vs~~~~~~~~~~~i~~~~ 233 (294)
...+.|.+.+.+ ....+|+|.|.-|+||||+.+.+.+..+.. ..+ ..-+|-.-....-...++..|..++
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 344566676664 467899999999999999999999988765 112 2224443333333455555665554
No 238
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.55 E-value=0.013 Score=49.62 Aligned_cols=100 Identities=13% Similarity=0.232 Sum_probs=63.4
Q ss_pred ccccccHHHHHHHHHH----HhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVE----ALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
...++|.+...+.|++ ++..-...-+.+||..|+||+.|++++.+....+ .-. -|.|.+. ++
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~----dl------ 124 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE----DL------ 124 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH----HH------
Confidence 4556776665555544 4444567789999999999999999999977643 222 3444321 11
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc---cccccccCCcCC
Q 022670 232 DLGMKFDLNDSIFHRAHQLCQRLKK-EKRILIILDNIWTK---LEFDKIGIPSGN 282 (294)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~---~~w~~l~~~~~~ 282 (294)
.+. -.|.+.|+. .+||+|..||+.=+ .....|+.++.+
T Consensus 125 ---------~~L----p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 125 ---------ATL----PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ---------hhH----HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 111 122333332 38999999999866 356667777654
No 239
>PRK05642 DNA replication initiation factor; Validated
Probab=96.55 E-value=0.0063 Score=51.98 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=29.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT 217 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs 217 (294)
.+.+.|+|..|+|||.|++++++....+ -..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence 4678999999999999999998865432 2345677654
No 240
>PRK14974 cell division protein FtsY; Provisional
Probab=96.54 E-value=0.036 Score=49.93 Aligned_cols=57 Identities=26% Similarity=0.356 Sum_probs=35.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC--ChHHHHHHHHHHhCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL--DPQKIQDQLASDLGMK 236 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~~~~~ 236 (294)
+..+|.++|+.|+||||++..++...... .+.. +.+. ...+ ...+-++...+.++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V-~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSV-VIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeE-EEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 46799999999999999888888766542 2433 2232 2222 2333345555555543
No 241
>PRK04040 adenylate kinase; Provisional
Probab=96.54 E-value=0.0025 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998764
No 242
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.53 E-value=0.0063 Score=51.61 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=33.4
Q ss_pred ccccc-cH-HHHHHHHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFD-SR-MKVFQDVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~-gr-~~~~~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++ |. ......+.++... .....+.|+|..|+|||+||+.+++...
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444 33 3445555555442 3457889999999999999999998764
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.53 E-value=0.0029 Score=55.35 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH-hCCCCCCCCCHHH
Q 022670 167 QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD-LGMKFDLNDSIFH 245 (294)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-~~~~~~~~~~~~~ 245 (294)
..+++.+... .+.+.++|+.|+|||++++......... .| ...-++.|..-+...++ +++++ +......
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE------
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC------
Confidence 4466655544 5567999999999999999988654322 12 23345566554444433 33322 1111000
Q ss_pred HHHHHHHHhc--CCCeEEEEEeCCCCc
Q 022670 246 RAHQLCQRLK--KEKRILIILDNIWTK 270 (294)
Q Consensus 246 ~~~~l~~~L~--~~kr~LiVlDdvw~~ 270 (294)
.+. ++|++++.+||+.-+
T Consensus 93 -------~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 -------VYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp -------EEEEESSSEEEEEEETTT-S
T ss_pred -------CCCCCCCcEEEEEecccCCC
Confidence 010 138888888888765
No 244
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.52 E-value=0.008 Score=51.81 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987753
No 245
>PRK05439 pantothenate kinase; Provisional
Probab=96.52 E-value=0.036 Score=49.29 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..-+|+|.|.+|+||||+|+.+.....
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999987554
No 246
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0055 Score=47.89 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
..-|.|.|-+|+|||||+..+....... |+++|.-..-..+...--++. +.. ..+.+.+...|--.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~-------~i~isd~vkEn~l~~gyDE~y--~c~-i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE-------YIEISDLVKENNLYEGYDEEY--KCH-ILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc-------eEehhhHHhhhcchhcccccc--cCc-cccHHHHHHHHHHHHhc
Confidence 4568999999999999999999665532 677775333333222211111 111 14566677777777665
No 247
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.028 Score=51.18 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=49.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC-CCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT-QNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLK 255 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 255 (294)
+.+++.++|+.|+||||++..+......+. ..+.++++- ......+-++...+.++.+.....+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654322 234445442 22233444555555555443222333444333332211
Q ss_pred -CCCeEEEEEeCCCC
Q 022670 256 -KEKRILIILDNIWT 269 (294)
Q Consensus 256 -~~kr~LiVlDdvw~ 269 (294)
+ ..=+|++|-.-.
T Consensus 283 ~~-~~D~VLIDTAGr 296 (407)
T PRK12726 283 VN-CVDHILIDTVGR 296 (407)
T ss_pred cC-CCCEEEEECCCC
Confidence 2 345666666544
No 248
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.48 E-value=0.0076 Score=58.72 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=58.7
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD 232 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 232 (294)
+...+.++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+.... .+|+..+|..- ...+...+++.+..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344677889999888888877654 46889999999999999999986542 34677778655 344777888888765
Q ss_pred hCC
Q 022670 233 LGM 235 (294)
Q Consensus 233 ~~~ 235 (294)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 543
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.48 E-value=0.0065 Score=57.81 Aligned_cols=57 Identities=26% Similarity=0.309 Sum_probs=43.0
Q ss_pred cCccccccHHHHHHHHHHHhcC-----CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA 214 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv 214 (294)
....++.-....++++..||.. ...+++.+.|++|+||||.++.+++... |+.+=|.
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~ 77 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWI 77 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEec
Confidence 3445555566677778887763 2357889999999999999999998765 6666675
No 250
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.47 E-value=0.0031 Score=50.82 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...|.++|++|+||||+|+.+.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999998775
No 251
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.029 Score=53.84 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred ccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+++=|.++.+.+|-+.+. + ...+=|..+|++|+|||++|+++.+..+.
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 3444456555555544332 1 24567899999999999999999997774
No 252
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.47 E-value=0.016 Score=53.88 Aligned_cols=100 Identities=13% Similarity=0.284 Sum_probs=65.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
+-.-++|.|.+|+|||+|+..+...... .+-+.++++-+.+.. ...+++.++...=..+ .+++.-.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 5677899999999999999998877542 234678888887654 4466666665431111 1111101
Q ss_pred HHHHHHHHHHhcC--CCeEEEEEeCCCCc-ccccccc
Q 022670 244 FHRAHQLCQRLKK--EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ~~~~~~l~~~L~~--~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
....-.+.|++++ ++++|+++||+..- ....++.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REis 252 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVS 252 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHH
Confidence 1234556778764 59999999999876 4444443
No 253
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.45 E-value=0.0022 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+|+|.|..|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 254
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.45 E-value=0.016 Score=54.27 Aligned_cols=93 Identities=16% Similarity=0.307 Sum_probs=61.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCC----H
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDS----I 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~----~ 243 (294)
+-..++|.|.+|+|||||+..+....... +-+.++++-+.+.. ...+++.++...-..+ .+.+.- .
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 56779999999999999999988877643 45788888777643 4566666665432111 111111 1
Q ss_pred HHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 244 FHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
....-.+.|++++ ++++|+++|++..-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1234556777742 39999999999654
No 255
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.45 E-value=0.03 Score=52.31 Aligned_cols=100 Identities=15% Similarity=0.293 Sum_probs=63.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
+-.-++|.|..|+|||||+..+......... +.++++-+.+.. .+.+++.++...-..+ .+.+.-.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 5677999999999999999998876653221 467777777643 5566777766432111 1111111
Q ss_pred HHHHHHHHHHhcC--CCeEEEEEeCCCCc-ccccccc
Q 022670 244 FHRAHQLCQRLKK--EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ~~~~~~l~~~L~~--~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
....-.+.+++++ ++++||++|++..- ....++.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 258 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVS 258 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHH
Confidence 1233446777732 49999999999766 4445543
No 256
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0029 Score=52.86 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=24.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.-+|+|.|.+|+||||+|+.+++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4578999999999999999999987773
No 257
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0081 Score=51.70 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=51.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEE---cCC--CCChHHHHHHHHHHhCCCC------CCCCCHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAE---LTQ--NLDPQKIQDQLASDLGMKF------DLNDSIFH 245 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~---vs~--~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 245 (294)
+..+++|||..|+|||||++.+..-.+- -...+++. +.. .....+-..++++.++++. +..-+=-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 5678999999999999999999864432 12222322 111 2233445566676666432 11111111
Q ss_pred HH-HHHHHHhcCCCeEEEEEeCCCCc
Q 022670 246 RA-HQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 246 ~~-~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+ -.+...|.- +.=|||.|+.-+.
T Consensus 115 rQRi~IARALal-~P~liV~DEpvSa 139 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEPVSA 139 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCchhh
Confidence 21 224455665 7778888876554
No 258
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0026 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=25.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
.++|+|-||=|+||||||+.+.++.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 5789999999999999999999988743
No 259
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.038 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+..+++++|..|+||||++..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999887643
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.43 E-value=0.0025 Score=47.41 Aligned_cols=24 Identities=42% Similarity=0.732 Sum_probs=20.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
|-|+|.+|+|||+||+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887763
No 261
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0092 Score=58.82 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=65.1
Q ss_pred ccccccHHHHHHHHHHHhcC------C---CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKD------N---KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 226 (294)
..-++|.++.+..+.+.+.. + ...+...+|+.|+|||.||+++....-.. =+..+-+.+|+ ..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSE------y~ 561 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSE------YM 561 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHH------HH
Confidence 35678999999988888762 1 34566779999999999999999865421 13444454443 22
Q ss_pred HHH-HHH-hCCCCCCCCCHHHHHHHHHHHhcCCCeE-EEEEeCCCCc
Q 022670 227 DQL-ASD-LGMKFDLNDSIFHRAHQLCQRLKKEKRI-LIILDNIWTK 270 (294)
Q Consensus 227 ~~i-~~~-~~~~~~~~~~~~~~~~~l~~~L~~~kr~-LiVlDdvw~~ 270 (294)
.+- .+. ++.+ +..-..++ -..|-+..+. ++| +|.||+|..-
T Consensus 562 EkHsVSrLIGaP-PGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 562 EKHSVSRLIGAP-PGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHHhCCC-CCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 111 112 2322 22122222 4567777887 655 9999999765
No 262
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.42 E-value=0.013 Score=57.02 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=53.5
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL 233 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~ 233 (294)
...+.++|.++.++.+...+.... .+.++|+.|+|||||++.+.+..... .|...+++.-+ ..+..++++.+..++
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhh
Confidence 345778899988888877776543 55699999999999999999876532 34444433222 235556677777666
Q ss_pred CC
Q 022670 234 GM 235 (294)
Q Consensus 234 ~~ 235 (294)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 43
No 263
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.41 E-value=0.016 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999986554
No 264
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.026 Score=55.83 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+++++|+.|+||||++..+.....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 46999999999999999999887653
No 265
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.40 E-value=0.017 Score=57.25 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=59.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
..+++-|+|.+|+|||||+.+++...... =..++|+.....++.. .+++++.+... +.+.+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 46788899999999999997766543321 2456888877776643 56666664321 234555666666
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
..++.++--|||+|-|-..
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 6665547788999998644
No 266
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.39 E-value=0.01 Score=55.04 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCCC------CCCCCH------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMKF------DLNDSI------ 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~~------~~~~~~------ 243 (294)
+-..++|.|..|+|||||.+.++.... -+.++++-+.+.. ...+++.+.+..-+.+. ....+.
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 567899999999999999999997544 3467777777653 44555544333211110 001111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++|+++||+..- ....++
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REi 271 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREI 271 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 1123345666643 49999999999765 334444
No 267
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.39 E-value=0.01 Score=55.22 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=51.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCC-------CCCCCCCH----HH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGM-------KFDLNDSI----FH 245 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~-------~~~~~~~~----~~ 245 (294)
.-..++|+|..|+|||||++.+..... ....+++..=-..-++.++....+..... ..+++... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 456799999999999999998875332 12233333221333555554444433211 11211111 12
Q ss_pred HHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 246 RAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 246 ~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
..-.+.|++++ ++++|+++||+..-
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 23445666643 49999999999776
No 268
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.39 E-value=0.011 Score=46.83 Aligned_cols=75 Identities=17% Similarity=0.040 Sum_probs=41.1
Q ss_pred EEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhC---------CCCCCCCCHHHHHHHHHHH
Q 022670 183 VYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLG---------MKFDLNDSIFHRAHQLCQR 253 (294)
Q Consensus 183 I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~l~~~ 253 (294)
|+|++|+||||+|+.+.+... |.+ + ++.+++++-+..-. .......+.+-+...+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~~~---i------s~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~ 67 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----LVH---I------SVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKER 67 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----SEE---E------EHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC----cce---e------chHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 689999999999999998654 322 2 23344433321100 0011113444556666766
Q ss_pred hcCC-CeEEEEEeCCCCc
Q 022670 254 LKKE-KRILIILDNIWTK 270 (294)
Q Consensus 254 L~~~-kr~LiVlDdvw~~ 270 (294)
+... ...-+|||+.=..
T Consensus 68 l~~~~~~~g~ildGfPrt 85 (151)
T PF00406_consen 68 LEQPPCNRGFILDGFPRT 85 (151)
T ss_dssp HHSGGTTTEEEEESB-SS
T ss_pred Hhhhcccceeeeeecccc
Confidence 6641 2445678887554
No 269
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.39 E-value=0.021 Score=57.87 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=64.8
Q ss_pred ccccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 226 (294)
...++|.+..++.+...+... ...++.++|+.|+|||+||+.+++..-.. -...+.+.++.... ....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hhhH
Confidence 345678888888877776521 12478899999999999999999755311 22334455543211 1111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc--cccccccCCcC
Q 022670 227 DQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK--LEFDKIGIPSG 281 (294)
Q Consensus 227 ~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w~~l~~~~~ 281 (294)
..+ ++.+ +.....++ ...+.+.++....-+|+|||+... ..++.|...+.
T Consensus 644 ~~L---iG~~-pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 644 SRL---VGAP-PGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred HHH---hCCC-Ccccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 111 2221 11111111 123444444324579999999844 45555554443
No 270
>PRK05922 type III secretion system ATPase; Validated
Probab=96.38 E-value=0.012 Score=54.59 Aligned_cols=98 Identities=19% Similarity=0.294 Sum_probs=57.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCCC------CCCCC--H---
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMKF------DLNDS--I--- 243 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~~------~~~~~--~--- 243 (294)
.+-..++|+|..|+|||||.+.+..... -+..+.+.+.+. ....+.+.+.......+. ....+ .
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 3566789999999999999999986433 233344444432 233455544443332211 00011 1
Q ss_pred -HHHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 244 -FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 -~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
....-.+.|++++ ++++|+++||+..- ....++.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 1233446677743 49999999999776 3444443
No 271
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.37 E-value=0.0052 Score=50.31 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=30.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELT 217 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs 217 (294)
.+++.|+|+.|+|||||++.+.+... ..|...++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeeccc
Confidence 57899999999999999999998766 457655555444
No 272
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.37 E-value=0.011 Score=51.31 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=60.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC-------------------C
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK-------------------F 237 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~-------------------~ 237 (294)
..+++.|+|.+|+|||+++.++...... ..+.++||+..+. ...+++...+ ++-+ .
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~--~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~ 96 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR--EGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLSEK 96 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh--cCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccccc
Confidence 5789999999999999999999987773 3888999988874 3444444321 1110 0
Q ss_pred C-----C--CCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 238 D-----L--NDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 238 ~-----~--~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
. . ..+...+...|.+..+..+..-+|+|.+-.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 97 GLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred ccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 0 0 124455677777777654577889999874
No 273
>PRK04182 cytidylate kinase; Provisional
Probab=96.37 E-value=0.0092 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|.|.|+.|+||||+++.+.+...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998765
No 274
>PRK14532 adenylate kinase; Provisional
Probab=96.37 E-value=0.018 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|.|++|+||||+|+.+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999986543
No 275
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.36 E-value=0.0033 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++.|+|+.|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 276
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.36 E-value=0.015 Score=53.49 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=47.1
Q ss_pred cccccHHHHHHHHHHHhcCC--------------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC---CEEEEEEcC-C
Q 022670 157 AAFDSRMKVFQDVVEALKDN--------------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF---DEVVMAELT-Q 218 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f---~~~~wv~vs-~ 218 (294)
..++|.++.++.+.-.+... ..+.|.++|++|+|||+||+.+...... .| +...++... .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEeecceeecCCcc
Confidence 34678877777766554421 2367899999999999999999988763 23 222233222 2
Q ss_pred CCChHHHHHHHHHH
Q 022670 219 NLDPQKIQDQLASD 232 (294)
Q Consensus 219 ~~~~~~~~~~i~~~ 232 (294)
..+...+++.+.+.
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 23566666666544
No 277
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.36 E-value=0.0062 Score=51.59 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH-HhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC---------------CCC-
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK-QVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK---------------FDL- 239 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~-~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~---------------~~~- 239 (294)
...++.|.|.+|+|||+|+.++.. ..+.. =+.++|++..++ ..++.+.+- +++.+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 468899999999999999998664 33320 124567776553 455555532 32211 000
Q ss_pred ----CCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 240 ----NDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 240 ----~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
..+.+++...+.+.++..+...+|+|.+...
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 2456777788877776435579999987443
No 278
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.33 E-value=0.0079 Score=50.14 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 022670 162 RMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA 214 (294)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv 214 (294)
+.......++.|. +..++.+.|++|+|||.||-+..-+.-....|+..+++
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4445556666666 56789999999999999999888766555778888776
No 279
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.33 E-value=0.041 Score=51.91 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=60.7
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhh-----cCCCCEEEEEEcCCCCChHHHHHHHHHHhC-CC--------CCCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVME-----DNLFDEVVMAELTQNLDPQKIQDQLASDLG-MK--------FDLND 241 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~-~~--------~~~~~ 241 (294)
+-.-++|.|-.|+|||+|| ..+.+.... ..+-..++++-+.+..+--.-+.+.+++-+ .+ .+++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4567899999999999996 666665422 123456788888886544333444444433 11 11111
Q ss_pred CHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 242 SIF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 242 ~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
... .....+-|++++ ++..|||+||+..- ..+.++
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REI 308 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHH
Confidence 111 123445666643 49999999999877 455555
No 280
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.32 E-value=0.0073 Score=57.48 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=59.4
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE-EcCCCC-ChHHHHHHHHHHh-CCCCCCCCC--
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA-ELTQNL-DPQKIQDQLASDL-GMKFDLNDS-- 242 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv-~vs~~~-~~~~~~~~i~~~~-~~~~~~~~~-- 242 (294)
+++++.. ..-.-..|+|.+|+|||||++.|.+.... .+=+++++| -|.+.+ .+.++.+.+--.+ ....+.+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 4444443 35567899999999999999999986643 223444433 444433 3333333321111 111222111
Q ss_pred --HHHHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 243 --IFHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 243 --~~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
..++.-.+-++|.+ ++.+||+||++... ..+..+.
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~ 523 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAA 523 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhh
Confidence 12333445566632 49999999999766 3444443
No 281
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.32 E-value=0.015 Score=53.08 Aligned_cols=85 Identities=25% Similarity=0.309 Sum_probs=50.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
.-.++.|.|.+|+|||||+.++....... -..++|++..+ +..++. .-.+.++...+. ..+.+.+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~-- 153 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILAS-- 153 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHH--
Confidence 45789999999999999999998766532 24566776543 333332 223445443211 1233333333
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
+...+.-+||+|.+...
T Consensus 154 --i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 154 --IEELKPDLVIIDSIQTV 170 (372)
T ss_pred --HHhcCCcEEEEcchHHh
Confidence 33226778999998543
No 282
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.32 E-value=0.0063 Score=54.93 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=43.6
Q ss_pred ccCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.-++..++|.++.+..|...+.+....-+.|.|..|+||||+|+.+++-..
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345678899999999998888887787788999999999999999987553
No 283
>PRK06217 hypothetical protein; Validated
Probab=96.32 E-value=0.0035 Score=51.38 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=26.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCC--CEEEEE
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLF--DEVVMA 214 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv 214 (294)
+.|.|.|.+|+||||||+.+....... +| +..+|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 358999999999999999999877542 23 445564
No 284
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.31 E-value=0.0078 Score=52.61 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=54.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEE-EEcCCC
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVM-AELTQN 219 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~w-v~vs~~ 219 (294)
...+++.|.+..+.-|.+.+..........+|++|.|||+-|.+.....-..+.|.+++. .++|..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 446788999999999999988877888999999999999999999987776677877654 355543
No 285
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.38 Score=44.32 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=40.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK 236 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~ 236 (294)
...+|-.+|.-|.||||.+..+....+. ..+.+-+-.+-..-|.+.+-++.+.+|++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 3578999999999999999999987775 3344332223333455566677777777654
No 286
>PRK01184 hypothetical protein; Provisional
Probab=96.29 E-value=0.012 Score=48.01 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=17.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+|+|+|++|+||||+++ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 478999999999999987 443
No 287
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.29 E-value=0.012 Score=54.88 Aligned_cols=96 Identities=15% Similarity=0.305 Sum_probs=56.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCCC-------CCCCCH-----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMKF-------DLNDSI----- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~~-------~~~~~~----- 243 (294)
+-..++|+|..|+|||||++.+..... .+.++...+... ....++...+...-.... .+....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 456799999999999999998875322 234444445443 345555555544322210 110111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
......+-|++++ ++++|+++||+..- ....++
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REi 277 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREI 277 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHH
Confidence 1223446666643 49999999999776 344444
No 288
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.28 E-value=0.031 Score=48.84 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=23.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.+++.++|++|+||||++.+++.....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4678999999999999999998876643
No 289
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.28 E-value=0.0033 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 290
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.28 E-value=0.0035 Score=48.96 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|.|.|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 291
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.28 E-value=0.0053 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..|.|.|++|+||||+|+.+.+...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999997654
No 292
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.27 E-value=0.037 Score=45.40 Aligned_cols=91 Identities=21% Similarity=0.179 Sum_probs=48.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCC-C-------EEEEEEcCCCCChHHHHHHHHHHhCCC-------------
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF-D-------EVVMAELTQNLDPQKIQDQLASDLGMK------------- 236 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f-~-------~~~wv~vs~~~~~~~~~~~i~~~~~~~------------- 236 (294)
..++.|+|.+|+||||++.++....-....| . .++|+..... ...+.+.+.......
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence 4578899999999999999999877643333 2 4566665554 333333332211100
Q ss_pred ---------CCCCCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 237 ---------FDLNDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 237 ---------~~~~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
...........+.+.+.+.. .+.-+||+|.+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 00001123345566666654 35679999988554
No 293
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.27 E-value=0.0077 Score=48.02 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=29.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
+++|+|+.|+|||||+..+....+.+ .+...+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKHDHH 38 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccc
Confidence 58899999999999999999987643 466655555443
No 294
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.27 E-value=0.032 Score=48.51 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=59.3
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCHH-
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFDE-VVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSIF- 244 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~~- 244 (294)
+-+-++|.|..|+|||+|| ..+.+... -+. ++++-+.+.. ...+++.++.+.-..+ .+++....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4677899999999999995 66665322 233 3667777653 4566666665432111 11111111
Q ss_pred ---HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccccCC
Q 022670 245 ---HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIGIP 279 (294)
Q Consensus 245 ---~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~~~ 279 (294)
...-.+.|+++. +++.||++||+..- ..|+++..+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 123345555543 49999999999877 556665433
No 295
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.011 Score=56.72 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=37.8
Q ss_pred CccccccHHH---HHHHHHHHhcCCC---------ccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 155 DFAAFDSRMK---VFQDVVEALKDNK---------HNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 155 ~~~~~~gr~~---~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
.+.++-|.++ ++.+++++|.+.. .+=+.++|++|.|||.||+++.-...+-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3556667655 5566777777532 3447899999999999999999877753
No 296
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.26 E-value=0.0059 Score=48.57 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
..+|-+.|.+|+||||||+.+.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3578899999999999999999998864
No 297
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.25 E-value=0.016 Score=58.69 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=37.8
Q ss_pred ccccccHHHHHHHHHHHhcC------C---CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD------N---KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~------~---~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++|.+..++.+.+.+.. + ...++.++|+.|+|||.||+.+....-
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999888887742 1 234688999999999999999987664
No 298
>PRK02496 adk adenylate kinase; Provisional
Probab=96.25 E-value=0.038 Score=45.13 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.|.|++|+||||+++.+.....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 299
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.25 E-value=0.0054 Score=49.72 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4568999999999999999999987764
No 300
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.24 E-value=0.027 Score=48.94 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=28.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
.-+++.|.|.+|+|||+|+.++....-.+ =+.+++++.-.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 46788999999999999999976543221 23556776653
No 301
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.23 E-value=0.0041 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|+|.|..|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 302
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0075 Score=57.39 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=45.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
..+.+-++|++|+|||.||+++++..+. +|-.+ ... +++.+ ...++...+........+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v-----~~~----~l~sk---------~vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RFISV-----KGS----ELLSK---------WVGESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEe-----eCH----HHhcc---------ccchHHHHHHHHHHHHHcC
Confidence 3557889999999999999999986553 23322 211 21111 1112333333334444455
Q ss_pred CCeEEEEEeCCCCccc
Q 022670 257 EKRILIILDNIWTKLE 272 (294)
Q Consensus 257 ~kr~LiVlDdvw~~~~ 272 (294)
..+.|.+|++.....
T Consensus 335 -~p~iiFiDEiDs~~~ 349 (494)
T COG0464 335 -APSIIFIDEIDSLAS 349 (494)
T ss_pred -CCcEEEEEchhhhhc
Confidence 899999999977543
No 303
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.22 E-value=0.023 Score=57.76 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=65.6
Q ss_pred cccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQD 227 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 227 (294)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....... -...+.+.++....... ..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~-~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS-VA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch-HH
Confidence 45788888888888877631 13567899999999999999999865421 22334455553222111 11
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc--cccccccCCcC
Q 022670 228 QLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK--LEFDKIGIPSG 281 (294)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w~~l~~~~~ 281 (294)
.+ ++.+. .....++ ...+.+.++.....+|+||++... ..++.|...|.
T Consensus 642 ~l---~g~~~-g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 642 RL---IGAPP-GYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred Hh---cCCCC-CccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 11 12111 1011110 123444444325569999999766 44555544443
No 304
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.22 E-value=0.019 Score=53.36 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=55.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCCh-HHHHHHHHHH-hCC------CCCCCCCHH---
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDP-QKIQDQLASD-LGM------KFDLNDSIF--- 244 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~i~~~-~~~------~~~~~~~~~--- 244 (294)
.+-..++|+|..|+|||||++.+..... -+..+...+.+...- .+.....+.. +.. ..+++.-..
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~ 230 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG 230 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH
Confidence 4567899999999999999999986433 234444555544333 3333322211 100 011111111
Q ss_pred -HHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 245 -HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 245 -~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
.....+.+++++ ++++|+++||+..- ....++.
T Consensus 231 ~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~ 266 (434)
T PRK08472 231 AFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIG 266 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHH
Confidence 123445666643 49999999999876 4455553
No 305
>PF14516 AAA_35: AAA-like domain
Probab=96.22 E-value=0.088 Score=47.43 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=68.5
Q ss_pred cccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-----CCChHHHHHHHHHHh
Q 022670 159 FDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-----NLDPQKIQDQLASDL 233 (294)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~~ 233 (294)
.+.|...-+.+.+.+.+ ....+.|.|+..+|||+|...+.+..+.. .|.+ +++.+.. ..+...+++.++..+
T Consensus 13 Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~-v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRC-VYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred ccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-CCEE-EEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 35677666677776653 35689999999999999999999888753 3544 4665553 134565665555444
Q ss_pred ----CCCCCC-------CCCHHHHHHHHHHHh-cC-CCeEEEEEeCCCCcc
Q 022670 234 ----GMKFDL-------NDSIFHRAHQLCQRL-KK-EKRILIILDNIWTKL 271 (294)
Q Consensus 234 ----~~~~~~-------~~~~~~~~~~l~~~L-~~-~kr~LiVlDdvw~~~ 271 (294)
+.+..- ..+.......+.+++ .. +++.+|+||+|....
T Consensus 90 ~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~ 140 (331)
T PF14516_consen 90 SRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLF 140 (331)
T ss_pred HHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhc
Confidence 433110 012222333344432 21 389999999998763
No 306
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.22 E-value=0.058 Score=45.67 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=51.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD------------------ 238 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~------------------ 238 (294)
.-.++.|.|.+|+|||||+.++....-.. -+..+|++... +...+... ..+++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 46789999999999999999876533211 34567777643 33444333 222211100
Q ss_pred ------CCCCHHHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 239 ------LNDSIFHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 239 ------~~~~~~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
...+.+++...+.+.++. .+.-++|+|.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l 133 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAF 133 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhh
Confidence 013455666666665543 13457888887543
No 307
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.22 E-value=0.048 Score=47.43 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=34.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
...++.|.|.+|+||||++.++....-... =..++|+++.. ...++...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~ 79 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLL 79 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHH
Confidence 356788999999999999999887653221 23566776654 3444544443
No 308
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.21 E-value=0.0045 Score=50.29 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++|.+.|++|+||||+|+.+.+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999987654
No 309
>PRK13947 shikimate kinase; Provisional
Probab=96.21 E-value=0.0042 Score=50.07 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|.|+|++|+||||+++.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988763
No 310
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.20 E-value=0.023 Score=49.46 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHH
Q 022670 163 MKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 163 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 226 (294)
...++.+..++.. -..+.+.|.+|+|||+||+.+..... . ..+.++.+...+..+++
T Consensus 8 ~~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~lg----~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKRD----R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHhC----C-CEEEEeCCccCCHHHHh
Confidence 3445556666553 34567999999999999999997442 2 23456666665655554
No 311
>PRK14528 adenylate kinase; Provisional
Probab=96.20 E-value=0.033 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999987654
No 312
>PRK13949 shikimate kinase; Provisional
Probab=96.19 E-value=0.0046 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|+|+.|+||||+++.+.....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998775
No 313
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.18 E-value=0.0039 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
++|+|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999974
No 314
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.17 E-value=0.044 Score=49.32 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHh----CCCC-----
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDL----GMKF----- 237 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~----~~~~----- 237 (294)
+++.+.. .+-..++|.|..|+|||+|++++.+..+ -+.++++-+.+. ..+.+++.++-+.. +...
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtv 222 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTV 222 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEE
Confidence 4444432 3567899999999999999999987543 357788888764 45566666653211 1100
Q ss_pred ----CCCCC--H----HHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 238 ----DLNDS--I----FHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 238 ----~~~~~--~----~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
..+++ . ....-.+.|++++ ++++|+++|++..-
T Consensus 223 lV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~ 266 (369)
T cd01134 223 LIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRW 266 (369)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHH
Confidence 00111 1 1123345666643 49999999998543
No 315
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.16 E-value=0.0049 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=21.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998765
No 316
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.16 E-value=0.0074 Score=57.88 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=40.6
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...++++|.+...+.+...+.......+.|+|..|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999888888887766666778999999999999999998754
No 317
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.0083 Score=50.51 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=24.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCE
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE 210 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~ 210 (294)
.|+|+|-||+||||+|..+....-.++.|+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 6899999999999999997766655443443
No 318
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.14 E-value=0.026 Score=52.19 Aligned_cols=48 Identities=17% Similarity=0.042 Sum_probs=35.8
Q ss_pred ccccccHHHHHHHHHHHhc-------C---C--------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALK-------D---N--------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------~---~--------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++|.++.++.+...+. . . ....+.++|+.|+|||+||+.+.....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 3456888888887765541 1 1 125689999999999999999997654
No 319
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.14 E-value=0.0044 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46889999999999999998764
No 320
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.14 E-value=0.041 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+++++|+.|+||||++..++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999997664
No 321
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.13 E-value=0.0058 Score=52.56 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=40.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEE-------cC--CCCChHHH--HHHHHHHhCCCCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAE-------LT--QNLDPQKI--QDQLASDLGMKFDL 239 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~-------vs--~~~~~~~~--~~~i~~~~~~~~~~ 239 (294)
+..+|.++||+|+||||..+.++.+...+ +.+-.-++ ++ -..++++. .++.++|-++..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~--~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK--KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc--cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 45678899999999999999999988754 32211122 22 23455555 46788887665443
No 322
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.12 E-value=0.02 Score=47.01 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|.|+.|+||||+++.+.+....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999988753
No 323
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.12 E-value=0.011 Score=53.15 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=39.4
Q ss_pred CccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
|+..++|.++.+..|+-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 346788999998888777666666778899999999999999998644
No 324
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.12 E-value=0.023 Score=52.76 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=57.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCC--------CCCCCCCH---
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGM--------KFDLNDSI--- 243 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~--------~~~~~~~~--- 243 (294)
.+-..++|+|..|+|||||++.+..... .+..++..+.+. ....+++......=.. ..+. ...
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~-p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDR-PALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCC-CHHHHH
Confidence 3567899999999999999999886433 445566666653 3444555554321000 0111 111
Q ss_pred --HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 --FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 --~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++|+++||+..- ....++
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REi 264 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI 264 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHH
Confidence 1223446666643 49999999999765 333443
No 325
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.11 E-value=0.015 Score=46.72 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999987654
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.11 E-value=0.018 Score=50.59 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 167 QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+...+++...+..++.|+|..|+|||||+..+......
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34555666678999999999999999999999987653
No 327
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.10 E-value=0.011 Score=53.23 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=47.9
Q ss_pred ccccccHHHHH---HHHHHHhcCCC--ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC----CCChHHHH
Q 022670 156 FAAFDSRMKVF---QDVVEALKDNK--HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ----NLDPQKIQ 226 (294)
Q Consensus 156 ~~~~~gr~~~~---~~l~~~l~~~~--~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~----~~~~~~~~ 226 (294)
...++|..+.. .-+++++...+ -+.|.+.|++|+|||+||..+.+....+..|-. ++-|+ ...-++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~---isgSEiyS~e~kKTE~L 99 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS---ISGSEIYSSEVKKTEAL 99 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE---EEGGGG-BTTC-HHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE---cccceeeecccCchHHH
Confidence 46788877655 46788887765 688999999999999999999999886544422 23332 23445555
Q ss_pred HHHHHH
Q 022670 227 DQLASD 232 (294)
Q Consensus 227 ~~i~~~ 232 (294)
.+.+++
T Consensus 100 ~qa~Rr 105 (398)
T PF06068_consen 100 TQAFRR 105 (398)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555544
No 328
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.10 E-value=0.0054 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...+|+|+|+.|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999754
No 329
>PRK05973 replicative DNA helicase; Provisional
Probab=96.10 E-value=0.056 Score=46.19 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=32.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
...++.|.|.+|+|||+|+.++....-. . =+.+++++... +..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~-Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK-S-GRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-c-CCeEEEEEEeC--CHHHHHHHH
Confidence 4678899999999999999988765432 2 23455555443 355555554
No 330
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.09 E-value=0.027 Score=52.75 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=64.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCC--EEEEEEcCCC-CChHHHHHHHHHHhCCC--------CCCCCC---
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFD--EVVMAELTQN-LDPQKIQDQLASDLGMK--------FDLNDS--- 242 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~--~~~wv~vs~~-~~~~~~~~~i~~~~~~~--------~~~~~~--- 242 (294)
+-.-++|.|-.|+|||||+..+.+.......+. .++++-+.+. -...+++.++...=..+ .+.+.-
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 456789999999999999999998665321121 5567777654 35566666665332111 111111
Q ss_pred -HHHHHHHHHHHhc-C-CCeEEEEEeCCCCc-cccccccC
Q 022670 243 -IFHRAHQLCQRLK-K-EKRILIILDNIWTK-LEFDKIGI 278 (294)
Q Consensus 243 -~~~~~~~l~~~L~-~-~kr~LiVlDdvw~~-~~w~~l~~ 278 (294)
.......+.|+++ + ++++|+++||+..- ....++..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl 259 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISA 259 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHH
Confidence 1123455778887 2 59999999999776 44555543
No 331
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.09 E-value=0.012 Score=45.51 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.+.|.-|+|||||++.+......
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999987754
No 332
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.08 E-value=0.014 Score=52.09 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=44.8
Q ss_pred ccccccHHHHHH---HHHHHhcCC--CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE
Q 022670 156 FAAFDSRMKVFQ---DVVEALKDN--KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE 210 (294)
Q Consensus 156 ~~~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~ 210 (294)
.+.++|..+..+ -+++++..+ .-+.|.++|++|+|||+||-.+.+......+|-.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 467888776654 577877766 3688999999999999999999999987777754
No 333
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.08 E-value=0.0064 Score=46.54 Aligned_cols=41 Identities=34% Similarity=0.450 Sum_probs=23.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHH
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 226 (294)
+.|+|.+|+||||+|+.+..... ..|.. |.......+.+++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~R---Iq~tpdllPsDi~ 42 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKR---IQFTPDLLPSDIL 42 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE---EE--TT--HHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeE---EEecCCCCcccce
Confidence 57899999999999999998877 34643 3334444444443
No 334
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.07 E-value=0.013 Score=54.96 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=39.6
Q ss_pred cccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCC
Q 022670 157 AAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFD 209 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~ 209 (294)
..++|+++.++.+.-.+.. -..+.|.|++|+|||+||+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4678899988888887764 34578999999999999999998665333454
No 335
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.05 E-value=0.0074 Score=50.49 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=27.9
Q ss_pred HHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 171 EALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 171 ~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.+.+.+.++|+++|..|+|||||...+.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444556899999999999999999999987654
No 336
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.04 E-value=0.013 Score=54.16 Aligned_cols=96 Identities=19% Similarity=0.341 Sum_probs=56.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
+-..++|+|..|+|||||++.+..... -+..+...+.+.. ...++..++...=..+ .+.+.-.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 456799999999999999998886443 2344445555533 3455555544331111 1111111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++||++||+..- ....++
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REi 246 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREI 246 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHH
Confidence 1223445666642 49999999999776 344443
No 337
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.03 E-value=0.016 Score=53.55 Aligned_cols=97 Identities=21% Similarity=0.346 Sum_probs=56.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCH---
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSI--- 243 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~--- 243 (294)
.+-..++|+|..|+|||||++.+....+. +..+..-+.+.. ...++..+.+.+-+.. .+.+.-.
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 35678999999999999999988864432 223333444432 4455555544331111 1111111
Q ss_pred -HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 -FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 -~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
......+.|++++ +++.|+++||+..- ....++
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEi 246 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREI 246 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHH
Confidence 1233446666643 49999999999876 445544
No 338
>PRK14530 adenylate kinase; Provisional
Probab=96.01 E-value=0.0065 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|.|+|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987664
No 339
>PRK13975 thymidylate kinase; Provisional
Probab=96.01 E-value=0.0065 Score=50.14 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.|.|.|+.|+||||+++.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999987763
No 340
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.99 E-value=0.0081 Score=48.05 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=25.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDN 206 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~ 206 (294)
.++++|+|..++|||||...+....+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999998887643
No 341
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.98 E-value=0.037 Score=49.54 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=54.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
.-..++|+|..|+|||||.+.+..... -++.+..-+.. .-...++....+..-... .+++.-.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 456789999999999999998886443 23344444443 345566665555442221 1111111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
....-.+.+++.+ +|.+||++||+..-
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1223345566642 49999999998765
No 342
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.98 E-value=0.021 Score=52.98 Aligned_cols=100 Identities=17% Similarity=0.290 Sum_probs=56.3
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCC--------CCCC----CC
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMK--------FDLN----DS 242 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~--------~~~~----~~ 242 (294)
.+-..++|+|..|+|||||++.+..... .+..+...+.. .-...++..+.+.+-+.. .+.+ ..
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 3567899999999999999998876433 23333333332 223333333433332111 0110 11
Q ss_pred HHHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccccCC
Q 022670 243 IFHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIGIP 279 (294)
Q Consensus 243 ~~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~~~ 279 (294)
..+....+.+++.+ ++++|+++||+..- ....++..+
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~ 267 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALS 267 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHh
Confidence 22334455566543 49999999999876 455555433
No 343
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.98 E-value=0.012 Score=53.33 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQ-KIQDQLASDLGMKFDLNDSIFHRAHQLCQRL 254 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L 254 (294)
.....|.|.|+.|+||||+++.+..... .+...++++ +.++.... .-...++.+... ..........++..|
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~t-iEdp~E~~~~~~~~~i~q~ev----g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIIT-IEDPIEYVHRNKRSLINQREV----GLDTLSFANALRAAL 192 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEE-EcCChhhhccCccceEEcccc----CCCCcCHHHHHHHhh
Confidence 3457899999999999999999887554 234444443 22211100 000001111011 111223566678888
Q ss_pred cCCCeEEEEEeCCCCcccccc
Q 022670 255 KKEKRILIILDNIWTKLEFDK 275 (294)
Q Consensus 255 ~~~kr~LiVlDdvw~~~~w~~ 275 (294)
+. ..=.|++|++.+.+.+..
T Consensus 193 r~-~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 193 RE-DPDVILIGEMRDLETVEL 212 (343)
T ss_pred cc-CCCEEEEeCCCCHHHHHH
Confidence 87 888999999998876654
No 344
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.97 E-value=0.016 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+-+.++|++|+|||++|+.+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999988665
No 345
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.97 E-value=0.0072 Score=49.06 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.|.|+|+.|+|||||++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45699999999999999999998754
No 346
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.97 E-value=0.093 Score=49.01 Aligned_cols=100 Identities=16% Similarity=0.305 Sum_probs=63.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCCC------CCCCCH------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMKF------DLNDSI------ 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~~------~~~~~~------ 243 (294)
+-..++|.|..|+|||||+..+........ =..++++-+.+. -...+++.++...=..+. ....+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 567789999999999999999887665321 246777777764 345666666654311110 111111
Q ss_pred HHHHHHHHHHhcC--CCeEEEEEeCCCCc-ccccccc
Q 022670 244 FHRAHQLCQRLKK--EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ~~~~~~l~~~L~~--~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
....-.+.|++++ ++++|+++||+..- ....++.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 257 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVS 257 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHH
Confidence 1233456777743 49999999999876 4455554
No 347
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.97 E-value=0.0061 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++.|+|+.|+|||||++.+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999976543
No 348
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0061 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|..|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 567899999999999999999875
No 349
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.0061 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-..++|+|++|||||||.+.|.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999985
No 350
>PRK14527 adenylate kinase; Provisional
Probab=95.94 E-value=0.0079 Score=49.59 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+..+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987665
No 351
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.94 E-value=0.0052 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|+|+.|+||||+|+.+.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998754
No 352
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.94 E-value=0.057 Score=51.30 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=57.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC---------------CCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF---------------DLND 241 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---------------~~~~ 241 (294)
.-.++.|.|.+|+|||||+.++....-.+ =+.+++++.-+ +..++.+.+ +.++.+. +...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 56889999999999999999998765422 24455554433 556666554 4444321 1113
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 242 SIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 242 ~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
+.++.+..+.+.+...+.-+||+|-+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 3466777777777643556899999874
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.94 E-value=0.17 Score=45.32 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+..+++++|+.|+||||++..+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999886653
No 354
>PRK13695 putative NTPase; Provisional
Probab=95.94 E-value=0.014 Score=47.27 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA 214 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv 214 (294)
.|.|.|.+|+|||||++.++..... ..|...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 5789999999999999999887654 234444344
No 355
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.93 E-value=0.034 Score=44.95 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=45.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC-Ce
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE-KR 259 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~-kr 259 (294)
+.|.|..|+|||++|.++... .....+++...+.++. ++...|-.-....... ....+....|.+.+... +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAH-WRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhcCCC
Confidence 678999999999999999764 1345667766666655 3444433221112111 12122233444444321 23
Q ss_pred EEEEEeCCCC
Q 022670 260 ILIILDNIWT 269 (294)
Q Consensus 260 ~LiVlDdvw~ 269 (294)
-.|++|.+..
T Consensus 75 ~~VLIDclt~ 84 (169)
T cd00544 75 DVVLIDCLTL 84 (169)
T ss_pred CEEEEEcHhH
Confidence 3799998743
No 356
>PRK06620 hypothetical protein; Validated
Probab=95.91 E-value=0.0067 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.019 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.+.|+|++|+|||+|++.+++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 6699999999999999999877543
No 357
>PRK13946 shikimate kinase; Provisional
Probab=95.91 E-value=0.0072 Score=49.56 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998875
No 358
>PRK14529 adenylate kinase; Provisional
Probab=95.90 E-value=0.046 Score=46.25 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|.|.|++|+||||+++.+......
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3788999999999999999987753
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.90 E-value=0.014 Score=46.70 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 165 VFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.++.|.+++.+ +++.++|..|+|||||.+.+...
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 45667777763 78999999999999999999875
No 360
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.90 E-value=0.027 Score=51.86 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=47.5
Q ss_pred cccccHHHHHHHHHHHhcC---------C-----CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC---CEEEEEEcC-C
Q 022670 157 AAFDSRMKVFQDVVEALKD---------N-----KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF---DEVVMAELT-Q 218 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~---------~-----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f---~~~~wv~vs-~ 218 (294)
..++|.++.++.+..++.. . ..+.|.++|+.|+|||+||+.+...... .| +...|.... .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~--~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--hheeecchhhccCCcc
Confidence 4578888888877776642 0 1367899999999999999999987753 23 222233222 1
Q ss_pred CCChHHHHHHHHHH
Q 022670 219 NLDPQKIQDQLASD 232 (294)
Q Consensus 219 ~~~~~~~~~~i~~~ 232 (294)
..+...+++.++..
T Consensus 93 G~d~e~~ir~L~~~ 106 (443)
T PRK05201 93 GRDVESIIRDLVEI 106 (443)
T ss_pred cCCHHHHHHHHHHH
Confidence 23555555555443
No 361
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.89 E-value=0.0079 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997543
No 362
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.89 E-value=0.0064 Score=47.40 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999754
No 363
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.89 E-value=0.044 Score=44.30 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 160 DSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 160 ~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
+|....+.++++.+.. .....|.|+|..|+||+.+|+.+++... ..-...+-|+++.- +.+.+-..++
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~~-~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAAL-PEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTTS--HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhhh-hcchhhhhhh
Confidence 4555555555555442 2235677999999999999999998433 12234455566533 3333333333
No 364
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.89 E-value=0.024 Score=57.39 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=64.5
Q ss_pred cccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQD 227 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 227 (294)
..++|.++.++.+.+.+... ....+.++|+.|+|||+||+.+.+..-.. -...+-+..+.......+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH-H
Confidence 56788888888888776521 13456789999999999999999765321 122334444432221111 1
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc--cccccccCCcC
Q 022670 228 QLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK--LEFDKIGIPSG 281 (294)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~--~~w~~l~~~~~ 281 (294)
.+ ++.+. .....+ ....|.+.++.....+|+|||+... +.++.|...|.
T Consensus 586 ~l---~g~~~-gyvg~~-~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 586 KL---IGSPP-GYVGYN-EGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred Hh---cCCCC-cccCcC-ccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 11 12111 101111 1223455665524568999999866 44555554443
No 365
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.87 E-value=0.024 Score=52.64 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=55.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
.-..++|+|..|+|||||++.++...+. ...++ .-+.+ .....+++...+..-+.. .+.+...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI-~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVI-SLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEE-EeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 5678899999999999999999875442 12222 23443 356667776665442221 1111111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
......+.+++++ +++.||++||+-.-
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1233445666643 49999999999876
No 366
>COG4240 Predicted kinase [General function prediction only]
Probab=95.86 E-value=0.067 Score=44.99 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=51.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCC-----CCCCCCCHHHHHHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGM-----KFDLNDSIFHRAHQL 250 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~l 250 (294)
++.-+++|.|+-|+||||++..+++....+.- +..+..++-.-+-...-.-.+.+|.+. ..+.+++..=..+.|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 46778999999999999999999998886542 466666665544443444455555422 123335555455555
Q ss_pred HHHhcC
Q 022670 251 CQRLKK 256 (294)
Q Consensus 251 ~~~L~~ 256 (294)
....++
T Consensus 127 nai~~g 132 (300)
T COG4240 127 NAIARG 132 (300)
T ss_pred HHHhcC
Confidence 566565
No 367
>PRK13948 shikimate kinase; Provisional
Probab=95.85 E-value=0.009 Score=48.97 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.|.++|+.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998765
No 368
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.84 E-value=0.021 Score=48.01 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=30.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh-----cCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME-----DNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
+..|.|++|+||||++..+...... ...-...+-++......+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 6889999999999877776665511 122344444555544466666666655
No 369
>PRK06820 type III secretion system ATPase; Validated
Probab=95.84 E-value=0.026 Score=52.54 Aligned_cols=94 Identities=19% Similarity=0.314 Sum_probs=54.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh-CCC-----------CCCCCCH-
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL-GMK-----------FDLNDSI- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~-~~~-----------~~~~~~~- 243 (294)
+-..++|+|..|+|||||++.+..... -+..+..-+.+.. ++ ..++++.. ... .+.+.-.
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGerg--rE-v~ef~e~~l~~~~~~rtvvv~atsd~p~~~r 234 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGERG--RE-VREFLEQVLTPEARARTVVVVATSDRPALER 234 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccCh--HH-HHHHHHHhhccCCceeEEEEEeCCCCCHHHH
Confidence 456789999999999999998886332 2344555555542 12 33333332 111 1111001
Q ss_pred ---HHHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 244 ---FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ---~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
......+.+++++ ++++|+++||+..- ....++.
T Consensus 235 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REis 273 (440)
T PRK06820 235 LKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIG 273 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHHH
Confidence 1123446666653 49999999999776 3444443
No 370
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.84 E-value=0.045 Score=44.34 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=44.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHHhc
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLN---DSIFHRAHQLCQRLK 255 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~l~~~L~ 255 (294)
+++.|.|.+|+||||+|..+...... ..+++.... +...+....|-.......... +....+...+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 46899999999999999999865431 123333333 333455555543332221111 111224444444444
Q ss_pred CCCeEEEEEeCCCC
Q 022670 256 KEKRILIILDNIWT 269 (294)
Q Consensus 256 ~~kr~LiVlDdvw~ 269 (294)
+ .. +|++|.+..
T Consensus 76 ~-~~-~VlID~Lt~ 87 (170)
T PRK05800 76 P-GR-CVLVDCLTT 87 (170)
T ss_pred C-CC-EEEehhHHH
Confidence 3 23 688887643
No 371
>PF13245 AAA_19: Part of AAA domain
Probab=95.82 E-value=0.027 Score=39.06 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=19.1
Q ss_pred CccEEEEEecCCCcHH-HHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKT-TLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKT-tLa~~v~~~~ 202 (294)
+.+++.|.|.+|+||| |++..+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567788999999999 5555555544
No 372
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.04 Score=50.67 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCC---------ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 164 KVFQDVVEALKDNK---------HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 164 ~~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.-++.|.+++...+ .|==.++|++|+|||++..++++..+
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 34566666666432 12245899999999999999998777
No 373
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.81 E-value=0.0097 Score=52.04 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=23.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
+.|+|+|-||+||||++.++.......
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 478999999999999999999877643
No 374
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.81 E-value=0.01 Score=49.33 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+..+|.|+|++|+||||||+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999998664
No 375
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.80 E-value=0.059 Score=50.22 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=65.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc-----------CCCCEEEEEEcCCCCChHHHHHHHHHHhC-CCC------C
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED-----------NLFDEVVMAELTQNLDPQKIQDQLASDLG-MKF------D 238 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-----------~~f~~~~wv~vs~~~~~~~~~~~i~~~~~-~~~------~ 238 (294)
+-+-++|.|-.|+|||||+..+.+..+.. +.=..++++-+.+.....+.+.+.+..-+ ... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 46778999999999999999998765410 00015677788887666776666666544 221 0
Q ss_pred CCCC-H-----HHHHHHHHHHhc-C-CCeEEEEEeCCCCc-ccccccc
Q 022670 239 LNDS-I-----FHRAHQLCQRLK-K-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 239 ~~~~-~-----~~~~~~l~~~L~-~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
...+ . ....-.+.|+++ + ++++|+++||+..- ....++.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REis 267 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVS 267 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHH
Confidence 0111 1 123445778877 2 59999999999665 4455543
No 376
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.80 E-value=0.0076 Score=53.72 Aligned_cols=93 Identities=20% Similarity=0.182 Sum_probs=50.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK-FDLNDSIFHRAHQLCQRLK 255 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~l~~~L~ 255 (294)
....+.|+|..|+|||||++.+....... ...+.+.-..+..... .+.. ++... .......-...+.+...|+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~--~~~~-~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPH--PNYV-HLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCC--CCEE-EEEecCCCCCcCccCHHHHHHHHhc
Confidence 45789999999999999999988654321 1223332111111111 0000 00000 0000111234556667777
Q ss_pred CCCeEEEEEeCCCCccccccc
Q 022670 256 KEKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 256 ~~kr~LiVlDdvw~~~~w~~l 276 (294)
. ..=.|++|++...+.|+-+
T Consensus 217 ~-~pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 217 M-RPDRIILGELRGDEAFDFI 236 (308)
T ss_pred C-CCCeEEEeccCCHHHHHHH
Confidence 7 7777899999988777644
No 377
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.79 E-value=0.0084 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~ 199 (294)
.-..++|+|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34678999999999999999986
No 378
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.79 E-value=0.13 Score=43.74 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=32.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
.-.++.|.|.+|+|||+++.++..+.-..... .++|++.-. +..++...+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~-~vly~s~E~--~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGK-PVLFFSLEM--SKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-ceEEEeCCC--CHHHHHHHH
Confidence 34688999999999999999987665432122 445555433 344444443
No 379
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.78 E-value=0.049 Score=50.48 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=56.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
+-..++|+|..|+|||||++.+....+ -+..+.+.+.+ .-...++..+.+..-..+ .+.+.-.
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 457799999999999999998886443 12233333333 334555555554432221 1111111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++|+++||+..- ....++
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REi 249 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREI 249 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 1233446677743 49999999999776 344443
No 380
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.78 E-value=0.0084 Score=48.02 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~ 201 (294)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 381
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.78 E-value=0.016 Score=51.40 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=52.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKE 257 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 257 (294)
.+.|.|+|..|+||||+++++.+.......-+.++-+.-+.+..... . +.+...... ........++..|+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~--~---~~v~~~~~~--~~~~~~~~l~~aLR~- 203 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA--P---NVVQLRTSD--DAISMTRLLKATLRL- 203 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC--C---CEEEEEecC--CCCCHHHHHHHHhcC-
Confidence 45678999999999999999997654211112222222111111000 0 000010111 111456778888988
Q ss_pred CeEEEEEeCCCCccccccc
Q 022670 258 KRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 258 kr~LiVlDdvw~~~~w~~l 276 (294)
..=.||+.++...+.|+-+
T Consensus 204 ~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 204 RPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCCEEEEeccCCHHHHHHH
Confidence 7778889999999887654
No 382
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.024 Score=49.70 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
...++|||++|.|||-||++|+....+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 5668999999999999999999988854
No 383
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.77 E-value=0.033 Score=46.16 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+.|+|.|+.|+||||+++.+.+....
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999987754
No 384
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.047 Score=46.58 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=38.5
Q ss_pred ccccccHHHHHHHHHHHhc-------------CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC
Q 022670 156 FAAFDSRMKVFQDVVEALK-------------DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN 219 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 219 (294)
++-+-|.+....++.+.+. =.+.+-+.++|++|.|||-||++|+++.. +.|+.||..
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs 215 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS 215 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH
Confidence 3334445555555555443 12456688999999999999999997544 356777753
No 385
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.74 E-value=0.03 Score=52.17 Aligned_cols=97 Identities=20% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCC--------CCCCCCH---
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMK--------FDLNDSI--- 243 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~--------~~~~~~~--- 243 (294)
.+-..++|.|..|+|||||++.+..... -+..+.+-+.+. -...++...+...-... .+.+.-.
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 3567899999999999999999986443 233344444433 34445445544331111 1111111
Q ss_pred -HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 244 -FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 244 -~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
....-.+.|++++ ++++|+++||+..- ....++
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REi 272 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREI 272 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 1223445666643 49999999999776 333443
No 386
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.73 E-value=0.018 Score=51.82 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=38.5
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+...++|.+..+..+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456788999988877755544445568999999999999999997754
No 387
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.72 E-value=0.022 Score=49.63 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHH
Q 022670 167 QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHR 246 (294)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 246 (294)
+.|.++ ......+|.|.|..|+||||+++.+.+.... .-..++.+.-+.++.... ..|+..... .....
T Consensus 70 ~~l~~~-~~~~~GlilisG~tGSGKTT~l~all~~i~~--~~~~iitiEdp~E~~~~~-----~~q~~v~~~---~~~~~ 138 (264)
T cd01129 70 EIFRKL-LEKPHGIILVTGPTGSGKTTTLYSALSELNT--PEKNIITVEDPVEYQIPG-----INQVQVNEK---AGLTF 138 (264)
T ss_pred HHHHHH-HhcCCCEEEEECCCCCcHHHHHHHHHhhhCC--CCCeEEEECCCceecCCC-----ceEEEeCCc---CCcCH
Confidence 334343 3445678999999999999999988765431 112333333222222211 112211111 11135
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCCccccc
Q 022670 247 AHQLCQRLKKEKRILIILDNIWTKLEFD 274 (294)
Q Consensus 247 ~~~l~~~L~~~kr~LiVlDdvw~~~~w~ 274 (294)
...+...|+. ..=.|+++++.+.+...
T Consensus 139 ~~~l~~~lR~-~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 139 ARGLRAILRQ-DPDIIMVGEIRDAETAE 165 (264)
T ss_pred HHHHHHHhcc-CCCEEEeccCCCHHHHH
Confidence 5667788887 77888999999886543
No 388
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.71 E-value=0.033 Score=51.99 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=53.8
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHH--hCC------CCCCCCC----
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASD--LGM------KFDLNDS---- 242 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~--~~~------~~~~~~~---- 242 (294)
.+-..++|+|..|+|||||++.+...... -...++ -+.+. -...++..+.+.. +.. ..+.+.-
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~-~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIA-LIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEE-EEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 46688999999999999999988864332 122222 23222 2344443332211 100 1111111
Q ss_pred HHHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 243 IFHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 243 ~~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
.....-.+.|++++ ++++||++||+..- ....++
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEi 267 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREI 267 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHH
Confidence 11233446666643 49999999999776 344444
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.71 E-value=0.011 Score=47.90 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
|.|.|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998854
No 390
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.71 E-value=0.049 Score=51.75 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=33.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC-CEEEEEEcCCCCChHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF-DEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~ 228 (294)
.-+++.|.|.+|+||||||.++...--. .+ +.++||+..+ +..++.++
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~--~~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGII--HFDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEEEEec--CHHHHHHH
Confidence 4688999999999999999998643221 12 4567777653 44555444
No 391
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.71 E-value=0.06 Score=50.52 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=64.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc---CCCCEEEEEEcCCC-CChHHHHHHHHHHhCCC--------CCCCCCH-
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED---NLFDEVVMAELTQN-LDPQKIQDQLASDLGMK--------FDLNDSI- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~--------~~~~~~~- 243 (294)
+-.-++|.|-.|+|||||+..+.+..... ..| .++++-+.+. -.+.+++.++...=..+ .+.+.-.
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 46778999999999999999999876532 112 5677777765 45566777766532111 1111111
Q ss_pred ---HHHHHHHHHHhc-C-CCeEEEEEeCCCCc-ccccccc
Q 022670 244 ---FHRAHQLCQRLK-K-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ---~~~~~~l~~~L~-~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
......+.|+++ + ++++|+++||+..- ....++.
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIs 260 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREIS 260 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHH
Confidence 123455788887 3 69999999999765 4444443
No 392
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.019 Score=46.67 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++.|.|++|+||+||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999866
No 393
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.70 E-value=0.0089 Score=46.19 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.+++|+|..|+|||||.+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34679999999999999999988644
No 394
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.70 E-value=0.042 Score=45.20 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988765
No 395
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.031 Score=50.70 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=42.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.....++|.+.....|...+..++. ..+.|+|+.|+||||||..+....-.
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3456789999999999999887764 45889999999999999999987653
No 396
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.68 E-value=0.012 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=25.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDN 206 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~ 206 (294)
++|+|+|.+|+|||||+..+......+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999887653
No 397
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.68 E-value=0.035 Score=46.05 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 169 VVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 169 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
.+..+..++-+++.|.|.+|+||||+++.+.......
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3333434556788999999999999999998877653
No 398
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.67 E-value=0.053 Score=51.07 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=61.6
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCHH-
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFDE-VVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSIF- 244 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~~- 244 (294)
+-.-++|.|-.|+|||||| ..+.+... -+. ++++-+.+.. ...++..++...=..+ .+++....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 5677899999999999996 57776532 343 6788888764 4566666665432111 11111111
Q ss_pred ---HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccccC
Q 022670 245 ---HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIGI 278 (294)
Q Consensus 245 ---~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~~ 278 (294)
.....+.|++++ +++.|||+||+..- ..+..+..
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL 275 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSL 275 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHh
Confidence 123446677743 49999999999877 55666543
No 399
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.65 E-value=0.011 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|.|+|+.|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998765
No 400
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.65 E-value=0.12 Score=50.04 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=72.8
Q ss_pred cccccHHHHHHHHHHHhc----C-CCccEEEEEecCCCcHHHHHHHHHHHhhh---cC---CCCEEEEEEcCCCCChHHH
Q 022670 157 AAFDSRMKVFQDVVEALK----D-NKHNIIGVYEMGGVGKTTLVKQVAKQVME---DN---LFDEVVMAELTQNLDPQKI 225 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~---~f~~~~wv~vs~~~~~~~~ 225 (294)
+.+-+|+.+..+|-+++. + +....+.|.|-+|+|||..+..|.+..+. +. .|+. +.|+--.--.+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 344568888888887765 2 23458999999999999999999986641 22 2432 34444455678999
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHhc---C-CCeEEEEEeCCCCc
Q 022670 226 QDQLASDLGMKFDLNDSIFHRAHQLCQRLK---K-EKRILIILDNIWTK 270 (294)
Q Consensus 226 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~---~-~kr~LiVlDdvw~~ 270 (294)
...|.+++...... -..-++.|..+.. . .+.++|++|+++..
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDIL 520 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHH
Confidence 99999988654221 2222344444443 1 37899999998654
No 401
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.65 E-value=0.021 Score=52.20 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=30.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
+.-+|+|+|..|+|||||+..+....+.+ +...+-.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~--~~V~~ik~~~~ 43 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER--FSVGYYKHGCH 43 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC--ceEEEEEeCCC
Confidence 45689999999999999999999988743 55544444433
No 402
>PRK06761 hypothetical protein; Provisional
Probab=95.64 E-value=0.025 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 57899999999999999999988763
No 403
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.012 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.|.++||.|+||||+.+.+.+....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 45889999999999999999988774
No 404
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.1 Score=45.51 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=39.9
Q ss_pred cccCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 152 EVKDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
|...+.++-|.+...++|.+... + ...+=|-+||.+|.|||-||++|+|....
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA 245 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA 245 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch
Confidence 44556777788888887777643 1 13455789999999999999999987663
No 405
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.62 E-value=0.012 Score=48.52 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 406
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.62 E-value=0.012 Score=50.40 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred EEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 183 VYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 183 I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
|+|++|+||||+++.+.+..... -..++-|++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEc
Confidence 68999999999999999988653 233344544
No 407
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.026 Score=48.16 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=35.7
Q ss_pred ccccccHHHHHHHHHHHhc-------------CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFDSRMKVFQDVVEALK-------------DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.++-|.+-.+.++.+... =+..+-+.++|++|+|||.||++|.++...
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 5556666655655555432 134667889999999999999999997763
No 408
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.57 E-value=0.016 Score=46.35 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
++++|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999877643
No 409
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.57 E-value=0.088 Score=49.54 Aligned_cols=101 Identities=16% Similarity=0.273 Sum_probs=64.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCCC-------------CCCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMKF-------------DLNDS 242 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~~-------------~~~~~ 242 (294)
+-.-++|.|-.|+|||||+..+........ =+.++++-+.+.. ...+++.++...--.+. ....+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~-~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAH-GGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhc-CCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 567789999999999999998887633211 1678888887654 45667766655211000 00011
Q ss_pred H------HHHHHHHHHHhcC-CC-eEEEEEeCCCCc-cccccccC
Q 022670 243 I------FHRAHQLCQRLKK-EK-RILIILDNIWTK-LEFDKIGI 278 (294)
Q Consensus 243 ~------~~~~~~l~~~L~~-~k-r~LiVlDdvw~~-~~w~~l~~ 278 (294)
. ....-.+.|++++ ++ ++||++||+..- ....++..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl 283 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSA 283 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHH
Confidence 1 1234557888854 24 999999999876 44555543
No 410
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.57 E-value=0.037 Score=42.24 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=33.2
Q ss_pred cccccHHHHHHHHHHHhc----C---CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 157 AAFDSRMKVFQDVVEALK----D---NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++|..-..+.+++.+. + .+.-|++..|..|+|||.+++.+.+..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 445665555555555443 2 356788999999999999999998874
No 411
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.57 E-value=0.012 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++.|+|..|+|||||++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998665
No 412
>PRK14526 adenylate kinase; Provisional
Probab=95.57 E-value=0.05 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|+|++|+||||+++.+.....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999986543
No 413
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.57 E-value=0.056 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+|+|.|..|+||||+++.+.+..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999986653
No 414
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.56 E-value=0.013 Score=48.59 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|.+|+||||+|+.+.....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998653
No 415
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.53 E-value=0.18 Score=40.38 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 161 SRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.++..+.|.+.+..+++. .+.++|..|+||+++|..+....-
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4566677788887777654 578999999999999999988653
No 416
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.52 E-value=0.016 Score=48.62 Aligned_cols=26 Identities=31% Similarity=0.624 Sum_probs=22.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|.|-||+||||++.++..-...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999999988876654
No 417
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.51 E-value=0.018 Score=52.30 Aligned_cols=87 Identities=29% Similarity=0.411 Sum_probs=57.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE-EEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE-VVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLK 255 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 255 (294)
..+.+.++|.||+||||++-++.. .. .-|.. +.++.+.+--+...+.-.+...++..... -+.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 467899999999999999999998 44 44754 44455544445555555554546554322 1123455667777
Q ss_pred CCCeEEEEEeCCCCc
Q 022670 256 KEKRILIILDNIWTK 270 (294)
Q Consensus 256 ~~kr~LiVlDdvw~~ 270 (294)
+ +|.++|+||.-..
T Consensus 87 ~-rr~llvldncehl 100 (414)
T COG3903 87 D-RRALLVLDNCEHL 100 (414)
T ss_pred h-hhHHHHhcCcHHH
Confidence 7 9999999997554
No 418
>PLN02459 probable adenylate kinase
Probab=95.51 E-value=0.093 Score=45.40 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..|.|.|++|+||||+++.+.+...
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577889999999999999997654
No 419
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.50 E-value=0.013 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..+.|.|+|++|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999999754
No 420
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.48 E-value=0.023 Score=50.63 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=24.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....|.++|+.|+||||+++.+.....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999997665
No 421
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.47 E-value=0.0089 Score=53.80 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
....|.|+|..|+||||+++++....... +.++-+.-+.+..... ..+...-+..........-...+.++..|+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~---~ri~tiEd~~El~l~~-~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI---ERLITVEDAREIVLSN-HPNRVHLLASKGGQGRAKVTTQDLIEACLRL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCC---CeEEEecCCCcccccc-CCCEEEEEecCCCCCcCcCcHHHHHHHHhcc
Confidence 45679999999999999999988755421 1222222222211100 0000000000001111122356678888998
Q ss_pred CCeEEEEEeCCCCccccccccCCcCCCCCC
Q 022670 257 EKRILIILDNIWTKLEFDKIGIPSGNKDEH 286 (294)
Q Consensus 257 ~kr~LiVlDdvw~~~~w~~l~~~~~~~~~~ 286 (294)
..=.||+.++...+.|+-+. +...+|.|
T Consensus 235 -~PD~IivGEiR~~ea~~~l~-a~~tGh~G 262 (332)
T PRK13900 235 -RPDRIIVGELRGAEAFSFLR-AINTGHPG 262 (332)
T ss_pred -CCCeEEEEecCCHHHHHHHH-HHHcCCCc
Confidence 78889999999998886543 44455544
No 422
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.43 E-value=0.11 Score=48.40 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=53.7
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC-CCChHHHHHHHHHHhCCCC-----CC-CCCH-----
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ-NLDPQKIQDQLASDLGMKF-----DL-NDSI----- 243 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~~~~-----~~-~~~~----- 243 (294)
.+-..++|+|..|+|||||.+.+..... -+..+.+.+.. ...+.++............ .. ..+.
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 3567789999999999999999987443 23344445544 3345555544443221110 00 0111
Q ss_pred -HHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 244 -FHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 244 -~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
......+.+++.+ +++.|+++|++..-
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCchHH
Confidence 1223345566643 48999999999865
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.43 E-value=0.21 Score=45.64 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCC----CccEEEEEecCCCcHHH-HHHHHHH
Q 022670 162 RMKVFQDVVEALKDN----KHNIIGVYEMGGVGKTT-LVKQVAK 200 (294)
Q Consensus 162 r~~~~~~l~~~l~~~----~~~vi~I~G~gG~GKTt-La~~v~~ 200 (294)
....+..+..++.++ +.++|.+||+.|+|||| ||+..+.
T Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 183 FSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred HHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHH
Confidence 344455566665544 58999999999999986 5554443
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.43 E-value=0.013 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-..++|+|+.|+|||||...+.-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998874
No 425
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.43 E-value=0.039 Score=51.76 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=50.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
.-.++.|.|.+|+|||||+.++....... =..++|++..+ +..++... .+.++.+... ..+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i- 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATI- 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH-
Confidence 35688999999999999999998765421 23456776543 33444322 4445432211 12333333333
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
+..+.-+||+|.+...
T Consensus 153 ---~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 153 ---EEEKPDLVVIDSIQTM 168 (446)
T ss_pred ---HhhCCCEEEEechhhh
Confidence 3225668999998643
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.43 E-value=0.015 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 427
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.42 E-value=0.039 Score=49.08 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+++.+.|-||+||||+|.+..-....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 67889999999999999877765543
No 428
>PRK15453 phosphoribulokinase; Provisional
Probab=95.42 E-value=0.019 Score=50.16 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+..+|+|.|.+|+||||+++.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999986554
No 429
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.012 Score=47.14 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.3
Q ss_pred cEEEEEecCCCcHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~ 199 (294)
+.|+|.|-+|+||||+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 368999999999999999988
No 430
>PLN02200 adenylate kinase family protein
Probab=95.42 E-value=0.016 Score=49.56 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.|.|++|+||||+|+.+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999987554
No 431
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.42 E-value=0.014 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
|.|.|++|+||||+|+.+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999997643
No 432
>PLN02674 adenylate kinase
Probab=95.41 E-value=0.099 Score=44.88 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...|.|.|++|+||||+++.+.++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999997554
No 433
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.39 E-value=0.1 Score=49.85 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=55.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC---------------CCCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF---------------DLND 241 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---------------~~~~ 241 (294)
.-.++.|.|.+|+|||+|+.++....-.. =+.++|++... +..++.+.+ ++++.+. +...
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~--~~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEE--SRAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC--CHHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 35788899999999999999988655322 35677776655 355555443 3333221 1113
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 242 SIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 242 ~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
+.++....+.+.+...+.-+||+|.+..
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 3455666666666543555899999864
No 434
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=95.38 E-value=0.077 Score=50.31 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=60.9
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCHH-
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFDE-VVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSIF- 244 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~~- 244 (294)
+-.-++|.|-.|+|||+|| ..+.+... -+. ++++-+.+.. .+.+++.++...=..+ .+++....
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~~~----~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQKD----SDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhhcC----CCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 5677899999999999995 66665432 344 4788888753 5566666665432111 11111111
Q ss_pred ---HHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 245 ---HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 245 ---~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
.....+-|++++ ++++|||+||+..- ..+.++.
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REis 273 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQIS 273 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHH
Confidence 223446666654 49999999999876 4566553
No 435
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.37 E-value=0.019 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|.|-||+||||++.++......
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57888999999999999998887754
No 436
>PLN02796 D-glycerate 3-kinase
Probab=95.37 E-value=0.015 Score=52.18 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..-+|+|.|..|+|||||++.+......
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3467899999999999999999987653
No 437
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=95.35 E-value=0.065 Score=50.62 Aligned_cols=97 Identities=11% Similarity=0.166 Sum_probs=59.3
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCCE-EEEEEcCCCC-ChHHHHHHHHHHhCCC--------CCCCCCHH-
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFDE-VVMAELTQNL-DPQKIQDQLASDLGMK--------FDLNDSIF- 244 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~~~~~~~~- 244 (294)
+-.-++|.|-.|+|||||| ..+.+... -+. ++++-+.+.. ...++...+...=... .+++....
T Consensus 161 rGQR~~I~g~~g~GKt~Lal~~i~~~~~----~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~ 236 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKD----SDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY 236 (502)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHhhcC----CCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH
Confidence 5677899999999999995 66665422 343 4777887754 4566666655431111 11111111
Q ss_pred ---HHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 245 ---HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 245 ---~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
.....+-|++++ +++.|||+||+..- ..+.++.
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REis 274 (502)
T PRK13343 237 LAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELS 274 (502)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHH
Confidence 123345666643 49999999999877 4555553
No 438
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.34 E-value=0.1 Score=49.06 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCC-EEEEEEcCCC-CChHHHHHHHHHHhCCC--------CCCCCCHH-
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFD-EVVMAELTQN-LDPQKIQDQLASDLGMK--------FDLNDSIF- 244 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~vs~~-~~~~~~~~~i~~~~~~~--------~~~~~~~~- 244 (294)
+-.-++|.|-.|+|||||| ..+.+... -+ .++++-+.+. -...++..++...=... .+++....
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~~----~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQKG----QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhccc----CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 5677899999999999995 45554322 23 3477888765 35566666655431111 11111111
Q ss_pred ---HHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 245 ---HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 245 ---~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
.....+.|++++ +++.|||+||+..- ..+.++.
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REis 253 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMS 253 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHHH
Confidence 122345666653 49999999999877 4565554
No 439
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.33 E-value=0.019 Score=50.35 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|+|-||+||||++-++......
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999998887754
No 440
>PRK14531 adenylate kinase; Provisional
Probab=95.33 E-value=0.017 Score=47.24 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=22.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998654
No 441
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.036 Score=50.58 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=42.6
Q ss_pred cCccccccHHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|.+.....|.+.+..++.. .+.++|+.|+||+|+|..+....-.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 34568899999999999998887654 5889999999999999998886643
No 442
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.32 E-value=0.016 Score=53.56 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.-.+.|+|+|..|+|||||++.+.....
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4578899999999999999999997643
No 443
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.32 E-value=0.017 Score=43.29 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~ 201 (294)
|+|+|+.|+|||||.+.+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 444
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.32 E-value=0.033 Score=49.99 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=42.1
Q ss_pred cccccHHHHHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 157 AAFDSRMKVFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+++|.++.+++|++.+.+ .+.+++.++|+.|.|||||+..+.+-...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 4789999999999999874 36799999999999999999999986663
No 445
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.31 E-value=0.016 Score=48.30 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998886
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.31 E-value=0.021 Score=40.64 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999988764
No 447
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.13 Score=46.27 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=35.7
Q ss_pred cccc-HHHHHHHHHHHhcCCCcc-EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 158 AFDS-RMKVFQDVVEALKDNKHN-IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 158 ~~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++| .+...+.|...+..++.. ...++|+.|+||||+|..+.+..-
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 4455 666777888888777654 458999999999999999987653
No 448
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=95.30 E-value=0.038 Score=51.45 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=54.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCC------CCCCCCH------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMK------FDLNDSI------ 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~------~~~~~~~------ 243 (294)
+-..++|+|..|+|||||.+.+..... -+.++...+... -...++..+++..-..+ .....+.
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~ 249 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQG 249 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHH
Confidence 567799999999999999998886433 223333333322 24445444443211110 0001111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
....-.+.|++++ ++++|+++||+-.- ..+.++.
T Consensus 250 ~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEis 285 (455)
T PRK07960 250 AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA 285 (455)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHH
Confidence 1223335566643 49999999999776 4455543
No 449
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.28 E-value=0.022 Score=50.50 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=25.9
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 175 DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 175 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+++.++|++.|-||+||||++-++..-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 456799999999999999999988876654
No 450
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.27 E-value=0.036 Score=46.08 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHH
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
+.+++|.+..+..|.=.... ..-+.++|.+|+|||+||+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 45778888777766655543 35789999999999999999886
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.25 E-value=0.058 Score=43.90 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=29.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
++.|.|.+|+|||+|+.++....-. .. ..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-~g-~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-RG-EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-CC-CcEEEEECCC--CHHHHHHH
Confidence 3678999999999999988664432 11 3456776644 45555444
No 452
>PLN02165 adenylate isopentenyltransferase
Probab=95.24 E-value=0.018 Score=51.46 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=25.8
Q ss_pred cCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 174 KDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 174 ~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+....+|+|+|+.|+||||||..+.....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 455677999999999999999999998754
No 453
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.23 E-value=0.016 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|+|-||+||||++.++..-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999998876643
No 454
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.23 E-value=0.016 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+.--
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999764
No 455
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.22 E-value=0.013 Score=49.16 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.-|.|+|.+|+|||||+..+..+.-.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 45899999999999999999975543
No 456
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.21 E-value=0.018 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+|.++|.+|+||||+|+.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 467889999999999999998754
No 457
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.21 E-value=0.015 Score=47.39 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~ 200 (294)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 458
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.20 E-value=0.017 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+.|-++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998744
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.20 E-value=0.017 Score=49.85 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999999744
No 460
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.19 E-value=0.022 Score=45.02 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++++.|.+|+||||++..+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999987654
No 461
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.19 E-value=0.017 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 462
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.18 E-value=0.045 Score=48.89 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=31.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQ 226 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 226 (294)
.+++.+.|.||+||||+|-+..-...... ...+-|++-+.++.-+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhh
Confidence 46888999999999999999666555432 335555555444444444
No 463
>PRK06851 hypothetical protein; Provisional
Probab=95.17 E-value=0.33 Score=44.19 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=28.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEE
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVV 212 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~ 212 (294)
+--+++.|.|.+|+|||||++.++.....+. ++..+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~ 247 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEV 247 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEE
Confidence 4457899999999999999999999876533 44433
No 464
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.16 E-value=0.086 Score=49.76 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhc-----CC--CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEE
Q 022670 162 RMKVFQDVVEALK-----DN--KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMA 214 (294)
Q Consensus 162 r~~~~~~l~~~l~-----~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv 214 (294)
....+.++-.||. .. +.++..|.|++|+||||.++.+..... +..+=|.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----~~~~Ew~ 142 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----YQLIEWS 142 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----ceeeeec
Confidence 4455667777776 23 467999999999999999999997665 4455565
No 465
>PRK08356 hypothetical protein; Provisional
Probab=95.16 E-value=0.017 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~ 199 (294)
.++|.|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999993
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.16 E-value=0.083 Score=50.54 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=52.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC---------------CC--
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF---------------DL-- 239 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---------------~~-- 239 (294)
..+++.|.|.+|+|||+|+.++....-.+ +=+.++|++... +..++.+.+. .++.+. ..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHHH-HcCCCHHHHhhCCeEEEEecCcccc
Confidence 56889999999999999999876543321 124567777665 4445544442 122110 00
Q ss_pred ------CCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 240 ------NDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 240 ------~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
..+.+.+...+.+.+...+.-.||+|.+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 012344555555555432445688888865
No 467
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=95.16 E-value=0.037 Score=47.69 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=31.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQ 223 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 223 (294)
+.|+|+|-|||||+|.+.++........ ..+.-|-+.++.+-+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G--~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMG--KKVLQIGCDPKADST 43 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESSSSTSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhcc--ceeeEecccCCCccc
Confidence 4689999999999999999998776542 445556666555444
No 468
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.15 E-value=0.017 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+..-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 469
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.15 E-value=0.018 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999999864
No 470
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.14 E-value=0.018 Score=47.37 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||.+.+..-
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998863
No 471
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.023 Score=45.40 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999888766
No 472
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.14 E-value=0.018 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|++|+|||||.+-+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 567899999999999999998875
No 473
>PRK13768 GTPase; Provisional
Probab=95.12 E-value=0.024 Score=49.04 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.++.|.|.+|+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57889999999999999988876654
No 474
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.11 E-value=0.029 Score=44.96 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
+...|+|+|..|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4456899999999999999999874
No 475
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.11 E-value=0.023 Score=46.61 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++|.|+|+.|+||+||++.+.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999764
No 476
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.11 E-value=0.024 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|++.|-||+||||++.++.....
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHH
Confidence 3688999999999999998877554
No 477
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.08 E-value=0.13 Score=49.28 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHh------CCCC---
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDL------GMKF--- 237 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~------~~~~--- 237 (294)
+++.|.. .+-..++|.|..|+|||+|.+.+.+. ..-+.++++-+.+. ..+.+++.++-+.. +.+.
T Consensus 216 vID~lfPi~kGqr~~I~gg~G~GKT~l~~~lak~----s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~r 291 (591)
T TIGR01042 216 VLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY----SNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKR 291 (591)
T ss_pred hhhhccchhcCCeEEEEcCCCcCHHHHHHHHHhc----cCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccc
Confidence 3444432 35678999999999999999998652 23678888888764 45567776653221 0000
Q ss_pred ------CCCCCH------HHHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 238 ------DLNDSI------FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 238 ------~~~~~~------~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
..+++. ....-.+.+++++ ++++|+++|++..- +...++
T Consensus 292 tvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~AeAlREI 344 (591)
T TIGR01042 292 TTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREI 344 (591)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHH
Confidence 001121 1123446677754 59999999998664 333444
No 478
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.07 E-value=0.032 Score=49.91 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=56.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKK 256 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (294)
..+.|.|+|..|+|||||++.+.........-+.++-+.-..+..... .+. -++ ...... .....++..|+.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~--~~~-v~~--~~~~~~---~~~~ll~~aLR~ 218 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAA--ENY-VQY--HTSIDV---NMTALLKTTLRM 218 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCC--CCE-EEE--ecCCCC---CHHHHHHHHhcC
Confidence 356789999999999999999987542111112222222222211100 000 000 001112 345667888887
Q ss_pred CCeEEEEEeCCCCccccccccCCcCCCCCC
Q 022670 257 EKRILIILDNIWTKLEFDKIGIPSGNKDEH 286 (294)
Q Consensus 257 ~kr~LiVlDdvw~~~~w~~l~~~~~~~~~~ 286 (294)
..=.||+.+|...+.|+-+ .+...+|.|
T Consensus 219 -~PD~IivGEiR~~Ea~~~l-~A~~tGh~G 246 (319)
T PRK13894 219 -RPDRILVGEVRGPEALDLL-MAWNTGHEG 246 (319)
T ss_pred -CCCEEEEeccCCHHHHHHH-HHHHcCCCc
Confidence 7777999999999888744 344444443
No 479
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.07 E-value=0.085 Score=49.29 Aligned_cols=97 Identities=23% Similarity=0.365 Sum_probs=54.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHHHhCCC--------CCCCCCH----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLASDLGMK--------FDLNDSI---- 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~~~~~--------~~~~~~~---- 243 (294)
+-..++|+|..|+|||||++.+..... -+..+...+... -...++..+.+..-..+ .+.+.-.
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~ 237 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKG 237 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 456789999999999999998886432 123333444432 24455554444321111 1111111
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 244 FHRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 244 ~~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
....-.+.+++.+ ++++||++||+..- ....++.
T Consensus 238 ~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REis 273 (440)
T TIGR01026 238 AYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIG 273 (440)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHH
Confidence 1223335566632 49999999999776 4444443
No 480
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.06 E-value=0.023 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999997665
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.04 E-value=0.041 Score=45.17 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC--CCCCCCH
Q 022670 166 FQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK--FDLNDSI 243 (294)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~--~~~~~~~ 243 (294)
...++.+... ....+.|+|..|+|||||++.+....... ...+.+.-....... ..... ++... .......
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~--~~~~~-~~~~~~~~~~~~~~ 86 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLP--HPNWV-RLVTRPGNVEGSGE 86 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCC--CCCEE-EEEEecCCCCCCCc
Confidence 3344444333 35689999999999999999988754421 122222111111100 00000 00000 0000112
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCccccccccC
Q 022670 244 FHRAHQLCQRLKKEKRILIILDNIWTKLEFDKIGI 278 (294)
Q Consensus 244 ~~~~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l~~ 278 (294)
....+.+...++. .+=.|+++++.+.+.|.-+..
T Consensus 87 ~~~~~~l~~~lR~-~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 87 VTMADLLRSALRM-RPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred cCHHHHHHHHhcc-CCCEEEEEccCcHHHHHHHHH
Confidence 2355667778887 778888999999988775543
No 482
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.04 E-value=0.019 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.|+++|.+|+|||||++.+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 483
>PRK13764 ATPase; Provisional
Probab=95.03 E-value=0.068 Score=51.73 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=53.5
Q ss_pred HHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCCCCCHHHHH
Q 022670 168 DVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDLNDSIFHRA 247 (294)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 247 (294)
.+.+.+.. ..+.|.|.|..|+||||+++++.+..... -..+..+.-+..+.... ...|... . ..+.....
T Consensus 248 ~l~~~l~~-~~~~ILIsG~TGSGKTTll~AL~~~i~~~--~riV~TiEDp~El~~~~----~i~q~~~--~-~~~~~~~~ 317 (602)
T PRK13764 248 KLKERLEE-RAEGILIAGAPGAGKSTFAQALAEFYADM--GKIVKTMESPRDLQVPP----EITQYSK--L-EGSMEETA 317 (602)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHHHHHHHHhhC--CCEEEEECCCccccCCC----cceEEee--c-cccHHHHH
Confidence 34454443 34558999999999999999999876532 12222333222222111 1111110 0 01222222
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCccccccc
Q 022670 248 HQLCQRLKKEKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 248 ~~l~~~L~~~kr~LiVlDdvw~~~~w~~l 276 (294)
. ..|+. +.=.|++|++.+.+.|+-+
T Consensus 318 ~---~lLR~-rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 318 D---ILLLV-RPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred H---HHHhh-CCCEEEECCCCCHHHHHHH
Confidence 2 23676 7788999999999988753
No 484
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.02 Score=47.83 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+.-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 485
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.02 E-value=0.082 Score=47.56 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHH
Q 022670 159 FDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
++|.+.....+.-.+.. -+.+-+.|.+|+|||+||+.+.....- ..+++.+.......+++...
T Consensus 26 ~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 56666665555444442 345789999999999999999987662 23567777777777776443
No 486
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.01 E-value=0.063 Score=49.04 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=57.8
Q ss_pred HHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH--HHhCCCCCCCCCHHHH
Q 022670 169 VVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA--SDLGMKFDLNDSIFHR 246 (294)
Q Consensus 169 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~ 246 (294)
+.+.+.. ....+.|.|+.|+||||+++.+.+.......=..++.+.-+-++..... +.+. .|.... .+....
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~-~~~~~~~q~evg----~~~~~~ 214 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSP-DDLLPPAQSQIG----RDVDSF 214 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCC-ceeecccccccC----CCccCH
Confidence 3444433 3457889999999999999999876643211123333332222111100 0000 111111 122245
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCCccccccc
Q 022670 247 AHQLCQRLKKEKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 247 ~~~l~~~L~~~kr~LiVlDdvw~~~~w~~l 276 (294)
...++..|+. ..=.|+++++.+.+.++..
T Consensus 215 ~~~l~~aLR~-~PD~I~vGEiRd~et~~~a 243 (372)
T TIGR02525 215 ANGIRLALRR-APKIIGVGEIRDLETFQAA 243 (372)
T ss_pred HHHHHHhhcc-CCCEEeeCCCCCHHHHHHH
Confidence 6778889998 8889999999999877653
No 487
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.022 Score=46.42 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+.-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999853
No 488
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.00 E-value=0.028 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|.|-||+||||++.++......
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAK 26 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999998876653
No 489
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.99 E-value=0.02 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|..|+|||||++.+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 490
>PHA02244 ATPase-like protein
Probab=94.99 E-value=0.089 Score=47.78 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 165 VFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+..++.. ...|.|+|+.|+|||+||++++....
T Consensus 108 ~~~ri~r~l~~--~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 108 ETADIAKIVNA--NIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 33455555543 23578899999999999999998755
No 491
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.02 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||++.+..-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 492
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.02 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999853
No 493
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.97 E-value=0.021 Score=46.52 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=22.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 46689999999999999999998643
No 494
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.97 E-value=0.086 Score=49.57 Aligned_cols=85 Identities=25% Similarity=0.286 Sum_probs=49.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
.-.++.|.|.+|+|||||+.++........ ..++|++.-+ +..++... .+.++..... ..+.+.+ .
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I----~ 163 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQI----C 163 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHH----H
Confidence 467899999999999999999976554321 2456765443 34443322 2334332111 1233333 3
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
+.++..+.-+||+|.+...
T Consensus 164 ~~i~~~~~~~vVIDSIq~l 182 (454)
T TIGR00416 164 ANIEEENPQACVIDSIQTL 182 (454)
T ss_pred HHHHhcCCcEEEEecchhh
Confidence 3333325668999998653
No 495
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.022 Score=47.73 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=22.2
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.. .+++|+|..|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999854
No 496
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.96 E-value=0.021 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 497
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.96 E-value=0.16 Score=46.12 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=30.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN 219 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 219 (294)
+++.|-|.+|+|||.||-.++............++++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 57889999999999999999998822233555566655543
No 498
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.95 E-value=0.048 Score=52.70 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=35.0
Q ss_pred ccccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 158 AFDSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+.|.+..+.|.++... ....+|.|+|+.|+||||+|+.++.....
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 345566666666666543 24568899999999999999999987764
No 499
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.17 Score=39.98 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=23.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
-+|.|.|.+|+||||+++++.+..+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 3899999999999999999999877
No 500
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.022 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
Done!