Query 022670
Match_columns 294
No_of_seqs 139 out of 1956
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:13:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 3.4E-21 1.2E-25 183.1 8.6 113 160-273 131-258 (549)
2 1vt4_I APAF-1 related killer D 99.7 4.4E-18 1.5E-22 167.9 7.1 117 159-276 130-262 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.7 1.6E-16 5.4E-21 163.5 10.3 121 155-276 122-254 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.6 3.4E-15 1.2E-19 142.9 8.5 120 156-276 123-254 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.3 2.5E-12 8.6E-17 96.4 7.7 78 7-96 1-79 (115)
6 1w5s_A Origin recognition comp 99.1 5.1E-10 1.8E-14 101.8 13.0 113 157-270 22-150 (412)
7 2v1u_A Cell division control p 99.0 6.2E-09 2.1E-13 93.6 14.7 115 157-271 19-143 (387)
8 2qby_A CDC6 homolog 1, cell di 99.0 1.6E-09 5.4E-14 97.4 10.2 114 157-270 20-140 (386)
9 2qby_B CDC6 homolog 3, cell di 99.0 2.3E-09 7.9E-14 96.6 11.1 113 157-270 20-145 (384)
10 1fnn_A CDC6P, cell division co 98.9 1.7E-08 5.7E-13 91.0 14.8 113 157-270 17-137 (389)
11 2qen_A Walker-type ATPase; unk 98.9 3.4E-09 1.2E-13 94.0 8.7 108 155-271 10-141 (350)
12 3te6_A Regulatory protein SIR3 98.8 5.3E-08 1.8E-12 85.6 13.6 113 157-271 20-145 (318)
13 2fna_A Conserved hypothetical 98.7 1.1E-07 3.6E-12 84.4 11.9 69 155-232 11-84 (357)
14 2chg_A Replication factor C sm 98.7 1.5E-07 5.1E-12 77.5 11.4 69 154-222 14-82 (226)
15 1jbk_A CLPB protein; beta barr 98.6 3.9E-07 1.3E-11 73.1 10.2 50 155-204 20-69 (195)
16 1njg_A DNA polymerase III subu 98.5 4.9E-07 1.7E-11 75.2 9.6 51 154-204 20-71 (250)
17 1sxj_B Activator 1 37 kDa subu 98.4 5.9E-07 2E-11 78.6 8.0 50 154-203 18-67 (323)
18 2p65_A Hypothetical protein PF 98.4 6.7E-07 2.3E-11 71.5 7.0 49 155-203 20-68 (187)
19 1iqp_A RFCS; clamp loader, ext 98.2 2E-06 6.8E-11 75.3 5.9 50 154-203 22-71 (327)
20 3h4m_A Proteasome-activating n 98.1 9.4E-06 3.2E-10 69.9 9.3 50 154-203 14-76 (285)
21 3pvs_A Replication-associated 98.1 4.1E-06 1.4E-10 77.2 7.0 51 153-203 22-75 (447)
22 2w58_A DNAI, primosome compone 98.1 1.6E-05 5.6E-10 64.7 9.5 90 162-270 34-127 (202)
23 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3E-05 1E-09 65.7 11.0 95 155-270 4-110 (262)
24 3cf0_A Transitional endoplasmi 98.0 1.8E-05 6.2E-10 68.9 9.7 95 154-269 12-119 (301)
25 1xwi_A SKD1 protein; VPS4B, AA 98.0 3.7E-05 1.3E-09 67.7 11.7 96 154-270 9-117 (322)
26 2chq_A Replication factor C sm 98.0 7.3E-06 2.5E-10 71.4 6.4 49 154-202 14-62 (319)
27 3ec2_A DNA replication protein 98.0 2.4E-05 8.1E-10 62.6 8.6 90 162-269 19-111 (180)
28 3b9p_A CG5977-PA, isoform A; A 98.0 3.4E-05 1.2E-09 66.8 10.1 50 154-203 18-79 (297)
29 1hqc_A RUVB; extended AAA-ATPa 97.9 3E-05 1E-09 67.9 7.9 66 155-225 10-80 (324)
30 3eie_A Vacuolar protein sortin 97.9 2.8E-05 9.5E-10 68.4 7.4 51 153-203 14-76 (322)
31 1jr3_A DNA polymerase III subu 97.9 4.3E-05 1.5E-09 68.1 8.8 50 155-204 14-64 (373)
32 3syl_A Protein CBBX; photosynt 97.8 4.3E-05 1.5E-09 66.4 8.4 48 158-205 32-94 (309)
33 3d8b_A Fidgetin-like protein 1 97.8 8.5E-05 2.9E-09 66.3 10.5 49 155-203 82-142 (357)
34 1sxj_A Activator 1 95 kDa subu 97.8 3.4E-05 1.2E-09 72.4 8.1 63 154-221 36-115 (516)
35 1qvr_A CLPB protein; coiled co 97.8 7.6E-05 2.6E-09 74.2 10.5 49 155-203 168-216 (854)
36 3vfd_A Spastin; ATPase, microt 97.8 8.9E-05 3.1E-09 66.9 9.7 50 154-203 112-173 (389)
37 2qp9_X Vacuolar protein sortin 97.8 3.9E-05 1.3E-09 68.4 7.2 50 154-203 48-109 (355)
38 1lv7_A FTSH; alpha/beta domain 97.8 0.00014 5E-09 61.4 10.3 50 154-203 9-70 (257)
39 2z4s_A Chromosomal replication 97.8 0.00015 5E-09 66.7 10.9 49 156-204 104-156 (440)
40 3uk6_A RUVB-like 2; hexameric 97.8 7.4E-05 2.5E-09 66.6 8.6 49 156-204 43-96 (368)
41 4b4t_L 26S protease subunit RP 97.7 0.00019 6.4E-09 65.6 10.8 96 154-270 178-286 (437)
42 3pfi_A Holliday junction ATP-d 97.7 0.00012 3.9E-09 64.6 9.2 50 154-203 26-80 (338)
43 4b4t_J 26S protease regulatory 97.7 0.00018 6.3E-09 64.8 10.4 97 153-270 144-253 (405)
44 3u61_B DNA polymerase accessor 97.7 0.00022 7.4E-09 62.5 10.5 50 154-203 23-73 (324)
45 2zan_A Vacuolar protein sortin 97.7 0.00015 5E-09 66.8 9.5 49 154-202 131-191 (444)
46 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00035 1.2E-08 68.5 12.8 48 156-203 185-232 (758)
47 1sxj_C Activator 1 40 kDa subu 97.7 0.00013 4.5E-09 64.4 8.7 50 154-203 22-71 (340)
48 2cvh_A DNA repair and recombin 97.6 0.0004 1.4E-08 56.9 10.5 87 177-270 19-117 (220)
49 4b4t_K 26S protease regulatory 97.6 0.00032 1.1E-08 63.9 10.6 51 154-204 169-232 (428)
50 4b4t_M 26S protease regulatory 97.6 0.00021 7.3E-09 65.2 9.4 52 153-204 177-241 (434)
51 4b4t_I 26S protease regulatory 97.6 0.00047 1.6E-08 62.5 11.2 97 153-270 178-287 (437)
52 4b4t_H 26S protease regulatory 97.6 0.00031 1E-08 64.3 9.9 50 155-204 207-269 (467)
53 2vhj_A Ntpase P4, P4; non- hyd 97.6 4.2E-05 1.4E-09 66.9 3.7 70 178-270 123-194 (331)
54 1d2n_A N-ethylmaleimide-sensit 97.5 0.00029 9.9E-09 60.1 8.8 29 175-203 61-89 (272)
55 3bos_A Putative DNA replicatio 97.5 0.00024 8.4E-09 58.8 7.9 61 156-218 27-90 (242)
56 3hu3_A Transitional endoplasmi 97.5 0.00029 9.9E-09 65.5 8.9 48 156-203 203-263 (489)
57 1l8q_A Chromosomal replication 97.5 0.00044 1.5E-08 60.5 9.5 42 163-204 20-63 (324)
58 3pxi_A Negative regulator of g 97.4 0.00025 8.4E-09 69.7 7.7 47 156-202 179-225 (758)
59 3t15_A Ribulose bisphosphate c 97.4 0.00025 8.5E-09 61.4 6.5 26 178-203 36-61 (293)
60 2ce7_A Cell division protein F 97.4 0.0009 3.1E-08 61.9 10.4 95 154-269 13-119 (476)
61 3pxg_A Negative regulator of g 97.3 0.00023 7.8E-09 65.9 6.0 48 156-203 179-226 (468)
62 3hr8_A Protein RECA; alpha and 97.3 0.0013 4.4E-08 58.5 10.6 87 177-270 60-151 (356)
63 3io5_A Recombination and repai 97.3 0.0021 7.3E-08 56.0 11.6 87 180-271 30-124 (333)
64 3lw7_A Adenylate kinase relate 97.3 0.00059 2E-08 53.5 7.5 20 179-198 2-21 (179)
65 1n0w_A DNA repair protein RAD5 97.3 0.0019 6.5E-08 53.6 10.9 93 177-270 23-131 (243)
66 2kjq_A DNAA-related protein; s 97.3 0.00052 1.8E-08 53.2 6.8 40 177-218 35-74 (149)
67 2x8a_A Nuclear valosin-contain 97.3 0.001 3.5E-08 57.0 9.4 50 154-203 7-69 (274)
68 1sxj_D Activator 1 41 kDa subu 97.3 0.00017 5.8E-09 63.7 4.4 50 154-203 34-83 (353)
69 2xxa_A Signal recognition part 97.3 0.067 2.3E-06 48.7 21.4 29 177-205 99-127 (433)
70 4fcw_A Chaperone protein CLPB; 97.3 0.00058 2E-08 59.2 7.3 60 157-218 17-85 (311)
71 2qgz_A Helicase loader, putati 97.2 0.0006 2.1E-08 59.5 7.3 54 162-217 133-190 (308)
72 2z43_A DNA repair and recombin 97.2 0.002 6.8E-08 56.5 10.6 93 177-270 106-215 (324)
73 1xp8_A RECA protein, recombina 97.2 0.0026 8.8E-08 56.8 11.1 87 177-270 73-164 (366)
74 2zr9_A Protein RECA, recombina 97.2 0.0018 6.1E-08 57.5 9.9 87 177-270 60-151 (349)
75 3n70_A Transport activator; si 97.2 0.00032 1.1E-08 54.0 4.4 45 158-202 2-48 (145)
76 1v5w_A DMC1, meiotic recombina 97.2 0.0025 8.6E-08 56.4 10.8 93 177-270 121-231 (343)
77 3cf2_A TER ATPase, transitiona 97.2 0.00064 2.2E-08 66.7 7.4 48 156-203 203-263 (806)
78 2i1q_A DNA repair and recombin 97.2 0.0014 4.7E-08 57.4 8.9 93 177-270 97-216 (322)
79 2gno_A DNA polymerase III, gam 97.1 0.0018 6.1E-08 56.4 9.2 71 162-234 2-75 (305)
80 1sxj_E Activator 1 40 kDa subu 97.1 0.00033 1.1E-08 62.0 4.6 49 154-202 11-60 (354)
81 2px0_A Flagellar biosynthesis 97.1 0.0031 1.1E-07 54.6 10.5 28 177-204 104-131 (296)
82 1u94_A RECA protein, recombina 97.0 0.0032 1.1E-07 56.0 9.5 87 177-270 62-153 (356)
83 1rz3_A Hypothetical protein rb 97.0 0.0011 3.9E-08 53.8 5.9 42 162-203 3-47 (201)
84 1ypw_A Transitional endoplasmi 97.0 0.00076 2.6E-08 66.6 5.7 48 156-203 203-263 (806)
85 1in4_A RUVB, holliday junction 97.0 0.00078 2.7E-08 59.4 5.2 50 154-203 22-76 (334)
86 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0041 1.4E-07 51.1 9.3 88 177-269 22-134 (235)
87 3c8u_A Fructokinase; YP_612366 96.9 0.0012 4.1E-08 53.9 5.7 40 164-203 6-47 (208)
88 1ofh_A ATP-dependent HSL prote 96.9 0.001 3.6E-08 57.3 5.2 47 157-203 15-75 (310)
89 1a5t_A Delta prime, HOLB; zinc 96.9 0.0052 1.8E-07 54.1 9.8 42 162-203 7-49 (334)
90 3ice_A Transcription terminati 96.9 0.00085 2.9E-08 60.1 4.6 108 168-280 163-284 (422)
91 3bh0_A DNAB-like replicative h 96.8 0.0067 2.3E-07 52.9 10.0 51 177-231 67-117 (315)
92 3co5_A Putative two-component 96.8 0.00036 1.2E-08 53.6 1.6 44 158-201 5-50 (143)
93 4a74_A DNA repair and recombin 96.8 0.0075 2.6E-07 49.4 9.8 93 177-270 24-137 (231)
94 3m6a_A ATP-dependent protease 96.8 0.0047 1.6E-07 58.2 9.1 47 157-203 81-133 (543)
95 3lda_A DNA repair protein RAD5 96.7 0.013 4.3E-07 53.0 11.3 92 177-269 177-284 (400)
96 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0025 8.6E-08 59.3 6.9 50 154-203 28-89 (499)
97 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.7E-08 52.0 3.7 25 179-203 2-26 (173)
98 1qhx_A CPT, protein (chloramph 96.7 0.001 3.6E-08 52.5 3.6 25 179-203 4-28 (178)
99 3vaa_A Shikimate kinase, SK; s 96.6 0.0012 4.2E-08 53.4 3.7 27 177-203 24-50 (199)
100 1zp6_A Hypothetical protein AT 96.6 0.0013 4.5E-08 52.6 3.8 25 177-201 8-32 (191)
101 3sr0_A Adenylate kinase; phosp 96.6 0.0042 1.4E-07 50.8 6.9 25 179-203 1-25 (206)
102 2r62_A Cell division protease 96.6 0.00085 2.9E-08 56.9 2.7 25 179-203 45-69 (268)
103 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0075 2.6E-07 55.4 9.1 100 170-270 142-257 (473)
104 3uie_A Adenylyl-sulfate kinase 96.6 0.0016 5.4E-08 52.8 4.2 29 175-203 22-50 (200)
105 1fx0_B ATP synthase beta chain 96.6 0.012 4.2E-07 54.1 10.4 101 169-270 155-278 (498)
106 2bjv_A PSP operon transcriptio 96.6 0.0016 5.4E-08 55.2 4.2 62 156-219 5-68 (265)
107 1kag_A SKI, shikimate kinase I 96.6 0.0012 3.9E-08 52.0 3.2 25 179-203 5-29 (173)
108 4eun_A Thermoresistant glucoki 96.6 0.0016 5.5E-08 52.8 4.0 27 176-202 27-53 (200)
109 1g8p_A Magnesium-chelatase 38 96.6 0.0014 4.6E-08 57.8 3.8 50 154-203 21-70 (350)
110 3trf_A Shikimate kinase, SK; a 96.6 0.0016 5.3E-08 51.9 3.7 26 178-203 5-30 (185)
111 3dm5_A SRP54, signal recogniti 96.6 0.027 9.1E-07 51.4 12.3 28 177-204 99-126 (443)
112 2hf9_A Probable hydrogenase ni 96.5 0.0031 1.1E-07 51.8 5.6 39 165-203 25-63 (226)
113 1pzn_A RAD51, DNA repair and r 96.5 0.0099 3.4E-07 52.7 9.2 93 177-270 130-243 (349)
114 1nks_A Adenylate kinase; therm 96.5 0.0017 5.9E-08 51.7 3.9 26 179-204 2-27 (194)
115 2ck3_D ATP synthase subunit be 96.5 0.023 7.8E-07 52.1 11.7 108 168-276 142-272 (482)
116 1kgd_A CASK, peripheral plasma 96.5 0.0015 5.2E-08 52.0 3.4 25 178-202 5-29 (180)
117 3kl4_A SRP54, signal recogniti 96.5 0.034 1.2E-06 50.6 12.7 28 177-204 96-123 (433)
118 2ffh_A Protein (FFH); SRP54, s 96.5 0.012 4.3E-07 53.4 9.8 28 177-204 97-124 (425)
119 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0041 1.4E-07 55.0 6.3 44 161-204 3-50 (359)
120 1ly1_A Polynucleotide kinase; 96.5 0.0016 5.5E-08 51.4 3.4 22 179-200 3-24 (181)
121 2wsm_A Hydrogenase expression/ 96.5 0.0025 8.4E-08 52.2 4.6 42 162-203 14-55 (221)
122 4a1f_A DNAB helicase, replicat 96.5 0.02 6.9E-07 50.4 10.7 89 177-269 45-167 (338)
123 2dr3_A UPF0273 protein PH0284; 96.5 0.016 5.5E-07 47.9 9.6 89 177-270 22-140 (247)
124 1kht_A Adenylate kinase; phosp 96.5 0.002 6.9E-08 51.3 3.8 25 179-203 4-28 (192)
125 2jaq_A Deoxyguanosine kinase; 96.5 0.0019 6.4E-08 52.1 3.6 24 180-203 2-25 (205)
126 2c9o_A RUVB-like 1; hexameric 96.4 0.0035 1.2E-07 57.7 5.8 49 156-204 36-89 (456)
127 1zuh_A Shikimate kinase; alpha 96.4 0.0021 7.2E-08 50.4 3.7 27 177-203 6-32 (168)
128 3t61_A Gluconokinase; PSI-biol 96.4 0.0018 6E-08 52.5 3.3 26 178-203 18-43 (202)
129 1vma_A Cell division protein F 96.4 0.022 7.6E-07 49.4 10.4 28 177-204 103-130 (306)
130 2rhm_A Putative kinase; P-loop 96.4 0.0025 8.7E-08 50.9 4.1 26 178-203 5-30 (193)
131 1ixz_A ATP-dependent metallopr 96.4 0.0053 1.8E-07 51.5 6.2 23 181-203 52-74 (254)
132 1via_A Shikimate kinase; struc 96.4 0.002 7E-08 50.8 3.3 25 179-203 5-29 (175)
133 3iij_A Coilin-interacting nucl 96.4 0.0022 7.6E-08 50.8 3.5 26 178-203 11-36 (180)
134 3e70_C DPA, signal recognition 96.4 0.055 1.9E-06 47.4 12.8 29 176-204 127-155 (328)
135 1j8m_F SRP54, signal recogniti 96.4 0.042 1.4E-06 47.4 11.9 27 178-204 98-124 (297)
136 3tr0_A Guanylate kinase, GMP k 96.3 0.0022 7.4E-08 51.9 3.4 25 178-202 7-31 (205)
137 1knq_A Gluconate kinase; ALFA/ 96.3 0.0025 8.6E-08 50.2 3.7 25 178-202 8-32 (175)
138 1odf_A YGR205W, hypothetical 3 96.3 0.0049 1.7E-07 53.2 5.5 54 176-229 29-83 (290)
139 1ye8_A Protein THEP1, hypothet 96.3 0.0029 1E-07 50.5 3.9 25 180-204 2-26 (178)
140 2c95_A Adenylate kinase 1; tra 96.3 0.0032 1.1E-07 50.4 4.1 27 177-203 8-34 (196)
141 2r44_A Uncharacterized protein 96.3 0.0029 9.9E-08 55.4 4.1 45 157-203 27-71 (331)
142 2if2_A Dephospho-COA kinase; a 96.3 0.0026 8.9E-08 51.5 3.6 22 179-200 2-23 (204)
143 2ze6_A Isopentenyl transferase 96.3 0.0026 9E-08 53.7 3.7 25 179-203 2-26 (253)
144 2qor_A Guanylate kinase; phosp 96.3 0.0025 8.4E-08 51.8 3.4 26 177-202 11-36 (204)
145 1uf9_A TT1252 protein; P-loop, 96.3 0.003 1E-07 50.8 3.9 26 176-201 6-31 (203)
146 1cke_A CK, MSSA, protein (cyti 96.3 0.0028 9.6E-08 52.1 3.7 24 179-202 6-29 (227)
147 1y63_A LMAJ004144AAA protein; 96.3 0.003 1E-07 50.4 3.8 25 177-201 9-33 (184)
148 2j41_A Guanylate kinase; GMP, 96.3 0.0028 9.7E-08 51.2 3.7 25 178-202 6-30 (207)
149 2iyv_A Shikimate kinase, SK; t 96.3 0.0024 8.2E-08 50.8 3.2 25 179-203 3-27 (184)
150 3asz_A Uridine kinase; cytidin 96.2 0.003 1E-07 51.4 3.8 27 177-203 5-31 (211)
151 2bdt_A BH3686; alpha-beta prot 96.2 0.0026 9.1E-08 50.8 3.4 22 179-200 3-24 (189)
152 2j37_W Signal recognition part 96.2 0.075 2.6E-06 49.3 13.6 28 177-204 100-127 (504)
153 1iy2_A ATP-dependent metallopr 96.2 0.0073 2.5E-07 51.5 6.3 50 154-203 37-98 (278)
154 2yvu_A Probable adenylyl-sulfa 96.2 0.0035 1.2E-07 50.0 4.0 28 177-204 12-39 (186)
155 1ojl_A Transcriptional regulat 96.2 0.0032 1.1E-07 54.7 4.1 45 158-202 3-49 (304)
156 2pt5_A Shikimate kinase, SK; a 96.2 0.0032 1.1E-07 49.1 3.7 25 179-203 1-25 (168)
157 2bwj_A Adenylate kinase 5; pho 96.2 0.0034 1.1E-07 50.4 3.9 26 178-203 12-37 (199)
158 3a00_A Guanylate kinase, GMP k 96.2 0.0023 7.9E-08 51.2 2.9 25 179-203 2-26 (186)
159 3cm0_A Adenylate kinase; ATP-b 96.2 0.0032 1.1E-07 50.0 3.7 26 178-203 4-29 (186)
160 1ex7_A Guanylate kinase; subst 96.2 0.0023 7.8E-08 51.5 2.8 25 179-203 2-26 (186)
161 1tev_A UMP-CMP kinase; ploop, 96.2 0.0033 1.1E-07 50.1 3.8 26 178-203 3-28 (196)
162 4gp7_A Metallophosphoesterase; 96.2 0.0023 7.9E-08 50.6 2.7 23 177-199 8-30 (171)
163 3hws_A ATP-dependent CLP prote 96.2 0.0055 1.9E-07 54.5 5.5 46 158-203 16-76 (363)
164 1e6c_A Shikimate kinase; phosp 96.2 0.0029 9.9E-08 49.6 3.3 25 179-203 3-27 (173)
165 1nn5_A Similar to deoxythymidy 96.2 0.011 3.9E-07 47.8 7.0 33 177-210 8-40 (215)
166 2b8t_A Thymidine kinase; deoxy 96.2 0.0018 6.2E-08 53.7 2.1 88 177-269 11-100 (223)
167 2plr_A DTMP kinase, probable t 96.2 0.0037 1.3E-07 50.6 4.0 27 178-204 4-30 (213)
168 3tau_A Guanylate kinase, GMP k 96.2 0.0036 1.2E-07 51.1 3.8 27 176-202 6-32 (208)
169 3fwy_A Light-independent proto 96.1 0.003 1E-07 55.2 3.5 29 176-204 46-74 (314)
170 2pbr_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 49.9 3.7 25 179-203 1-25 (195)
171 1qf9_A UMP/CMP kinase, protein 96.1 0.004 1.4E-07 49.5 3.8 26 178-203 6-31 (194)
172 1lvg_A Guanylate kinase, GMP k 96.1 0.0029 9.9E-08 51.3 3.0 25 178-202 4-28 (198)
173 2bbw_A Adenylate kinase 4, AK4 96.1 0.004 1.4E-07 52.1 4.0 27 177-203 26-52 (246)
174 3cmu_A Protein RECA, recombina 96.1 0.018 6.1E-07 61.6 9.5 85 177-268 1426-1515(2050)
175 1ukz_A Uridylate kinase; trans 96.1 0.0044 1.5E-07 50.1 4.0 27 177-203 14-40 (203)
176 1ls1_A Signal recognition part 96.1 0.028 9.5E-07 48.5 9.3 28 177-204 97-124 (295)
177 1um8_A ATP-dependent CLP prote 96.1 0.0071 2.4E-07 54.0 5.6 26 178-203 72-97 (376)
178 2wwf_A Thymidilate kinase, put 96.1 0.0048 1.7E-07 50.0 4.2 32 178-210 10-41 (212)
179 2cdn_A Adenylate kinase; phosp 96.1 0.0042 1.4E-07 50.2 3.8 27 177-203 19-45 (201)
180 2grj_A Dephospho-COA kinase; T 96.1 0.0043 1.5E-07 50.1 3.8 27 176-202 10-36 (192)
181 2vli_A Antibiotic resistance p 96.1 0.0027 9.1E-08 50.3 2.5 26 178-203 5-30 (183)
182 2qt1_A Nicotinamide riboside k 96.0 0.0043 1.5E-07 50.4 3.8 25 177-201 20-44 (207)
183 1xjc_A MOBB protein homolog; s 96.0 0.0052 1.8E-07 48.6 4.0 28 177-204 3-30 (169)
184 1gtv_A TMK, thymidylate kinase 96.0 0.0026 8.8E-08 51.8 2.4 25 179-203 1-25 (214)
185 3cf2_A TER ATPase, transitiona 96.0 0.0096 3.3E-07 58.4 6.7 94 156-270 476-582 (806)
186 4e22_A Cytidylate kinase; P-lo 96.0 0.004 1.4E-07 52.5 3.6 26 177-202 26-51 (252)
187 1znw_A Guanylate kinase, GMP k 96.0 0.0037 1.3E-07 50.9 3.3 26 177-202 19-44 (207)
188 1aky_A Adenylate kinase; ATP:A 96.0 0.0047 1.6E-07 50.7 3.9 26 178-203 4-29 (220)
189 1jjv_A Dephospho-COA kinase; P 96.0 0.004 1.4E-07 50.5 3.2 22 179-200 3-24 (206)
190 2z0h_A DTMP kinase, thymidylat 96.0 0.014 4.7E-07 46.7 6.4 25 180-204 2-26 (197)
191 3tqc_A Pantothenate kinase; bi 96.0 0.047 1.6E-06 47.7 10.2 27 177-203 91-117 (321)
192 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.005 1.7E-07 52.1 3.8 26 178-203 4-29 (260)
193 1gvn_B Zeta; postsegregational 95.9 0.0094 3.2E-07 51.3 5.6 26 177-202 32-57 (287)
194 3ney_A 55 kDa erythrocyte memb 95.9 0.0054 1.8E-07 49.8 3.8 27 177-203 18-44 (197)
195 3l0o_A Transcription terminati 95.9 0.031 1E-06 50.1 8.8 113 167-280 163-285 (427)
196 3aez_A Pantothenate kinase; tr 95.9 0.0048 1.6E-07 53.8 3.6 29 176-204 88-116 (312)
197 2r6a_A DNAB helicase, replicat 95.9 0.038 1.3E-06 50.6 9.9 90 177-269 202-324 (454)
198 1z6g_A Guanylate kinase; struc 95.9 0.0038 1.3E-07 51.4 2.8 26 177-202 22-47 (218)
199 3fb4_A Adenylate kinase; psych 95.9 0.0054 1.8E-07 50.0 3.7 24 180-203 2-25 (216)
200 2p5t_B PEZT; postsegregational 95.9 0.0078 2.7E-07 50.6 4.7 27 177-203 31-57 (253)
201 1zd8_A GTP:AMP phosphotransfer 95.8 0.0058 2E-07 50.4 3.7 26 178-203 7-32 (227)
202 1zak_A Adenylate kinase; ATP:A 95.8 0.0059 2E-07 50.2 3.7 26 178-203 5-30 (222)
203 2jeo_A Uridine-cytidine kinase 95.8 0.0062 2.1E-07 51.0 3.8 27 177-203 24-50 (245)
204 3gmt_A Adenylate kinase; ssgci 95.8 0.063 2.2E-06 44.5 9.9 27 177-203 7-33 (230)
205 3dl0_A Adenylate kinase; phosp 95.8 0.0063 2.1E-07 49.7 3.6 23 180-202 2-24 (216)
206 1rj9_A FTSY, signal recognitio 95.8 0.0062 2.1E-07 52.9 3.7 27 177-203 101-127 (304)
207 1uj2_A Uridine-cytidine kinase 95.7 0.0068 2.3E-07 51.0 3.8 27 177-203 21-47 (252)
208 3umf_A Adenylate kinase; rossm 95.7 0.0072 2.5E-07 49.8 3.9 27 177-203 28-54 (217)
209 2v54_A DTMP kinase, thymidylat 95.7 0.0067 2.3E-07 48.9 3.7 25 178-202 4-28 (204)
210 1htw_A HI0065; nucleotide-bind 95.7 0.006 2.1E-07 47.6 3.2 27 176-202 31-57 (158)
211 1m7g_A Adenylylsulfate kinase; 95.7 0.0071 2.4E-07 49.3 3.8 28 176-203 23-50 (211)
212 3k1j_A LON protease, ATP-depen 95.7 0.0073 2.5E-07 57.6 4.4 48 154-203 38-85 (604)
213 3nwj_A ATSK2; P loop, shikimat 95.7 0.006 2.1E-07 51.4 3.3 26 178-203 48-73 (250)
214 2pez_A Bifunctional 3'-phospho 95.7 0.0072 2.5E-07 47.8 3.6 27 177-203 4-30 (179)
215 1s96_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 50.2 3.4 27 177-203 15-41 (219)
216 2q6t_A DNAB replication FORK h 95.7 0.039 1.3E-06 50.4 8.9 51 177-230 199-249 (444)
217 2ehv_A Hypothetical protein PH 95.7 0.0062 2.1E-07 50.6 3.2 24 177-200 29-52 (251)
218 2f1r_A Molybdopterin-guanine d 95.6 0.0045 1.5E-07 49.0 2.1 26 179-204 3-28 (171)
219 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0076 2.6E-07 56.1 3.9 45 157-203 22-66 (500)
220 2i3b_A HCR-ntpase, human cance 95.6 0.0074 2.5E-07 48.6 3.3 25 179-203 2-26 (189)
221 3fdi_A Uncharacterized protein 95.6 0.029 9.8E-07 45.5 6.9 26 178-203 6-31 (201)
222 2onk_A Molybdate/tungstate ABC 95.6 0.0077 2.6E-07 50.4 3.5 23 177-200 24-46 (240)
223 1vht_A Dephospho-COA kinase; s 95.6 0.0083 2.8E-07 49.0 3.7 23 178-200 4-26 (218)
224 1e4v_A Adenylate kinase; trans 95.6 0.0091 3.1E-07 48.7 3.9 24 180-203 2-25 (214)
225 4eaq_A DTMP kinase, thymidylat 95.6 0.019 6.5E-07 47.6 5.8 32 177-210 25-56 (229)
226 3ake_A Cytidylate kinase; CMP 95.5 0.0092 3.1E-07 48.1 3.7 24 180-203 4-27 (208)
227 2pcj_A ABC transporter, lipopr 95.5 0.0066 2.3E-07 50.3 2.9 24 177-200 29-52 (224)
228 3be4_A Adenylate kinase; malar 95.5 0.0096 3.3E-07 48.8 3.9 25 179-203 6-30 (217)
229 1g41_A Heat shock protein HSLU 95.5 0.01 3.5E-07 54.2 4.3 47 157-203 15-75 (444)
230 1sq5_A Pantothenate kinase; P- 95.5 0.019 6.5E-07 49.8 5.9 28 176-203 78-105 (308)
231 3tif_A Uncharacterized ABC tra 95.5 0.0074 2.5E-07 50.3 3.1 24 177-200 30-53 (235)
232 3lnc_A Guanylate kinase, GMP k 95.5 0.0051 1.7E-07 50.9 2.0 25 177-201 26-51 (231)
233 1np6_A Molybdopterin-guanine d 95.5 0.011 3.7E-07 46.9 3.9 26 178-203 6-31 (174)
234 1tue_A Replication protein E1; 95.5 0.02 6.9E-07 46.6 5.4 39 165-203 44-83 (212)
235 2xb4_A Adenylate kinase; ATP-b 95.5 0.0099 3.4E-07 49.0 3.7 24 180-203 2-25 (223)
236 1q57_A DNA primase/helicase; d 95.5 0.097 3.3E-06 48.5 10.9 90 177-269 241-365 (503)
237 3r20_A Cytidylate kinase; stru 95.4 0.01 3.5E-07 49.5 3.7 26 178-203 9-34 (233)
238 2zts_A Putative uncharacterize 95.4 0.043 1.5E-06 45.3 7.7 50 177-229 29-78 (251)
239 3tlx_A Adenylate kinase 2; str 95.4 0.011 3.7E-07 49.5 3.9 28 176-203 27-54 (243)
240 3b85_A Phosphate starvation-in 95.4 0.007 2.4E-07 49.5 2.6 25 177-201 21-45 (208)
241 1ak2_A Adenylate kinase isoenz 95.4 0.012 4E-07 48.8 4.0 27 177-203 15-41 (233)
242 2f6r_A COA synthase, bifunctio 95.4 0.011 3.7E-07 50.7 3.8 24 177-200 74-97 (281)
243 2cbz_A Multidrug resistance-as 95.3 0.0078 2.7E-07 50.3 2.7 25 177-201 30-54 (237)
244 3p32_A Probable GTPase RV1496/ 95.3 0.025 8.6E-07 50.1 6.2 38 166-203 65-104 (355)
245 2d2e_A SUFC protein; ABC-ATPas 95.3 0.0097 3.3E-07 50.1 3.3 25 177-201 28-52 (250)
246 3b9q_A Chloroplast SRP recepto 95.3 0.013 4.4E-07 50.8 4.1 27 177-203 99-125 (302)
247 1b0u_A Histidine permease; ABC 95.3 0.0082 2.8E-07 51.0 2.7 24 177-200 31-54 (262)
248 3mfy_A V-type ATP synthase alp 95.3 0.051 1.7E-06 50.7 8.1 108 168-279 216-346 (588)
249 3pxi_A Negative regulator of g 95.3 0.024 8.3E-07 55.4 6.4 60 157-218 491-559 (758)
250 1ji0_A ABC transporter; ATP bi 95.2 0.0091 3.1E-07 50.0 2.7 24 177-200 31-54 (240)
251 2pze_A Cystic fibrosis transme 95.2 0.0091 3.1E-07 49.6 2.7 25 177-201 33-57 (229)
252 1a7j_A Phosphoribulokinase; tr 95.2 0.0078 2.7E-07 51.9 2.4 27 177-203 4-30 (290)
253 3lv8_A DTMP kinase, thymidylat 95.2 0.049 1.7E-06 45.4 7.2 37 178-215 27-63 (236)
254 2zu0_C Probable ATP-dependent 95.2 0.011 3.7E-07 50.3 3.2 25 177-201 45-69 (267)
255 1g6h_A High-affinity branched- 95.2 0.0092 3.1E-07 50.5 2.7 24 177-200 32-55 (257)
256 3cmu_A Protein RECA, recombina 95.2 0.059 2E-06 57.7 9.3 86 177-269 382-472 (2050)
257 2qe7_A ATP synthase subunit al 95.2 0.023 7.9E-07 52.4 5.5 105 169-277 152-274 (502)
258 3gfo_A Cobalt import ATP-bindi 95.2 0.011 3.6E-07 50.7 3.1 24 177-200 33-56 (275)
259 4g1u_C Hemin import ATP-bindin 95.1 0.011 3.7E-07 50.3 3.1 24 177-200 36-59 (266)
260 2yhs_A FTSY, cell division pro 95.1 0.029 1E-06 51.8 6.1 28 177-204 292-319 (503)
261 1sgw_A Putative ABC transporte 95.1 0.0084 2.9E-07 49.3 2.3 25 177-201 34-58 (214)
262 3d3q_A TRNA delta(2)-isopenten 95.1 0.013 4.4E-07 51.6 3.6 25 179-203 8-32 (340)
263 2ff7_A Alpha-hemolysin translo 95.1 0.0097 3.3E-07 50.0 2.7 24 177-200 34-57 (247)
264 2olj_A Amino acid ABC transpor 95.1 0.011 3.8E-07 50.2 3.1 24 177-200 49-72 (263)
265 1mv5_A LMRA, multidrug resista 95.1 0.0098 3.4E-07 49.8 2.7 24 177-200 27-50 (243)
266 3bgw_A DNAB-like replicative h 95.1 0.069 2.3E-06 48.8 8.5 50 177-230 196-245 (444)
267 2v3c_C SRP54, signal recogniti 95.1 0.013 4.6E-07 53.4 3.8 26 178-203 99-124 (432)
268 3vr4_D V-type sodium ATPase su 95.1 0.027 9.2E-07 51.4 5.6 100 169-270 141-260 (465)
269 2ghi_A Transport protein; mult 95.1 0.01 3.6E-07 50.2 2.7 24 177-200 45-68 (260)
270 2ixe_A Antigen peptide transpo 95.1 0.01 3.6E-07 50.6 2.7 24 177-200 44-67 (271)
271 1ltq_A Polynucleotide kinase; 95.1 0.013 4.5E-07 50.4 3.4 23 179-201 3-25 (301)
272 1oix_A RAS-related protein RAB 95.0 0.015 5.2E-07 46.4 3.5 25 178-202 29-53 (191)
273 3upu_A ATP-dependent DNA helic 95.0 0.055 1.9E-06 49.6 7.7 44 161-205 29-72 (459)
274 1vpl_A ABC transporter, ATP-bi 95.0 0.011 3.7E-07 50.0 2.7 24 177-200 40-63 (256)
275 3end_A Light-independent proto 95.0 0.019 6.6E-07 49.5 4.4 30 175-204 38-67 (307)
276 3cmw_A Protein RECA, recombina 95.0 0.054 1.9E-06 57.2 8.3 87 177-270 382-473 (1706)
277 4tmk_A Protein (thymidylate ki 95.0 0.062 2.1E-06 44.0 7.1 52 179-231 4-55 (213)
278 1q3t_A Cytidylate kinase; nucl 95.0 0.018 6.3E-07 47.7 4.0 27 177-203 15-41 (236)
279 2v9p_A Replication protein E1; 95.0 0.015 5.2E-07 50.4 3.5 27 176-202 124-150 (305)
280 2yz2_A Putative ABC transporte 95.0 0.012 4E-07 50.1 2.7 24 177-200 32-55 (266)
281 3crm_A TRNA delta(2)-isopenten 95.0 0.016 5.4E-07 50.7 3.6 25 179-203 6-30 (323)
282 2qi9_C Vitamin B12 import ATP- 94.9 0.012 4.1E-07 49.6 2.7 24 177-200 25-48 (249)
283 2r9v_A ATP synthase subunit al 94.9 0.052 1.8E-06 50.1 7.1 105 168-276 164-286 (515)
284 2og2_A Putative signal recogni 94.9 0.019 6.4E-07 51.1 4.1 28 177-204 156-183 (359)
285 2eyu_A Twitching motility prot 94.9 0.015 5.2E-07 49.2 3.4 28 176-203 23-50 (261)
286 1nlf_A Regulatory protein REPA 94.9 0.015 5.2E-07 49.6 3.4 27 177-203 29-55 (279)
287 2ihy_A ABC transporter, ATP-bi 94.9 0.012 4.1E-07 50.4 2.7 24 177-200 46-69 (279)
288 2nq2_C Hypothetical ABC transp 94.9 0.012 4.2E-07 49.6 2.7 25 177-201 30-54 (253)
289 1g8f_A Sulfate adenylyltransfe 94.9 0.026 9.1E-07 52.5 5.1 46 159-204 374-421 (511)
290 1cr0_A DNA primase/helicase; R 94.9 0.016 5.5E-07 49.8 3.4 39 177-216 34-72 (296)
291 2ck3_A ATP synthase subunit al 94.8 0.072 2.5E-06 49.2 7.8 109 168-276 151-281 (510)
292 3sop_A Neuronal-specific septi 94.8 0.017 5.9E-07 49.2 3.5 23 180-202 4-26 (270)
293 3vr4_A V-type sodium ATPase ca 94.8 0.1 3.4E-06 48.9 8.7 98 168-269 221-340 (600)
294 1yrb_A ATP(GTP)binding protein 94.8 0.021 7.3E-07 47.8 4.0 26 178-203 14-39 (262)
295 2f9l_A RAB11B, member RAS onco 94.8 0.017 5.8E-07 46.3 3.1 23 179-201 6-28 (199)
296 3hjn_A DTMP kinase, thymidylat 94.8 0.078 2.7E-06 42.8 7.1 85 180-268 2-91 (197)
297 2c61_A A-type ATP synthase non 94.7 0.021 7.1E-07 52.3 3.9 111 169-279 142-271 (469)
298 3ld9_A DTMP kinase, thymidylat 94.7 0.046 1.6E-06 45.1 5.7 56 176-231 19-74 (223)
299 3fvq_A Fe(3+) IONS import ATP- 94.7 0.018 6.1E-07 51.2 3.4 24 177-200 29-52 (359)
300 2ocp_A DGK, deoxyguanosine kin 94.7 0.023 7.9E-07 47.2 4.0 26 178-203 2-27 (241)
301 2ce2_X GTPase HRAS; signaling 94.7 0.02 6.9E-07 43.7 3.3 23 180-202 5-27 (166)
302 2dyk_A GTP-binding protein; GT 94.7 0.022 7.4E-07 43.5 3.5 23 179-201 2-24 (161)
303 1zu4_A FTSY; GTPase, signal re 94.7 0.027 9.2E-07 49.2 4.4 28 177-204 104-131 (320)
304 2wji_A Ferrous iron transport 94.7 0.02 6.9E-07 44.3 3.2 22 179-200 4-25 (165)
305 2pjz_A Hypothetical protein ST 94.6 0.016 5.6E-07 49.1 2.7 23 178-200 30-52 (263)
306 4edh_A DTMP kinase, thymidylat 94.6 0.082 2.8E-06 43.2 6.9 33 178-211 6-38 (213)
307 1u0j_A DNA replication protein 94.6 0.059 2E-06 45.7 6.1 38 164-201 88-127 (267)
308 1z2a_A RAS-related protein RAB 94.6 0.022 7.4E-07 43.8 3.2 24 179-202 6-29 (168)
309 2zej_A Dardarin, leucine-rich 94.5 0.018 6.3E-07 45.4 2.8 21 180-200 4-24 (184)
310 3nh6_A ATP-binding cassette SU 94.5 0.014 4.9E-07 50.6 2.3 24 177-200 79-102 (306)
311 1z47_A CYSA, putative ABC-tran 94.5 0.02 6.9E-07 50.7 3.3 24 177-200 40-63 (355)
312 1svm_A Large T antigen; AAA+ f 94.5 0.024 8.2E-07 50.7 3.8 27 176-202 167-193 (377)
313 3oaa_A ATP synthase subunit al 94.5 0.084 2.9E-06 48.7 7.4 99 169-270 152-266 (513)
314 3hdt_A Putative kinase; struct 94.5 0.062 2.1E-06 44.3 6.0 27 177-203 13-39 (223)
315 2bbs_A Cystic fibrosis transme 94.5 0.021 7.2E-07 49.2 3.2 25 177-201 63-87 (290)
316 3gqb_B V-type ATP synthase bet 94.5 0.065 2.2E-06 48.9 6.5 102 169-270 137-263 (464)
317 3zvl_A Bifunctional polynucleo 94.5 0.016 5.5E-07 52.6 2.5 27 176-202 256-282 (416)
318 3kta_A Chromosome segregation 94.5 0.025 8.5E-07 44.6 3.4 22 179-200 27-48 (182)
319 2vp4_A Deoxynucleoside kinase; 94.5 0.015 5.2E-07 48.0 2.2 25 177-201 19-43 (230)
320 1cp2_A CP2, nitrogenase iron p 94.4 0.033 1.1E-06 46.9 4.3 26 179-204 2-27 (269)
321 3cr8_A Sulfate adenylyltranfer 94.4 0.037 1.3E-06 52.0 4.9 27 177-203 368-394 (552)
322 3exa_A TRNA delta(2)-isopenten 94.4 0.027 9.2E-07 49.0 3.7 25 178-202 3-27 (322)
323 1zj6_A ADP-ribosylation factor 94.4 0.053 1.8E-06 42.7 5.2 34 167-201 6-39 (187)
324 2it1_A 362AA long hypothetical 94.4 0.022 7.6E-07 50.6 3.2 24 177-200 28-51 (362)
325 2yyz_A Sugar ABC transporter, 94.4 0.026 8.7E-07 50.2 3.6 24 177-200 28-51 (359)
326 3rlf_A Maltose/maltodextrin im 94.4 0.023 7.7E-07 50.9 3.2 24 177-200 28-51 (381)
327 3con_A GTPase NRAS; structural 94.4 0.024 8.3E-07 44.7 3.2 23 180-202 23-45 (190)
328 3tui_C Methionine import ATP-b 94.4 0.023 8E-07 50.5 3.2 24 177-200 53-76 (366)
329 1g29_1 MALK, maltose transport 94.3 0.023 8E-07 50.7 3.3 24 177-200 28-51 (372)
330 2wjg_A FEOB, ferrous iron tran 94.3 0.026 8.9E-07 44.4 3.2 23 179-201 8-30 (188)
331 1u8z_A RAS-related protein RAL 94.3 0.026 8.9E-07 43.2 3.2 24 179-202 5-28 (168)
332 1v43_A Sugar-binding transport 94.3 0.024 8.1E-07 50.6 3.2 24 177-200 36-59 (372)
333 3a8t_A Adenylate isopentenyltr 94.3 0.023 8E-07 49.9 3.1 26 177-202 39-64 (339)
334 1moz_A ARL1, ADP-ribosylation 94.3 0.032 1.1E-06 43.6 3.7 32 169-200 8-40 (183)
335 1fx0_A ATP synthase alpha chai 94.3 0.03 1E-06 51.7 3.9 90 177-270 162-267 (507)
336 2ged_A SR-beta, signal recogni 94.3 0.026 8.9E-07 44.7 3.2 25 177-201 47-71 (193)
337 3foz_A TRNA delta(2)-isopenten 94.3 0.03 1E-06 48.6 3.6 26 177-202 9-34 (316)
338 1c1y_A RAS-related protein RAP 94.2 0.029 9.8E-07 43.0 3.2 22 180-201 5-26 (167)
339 1lw7_A Transcriptional regulat 94.2 0.024 8.4E-07 50.3 3.1 26 178-203 170-195 (365)
340 1r8s_A ADP-ribosylation factor 94.2 0.031 1.1E-06 42.8 3.4 22 181-202 3-24 (164)
341 1kao_A RAP2A; GTP-binding prot 94.2 0.03 1E-06 42.8 3.2 23 180-202 5-27 (167)
342 1z08_A RAS-related protein RAB 94.2 0.03 1E-06 43.1 3.2 23 179-201 7-29 (170)
343 4gzl_A RAS-related C3 botulinu 94.2 0.034 1.2E-06 44.8 3.6 32 171-202 23-54 (204)
344 3d31_A Sulfate/molybdate ABC t 94.2 0.024 8.1E-07 50.2 2.9 24 177-200 25-48 (348)
345 2nzj_A GTP-binding protein REM 94.2 0.028 9.5E-07 43.5 3.0 23 179-201 5-27 (175)
346 2h92_A Cytidylate kinase; ross 94.1 0.028 9.7E-07 45.7 3.2 25 179-203 4-28 (219)
347 2gj8_A MNME, tRNA modification 94.1 0.029 1E-06 43.8 3.1 23 179-201 5-27 (172)
348 1nij_A Hypothetical protein YJ 94.1 0.025 8.7E-07 49.3 3.0 25 177-201 3-27 (318)
349 3jvv_A Twitching mobility prot 94.1 0.04 1.4E-06 48.8 4.3 28 176-203 121-148 (356)
350 1ek0_A Protein (GTP-binding pr 94.1 0.03 1E-06 42.9 3.2 23 180-202 5-27 (170)
351 1tq4_A IIGP1, interferon-induc 94.1 0.042 1.4E-06 49.7 4.5 24 177-200 68-91 (413)
352 1fzq_A ADP-ribosylation factor 94.1 0.044 1.5E-06 43.1 4.1 25 177-201 15-39 (181)
353 2afh_E Nitrogenase iron protei 94.1 0.043 1.5E-06 46.8 4.3 27 178-204 2-28 (289)
354 1m7b_A RND3/RHOE small GTP-bin 94.1 0.033 1.1E-06 43.9 3.3 23 179-201 8-30 (184)
355 1z0j_A RAB-22, RAS-related pro 94.1 0.032 1.1E-06 42.9 3.2 23 180-202 8-30 (170)
356 2fn4_A P23, RAS-related protei 94.1 0.033 1.1E-06 43.3 3.3 24 178-201 9-32 (181)
357 3q72_A GTP-binding protein RAD 94.1 0.03 1E-06 43.0 3.0 21 180-200 4-24 (166)
358 3gd7_A Fusion complex of cysti 94.0 0.031 1E-06 50.3 3.4 24 177-200 46-69 (390)
359 1qvr_A CLPB protein; coiled co 94.0 0.033 1.1E-06 55.3 4.0 47 157-203 558-613 (854)
360 1r6b_X CLPA protein; AAA+, N-t 94.0 0.066 2.3E-06 52.3 6.1 57 157-218 458-523 (758)
361 1ky3_A GTP-binding protein YPT 94.0 0.032 1.1E-06 43.4 3.2 26 177-202 7-32 (182)
362 2erx_A GTP-binding protein DI- 94.0 0.031 1.1E-06 43.0 3.0 22 180-201 5-26 (172)
363 1oxx_K GLCV, glucose, ABC tran 94.0 0.018 6.3E-07 51.0 1.8 24 177-200 30-53 (353)
364 3t1o_A Gliding protein MGLA; G 94.0 0.033 1.1E-06 44.0 3.2 23 179-201 15-37 (198)
365 1g16_A RAS-related protein SEC 94.0 0.035 1.2E-06 42.6 3.3 22 180-201 5-26 (170)
366 3q85_A GTP-binding protein REM 94.0 0.032 1.1E-06 43.0 3.0 20 180-199 4-23 (169)
367 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.034 1.1E-06 43.2 3.2 23 179-201 8-30 (177)
368 1f6b_A SAR1; gtpases, N-termin 94.0 0.054 1.9E-06 43.3 4.5 24 177-200 24-47 (198)
369 2www_A Methylmalonic aciduria 94.0 0.072 2.5E-06 47.0 5.6 26 177-202 73-98 (349)
370 1r2q_A RAS-related protein RAB 94.0 0.034 1.2E-06 42.6 3.2 22 180-201 8-29 (170)
371 1nrj_B SR-beta, signal recogni 93.9 0.042 1.4E-06 44.5 3.8 26 177-202 11-36 (218)
372 2yv5_A YJEQ protein; hydrolase 93.9 0.052 1.8E-06 46.9 4.5 33 166-202 156-188 (302)
373 3ihw_A Centg3; RAS, centaurin, 93.9 0.035 1.2E-06 43.9 3.2 25 178-202 20-44 (184)
374 2e87_A Hypothetical protein PH 93.9 1 3.6E-05 39.5 13.1 25 177-201 166-190 (357)
375 1z0f_A RAB14, member RAS oncog 93.9 0.036 1.2E-06 42.9 3.2 25 178-202 15-39 (179)
376 3cmw_A Protein RECA, recombina 93.9 0.19 6.6E-06 53.1 9.3 86 177-269 1430-1520(1706)
377 1p9r_A General secretion pathw 93.8 0.055 1.9E-06 49.1 4.7 35 168-203 158-192 (418)
378 3v9p_A DTMP kinase, thymidylat 93.8 0.087 3E-06 43.6 5.6 28 177-204 24-51 (227)
379 1svi_A GTP-binding protein YSX 93.8 0.044 1.5E-06 43.3 3.7 25 177-201 22-46 (195)
380 1m2o_B GTP-binding protein SAR 93.8 0.039 1.3E-06 43.8 3.3 24 178-201 23-46 (190)
381 1upt_A ARL1, ADP-ribosylation 93.8 0.038 1.3E-06 42.5 3.2 24 178-201 7-30 (171)
382 2qnr_A Septin-2, protein NEDD5 93.8 0.032 1.1E-06 48.2 3.0 20 181-200 21-40 (301)
383 2bme_A RAB4A, RAS-related prot 93.8 0.04 1.4E-06 43.2 3.3 24 179-202 11-34 (186)
384 2axn_A 6-phosphofructo-2-kinas 93.8 0.045 1.5E-06 51.1 4.1 28 177-204 34-61 (520)
385 2lkc_A Translation initiation 93.7 0.048 1.6E-06 42.3 3.7 25 177-201 7-31 (178)
386 2ewv_A Twitching motility prot 93.7 0.045 1.5E-06 48.9 3.9 28 176-203 134-161 (372)
387 2orw_A Thymidine kinase; TMTK, 93.7 0.061 2.1E-06 42.9 4.3 25 179-203 4-28 (184)
388 3eph_A TRNA isopentenyltransfe 93.7 0.044 1.5E-06 49.3 3.8 25 179-203 3-27 (409)
389 4dsu_A GTPase KRAS, isoform 2B 93.7 0.039 1.3E-06 43.3 3.2 23 180-202 6-28 (189)
390 3llm_A ATP-dependent RNA helic 93.7 0.17 5.9E-06 41.6 7.3 91 178-270 76-188 (235)
391 2gza_A Type IV secretion syste 93.7 0.032 1.1E-06 49.6 2.9 100 177-285 174-278 (361)
392 3dz8_A RAS-related protein RAB 93.7 0.044 1.5E-06 43.4 3.5 24 179-202 24-47 (191)
393 2y8e_A RAB-protein 6, GH09086P 93.7 0.042 1.4E-06 42.6 3.3 22 180-201 16-37 (179)
394 3kkq_A RAS-related protein M-R 93.7 0.04 1.4E-06 43.1 3.2 24 178-201 18-41 (183)
395 1pui_A ENGB, probable GTP-bind 93.7 0.022 7.5E-07 45.9 1.6 25 176-200 24-48 (210)
396 3bc1_A RAS-related protein RAB 93.7 0.04 1.4E-06 43.3 3.2 23 179-201 12-34 (195)
397 3kjh_A CO dehydrogenase/acetyl 93.7 0.083 2.8E-06 43.6 5.2 26 180-205 2-27 (254)
398 3c5c_A RAS-like protein 12; GD 93.7 0.041 1.4E-06 43.6 3.2 25 178-202 21-45 (187)
399 2cxx_A Probable GTP-binding pr 93.7 0.041 1.4E-06 43.2 3.1 22 180-201 3-24 (190)
400 4akg_A Glutathione S-transfera 93.7 0.15 5.3E-06 56.2 8.5 69 179-268 1268-1346(2695)
401 2qm8_A GTPase/ATPase; G protei 93.7 0.044 1.5E-06 48.2 3.6 28 176-203 53-80 (337)
402 3tw8_B RAS-related protein RAB 93.6 0.037 1.3E-06 43.0 2.8 24 178-201 9-32 (181)
403 2a9k_A RAS-related protein RAL 93.6 0.042 1.4E-06 42.9 3.2 25 178-202 18-42 (187)
404 2obl_A ESCN; ATPase, hydrolase 93.6 0.044 1.5E-06 48.4 3.6 28 176-203 69-96 (347)
405 3t5g_A GTP-binding protein RHE 93.6 0.045 1.5E-06 42.7 3.3 25 178-202 6-30 (181)
406 2oil_A CATX-8, RAS-related pro 93.6 0.042 1.4E-06 43.5 3.1 24 179-202 26-49 (193)
407 2efe_B Small GTP-binding prote 93.6 0.043 1.5E-06 42.7 3.2 24 179-202 13-36 (181)
408 2atv_A RERG, RAS-like estrogen 93.6 0.051 1.7E-06 43.2 3.6 25 177-201 27-51 (196)
409 2hxs_A RAB-26, RAS-related pro 93.6 0.035 1.2E-06 43.1 2.6 23 179-201 7-29 (178)
410 3pqc_A Probable GTP-binding pr 93.6 0.054 1.9E-06 42.6 3.8 26 177-202 22-47 (195)
411 2r8r_A Sensor protein; KDPD, P 93.5 0.063 2.1E-06 44.4 4.1 31 180-211 8-38 (228)
412 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.045 1.5E-06 42.8 3.2 22 180-201 7-28 (186)
413 3bwd_D RAC-like GTP-binding pr 93.5 0.046 1.6E-06 42.6 3.2 24 178-201 8-31 (182)
414 2g6b_A RAS-related protein RAB 93.5 0.046 1.6E-06 42.5 3.2 24 179-202 11-34 (180)
415 2fg5_A RAB-22B, RAS-related pr 93.5 0.048 1.6E-06 43.3 3.3 25 178-202 23-47 (192)
416 2bov_A RAla, RAS-related prote 93.5 0.046 1.6E-06 43.6 3.2 25 178-202 14-38 (206)
417 2iwr_A Centaurin gamma 1; ANK 93.4 0.034 1.2E-06 43.3 2.4 22 180-201 9-30 (178)
418 3oes_A GTPase rhebl1; small GT 93.4 0.049 1.7E-06 43.6 3.3 26 177-202 23-48 (201)
419 3clv_A RAB5 protein, putative; 93.4 0.047 1.6E-06 43.2 3.2 24 178-201 7-30 (208)
420 1vg8_A RAS-related protein RAB 93.4 0.047 1.6E-06 43.6 3.2 25 178-202 8-32 (207)
421 3io3_A DEHA2D07832P; chaperone 93.4 0.055 1.9E-06 47.8 3.8 31 173-203 13-43 (348)
422 3cbq_A GTP-binding protein REM 93.4 0.034 1.2E-06 44.4 2.3 22 178-199 23-44 (195)
423 1p5z_B DCK, deoxycytidine kina 93.4 0.023 7.8E-07 48.0 1.3 26 177-202 23-48 (263)
424 2ew1_A RAS-related protein RAB 93.4 0.051 1.7E-06 43.8 3.3 24 178-201 26-49 (201)
425 2gf0_A GTP-binding protein DI- 93.4 0.051 1.7E-06 43.1 3.3 24 178-201 8-31 (199)
426 1gwn_A RHO-related GTP-binding 93.4 0.05 1.7E-06 43.9 3.3 24 178-201 28-51 (205)
427 2p67_A LAO/AO transport system 93.4 0.054 1.9E-06 47.6 3.7 28 176-203 54-81 (341)
428 1zd9_A ADP-ribosylation factor 93.3 0.05 1.7E-06 43.0 3.2 24 179-202 23-46 (188)
429 2cjw_A GTP-binding protein GEM 93.3 0.054 1.8E-06 43.2 3.4 22 179-200 7-28 (192)
430 1bif_A 6-phosphofructo-2-kinas 93.3 0.053 1.8E-06 49.9 3.7 27 177-203 38-64 (469)
431 3ch4_B Pmkase, phosphomevalona 93.3 0.072 2.5E-06 43.2 4.1 27 176-202 9-35 (202)
432 1u0l_A Probable GTPase ENGC; p 93.3 0.077 2.6E-06 45.8 4.5 33 166-201 160-192 (301)
433 2b6h_A ADP-ribosylation factor 93.3 0.042 1.4E-06 43.7 2.6 26 175-200 26-51 (192)
434 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.045 1.5E-06 50.3 3.1 25 177-201 137-161 (460)
435 3tkl_A RAS-related protein RAB 93.3 0.052 1.8E-06 42.9 3.2 24 179-202 17-40 (196)
436 2fh5_B SR-beta, signal recogni 93.2 0.051 1.8E-06 43.8 3.2 26 177-202 6-31 (214)
437 3reg_A RHO-like small GTPase; 93.2 0.053 1.8E-06 43.0 3.2 25 178-202 23-47 (194)
438 2gf9_A RAS-related protein RAB 93.2 0.054 1.8E-06 42.7 3.2 24 179-202 23-46 (189)
439 3f9v_A Minichromosome maintena 93.2 0.025 8.4E-07 53.8 1.3 23 180-202 329-351 (595)
440 2a5j_A RAS-related protein RAB 93.2 0.054 1.8E-06 42.9 3.1 22 180-201 23-44 (191)
441 2pt7_A CAG-ALFA; ATPase, prote 93.2 0.035 1.2E-06 48.7 2.1 25 178-202 171-195 (330)
442 1z06_A RAS-related protein RAB 93.1 0.055 1.9E-06 42.7 3.2 25 178-202 20-44 (189)
443 3k53_A Ferrous iron transport 93.1 0.06 2.1E-06 45.6 3.6 24 178-201 3-26 (271)
444 1ypw_A Transitional endoplasmi 93.1 0.034 1.2E-06 54.8 2.2 48 156-203 476-536 (806)
445 3llu_A RAS-related GTP-binding 93.1 0.046 1.6E-06 43.6 2.6 23 178-200 20-42 (196)
446 2rcn_A Probable GTPase ENGC; Y 93.1 0.054 1.8E-06 48.0 3.2 24 178-201 215-238 (358)
447 3iqw_A Tail-anchored protein t 93.1 0.17 5.8E-06 44.4 6.4 32 173-204 11-42 (334)
448 2dpy_A FLII, flagellum-specifi 93.1 0.059 2E-06 49.2 3.6 28 176-203 155-182 (438)
449 2bcg_Y Protein YP2, GTP-bindin 93.1 0.06 2.1E-06 43.1 3.3 24 179-202 9-32 (206)
450 1x3s_A RAS-related protein RAB 93.1 0.058 2E-06 42.5 3.2 24 179-202 16-39 (195)
451 3lxx_A GTPase IMAP family memb 93.0 0.053 1.8E-06 44.9 3.0 25 177-201 28-52 (239)
452 2p5s_A RAS and EF-hand domain 93.0 0.058 2E-06 43.0 3.1 25 177-201 27-51 (199)
453 2qag_B Septin-6, protein NEDD5 93.0 0.047 1.6E-06 49.6 2.8 20 181-200 45-64 (427)
454 1m8p_A Sulfate adenylyltransfe 93.0 0.081 2.8E-06 50.0 4.5 28 177-204 395-422 (573)
455 2fv8_A H6, RHO-related GTP-bin 93.0 0.062 2.1E-06 43.2 3.3 24 178-201 25-48 (207)
456 1ega_A Protein (GTP-binding pr 93.0 0.056 1.9E-06 46.7 3.2 24 178-201 8-31 (301)
457 1zbd_A Rabphilin-3A; G protein 93.0 0.056 1.9E-06 43.1 3.0 24 179-202 9-32 (203)
458 2gks_A Bifunctional SAT/APS ki 93.0 0.12 4.1E-06 48.6 5.6 44 161-204 353-398 (546)
459 4dzz_A Plasmid partitioning pr 92.9 0.074 2.5E-06 42.5 3.7 26 179-204 2-28 (206)
460 1ksh_A ARF-like protein 2; sma 92.9 0.066 2.3E-06 42.0 3.3 27 176-202 16-42 (186)
461 4hlc_A DTMP kinase, thymidylat 92.9 0.12 4.1E-06 41.9 4.9 31 179-211 3-33 (205)
462 2o52_A RAS-related protein RAB 92.9 0.062 2.1E-06 43.0 3.1 24 178-201 25-48 (200)
463 2atx_A Small GTP binding prote 92.9 0.068 2.3E-06 42.3 3.3 23 179-201 19-41 (194)
464 3cwq_A Para family chromosome 92.8 0.18 6.1E-06 40.9 5.9 43 179-224 1-44 (209)
465 1x6v_B Bifunctional 3'-phospho 92.8 0.074 2.5E-06 50.7 4.0 27 177-203 51-77 (630)
466 3gqb_A V-type ATP synthase alp 92.8 0.09 3.1E-06 49.0 4.4 98 169-270 211-330 (578)
467 3tmk_A Thymidylate kinase; pho 92.8 0.089 3E-06 43.2 3.9 27 178-204 5-31 (216)
468 2qmh_A HPR kinase/phosphorylas 92.8 0.054 1.9E-06 43.8 2.6 25 178-202 34-58 (205)
469 3cph_A RAS-related protein SEC 92.8 0.067 2.3E-06 42.9 3.2 24 178-201 20-43 (213)
470 2gco_A H9, RHO-related GTP-bin 92.8 0.071 2.4E-06 42.6 3.3 25 178-202 25-49 (201)
471 3euj_A Chromosome partition pr 92.7 0.062 2.1E-06 49.6 3.2 24 179-202 30-53 (483)
472 2hup_A RAS-related protein RAB 92.7 0.071 2.4E-06 42.7 3.3 24 178-201 29-52 (201)
473 2h17_A ADP-ribosylation factor 92.7 0.065 2.2E-06 42.0 3.0 23 179-201 22-44 (181)
474 2q3h_A RAS homolog gene family 92.7 0.065 2.2E-06 42.7 3.0 24 178-201 20-43 (201)
475 4bas_A ADP-ribosylation factor 92.7 0.061 2.1E-06 42.6 2.8 25 177-201 16-40 (199)
476 2j1l_A RHO-related GTP-binding 92.7 0.068 2.3E-06 43.3 3.1 24 178-201 34-57 (214)
477 2j0v_A RAC-like GTP-binding pr 92.6 0.074 2.5E-06 42.8 3.3 24 179-202 10-33 (212)
478 1yqt_A RNAse L inhibitor; ATP- 92.6 0.063 2.2E-06 50.3 3.2 26 177-202 311-336 (538)
479 1yqt_A RNAse L inhibitor; ATP- 92.6 0.064 2.2E-06 50.3 3.2 24 177-200 46-69 (538)
480 1mky_A Probable GTP-binding pr 92.6 0.13 4.5E-06 46.8 5.2 42 161-202 152-204 (439)
481 2g3y_A GTP-binding protein GEM 92.6 0.069 2.4E-06 43.5 3.0 22 178-199 37-58 (211)
482 2il1_A RAB12; G-protein, GDP, 92.5 0.066 2.3E-06 42.5 2.8 24 179-202 27-50 (192)
483 3ozx_A RNAse L inhibitor; ATP 92.5 0.057 1.9E-06 50.7 2.7 25 177-201 293-317 (538)
484 2fu5_C RAS-related protein RAB 92.5 0.04 1.4E-06 43.1 1.5 23 179-201 9-31 (183)
485 3q3j_B RHO-related GTP-binding 92.4 0.077 2.6E-06 43.0 3.2 24 179-202 28-51 (214)
486 2aka_B Dynamin-1; fusion prote 92.4 0.17 5.9E-06 43.0 5.6 37 165-201 7-49 (299)
487 2qu8_A Putative nucleolar GTP- 92.4 0.088 3E-06 43.1 3.5 25 177-201 28-52 (228)
488 2xtp_A GTPase IMAP family memb 92.3 0.078 2.7E-06 44.4 3.1 25 177-201 21-45 (260)
489 2h57_A ADP-ribosylation factor 92.3 0.065 2.2E-06 42.3 2.4 25 178-202 21-45 (190)
490 1f2t_A RAD50 ABC-ATPase; DNA d 92.3 0.093 3.2E-06 40.2 3.2 24 178-201 23-46 (149)
491 3ozx_A RNAse L inhibitor; ATP 92.2 0.066 2.2E-06 50.2 2.7 24 177-200 24-47 (538)
492 3ea0_A ATPase, para family; al 92.2 0.12 4.1E-06 42.6 4.1 28 177-204 3-31 (245)
493 1t9h_A YLOQ, probable GTPase E 92.1 0.039 1.3E-06 47.9 1.0 23 178-200 173-195 (307)
494 3j16_B RLI1P; ribosome recycli 92.1 0.08 2.7E-06 50.4 3.2 24 177-200 102-125 (608)
495 3bk7_A ABC transporter ATP-bin 92.1 0.08 2.7E-06 50.4 3.2 26 177-202 381-406 (607)
496 2f7s_A C25KG, RAS-related prot 92.1 0.083 2.8E-06 42.6 3.0 22 179-200 26-47 (217)
497 3iby_A Ferrous iron transport 92.1 0.089 3.1E-06 44.2 3.2 23 179-201 2-24 (256)
498 3def_A T7I23.11 protein; chlor 92.1 0.17 5.8E-06 42.5 5.0 26 177-202 35-60 (262)
499 3j16_B RLI1P; ribosome recycli 92.1 0.08 2.7E-06 50.4 3.2 23 179-201 379-401 (608)
500 3b5x_A Lipid A export ATP-bind 92.1 0.086 2.9E-06 49.9 3.4 25 177-201 368-392 (582)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.83 E-value=3.4e-21 Score=183.12 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHHhcCC---CccEEEEEecCCCcHHHHHHHHHH--HhhhcCCCCEEEEEEcCCCC--ChHHHHHHHHHH
Q 022670 160 DSRMKVFQDVVEALKDN---KHNIIGVYEMGGVGKTTLVKQVAK--QVMEDNLFDEVVMAELTQNL--DPQKIQDQLASD 232 (294)
Q Consensus 160 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~gG~GKTtLa~~v~~--~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~ 232 (294)
+||+.+++.|.++|... ..++|+|+||||+||||||+.+|+ +.+...+|++++|+++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999754 689999999999999999999998 56777899999999999985 899999999999
Q ss_pred hCCCCC-------CCCCHHHHHHHHHHHhcCCC-eEEEEEeCCCCcccc
Q 022670 233 LGMKFD-------LNDSIFHRAHQLCQRLKKEK-RILIILDNIWTKLEF 273 (294)
Q Consensus 233 ~~~~~~-------~~~~~~~~~~~l~~~L~~~k-r~LiVlDdvw~~~~w 273 (294)
++.... ...+.+.+...+++.|++ + ||||||||||+..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~~~ 258 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEETI 258 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHHHH
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCchhh
Confidence 976421 113456778999999998 7 999999999998754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.72 E-value=4.4e-18 Score=167.87 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE-EEEEEcCCCCChHHHHHHHHHHhCC-
Q 022670 159 FDSRMKVFQDVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE-VVMAELTQNLDPQKIQDQLASDLGM- 235 (294)
Q Consensus 159 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~~~~- 235 (294)
.+||+.+++.|.++|.. +..++|+|+||||+||||||+.+|++.++..+|++ ++|+++++.++...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999875 56899999999999999999999998766677986 9999999999998888888775321
Q ss_pred --CCCC--------CCCHHHHHHHHHHHh---cCCCeEEEEEeCCCCccccccc
Q 022670 236 --KFDL--------NDSIFHRAHQLCQRL---KKEKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 236 --~~~~--------~~~~~~~~~~l~~~L---~~~kr~LiVlDdvw~~~~w~~l 276 (294)
.... +.+.+++...+++.| .+ ||+||||||||+.+.|+.+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~-KRvLLVLDDVwd~eqLe~f 262 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAF 262 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTT-SSCEEEEESCCCHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeCcChHHHHHhh
Confidence 1110 012345566777766 56 9999999999999988764
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.66 E-value=1.6e-16 Score=163.47 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=96.8
Q ss_pred CccccccHHHHHHHHHHHhc--CCCccEEEEEecCCCcHHHHHHHHHHHhhh-cCCC-CEEEEEEcCCCCC--hHHHHHH
Q 022670 155 DFAAFDSRMKVFQDVVEALK--DNKHNIIGVYEMGGVGKTTLVKQVAKQVME-DNLF-DEVVMAELTQNLD--PQKIQDQ 228 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~vs~~~~--~~~~~~~ 228 (294)
+...|+||+.+++.|.++|. +++.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 35679999999999999986 357899999999999999999999987543 3445 6788999998644 3444677
Q ss_pred HHHHhCCCC----CCCCCHHHHHHHHHHHhcCCC--eEEEEEeCCCCccccccc
Q 022670 229 LASDLGMKF----DLNDSIFHRAHQLCQRLKKEK--RILIILDNIWTKLEFDKI 276 (294)
Q Consensus 229 i~~~~~~~~----~~~~~~~~~~~~l~~~L~~~k--r~LiVlDdvw~~~~w~~l 276 (294)
++.++.... ....+.+.+...++..|.+ + ||||||||||+..+|+.+
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LlvlDd~~~~~~~~~~ 254 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKAF 254 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS-SSCSCEEEEESCCCHHHHTTT
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhc-cCCCEEEEEecCCCHHHHHhh
Confidence 777775532 2235678888999999987 6 999999999999888875
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=142.87 Aligned_cols=120 Identities=19% Similarity=0.309 Sum_probs=90.8
Q ss_pred ccccccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhh-cCCC-CEEEEEEcCCCCChHHHHHHH--
Q 022670 156 FAAFDSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVME-DNLF-DEVVMAELTQNLDPQKIQDQL-- 229 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~vs~~~~~~~~~~~i-- 229 (294)
...++||+.+++.|.++|.. +..++|+|+||||+||||||..+|++... ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 45799999999999999873 46889999999999999999999987644 4668 58999999876 344444444
Q ss_pred -HHHhCCC----CCCCCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCccccccc
Q 022670 230 -ASDLGMK----FDLNDSIFHRAHQLCQRLKK-EKRILIILDNIWTKLEFDKI 276 (294)
Q Consensus 230 -~~~~~~~----~~~~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~~~w~~l 276 (294)
+..++.. .....+.+.+...+...|.+ .+++||||||+|+...++.+
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l 254 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF 254 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh
Confidence 4455421 12235667778888888875 26899999999998776644
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.34 E-value=2.5e-12 Score=96.36 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhccccchHHhHHHHHHHHHHHHHHHHHHhhHHHHHhhcC-CcchHHHHHHHHHHHHHHH
Q 022670 7 AAFSSIVSEGARSLFKPIIRQISYMFKYQSYIDELKDKVKRLEYKRERVEIPVHQVTEQG-DEIYKDVADWLNSVKEFTQ 85 (294)
Q Consensus 7 a~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~~i~~~l~~a~~~~-~~~~~~~~~wl~~l~~~a~ 85 (294)
|++++++.||++.+..++ ..+.+++++++.|+.+|..|+++|.+++.+. ...++.++.|+.++|+++|
T Consensus 1 a~v~~ll~KL~~ll~~E~-----------~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaY 69 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEF-----------KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSY 69 (115)
T ss_dssp CTTCSHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH-----------HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 356778899998888773 4466788889999999999999999998763 2358899999999999999
Q ss_pred HHHHhhhhchh
Q 022670 86 GTAKSITDDED 96 (294)
Q Consensus 86 d~~eD~ld~~~ 96 (294)
| +|||||++.
T Consensus 70 D-~ED~iD~f~ 79 (115)
T 3qfl_A 70 V-IEDVVDKFL 79 (115)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 9 999998664
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.12 E-value=5.1e-10 Score=101.81 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=86.9
Q ss_pred cccccHHHHHHHHHHHh-c----C--CCccEEEE--EecCCCcHHHHHHHHHHHhhhc---CCCC-EEEEEEcCCCCChH
Q 022670 157 AAFDSRMKVFQDVVEAL-K----D--NKHNIIGV--YEMGGVGKTTLVKQVAKQVMED---NLFD-EVVMAELTQNLDPQ 223 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gG~GKTtLa~~v~~~~~~~---~~f~-~~~wv~vs~~~~~~ 223 (294)
..++||+.+++.|.+++ . . .....+.| +|++|+|||||++.+++..... ..|. ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67899999999999888 3 2 24556777 9999999999999999876532 1233 35788887778999
Q ss_pred HHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhc--CCCeEEEEEeCCCCc
Q 022670 224 KIQDQLASDLGMKFDL-NDSIFHRAHQLCQRLK--KEKRILIILDNIWTK 270 (294)
Q Consensus 224 ~~~~~i~~~~~~~~~~-~~~~~~~~~~l~~~L~--~~kr~LiVlDdvw~~ 270 (294)
.++..++.+++...+. ..+...+...+.+.|. + ++++|||||+|..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~llvlDe~~~l 150 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVEN-HYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHT-CEEEEEEESTHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEEeCHHHH
Confidence 9999999999765432 2445666777777775 5 8999999999874
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.00 E-value=6.2e-09 Score=93.61 Aligned_cols=115 Identities=18% Similarity=0.292 Sum_probs=89.6
Q ss_pred cccccHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEcCCCCChHHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMED----NLFDEVVMAELTQNLDPQKIQDQ 228 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~ 228 (294)
..++||+.+++.+.+++.. ...+.+.|+|++|+||||||+.+++..... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998853 456789999999999999999999876432 10124578888888899999999
Q ss_pred HHHHhCCCCCC-CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCcc
Q 022670 229 LASDLGMKFDL-NDSIFHRAHQLCQRLKK-EKRILIILDNIWTKL 271 (294)
Q Consensus 229 i~~~~~~~~~~-~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~~ 271 (294)
++.+++...+. ..+..++...+.+.+.. +++++|||||++...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhc
Confidence 99999765433 24466677777777753 369999999998753
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=1.6e-09 Score=97.42 Aligned_cols=114 Identities=24% Similarity=0.299 Sum_probs=87.4
Q ss_pred cccccHHHHHHHHHHHhc----CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCC-CCEEEEEEcCCCCChHHHHHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALK----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNL-FDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
..++||+.+++.|.+++. ......+.|+|++|+|||||++.+++....... -...+|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999887 345678999999999999999999987654311 125678887777788888889888
Q ss_pred HhCCCCCC-CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 232 DLGMKFDL-NDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
+++...+. ..+..+....+.+.+.. +++.+|||||++..
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 87654332 23466667777777764 25899999999774
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=2.3e-09 Score=96.61 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=85.9
Q ss_pred cccccHHHHHHHHHHHhcC----CCccEEEEEecCCCcHHHHHHHHHHHhhhc----CC--CCEEEEEEcCCCC-ChHHH
Q 022670 157 AAFDSRMKVFQDVVEALKD----NKHNIIGVYEMGGVGKTTLVKQVAKQVMED----NL--FDEVVMAELTQNL-DPQKI 225 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~--f~~~~wv~vs~~~-~~~~~ 225 (294)
..++||+.+++.+.+++.. ...+.+.|+|++|+||||||+.+++..... .. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999988877653 346789999999999999999999876432 11 2356788887777 88899
Q ss_pred HHHHHHHh-CCCCCC-CCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 226 QDQLASDL-GMKFDL-NDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 226 ~~~i~~~~-~~~~~~-~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+..++.++ +..... ..+...+...+.+.+.. ++.+|||||++..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l 145 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTL 145 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHh
Confidence 99999887 332211 23445677888888887 6669999999875
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=1.7e-08 Score=90.96 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=86.8
Q ss_pred cccccHHHHHHHHHHHhcC----CCcc--EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALKD----NKHN--IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
..++||+.+++.|.+++.. .... .+.|+|++|+|||||++.+++....... ...+|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 6789999999999888764 2334 8999999999999999999987763211 3467888888888999999999
Q ss_pred HHhCCCCCC-CCCHHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 231 SDLGMKFDL-NDSIFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
.+++...+. ..+...+...+.+.+.. +++.+|||||++..
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 998765432 24566666777766652 27899999999775
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.90 E-value=3.4e-09 Score=93.96 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=77.4
Q ss_pred CccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC------ChHHHHHH
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL------DPQKIQDQ 228 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~------~~~~~~~~ 228 (294)
....++||+.+++.|.+++..+ +++.|+|++|+|||||++.+++... .+|+.+.... +...++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 3467899999999999988754 7999999999999999999997641 6777765432 56667776
Q ss_pred HHHHhCC-----------------CCC-CCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCcc
Q 022670 229 LASDLGM-----------------KFD-LNDSIFHRAHQLCQRLKKEKRILIILDNIWTKL 271 (294)
Q Consensus 229 i~~~~~~-----------------~~~-~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~~ 271 (294)
+...+.. ..+ ...+..++...+.+.+...++++|||||++...
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 6665432 000 013455666667666653148999999998754
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.82 E-value=5.3e-08 Score=85.56 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=79.9
Q ss_pred cccccHHHHHHHHHHHhc----CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCC---C--CEEEEEEcCCCCChHHHHH
Q 022670 157 AAFDSRMKVFQDVVEALK----DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNL---F--DEVVMAELTQNLDPQKIQD 227 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---f--~~~~wv~vs~~~~~~~~~~ 227 (294)
+.+.+|+.+.+.|..+|. ......+.|+|++|+|||++++.|++....... . -..+.++.....+...++.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 346789999998887765 457788999999999999999999998864221 1 1356777778889999999
Q ss_pred HHHHHhCCCC-CCCCCHHHHHHHHHHHh---cCCCeEEEEEeCCCCcc
Q 022670 228 QLASDLGMKF-DLNDSIFHRAHQLCQRL---KKEKRILIILDNIWTKL 271 (294)
Q Consensus 228 ~i~~~~~~~~-~~~~~~~~~~~~l~~~L---~~~kr~LiVlDdvw~~~ 271 (294)
.|.+++.... ......+ ....+...+ ++ ++++|+||++....
T Consensus 100 ~I~~~L~g~~~~~~~~~~-~L~~~f~~~~~~~~-~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 100 KIWFAISKENLCGDISLE-ALNFYITNVPKAKK-RKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHSCCC--CCCCHH-HHHHHHHHSCGGGS-CEEEEEEECCSSSC
T ss_pred HHHHHhcCCCCCchHHHH-HHHHHHHHhhhccC-CceEEEEecHHHhh
Confidence 9999995432 1112333 333334433 44 88999999998753
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.70 E-value=1.1e-07 Score=84.43 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred CccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-----CChHHHHHHH
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-----LDPQKIQDQL 229 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i 229 (294)
....++||+.+++.|.+ +.. +++.|+|++|+|||||++.+++.... . .+|+.+... .+...++..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL----P-YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC----C-EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC----C-EEEEEchhhccccCCCHHHHHHHH
Confidence 34678999999999999 765 69999999999999999999987642 2 578877642 3445555555
Q ss_pred HHH
Q 022670 230 ASD 232 (294)
Q Consensus 230 ~~~ 232 (294)
.+.
T Consensus 82 ~~~ 84 (357)
T 2fna_A 82 QKE 84 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.68 E-value=1.5e-07 Score=77.47 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=50.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCCh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDP 222 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 222 (294)
....+++|++..++.+.+++.......+.|+|++|+|||+||+.+++.......-...+.+..+...+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 445678999999999999998776666999999999999999999987643211122344555444443
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=3.9e-07 Score=73.09 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=43.8
Q ss_pred CccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999998777778899999999999999999987643
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.50 E-value=4.9e-07 Score=75.23 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=42.9
Q ss_pred cCccccccHHHHHHHHHHHhcCCC-ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNK-HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|++..++.|..++.... .+.+.|+|++|+||||||+.+++....
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345678999999999999987654 457899999999999999999987753
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=5.9e-07 Score=78.59 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=43.3
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|++..++.|.+++..+....+.++|++|+||||+|+.+++...
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999877665699999999999999999998764
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.37 E-value=6.7e-07 Score=71.52 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=43.3
Q ss_pred CccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999877777889999999999999999998764
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=2e-06 Score=75.34 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=43.4
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|++..++.|..++..+....+.++|++|+||||+|+.+++...
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999877766799999999999999999998754
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=9.4e-06 Score=69.87 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=40.6
Q ss_pred cCccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4467889999888888877642 3456799999999999999999998764
No 21
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.11 E-value=4.1e-06 Score=77.16 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=43.8
Q ss_pred ccCccccccHHHHH---HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVF---QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...++++|.++.+ ..|...+.......+.++|++|+||||||+.+.+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567889999888 7788888877888899999999999999999998765
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.08 E-value=1.6e-05 Score=64.74 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCC----CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC
Q 022670 162 RMKVFQDVVEALKDN----KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF 237 (294)
Q Consensus 162 r~~~~~~l~~~l~~~----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~ 237 (294)
+...++.+.+++... ....+.|+|++|+|||+||+.+++..... ....++++++ .++..+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 334556666666543 12789999999999999999999877632 3345666543 444444432211
Q ss_pred CCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 238 DLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 238 ~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+.. .+.+.+.+ . -+|||||++..
T Consensus 104 ---~~~~----~~~~~~~~-~-~~lilDei~~~ 127 (202)
T 2w58_A 104 ---QTMN----EKLDYIKK-V-PVLMLDDLGAE 127 (202)
T ss_dssp ---CCCH----HHHHHHHH-S-SEEEEEEECCC
T ss_pred ---chHH----HHHHHhcC-C-CEEEEcCCCCC
Confidence 1111 22233443 3 39999999664
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.06 E-value=3e-05 Score=65.68 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=53.8
Q ss_pred CccccccHHHHHHHHHHHh---cC---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCCh
Q 022670 155 DFAAFDSRMKVFQDVVEAL---KD---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDP 222 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 222 (294)
...+++|.+..++.|.+++ .. ...+.+.|+|++|+|||+||+.+++.... . .+.+..+.-.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~~~~~~~~~- 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--P---FLAMAGAEFVE- 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--C---EEEEETTTTSS-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C---EEEechHHHHh-
Confidence 3456778777666655443 22 23456889999999999999999987652 1 23344443211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 223 QKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.... .+...+...+...... ...+|+|||+...
T Consensus 78 -------------~~~~-~~~~~~~~~~~~a~~~-~~~vl~iDeid~l 110 (262)
T 2qz4_A 78 -------------VIGG-LGAARVRSLFKEARAR-APCIVYIDEIDAV 110 (262)
T ss_dssp -------------SSTT-HHHHHHHHHHHHHHHT-CSEEEEEECC---
T ss_pred -------------hccC-hhHHHHHHHHHHHHhc-CCeEEEEeCcchh
Confidence 0000 1112222233333344 6899999999864
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.05 E-value=1.8e-05 Score=68.94 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=58.5
Q ss_pred cCccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL 220 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 220 (294)
...+++.|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.... ..+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v------ 80 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISI------ 80 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEE------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEE------
Confidence 3456788888777777766531 24567899999999999999999987642 12222
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 221 DPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 221 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
+..++..... +. +...+...+...... ...+|+||++..
T Consensus 81 ~~~~l~~~~~---g~------~~~~~~~~f~~a~~~-~p~il~iDEid~ 119 (301)
T 3cf0_A 81 KGPELLTMWF---GE------SEANVREIFDKARQA-APCVLFFDELDS 119 (301)
T ss_dssp CHHHHHHHHH---TT------CTTHHHHHHHHHHHT-CSEEEEECSTTH
T ss_pred EhHHHHhhhc---Cc------hHHHHHHHHHHHHhc-CCeEEEEEChHH
Confidence 2233333221 11 111122333333345 789999999975
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.05 E-value=3.7e-05 Score=67.71 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=58.4
Q ss_pred cCccccccHHHHHHHHHHHhc------------CCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCC
Q 022670 154 KDFAAFDSRMKVFQDVVEALK------------DNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLD 221 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 221 (294)
...+++.|.+..++.|.+.+. ....+.+.++|++|+|||+||+++++.... . ..+.+..+.-.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~- 83 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLV- 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHH-
Confidence 445678888887777776652 113467899999999999999999987621 1 12233333211
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh-cCCCeEEEEEeCCCCc
Q 022670 222 PQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRL-KKEKRILIILDNIWTK 270 (294)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-~~~kr~LiVlDdvw~~ 270 (294)
.... ..+.. ....+.+.. .. +..+|+|||+...
T Consensus 84 -------------~~~~-g~~~~-~~~~lf~~a~~~-~~~vl~iDEid~l 117 (322)
T 1xwi_A 84 -------------SKWL-GESEK-LVKNLFQLAREN-KPSIIFIDEIDSL 117 (322)
T ss_dssp -------------CSSC-CSCHH-HHHHHHHHHHHT-SSEEEEEETTTGG
T ss_pred -------------hhhh-hHHHH-HHHHHHHHHHhc-CCcEEEeecHHHh
Confidence 1111 12222 233333333 34 7899999999765
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.01 E-value=7.3e-06 Score=71.45 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+++|++..++.|.+++..+....+.++|++|+|||++|+.+++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4456789999999999999887766669999999999999999999875
No 27
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.99 E-value=2.4e-05 Score=62.63 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcC---CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC
Q 022670 162 RMKVFQDVVEALKD---NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD 238 (294)
Q Consensus 162 r~~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~ 238 (294)
....++.+.+++.+ .....+.|+|+.|+|||||++.++........+. ++++ +..+++..+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 45556666666543 2457899999999999999999998775222222 2233 344555554433321111
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 239 LNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 239 ~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
. .+.+.+. +.-+|||||++.
T Consensus 92 ---~------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 92 ---T------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp ---S------HHHHHHH--TCSEEEEETCSS
T ss_pred ---H------HHHHHhc--CCCEEEEeCCCC
Confidence 1 1223333 345788999974
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.98 E-value=3.4e-05 Score=66.76 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=39.9
Q ss_pred cCccccccHHHHHHHHHHHhcC------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|.+++.. ...+.+.|+|++|+||||||+.+++...
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3456789999888888877631 2356789999999999999999998664
No 29
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.88 E-value=3e-05 Score=67.90 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=46.7
Q ss_pred CccccccHHHHHHHHHHHhcC-----CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHH
Q 022670 155 DFAAFDSRMKVFQDVVEALKD-----NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKI 225 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 225 (294)
...+++|++..+..+..++.. .....+.|+|++|+|||+||+.+++.... ..++++.+......++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDL 80 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHH
Confidence 456789999888888777652 24467899999999999999999986642 1245555544343333
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.86 E-value=2.8e-05 Score=68.40 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=40.2
Q ss_pred ccCccccccHHHHHHHHHHHhc----------C--CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALK----------D--NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.....+++|.+..++.|.+++. . ...+-+.++|++|+|||+||+++++...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3446788999988888888762 1 1245689999999999999999998765
No 31
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.86 E-value=4.3e-05 Score=68.10 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=42.0
Q ss_pred CccccccHHHHHHHHHHHhcCCC-ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNK-HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++|++..++.|..++..++ ...+.|+|+.|+||||+|+.+.+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34678999999999999887654 356889999999999999999987653
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.85 E-value=4.3e-05 Score=66.39 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHhc---------------CCCccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 158 AFDSRMKVFQDVVEALK---------------DNKHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
+++|.+..++.|.+++. ......+.|+|++|+|||+||+.+++.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57787777766665543 2345578999999999999999999877543
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.85 E-value=8.5e-05 Score=66.28 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=39.2
Q ss_pred CccccccHHHHHHHHHHHhc------------CCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 155 DFAAFDSRMKVFQDVVEALK------------DNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+++|.+..++.|.+++. ....+.+.|+|++|+|||+||+.+++...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35678899888888887763 12457789999999999999999998654
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=3.4e-05 Score=72.40 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=48.0
Q ss_pred cCccccccHHHHHHHHHHHhcC-----------------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-----------------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
....+++|++..++.|.+|+.. ...+.+.|+|++|+||||||+.+++... + ..+.++.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 4467899999999999999874 1347899999999999999999998763 2 2344555
Q ss_pred CCCCC
Q 022670 217 TQNLD 221 (294)
Q Consensus 217 s~~~~ 221 (294)
+....
T Consensus 111 s~~~~ 115 (516)
T 1sxj_A 111 SDVRS 115 (516)
T ss_dssp TSCCC
T ss_pred CCcch
Confidence 55444
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.81 E-value=7.6e-05 Score=74.24 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=43.2
Q ss_pred CccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 155 DFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++++||+.++..+++.+.....+.+.++|.+|+||||||+.+++...
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3577899999999999999876667789999999999999999998764
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.79 E-value=8.9e-05 Score=66.90 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=40.1
Q ss_pred cCccccccHHHHHHHHHHHhcC------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|.+++.. ...+.+.|+|.+|+|||+||+.+++...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4467889999998888887631 2346799999999999999999987654
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.78 E-value=3.9e-05 Score=68.45 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=38.3
Q ss_pred cCccccccHHHHHHHHHHHhcC------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|.+.+.- ...+-+.++|++|+|||+||+.+++...
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456788888888877776520 1234588999999999999999998775
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=0.00014 Score=61.43 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.7
Q ss_pred cCccccccHHHHHHHHHH---HhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVE---ALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.+.+ ++... ..+-+.|+|++|+||||||+.+++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 445678887766655544 33321 234588999999999999999998764
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.76 E-value=0.00015 Score=66.66 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=34.5
Q ss_pred ccccc-cH--HHHHHHHHHHhcCCC-ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFD-SR--MKVFQDVVEALKDNK-HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~-gr--~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+.|+ |. ......+..+..... ...+.|+|++|+||||||+.+++....
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555 43 334445555544433 678999999999999999999997754
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.76 E-value=7.4e-05 Score=66.58 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=38.8
Q ss_pred ccccccHHHHHHH---HHHHhcCCCc--cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFDSRMKVFQD---VVEALKDNKH--NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.++++|++...+. +.+.+..... +.+.|+|++|+|||+||+.+.+....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6788998877654 5565555443 58999999999999999999998763
No 41
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00019 Score=65.63 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=58.5
Q ss_pred cCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC
Q 022670 154 KDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL 220 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 220 (294)
..++++.|.++.++.|.+.+. . ...+-|.++|++|+|||+||+++++..... | +.+..+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~---~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--F---IFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEehhhhc
Confidence 346777887777776666543 1 135678999999999999999999987742 2 233333211
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 221 DPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 221 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
..+.. .+ ......+...-+....++|++|++...
T Consensus 253 --------------sk~~G-es-e~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 253 --------------DKYIG-ES-ARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp --------------CSSSS-HH-HHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred --------------cccch-HH-HHHHHHHHHHHHhcCCceeeeeccccc
Confidence 11110 11 222333333333228899999999753
No 42
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.72 E-value=0.00012 Score=64.60 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=40.9
Q ss_pred cCccccccHHHHHHHHHHHhcC-----CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-----NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|++..++.+..++.. .....+.|+|++|+|||+||+.+.+...
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3467899999988888888763 3456789999999999999999987654
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00018 Score=64.81 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=58.5
Q ss_pred ccCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC
Q 022670 153 VKDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN 219 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 219 (294)
...++++.|.++.++.|.+.+. . ...+-+.++|++|+|||.||+++++..... | +.+..+.-
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l 218 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAEL 218 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHh
Confidence 3446777888777776666543 1 134668999999999999999999987743 2 23333321
Q ss_pred CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 220 LDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 220 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
. ..+-. .+ +..+..+...-+...+++|++|+++..
T Consensus 219 ~--------------sk~vG-es-e~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 219 V--------------QKYIG-EG-SRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp S--------------CSSTT-HH-HHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred h--------------ccccc-hH-HHHHHHHHHHHHHhCCceEeeecchhh
Confidence 1 11110 11 222333333332227899999999753
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.69 E-value=0.00022 Score=62.47 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=41.7
Q ss_pred cCccccccHHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++.++.|.+++..... .++.+.|++|+|||++|+.+.+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4467889999999999999987654 5667778899999999999998664
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.68 E-value=0.00015 Score=66.75 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=39.2
Q ss_pred cCccccccHHHHHHHHHHHhc------------CCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEALK------------DNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+++|.+..++.|.+.+. ....+.+.++|++|+|||+||+.+++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 445778898888888887762 1234678999999999999999999876
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.68 E-value=0.00035 Score=68.48 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=43.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++|++.++..+.+.|.......+.++|.+|+|||++|+.+.+...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999877777889999999999999999998764
No 47
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00013 Score=64.44 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+..++.|..++..++...+.++|+.|+||||+|+.+.....
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 44567788888899999888877665589999999999999999998764
No 48
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.62 E-value=0.0004 Score=56.87 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCC------------CCCCCCHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMK------------FDLNDSIF 244 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~------------~~~~~~~~ 244 (294)
.-.++.|+|.+|+|||||+.++.. .. -..++|+.....++...+.. +...++.. ........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 457899999999999999999987 21 24677887776556655543 33333221 11111223
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 245 HRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 245 ~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.....+...+.. +.-+||||.+...
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 345555555555 6889999998765
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00032 Score=63.94 Aligned_cols=51 Identities=27% Similarity=0.296 Sum_probs=39.3
Q ss_pred cCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+.++.|.+..++.|.+.+. . ...+-+.++|++|+|||+||+++++....
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 446778888887777766543 1 13466899999999999999999998763
No 50
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00021 Score=65.19 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=40.2
Q ss_pred ccCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 153 VKDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...++++.|.++.++.|.+.+. . ...+-|.++|++|+|||.||+++++....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 3446788888888877776532 2 13567899999999999999999998774
No 51
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00047 Score=62.54 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=58.6
Q ss_pred ccCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC
Q 022670 153 VKDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN 219 (294)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 219 (294)
...++++-|.++.++.|.+.+. . ...+=|.++|++|+|||.||+++++..... | +.+..+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~- 251 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSE- 251 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGG-
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHH-
Confidence 3446777788777776666542 2 134679999999999999999999987742 2 2232221
Q ss_pred CChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 220 LDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 220 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
+..... ...+.....+...-+....++|++|+++..
T Consensus 252 -------------l~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 252 -------------LIQKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287 (437)
T ss_dssp -------------GCCSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred -------------hhhccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence 111111 112223333433333227899999999653
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00031 Score=64.34 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred CccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 155 DFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.+.++.|.++.++.|.+.+. . ...+-|.++|++|+|||+||+++++....
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 35677888887777766532 1 24577899999999999999999998774
No 53
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.55 E-value=4.2e-05 Score=66.90 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=47.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc--CCCCChHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhc
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL--TQNLDPQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLK 255 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 255 (294)
.+++.|+|++|+|||+||.++...... .++|+++ .+..+. -. .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~---------------~~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSG---------------YN-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTT---------------CB-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhh---------------hh-cCHHHHHHHHHHHHh
Confidence 456789999999999999999876221 1245555 332110 00 345666677777777
Q ss_pred CCCeEEEEEeCCCCc
Q 022670 256 KEKRILIILDNIWTK 270 (294)
Q Consensus 256 ~~kr~LiVlDdvw~~ 270 (294)
. .+ |||+|++...
T Consensus 182 ~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 Q-HR-VIVIDSLKNV 194 (331)
T ss_dssp H-CS-EEEEECCTTT
T ss_pred h-CC-EEEEeccccc
Confidence 6 66 9999999764
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.54 E-value=0.00029 Score=60.12 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=24.7
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 175 DNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 175 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
......+.|+|++|+|||+||+.+++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567789999999999999999998754
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.52 E-value=0.00024 Score=58.81 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=44.0
Q ss_pred ccccccH---HHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 156 FAAFDSR---MKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 156 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
.+++++. ...++.+..+......+.+.|+|++|+||||||+.+++..... .....|++++.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 4555552 4566777777666567889999999999999999999877643 33456676653
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.51 E-value=0.00029 Score=65.53 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=38.1
Q ss_pred ccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+++|.+..++.|.+++.. ...+-+.|+|++|+|||+||+++++...
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 56788988888888776541 2345689999999999999999987653
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.49 E-value=0.00044 Score=60.54 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCC--CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 163 MKVFQDVVEALKDN--KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 163 ~~~~~~l~~~l~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
......+..++... ....+.|+|++|+||||||+.+++....
T Consensus 20 ~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 20 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp HHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 33444555555443 3578999999999999999999987753
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.42 E-value=0.00025 Score=69.65 Aligned_cols=47 Identities=30% Similarity=0.363 Sum_probs=42.5
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++++|++..++.+...|......-+.++|++|+|||++|+.+.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999987666778999999999999999999876
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.00025 Score=61.45 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999885
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=0.0009 Score=61.90 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=55.9
Q ss_pred cCccccccHHHHHHHHHHH---hcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCC
Q 022670 154 KDFAAFDSRMKVFQDVVEA---LKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLD 221 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 221 (294)
....++.|.++.++++.+. +... -.+-+.|+|++|+|||+||+.++..... .| +.++.+.-..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~f---~~is~~~~~~ 87 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--PF---FHISGSDFVE 87 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--CE---EEEEGGGTTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--Ce---eeCCHHHHHH
Confidence 3456788877766555544 3321 1345889999999999999999987652 22 2344332211
Q ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 222 PQKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
. ... .....+...+...... ..++|+||++..
T Consensus 88 ~--------------~~g-~~~~~~r~lf~~A~~~-~p~ILfIDEid~ 119 (476)
T 2ce7_A 88 L--------------FVG-VGAARVRDLFAQAKAH-APCIVFIDEIDA 119 (476)
T ss_dssp C--------------CTT-HHHHHHHHHHHHHHHT-CSEEEEEETGGG
T ss_pred H--------------Hhc-ccHHHHHHHHHHHHhc-CCCEEEEechhh
Confidence 0 000 1112222334444455 789999999955
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.34 E-value=0.00023 Score=65.89 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=42.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++++|++.+++.+...+.......+.++|++|+|||+||+.+++...
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999876667788999999999999999998763
No 62
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.34 E-value=0.0013 Score=58.50 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD-----LNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 251 (294)
.-+++.|+|.+|+|||||+.++........ ..++|+.....++.. ..++++.... .+.+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457899999999999999999998655321 245788777666654 3445544321 1245666666666
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
..++..+.-++|+|.+-..
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 6665325668999998654
No 63
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.34 E-value=0.0021 Score=55.98 Aligned_cols=87 Identities=8% Similarity=0.104 Sum_probs=57.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHH-HHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHR-AHQLCQR 253 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~-~~~l~~~ 253 (294)
++-|+|.+|+|||||+-++.........=..++|+.....++.. .+++++.+.+. +.+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999887765432112467888887777764 25667665322 2345555 4333322
Q ss_pred --hcCCCeEEEEEeCCCCcc
Q 022670 254 --LKKEKRILIILDNIWTKL 271 (294)
Q Consensus 254 --L~~~kr~LiVlDdvw~~~ 271 (294)
++.++.-|||+|-|-...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCB
T ss_pred HHhhccCceEEEEecccccc
Confidence 344478999999997653
No 64
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.00059 Score=53.49 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.9
Q ss_pred cEEEEEecCCCcHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQV 198 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v 198 (294)
++|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 65
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=0.0019 Score=53.62 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=57.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEcCCCCChHHHHHHHHHHhCCCC---------CCCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN----LFDEVVMAELTQNLDPQKIQDQLASDLGMKF---------DLNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---------~~~~~~ 243 (294)
.-.++.|+|.+|+|||||+..+........ .-..++|+.....+....+. .++..++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457899999999999999999987532111 12567888777655555443 3444444321 011233
Q ss_pred HH---HHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 244 FH---RAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 244 ~~---~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+ ....+.+.+...+.-+||||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 33 2334555554227889999998764
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.31 E-value=0.00052 Score=53.20 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=30.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
....++|+|..|+|||||++.++...... .+. .+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHHH
Confidence 56789999999999999999999876532 222 45665544
No 67
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.31 E-value=0.001 Score=56.98 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=32.7
Q ss_pred cCccccccHHHHHHHHHHHhc----C---------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALK----D---------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....++.|.+..++.|.+.+. . .-.+-+.++|++|+|||||++.++....
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 345667777777776665432 1 1112389999999999999999998654
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00017 Score=63.69 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=42.3
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|+++.++.|..++.......+.++|++|+||||+|+.+.+...
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999998877555589999999999999999998754
No 69
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.26 E-value=0.067 Score=48.72 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=25.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
..++|.++|.+|+||||++.++......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999877653
No 70
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.25 E-value=0.00058 Score=59.19 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=41.4
Q ss_pred cccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 157 AAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
..++|.+..++.+...+... ....+.++|++|+|||++|+.++...... -...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccc
Confidence 34667777777777766532 13579999999999999999999876421 12234555554
No 71
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.24 E-value=0.0006 Score=59.48 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCC---CccEEEEEecCCCcHHHHHHHHHHHhh-hcCCCCEEEEEEcC
Q 022670 162 RMKVFQDVVEALKDN---KHNIIGVYEMGGVGKTTLVKQVAKQVM-EDNLFDEVVMAELT 217 (294)
Q Consensus 162 r~~~~~~l~~~l~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~vs 217 (294)
+...+..+.+++... ....+.|+|+.|+|||+||..+++... .. .+ .+++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEHH
Confidence 444555666666542 257889999999999999999999766 43 23 33455443
No 72
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.002 Score=56.52 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=60.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCC----CCEEEEEEcCCCCChHHHHHHHHHHhCCCC---------CCCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNL----FDEVVMAELTQNLDPQKIQDQLASDLGMKF---------DLNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---------~~~~~~ 243 (294)
...++.|+|.+|+|||||+.++......... =..++|++....++..++.. +++.++.+. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 4578999999999999999999876432110 24678998888777776653 445554432 111233
Q ss_pred H---HHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 244 F---HRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 244 ~---~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
+ ++...+...++. .+.-+||+|.+...
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 3 344555556642 27889999998654
No 73
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.20 E-value=0.0026 Score=56.83 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=58.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD-----LNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 251 (294)
..+++.|+|.+|+||||||.++....... =..++|+.....++.. ....++.+.. .+.+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45688999999999999999988765432 2357899888766654 2444544321 1245666666666
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
..++..+--+||+|.+-..
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 6665425669999999654
No 74
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.20 E-value=0.0018 Score=57.50 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=57.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD-----LNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 251 (294)
.-+++.|+|.+|+|||||+.++....... =..++|+.....++.. ..+.++.+.. .+.+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46789999999999999999998655432 1356888887766653 2444544321 1235556666555
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
...+..+.-+||+|.+-..
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 5554325679999998654
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.19 E-value=0.00032 Score=53.98 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=33.3
Q ss_pred ccccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 158 AFDSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++|+......+.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 456777777777776542 334557899999999999999999754
No 76
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.18 E-value=0.0025 Score=56.40 Aligned_cols=93 Identities=14% Similarity=0.246 Sum_probs=59.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcC----CCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC------------CC
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN----LFDEVVMAELTQNLDPQKIQDQLASDLGMKFD------------LN 240 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~------------~~ 240 (294)
.-.++.|+|.+|+|||||+.++........ .=..++|+.....++...+.. ++..++.+.. ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457899999999999999999987642211 124678998888777776543 3444443311 11
Q ss_pred CCHHHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 241 DSIFHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 241 ~~~~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
....++...+...++. .+--|||+|.+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2222344445555542 27889999998654
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.18 E-value=0.00064 Score=66.66 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=33.7
Q ss_pred ccccccHHHHHHHHHHH----hcCC---------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEA----LKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~----l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++++.|.++.++.|.++ |... ..+-|.++|++|+|||+||+++++...
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 55666665555554444 3221 346689999999999999999997665
No 78
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.17 E-value=0.0014 Score=57.39 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=60.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcC---------CC-----CEEEEEEcCCCCChHHHHHHHHHHhCCCC-----
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDN---------LF-----DEVVMAELTQNLDPQKIQDQLASDLGMKF----- 237 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---------~f-----~~~~wv~vs~~~~~~~~~~~i~~~~~~~~----- 237 (294)
.-.++.|+|.+|+|||+||.++........ .. ..++|++....++..++.. ++..++.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457899999999999999999987532110 11 4678888888777776664 345554432
Q ss_pred ----CCCCCHH---HHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 238 ----DLNDSIF---HRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 238 ----~~~~~~~---~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
....+.+ ++...+...++. .+.-|||+|.+-..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 1112333 244455566653 36789999998643
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.0018 Score=56.41 Aligned_cols=71 Identities=7% Similarity=-0.028 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhc--CCCCEEEEEEcCC-CCChHHHHHHHHHHhC
Q 022670 162 RMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMED--NLFDEVVMAELTQ-NLDPQKIQDQLASDLG 234 (294)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~f~~~~wv~vs~-~~~~~~~~~~i~~~~~ 234 (294)
.++.++.|...+..++.....++|+.|+||||+|..+.+..... .+.+. .++..+. ...... .+++++.+.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHh
Confidence 34556777787777677788899999999999999998753211 12333 4454443 233333 345555553
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=0.00033 Score=62.00 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=40.7
Q ss_pred cCccccccHHHHHHHHHHHh-cCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 154 KDFAAFDSRMKVFQDVVEAL-KDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+++|++...+.+..++ ..++...+.|+|+.|+|||||++.+....
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999999999988 65555448999999999999999998854
No 81
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.12 E-value=0.0031 Score=54.61 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++++|.+|+||||++..+......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999876653
No 82
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.0032 Score=56.01 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=55.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD-----LNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 251 (294)
..+++.|+|.+|+||||||.++........ ..++|+.....++... ...++.+.. .+.+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 457899999999999999999887654321 3578888877766442 344444321 1134455555554
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
...+..+--+||+|.+-..
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 4443225669999998543
No 83
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.97 E-value=0.0011 Score=53.80 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcC---CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 162 RMKVFQDVVEALKD---NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 162 r~~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...++.|.+.+.. ....+|+|.|..|+|||||++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45566777777664 3567899999999999999999988654
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.96 E-value=0.00076 Score=66.58 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+++++|.+..++.|.+++.. .....+.|+|++|+||||||+.+.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 56778877777776666531 2346799999999999999999987543
No 85
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.95 E-value=0.00078 Score=59.40 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=37.9
Q ss_pred cCccccccHHHHHHHHHHHhcC-----CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKD-----NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.....++|.+..++.+.-.+.. .....+.++|+.|+||||||+.++....
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456677877777766655542 2346799999999999999999998765
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.0041 Score=51.06 Aligned_cols=88 Identities=15% Similarity=0.228 Sum_probs=50.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD------------------ 238 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~------------------ 238 (294)
.-.++.|+|..|+|||||++.+........ ..++|+.... ....+...+. +++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 356899999999999999999986543221 2345555433 4445444332 3332110
Q ss_pred -----CCCCHHHHHHHHHHHhcC-C-CeEEEEEeCCCC
Q 022670 239 -----LNDSIFHRAHQLCQRLKK-E-KRILIILDNIWT 269 (294)
Q Consensus 239 -----~~~~~~~~~~~l~~~L~~-~-kr~LiVlDdvw~ 269 (294)
...+..++...+...+.. + +..+||||++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 112455555555554432 0 345999999874
No 87
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.91 E-value=0.0012 Score=53.90 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 164 KVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 164 ~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++.|.+.+.. ....+++|+|..|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666653 4568999999999999999999998665
No 88
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.87 E-value=0.001 Score=57.34 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=37.5
Q ss_pred cccccHHHHHHHHHHHhcC--------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALKD--------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|.+..++.+...+.. .....+.++|++|+|||+||+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578888888888776643 2355688999999999999999998764
No 89
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.87 E-value=0.0052 Score=54.05 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCc-cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 162 RMKVFQDVVEALKDNKH-NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 162 r~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++..+.+...+..++. ..+.++|+.|+|||++|+.+.+...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34556677777776654 5689999999999999999998764
No 90
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.86 E-value=0.00085 Score=60.05 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=62.1
Q ss_pred HHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEcCCCC-ChHHHHHHHHHHhCC-----CCCC
Q 022670 168 DVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMED-NLFDEVVMAELTQNL-DPQKIQDQLASDLGM-----KFDL 239 (294)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~-----~~~~ 239 (294)
+.++.+.. ..-..++|+|..|+|||||++.+.+....+ ..+.+ +++-+.+.. ...+ +.+.+.. ..++
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~----~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTE----MQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHH----HHTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHH----HHHHhCeEEEEeCCCC
Confidence 45565553 356789999999999999999998765432 23444 356777543 2223 3333311 1121
Q ss_pred CCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccccCCc
Q 022670 240 NDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIGIPS 280 (294)
Q Consensus 240 ~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~~~~ 280 (294)
+.... ...-.+.+++.+ ++..||++||+..- .....+..+.
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~ 284 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 284 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhc
Confidence 11111 112223444432 49999999999776 4555555544
No 91
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.82 E-value=0.0067 Score=52.94 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=36.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
.-.++.|.|.+|+|||||+.++..+..... ..++|++.- .+..++...++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 457899999999999999999987665332 567777655 355555555543
No 92
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.81 E-value=0.00036 Score=53.57 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 158 AFDSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
+++|+......+.+.+.. .....|.|+|..|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 456777777666666542 23445789999999999999999864
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.80 E-value=0.0075 Score=49.44 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=52.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc---C-CCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED---N-LFDEVVMAELTQNLDPQKIQDQLASDLGMKFD---------LNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~-~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 243 (294)
.-.+++|+|+.|+|||||++.+....... . .-...+|+.-...+.... +..+.+.++.... ...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 45789999999999999999998643321 1 134577776555444433 2333443332210 01111
Q ss_pred ---HHHHHHHHHHhc-----CCCeEEEEEeCCCCc
Q 022670 244 ---FHRAHQLCQRLK-----KEKRILIILDNIWTK 270 (294)
Q Consensus 244 ---~~~~~~l~~~L~-----~~kr~LiVlDdvw~~ 270 (294)
......+.+.+. ..+.-+||||+.-..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 112233344443 237789999988653
No 94
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0047 Score=58.17 Aligned_cols=47 Identities=32% Similarity=0.339 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHHHHhc------CCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALK------DNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+++|.++....+.+.+. +....++.++|++|+||||||+.++....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456776666665544432 22466899999999999999999998774
No 95
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.73 E-value=0.013 Score=52.99 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=55.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhc----CCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------CCCCH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMED----NLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD---------LNDSI 243 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 243 (294)
.-.++.|+|.+|+|||||+.+++-..... ..-..++|+.....+....+. .+.+.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 45789999999999999999876433211 023467888777666655543 35555554311 11222
Q ss_pred H---HHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 244 F---HRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 244 ~---~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
. +....+.+.+...+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 2333344444332788999998754
No 96
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.72 E-value=0.0025 Score=59.26 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=34.9
Q ss_pred cCccccccHHHHHHHHHH---HhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVE---ALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....++.|.++.+..+.+ ++... -.+-+.|+|++|+||||||+.++....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677887766555444 44321 123489999999999999999998664
No 97
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.70 E-value=0.0011 Score=51.99 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|.|+.|+||||+++.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 98
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.70 E-value=0.001 Score=52.55 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|.|++|+||||+++.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998654
No 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.0012 Score=53.43 Aligned_cols=27 Identities=33% Similarity=0.241 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|.|+|+.|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 100
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.64 E-value=0.0013 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999864
No 101
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.64 E-value=0.0042 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|.|++|+||+|.|+.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4688999999999999999998664
No 102
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.62 E-value=0.00085 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+-+.|+|++|+|||+||+.+++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4478999999999999999998765
No 103
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.61 E-value=0.0075 Score=55.36 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=58.2
Q ss_pred HHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhC--------CCCCC
Q 022670 170 VEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLG--------MKFDL 239 (294)
Q Consensus 170 ~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~--------~~~~~ 239 (294)
++.|.. .+-+.++|+|..|+|||||++.+......... +.++++-+.+.. ...+++.++.+.-. ...++
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d 220 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNE 220 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTS
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCC
Confidence 444432 13456899999999999999999887664322 345667777653 34555555543200 01121
Q ss_pred CCCHHH----HHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 240 NDSIFH----RAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 240 ~~~~~~----~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
+..... ..-.+.+++.+ +++.||++||+..-
T Consensus 221 ~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 221 PPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 111111 12234555532 49999999999654
No 104
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.61 E-value=0.0016 Score=52.80 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 175 DNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 175 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.....+|.|+|+.|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999998775
No 105
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.60 E-value=0.012 Score=54.13 Aligned_cols=101 Identities=18% Similarity=0.293 Sum_probs=67.1
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC----------
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK---------- 236 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~---------- 236 (294)
.++.|.. .+-.-++|.|..|+|||+|++.+.+.... .+-+.++++-+.+.. ...+++.++.+.=..+
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 4555553 35677899999999999999999987532 234677888888765 4567777776541111
Q ss_pred -----CCCC----CCHHHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 237 -----FDLN----DSIFHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 237 -----~~~~----~~~~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
.+++ .-.....-.+-+++++ ++.+||++||+..-
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1111 0112334556777775 59999999998654
No 106
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.60 E-value=0.0016 Score=55.21 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=38.5
Q ss_pred ccccccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC
Q 022670 156 FAAFDSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN 219 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 219 (294)
.+.++|.......+.+.+.. .....+.|+|..|+|||+||+.+++..... -...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 34567877777776665542 234568899999999999999999754321 122345666543
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.59 E-value=0.0012 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999997654
No 108
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.57 E-value=0.0016 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998765
No 109
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.57 E-value=0.0014 Score=57.77 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=36.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|.+.....+...+.......+.|+|.+|+|||+||+.+.+...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567888877665544444333334589999999999999999998654
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.55 E-value=0.0016 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.|.|+|+.|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999997664
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.027 Score=51.42 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.++|.+|+||||++..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999886654
No 112
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.55 E-value=0.0031 Score=51.79 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 165 VFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 165 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+.+.+.+.......|.|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344555555555778899999999999999999998654
No 113
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.54 E-value=0.0099 Score=52.68 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=55.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCC----CEEEEEEcCCCCChHHHHHHHHHHhCCCC---------CCCCC-
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF----DEVVMAELTQNLDPQKIQDQLASDLGMKF---------DLNDS- 242 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---------~~~~~- 242 (294)
.-.++.|+|..|+|||||+.++.-........ ..++|+.....+....+ ..+.+..+... ....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56889999999999999999998764211001 24588877665544443 33444433221 00111
Q ss_pred --HHHHHHHHHHHhcC-----CCeEEEEEeCCCCc
Q 022670 243 --IFHRAHQLCQRLKK-----EKRILIILDNIWTK 270 (294)
Q Consensus 243 --~~~~~~~l~~~L~~-----~kr~LiVlDdvw~~ 270 (294)
..++...+...+.. .+.-|||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 22344455555541 27889999999765
No 114
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.53 E-value=0.0017 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|.|.|+.|+||||+++.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987763
No 115
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.53 E-value=0.023 Score=52.14 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=68.3
Q ss_pred HHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC---------
Q 022670 168 DVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------- 236 (294)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------- 236 (294)
+.++.|.. .+-.-++|+|..|+|||+|++.+.+.... .+-+.++++-+.+.. ...++++++.+.=..+
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 35565553 35677999999999999999999887532 234667888888754 4567777776542221
Q ss_pred -----CCCCCCH----HHHHHHHHHHhcC--CCeEEEEEeCCCCc-cccccc
Q 022670 237 -----FDLNDSI----FHRAHQLCQRLKK--EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 237 -----~~~~~~~----~~~~~~l~~~L~~--~kr~LiVlDdvw~~-~~w~~l 276 (294)
.+++... ....-.+-+++++ +++.||++||+..- ..+..+
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEi 272 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 272 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHh
Confidence 1111001 1223445566653 59999999999765 344444
No 116
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=52.03 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=22.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 117
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.51 E-value=0.034 Score=50.60 Aligned_cols=28 Identities=29% Similarity=0.198 Sum_probs=24.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.++|.+|+||||++..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999876654
No 118
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.51 E-value=0.012 Score=53.39 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...++.++|.+|+||||++..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987664
No 119
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.49 E-value=0.0041 Score=55.04 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHhc----CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 161 SRMKVFQDVVEALK----DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 161 gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.+...+.+++.+. .++...|.|+|+.|+||||+++.++.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34445555555543 445667999999999999999999887653
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.49 E-value=0.0016 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 121
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.0025 Score=52.18 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 162 RMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 162 r~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+..+.+...+......+|.|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344555566655555788999999999999999999987754
No 122
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.47 E-value=0.02 Score=50.39 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=55.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh-C---------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL-G--------------------- 234 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~-~--------------------- 234 (294)
.-.++.|.|.+|+||||||.++..+.... =..++|++. +.+..++...++... +
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAK 120 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHH
Confidence 45689999999999999999998876542 135566655 445666666654321 0
Q ss_pred ---------C--CCCCCCCHHHHHHHHHHHhcCC-CeEEEEEeCCCC
Q 022670 235 ---------M--KFDLNDSIFHRAHQLCQRLKKE-KRILIILDNIWT 269 (294)
Q Consensus 235 ---------~--~~~~~~~~~~~~~~l~~~L~~~-kr~LiVlDdvw~ 269 (294)
. ......+..++...++...+.. +.-|||+|-+..
T Consensus 121 a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql 167 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL 167 (338)
T ss_dssp HHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred HHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence 0 0111245666666666554432 478899996643
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.016 Score=47.94 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC-------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF------------------- 237 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~------------------- 237 (294)
.-.++.|+|.+|+|||||+.++....... =..++|++... ...++...+ .+++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~ 96 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGI 96 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhc
Confidence 45689999999999999998887654321 13456666543 344444333 2222110
Q ss_pred -----------CCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 238 -----------DLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 238 -----------~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
..+.+..++...+.+.++..+.-+||+|.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 97 GKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp CC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 011344555666666654213447999988653
No 124
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.45 E-value=0.002 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 125
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.45 E-value=0.0019 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 126
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.44 E-value=0.0035 Score=57.67 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=37.2
Q ss_pred ccccccHHHHHHHHH---HHhcCC--CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 156 FAAFDSRMKVFQDVV---EALKDN--KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~---~~l~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+++|.++.++.+. +++... ..+-+.++|++|+|||+||+.+.+....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 477889888766544 444433 2357899999999999999999998763
No 127
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.43 E-value=0.0021 Score=50.36 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+..+|+|.|+.|+||||+++.+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998765
No 128
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.42 E-value=0.0018 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++|.|.|+.|+||||||+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 129
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.40 E-value=0.022 Score=49.42 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.|+|.+|+||||++..++.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4578999999999999999999986654
No 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.39 E-value=0.0025 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=23.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|+.|+||||+++.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988664
No 131
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.38 E-value=0.0053 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|+|+.|+|||||++.++....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998664
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.37 E-value=0.002 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998765
No 133
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.36 E-value=0.0022 Score=50.82 Aligned_cols=26 Identities=38% Similarity=0.291 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999997664
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.36 E-value=0.055 Score=47.42 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.0
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|+|+.|+||||+++.+......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999876654
No 135
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.36 E-value=0.042 Score=47.43 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+++++|.+|+||||++..+......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999876653
No 136
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.34 E-value=0.0022 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.34 E-value=0.0025 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0049 Score=53.21 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=33.8
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcC-CCCEEEEEEcCCCCChHHHHHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDN-LFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
....+|+|+|..|+|||||++.+........ .......|+.-.-+-......++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 3567899999999999999999988665321 12334443444333233444444
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.29 E-value=0.0029 Score=50.45 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.++|+|+.|+|||||++.+.....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987653
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.28 E-value=0.0032 Score=50.40 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.|.|+.|+||||+++.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999997654
No 141
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.28 E-value=0.0029 Score=55.39 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=36.6
Q ss_pred cccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|++..+..+...+... ..+.++|.+|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46778888888877776643 4688999999999999999998664
No 142
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.28 E-value=0.0026 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.28 E-value=0.0026 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|+|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998664
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.28 E-value=0.0025 Score=51.82 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++|.|+|+.|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998765
No 145
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.003 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999874
No 146
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.26 E-value=0.0028 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.26 E-value=0.003 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999876
No 148
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.25 E-value=0.0028 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..+|+|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 149
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.25 E-value=0.0024 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998654
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.25 E-value=0.003 Score=51.42 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998654
No 151
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.25 E-value=0.0026 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 152
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.24 E-value=0.075 Score=49.34 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+..+|.|+|.+|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999876553
No 153
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.24 E-value=0.0073 Score=51.50 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=33.4
Q ss_pred cCccccccHHHHHHHHHH---HhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVE---ALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++++|.++....+.+ .+... -.+-+.|+|+.|+|||||++.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 335677776665544443 33210 112389999999999999999998664
No 154
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.23 E-value=0.0035 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.|.|+.|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987764
No 155
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.23 E-value=0.0032 Score=54.71 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHHHhcC--CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 158 AFDSRMKVFQDVVEALKD--NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++|.......+.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467777777777766543 344567899999999999999999854
No 156
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.22 E-value=0.0032 Score=49.12 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|.|.|+.|+||||+++.+.+...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998665
No 157
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.22 E-value=0.0034 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|+.|+||||+++.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998664
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.22 E-value=0.0023 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997654
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.21 E-value=0.0032 Score=50.01 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...|.+.|+.|+||||+++.+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987654
No 160
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.20 E-value=0.0023 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999999987654
No 161
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.20 E-value=0.0033 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987654
No 162
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.19 E-value=0.0023 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~ 199 (294)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999999643
No 163
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.19 E-value=0.0055 Score=54.46 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=35.7
Q ss_pred ccccHHHHHHHHHHHhc-------------C--CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 158 AFDSRMKVFQDVVEALK-------------D--NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 158 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35788887777777662 1 1346789999999999999999998764
No 164
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.18 E-value=0.0029 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 165
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.18 E-value=0.011 Score=47.84 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=26.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE 210 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~ 210 (294)
...+|.|.|+.|+||||+++.+.+..... .++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 35689999999999999999999877642 3554
No 166
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.18 E-value=0.0018 Score=53.67 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=49.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL--NDSIFHRAHQLCQRL 254 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~L 254 (294)
...++.|+|..|+||||++-.+........ ....+ +.-.. +.. -...+.+.++..... ..+..++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli-~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLV-FKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEE-EEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEE-EEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 457889999999999999988887775432 33332 22111 111 112334444432211 123344555555555
Q ss_pred cCCCeEEEEEeCCCC
Q 022670 255 KKEKRILIILDNIWT 269 (294)
Q Consensus 255 ~~~kr~LiVlDdvw~ 269 (294)
.+++.-+||+|++..
T Consensus 86 ~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 86 FNDETKVIGIDEVQF 100 (223)
T ss_dssp SCTTCCEEEECSGGG
T ss_pred hCCCCCEEEEecCcc
Confidence 542344999999864
No 167
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.18 E-value=0.0037 Score=50.64 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..+|.|.|+.|+||||+++.+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999999987764
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.16 E-value=0.0036 Score=51.10 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 346789999999999999999998754
No 169
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.14 E-value=0.003 Score=55.16 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=25.3
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++.+||+|+|-||+||||.+.++.--...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887754
No 170
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.13 E-value=0.0037 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|+|.|+.|+||||+++.+.+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 171
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.11 E-value=0.004 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|+.|+||||+++.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0029 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998754
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.004 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+..+|+|+|+.|+|||||++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999997654
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.10 E-value=0.018 Score=61.59 Aligned_cols=85 Identities=22% Similarity=0.242 Sum_probs=57.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
..+++-|+|++|+|||+||.++....... - ..++|+.+...++... ++.++.+... +.+.++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~-G-~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-G-KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-T-CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 57889999999999999999988755422 1 2467888887776666 3444432211 123445556666
Q ss_pred HHhcCCCeEEEEEeCCC
Q 022670 252 QRLKKEKRILIILDNIW 268 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw 268 (294)
...+..+..+||+|++.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 55543378899999984
No 175
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.09 E-value=0.0044 Score=50.06 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.|.|+.|+||||+++.+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987543
No 176
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.028 Score=48.53 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999986654
No 177
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.07 E-value=0.0071 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+.++|++|+|||+||+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 178
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.07 E-value=0.0048 Score=50.04 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=26.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE 210 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~ 210 (294)
..+|.|.|+.|+||||+++.+.+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 568999999999999999999987764 24555
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.06 E-value=0.0042 Score=50.17 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.|.|+.|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998664
No 180
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.06 E-value=0.0043 Score=50.12 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+..+|+|.|+.|+||||+++.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998754
No 181
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.06 E-value=0.0027 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=18.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999987655
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.05 E-value=0.0043 Score=50.37 Aligned_cols=25 Identities=44% Similarity=0.581 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...+|+|+|+.|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999853
No 183
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.03 E-value=0.0052 Score=48.60 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++|+|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999987653
No 184
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.03 E-value=0.0026 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|+|.|..|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998765
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.03 E-value=0.0096 Score=58.39 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=56.6
Q ss_pred ccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCCh
Q 022670 156 FAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDP 222 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 222 (294)
..++.|.++.++.|.+.+.- ...+-+.++|++|+|||.||+++++..... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----c
Confidence 45566777777766665431 123457899999999999999999876532 23332 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 223 QKIQDQLASDLGMKFDLNDSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+++ ..+-. ++.. .+..+.+.-+....++|+||++...
T Consensus 545 ~~l~--------s~~vG-ese~-~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 PELL--------TMWFG-ESEA-NVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp HHHH--------TTTCS-SCHH-HHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred chhh--------ccccc-hHHH-HHHHHHHHHHHcCCceeechhhhHH
Confidence 2222 11111 3433 3444444444337899999999653
No 186
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.03 E-value=0.004 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998554
No 187
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.03 E-value=0.0037 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998754
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.00 E-value=0.0047 Score=50.66 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998654
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.97 E-value=0.004 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.97 E-value=0.014 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 191
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.95 E-value=0.047 Score=47.69 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|.|..|+|||||++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999999987654
No 192
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.95 E-value=0.005 Score=52.15 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998744
No 193
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.94 E-value=0.0094 Score=51.28 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999998754
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.93 E-value=0.0054 Score=49.79 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999997543
No 195
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.91 E-value=0.031 Score=50.06 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=63.1
Q ss_pred HHHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhc-CCCCEEEEEEcCCCCCh-HHHHHHHHHHh-CCCCCCCCC
Q 022670 167 QDVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMED-NLFDEVVMAELTQNLDP-QKIQDQLASDL-GMKFDLNDS 242 (294)
Q Consensus 167 ~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~vs~~~~~-~~~~~~i~~~~-~~~~~~~~~ 242 (294)
-+.++.+.. .+-..++|+|.+|+|||+|++.+.+..... ..+.| +++-+.+...- .++.+++...+ ....+++..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~atadep~~ 241 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERPEEVTDIRESTNAIVIAAPFDMPPD 241 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCHHHHSSSSSSCCSEEEECCTTSCHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCcchHHHHHHHhCCeEEEECCCCCHH
Confidence 356677664 356789999999999999999999866532 22444 45666653211 11111111000 011121111
Q ss_pred HH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccccCCc
Q 022670 243 IF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIGIPS 280 (294)
Q Consensus 243 ~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~~~~ 280 (294)
.. ...-.+.+++.+ ++.+||++||+..- ..+..+..+.
T Consensus 242 ~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~ 285 (427)
T 3l0o_A 242 KQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPS 285 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhc
Confidence 11 122334455542 49999999999776 4566665544
No 196
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.91 E-value=0.0048 Score=53.85 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....+++|+|..|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999986653
No 197
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.91 E-value=0.038 Score=50.63 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHH-hCC--------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASD-LGM-------------------- 235 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-~~~-------------------- 235 (294)
...++.|.|.+|+|||||+.++......... ..++|++... +..++...++.. .+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~ 278 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTM 278 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 4568999999999999999999987653211 2456665443 445555444321 111
Q ss_pred --------C----CCCCCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 236 --------K----FDLNDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 236 --------~----~~~~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
+ .....+..++...++...+..+.-+||+|.+..
T Consensus 279 a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 279 AMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 0 011135666666666655432566899998754
No 198
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.90 E-value=0.0038 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 199
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.89 E-value=0.0054 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
No 200
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.86 E-value=0.0078 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987654
No 201
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.84 E-value=0.0058 Score=50.42 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...|.|.|+.|+||||+++.+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999987553
No 202
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.84 E-value=0.0059 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...|.|.|+.|+||||+++.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998665
No 203
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.80 E-value=0.0062 Score=50.96 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|.|+.|+|||||++.+.....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999988653
No 204
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.80 E-value=0.063 Score=44.47 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+...++|.|++|+||||+|+.+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998765
No 205
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.76 E-value=0.0063 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998654
No 206
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.76 E-value=0.0062 Score=52.94 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+..+++|+|+.|+|||||++.+..-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999987554
No 207
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.75 E-value=0.0068 Score=50.96 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|.|+.|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999988655
No 208
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.74 E-value=0.0072 Score=49.80 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=24.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.++|.|.|++|+||+|.|+.+.+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999998664
No 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.74 E-value=0.0067 Score=48.85 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998754
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.74 E-value=0.006 Score=47.63 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999999865
No 211
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.72 E-value=0.0071 Score=49.29 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998665
No 212
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.72 E-value=0.0073 Score=57.59 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred cCccccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 154 KDFAAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.....++|....++.+...+... ..+.|+|+.|+||||||+.+.....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567889888888877777654 5789999999999999999998554
No 213
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.71 E-value=0.006 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=23.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998665
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.70 E-value=0.0072 Score=47.77 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|.|+.|+||||+++.+.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346789999999999999999998664
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.70 E-value=0.0065 Score=50.17 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999987654
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.67 E-value=0.039 Score=50.41 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=35.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
...++.|.|.+|+|||||+.++......... ..++|++.- .+..++...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHH
Confidence 4568999999999999999999886653211 245666554 35556666554
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.66 E-value=0.0062 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999998883
No 218
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.0045 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 219
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.62 E-value=0.0076 Score=56.06 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=35.3
Q ss_pred cccccHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|.+..++.+...+..+ ..+.++|++|+|||+||+.+.+...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35678887777777666543 4689999999999999999997553
No 220
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.59 E-value=0.0074 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+++|+|..|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988654
No 221
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.58 E-value=0.029 Score=45.50 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|.|+.|+||||+++.+.+...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998876
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.57 E-value=0.0077 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
. .+++|+|+.|+|||||.+.+.-
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 8899999999999999999985
No 223
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.57 E-value=0.0083 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 224
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.57 E-value=0.0091 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999998653
No 225
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.57 E-value=0.019 Score=47.61 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCE
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDE 210 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~ 210 (294)
....|.|.|+.|+||||+++.+.+.... .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 4568999999999999999999998764 3544
No 226
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.54 E-value=0.0092 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988654
No 227
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.53 E-value=0.0066 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 228
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.53 E-value=0.0096 Score=48.78 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..|.|.|+.|+||||+++.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998764
No 229
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.51 E-value=0.01 Score=54.18 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHHHhcC--------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALKD--------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|.++.++.|...+.. ...+-|.++|++|+||||+|+.+.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4577887777777655521 1245689999999999999999998775
No 230
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.50 E-value=0.019 Score=49.85 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987654
No 231
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.49 E-value=0.0074 Score=50.34 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999999875
No 232
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.48 E-value=0.0051 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=17.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHH-HH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVA-KQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~-~~ 201 (294)
...+++|+|+.|+|||||++.+. ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 35689999999999999999998 54
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.48 E-value=0.011 Score=46.94 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+++|+|..|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998754
No 234
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.46 E-value=0.02 Score=46.64 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCC-CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 165 VFQDVVEALKDN-KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 165 ~~~~l~~~l~~~-~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
-+..+..++..- +.+.+.|+|++|+||||+|..+++...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355566665532 245699999999999999999998764
No 235
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.46 E-value=0.0099 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
No 236
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.46 E-value=0.097 Score=48.55 Aligned_cols=90 Identities=21% Similarity=0.111 Sum_probs=55.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHh-CCCC------------------
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDL-GMKF------------------ 237 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~-~~~~------------------ 237 (294)
.-.++.|.|.+|+|||||+.++..+...... ..++|++.-. +..++...++... +.+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 4578899999999999999999887653211 2456666543 4566666554321 1111
Q ss_pred --------------CC--CCCHHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 022670 238 --------------DL--NDSIFHRAHQLCQRLKKEKRILIILDNIWT 269 (294)
Q Consensus 238 --------------~~--~~~~~~~~~~l~~~L~~~kr~LiVlDdvw~ 269 (294)
+. ..+.+++...+....+..+--+||+|-+..
T Consensus 318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 01 145566666666655432455899998754
No 237
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.44 E-value=0.01 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|+|.|+.|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987664
No 238
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.44 E-value=0.043 Score=45.33 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=31.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQL 229 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 229 (294)
.-.++.|.|.+|+|||+||.++..+...+. -..+++++.. .+...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 357889999999999999998765432111 2234555444 3455555554
No 239
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.44 E-value=0.011 Score=49.50 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=24.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.....|.|.|+.|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987653
No 240
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.41 E-value=0.007 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||++.+.--
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999865
No 241
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.39 E-value=0.012 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....|.|.|+.|+||||+|+.+.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998765
No 242
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.37 E-value=0.011 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 243
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.34 E-value=0.0078 Score=50.28 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 244
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.33 E-value=0.025 Score=50.10 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=29.1
Q ss_pred HHHHHHHhc--CCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 166 FQDVVEALK--DNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 166 ~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+++.+. ..+..+|+|+|.+|+|||||+.++.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555554 34678999999999999999999987653
No 245
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.31 E-value=0.0097 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.+.--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 246
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.29 E-value=0.013 Score=50.83 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+++|+|+.|+|||||++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987654
No 247
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.29 E-value=0.0082 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999875
No 248
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.28 E-value=0.051 Score=50.72 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHH----HhC-------
Q 022670 168 DVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLAS----DLG------- 234 (294)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~----~~~------- 234 (294)
+.++.|.. .+-..++|.|..|+|||+|++.+.+... -+.++++-+.+.. ...++++++-+ ..+
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rt 291 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERT 291 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGE
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccce
Confidence 35666553 3567789999999999999999876533 3577888888765 44566655422 011
Q ss_pred ----CCCCCCCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccccCC
Q 022670 235 ----MKFDLNDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIGIP 279 (294)
Q Consensus 235 ----~~~~~~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~~~ 279 (294)
...+++.... ...-.+.+++++ ++..||++|++..- +....+...
T Consensus 292 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~ 346 (588)
T 3mfy_A 292 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGR 346 (588)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHh
Confidence 0111111111 122334555543 49999999999754 455555433
No 249
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.26 E-value=0.024 Score=55.43 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 157 AAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
..++|.+..++.+.+.+... ....+.++|++|+|||+||+.+++.... .-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechh
Confidence 46788888888877776521 1236899999999999999999987632 123344555553
No 250
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.21 E-value=0.0091 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999885
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.21 E-value=0.0091 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.+.--
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999853
No 252
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.21 E-value=0.0078 Score=51.92 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=20.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 253
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.20 E-value=0.049 Score=45.40 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEE
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAE 215 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~ 215 (294)
...|.|.|..|+||||+++.+.+.... ..+.....+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 468999999999999999999998875 3466344443
No 254
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.20 E-value=0.011 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999873
No 255
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.19 E-value=0.0092 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.19 E-value=0.059 Score=57.70 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFD-----LNDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 251 (294)
.-+++.|+|.+|+||||||.++....... =..++|++....++... .+.++.+.. .+.+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 46789999999999999999998866532 23578888777666542 455554321 2245666666666
Q ss_pred HHhcCCCeEEEEEeCCCC
Q 022670 252 QRLKKEKRILIILDNIWT 269 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~ 269 (294)
...+..+.-|||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544332667999998854
No 257
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.17 E-value=0.023 Score=52.39 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=63.7
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCC-EEEEEEcCCCC-ChHHHHHHHHHHhCCC--------
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFD-EVVMAELTQNL-DPQKIQDQLASDLGMK-------- 236 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~~~~~-------- 236 (294)
.++.+.. .+-.-++|+|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++.+.=...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 4555543 35667899999999999995 57776542 34 34777787754 4566666665432111
Q ss_pred CCCCCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-ccccccc
Q 022670 237 FDLNDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKIG 277 (294)
Q Consensus 237 ~~~~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l~ 277 (294)
.+++.... .....+-+++++ ++..||++||+..- ..+..+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REis 274 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELS 274 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHH
Confidence 11111111 122345666654 49999999999766 4455554
No 258
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.17 E-value=0.011 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||++.+.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999874
No 259
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.15 E-value=0.011 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||++.+.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999875
No 260
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.15 E-value=0.029 Score=51.82 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++|+|..|+|||||++.+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3578999999999999999999876543
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.14 E-value=0.0084 Score=49.28 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.++--
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999753
No 262
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.14 E-value=0.013 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=22.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|+|.|+.|+||||||..+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998654
No 263
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.14 E-value=0.0097 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.14 E-value=0.011 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 457899999999999999999885
No 265
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.0098 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 266
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.12 E-value=0.069 Score=48.84 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=33.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLA 230 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 230 (294)
...++.|.|.+|+||||||.+++.+..... ..++|++.-. +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHH
Confidence 456899999999999999999988765431 3566665443 3334444433
No 267
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.12 E-value=0.013 Score=53.38 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..+|.|+|.+|+||||++..+.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 268
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.09 E-value=0.027 Score=51.41 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCC----EEEEEEcCCC-CChHHHHHHHHHH--hCC-----
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFD----EVVMAELTQN-LDPQKIQDQLASD--LGM----- 235 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~----~~~wv~vs~~-~~~~~~~~~i~~~--~~~----- 235 (294)
.++.|.. .+-.-++|.|..|+|||+|+.++.+..... -+ .++++-+.+. -...+++.++.+. +..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~--~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL--DSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCS--SCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhc--cCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 3444442 245567899999999999999999876531 23 5667777754 3456666665442 110
Q ss_pred -CCCCCCCH----HHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 236 -KFDLNDSI----FHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 236 -~~~~~~~~----~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
..+++... ....-.+.+++++ +++.||++||+..-
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 11211111 1223456777762 59999999999754
No 269
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.07 E-value=0.01 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 270
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.07 E-value=0.01 Score=50.58 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.++-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999875
No 271
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.06 E-value=0.013 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 272
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.04 E-value=0.015 Score=46.37 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.++|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 273
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.04 E-value=0.055 Score=49.61 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 161 SRMKVFQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 161 gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
+....+..+..++.+.+ ..+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45566777777776544 389999999999999999999877654
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.03 E-value=0.011 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 275
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.03 E-value=0.019 Score=49.53 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 175 DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 175 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....++|+|+|-||+||||+|.++......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 446789999999999999999999887764
No 276
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.00 E-value=0.054 Score=57.16 Aligned_cols=87 Identities=22% Similarity=0.228 Sum_probs=58.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
.-+++.|+|.+|+||||||.++....... =..++|++....++... ++.++.+... +.+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 46789999999999999999998766532 24678888877766532 4555544211 234566666665
Q ss_pred HHhcCCCeEEEEEeCCCCc
Q 022670 252 QRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~ 270 (294)
...+..+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 5543326679999998654
No 277
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.98 E-value=0.062 Score=43.99 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=33.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
..|.+.|..|+||||+++.+.+..... .+..++++.-+.....-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988754 3533333333322223344455544
No 278
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.98 E-value=0.018 Score=47.71 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999987554
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.97 E-value=0.015 Score=50.42 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=23.7
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356789999999999999999998754
No 280
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.96 E-value=0.012 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999875
No 281
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.95 E-value=0.016 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.184 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
++|.|+|+.|+||||||+.+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999997653
No 282
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.94 E-value=0.012 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999875
No 283
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.94 E-value=0.052 Score=50.14 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=63.5
Q ss_pred HHHHHhcC-CCccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCC-EEEEEEcCCCC-ChHHHHHHHHHHhCC--------
Q 022670 168 DVVEALKD-NKHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFD-EVVMAELTQNL-DPQKIQDQLASDLGM-------- 235 (294)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~~~~-------- 235 (294)
+.++.+.. .+-..++|+|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++.+.=..
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 34555543 35667899999999999995 57776442 44 35777888754 456666666542111
Q ss_pred CCCCCCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 236 KFDLNDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 236 ~~~~~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
..+++.... .....+-+++++ ++..||++||+..- ..+..+
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REi 286 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQL 286 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHH
Confidence 112211111 123345666654 49999999999766 444444
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.93 E-value=0.019 Score=51.06 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+++|+|..|+|||||++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3568999999999999999999876543
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.93 E-value=0.015 Score=49.24 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|+|+.|+|||||++.+..-..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4567899999999999999999887543
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.93 E-value=0.015 Score=49.55 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.-.++.|+|.+|+|||||+..+.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999987554
No 287
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.92 E-value=0.012 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999875
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.89 E-value=0.012 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999853
No 289
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.87 E-value=0.026 Score=52.45 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHHhc--CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 159 FDSRMKVFQDVVEALK--DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 159 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+.+..+.+.+... .....+|.+.|+.|+||||+|+.+......
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3445555566666552 235678999999999999999999998874
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.85 E-value=0.016 Score=49.76 Aligned_cols=39 Identities=33% Similarity=0.265 Sum_probs=28.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEc
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAEL 216 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~v 216 (294)
.-.+++|+|.+|+|||||++.+......... ..++|+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeC
Confidence 4578999999999999999999886654311 13455543
No 291
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.85 E-value=0.072 Score=49.21 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=64.9
Q ss_pred HHHHHhcC-CCccEEEEEecCCCcHHHH-HHHHHHHhhh----cCCCC-EEEEEEcCCCC-ChHHHHHHHHHHhCC----
Q 022670 168 DVVEALKD-NKHNIIGVYEMGGVGKTTL-VKQVAKQVME----DNLFD-EVVMAELTQNL-DPQKIQDQLASDLGM---- 235 (294)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~gG~GKTtL-a~~v~~~~~~----~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~~~~---- 235 (294)
+.++.|.. .+-.-++|+|..|+|||+| +..+.+.... .++-+ .++++-+.+.. ...++.+++...=..
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34555553 3566789999999999999 5577765542 12233 46778888754 456666666542111
Q ss_pred ----CCCCCCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc-cccccc
Q 022670 236 ----KFDLNDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK-LEFDKI 276 (294)
Q Consensus 236 ----~~~~~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~-~~w~~l 276 (294)
..+++.... .....+-+++++ ++..||++||+..- ..+..+
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REi 281 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQM 281 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHH
Confidence 112111111 123345666654 49999999999765 344444
No 292
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.84 E-value=0.017 Score=49.17 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999754
No 293
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.83 E-value=0.1 Score=48.93 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred HHHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHH----HhCCCC----
Q 022670 168 DVVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLAS----DLGMKF---- 237 (294)
Q Consensus 168 ~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~----~~~~~~---- 237 (294)
+.++.|.. .+-..++|.|..|+|||+|++.+.+... -+.++++-+.+. ....+++.++-+ ..+...
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rt 296 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERT 296 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGE
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccce
Confidence 35666654 3567899999999999999999987543 356788888765 344455544321 011000
Q ss_pred -----CCCCCHH------HHHHHHHHHhcC-CCeEEEEEeCCCC
Q 022670 238 -----DLNDSIF------HRAHQLCQRLKK-EKRILIILDNIWT 269 (294)
Q Consensus 238 -----~~~~~~~------~~~~~l~~~L~~-~kr~LiVlDdvw~ 269 (294)
..+++.. ...-.+.+++++ ++.+||++|++..
T Consensus 297 vvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 297 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 0011111 123345666654 4999999999963
No 294
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.80 E-value=0.021 Score=47.82 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++.+.|.||+|||||+.++.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56778899999999999999987665
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.77 E-value=0.017 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45799999999999999999874
No 296
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.76 E-value=0.078 Score=42.76 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLCQRL 254 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~~~L 254 (294)
-|+|=|.-|+||||.++.+++...... +. ++++.-+.....-+.+++++..-...... ..+-.+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999887542 33 33343333333344444444321111000 000122345566667
Q ss_pred cCCCeEEEEEeCCC
Q 022670 255 KKEKRILIILDNIW 268 (294)
Q Consensus 255 ~~~kr~LiVlDdvw 268 (294)
.. . ..||.|--.
T Consensus 80 ~~-g-~~Vi~DRy~ 91 (197)
T 3hjn_A 80 SE-G-YAVLLDRYT 91 (197)
T ss_dssp TT-T-CEEEEESCH
T ss_pred HC-C-CeEEecccc
Confidence 65 3 356777543
No 297
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.75 E-value=0.021 Score=52.35 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=66.8
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCC--CEEEEEEcCCCC-ChHHHHHHHHHHhCC--------C
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLF--DEVVMAELTQNL-DPQKIQDQLASDLGM--------K 236 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv~vs~~~-~~~~~~~~i~~~~~~--------~ 236 (294)
.++.|.. .+-.-++|.|..|+|||+|++++.........= +.++++-+.+.. ...+++.++...=.. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555443 245667899999999999999999876642111 356677777653 456667666543111 1
Q ss_pred CCCCCCH----HHHHHHHHHHhc--CCCeEEEEEeCCCCc-cccccccCC
Q 022670 237 FDLNDSI----FHRAHQLCQRLK--KEKRILIILDNIWTK-LEFDKIGIP 279 (294)
Q Consensus 237 ~~~~~~~----~~~~~~l~~~L~--~~kr~LiVlDdvw~~-~~w~~l~~~ 279 (294)
.+++... ....-.+.++++ .++..||++||+..- .....+..+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~ 271 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAA 271 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHh
Confidence 1211111 123344667776 159999999998665 344554433
No 298
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.74 E-value=0.046 Score=45.13 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=35.3
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLAS 231 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 231 (294)
.....|.|.|..|+||||+++.+.+.......+.+.....-+.....-+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 35678999999999999999999998765112444332322322222344555554
No 299
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.74 E-value=0.018 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 456899999999999999999985
No 300
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.73 E-value=0.023 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...|.|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998763
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.71 E-value=0.02 Score=43.68 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.|.++|.+|+|||||.+.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998643
No 302
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.71 E-value=0.022 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..|.|+|.+|+|||||.+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998764
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.70 E-value=0.027 Score=49.22 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
..++|+|+|.+|+||||++..+......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999876653
No 304
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.66 E-value=0.02 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 305
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.60 E-value=0.016 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
-.+++|+|+.|+|||||.+.+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999985
No 306
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.58 E-value=0.082 Score=43.24 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=26.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEE
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEV 211 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~ 211 (294)
...|.|.|+.|+||||+++.+.+..... .+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcc
Confidence 4578999999999999999999988653 35553
No 307
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.57 E-value=0.059 Score=45.68 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCC--CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 164 KVFQDVVEALKDN--KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 164 ~~~~~l~~~l~~~--~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.....+..|+... +.+-+.++|++|+|||++|.++.+.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3455677787754 3567999999999999999999985
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.56 E-value=0.022 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||.+.+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998743
No 309
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.54 E-value=0.018 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~ 200 (294)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 310
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.53 E-value=0.014 Score=50.62 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 567899999999999999999875
No 311
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.53 E-value=0.02 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999985
No 312
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.53 E-value=0.024 Score=50.70 Aligned_cols=27 Identities=22% Similarity=0.054 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...++++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999999754
No 313
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.53 E-value=0.084 Score=48.65 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=58.9
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCCEEEEEEcCCCC-ChHHHHHHHHHHhCCC--------C
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFDEVVMAELTQNL-DPQKIQDQLASDLGMK--------F 237 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~~~~~--------~ 237 (294)
.++.|.. .+-.-++|.|..|+|||+|+ ..+.+.. ..-..++++-+.+.. ...++.+++.+.=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 4555543 35567899999999999996 5666532 212245788888764 4566666654431111 1
Q ss_pred CCCCCHH----HHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 238 DLNDSIF----HRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 238 ~~~~~~~----~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
+++.... .....+-+++++ ++..||++||+..-
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 1111111 122334555543 49999999999765
No 314
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.51 E-value=0.062 Score=44.34 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=24.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|+|.|+.|+||||+++.+.+...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998776
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.50 E-value=0.021 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||.+.+.--
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4578999999999999999999853
No 316
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.48 E-value=0.065 Score=48.87 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=61.1
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhc--------CCCC-EEEEEEcCCC-CChHHHHHHHHHH--hC-
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMED--------NLFD-EVVMAELTQN-LDPQKIQDQLASD--LG- 234 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--------~~f~-~~~wv~vs~~-~~~~~~~~~i~~~--~~- 234 (294)
.++.|.. .+-.-++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+. -...+++.++.+. +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 3444443 245667999999999999999998866531 1111 5567777754 3456666665432 11
Q ss_pred -----CCCCCCCCH----HHHHHHHHHHhcC--CCeEEEEEeCCCCc
Q 022670 235 -----MKFDLNDSI----FHRAHQLCQRLKK--EKRILIILDNIWTK 270 (294)
Q Consensus 235 -----~~~~~~~~~----~~~~~~l~~~L~~--~kr~LiVlDdvw~~ 270 (294)
...+++... ....-.+.+++++ +++.||++||+..-
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 011221111 1233456777762 59999999999754
No 317
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.48 E-value=0.016 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356889999999999999999998654
No 318
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.46 E-value=0.025 Score=44.64 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.1
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.+.+|+|..|+|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 319
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.45 E-value=0.015 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998764
No 320
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.42 E-value=0.033 Score=46.88 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=22.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|.|-||+||||+|.++......
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 57888999999999999999987764
No 321
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.41 E-value=0.037 Score=52.04 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+..++.|+|+.|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999998775
No 322
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.41 E-value=0.027 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.++|.|+|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999998644
No 323
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.41 E-value=0.053 Score=42.71 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 167 QDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 167 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..+.+ +...+.-.|.|+|..|+|||||.+.+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 34455667899999999999999999853
No 324
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.40 E-value=0.022 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 456899999999999999999985
No 325
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.40 E-value=0.026 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 456899999999999999999985
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.39 E-value=0.023 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 456899999999999999999985
No 327
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.39 E-value=0.024 Score=44.75 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.|.++|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998653
No 328
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.36 E-value=0.023 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 467899999999999999999885
No 329
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.35 E-value=0.023 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 456899999999999999999985
No 330
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.33 E-value=0.026 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..|+|+|..|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 331
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.33 E-value=0.026 Score=43.17 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||.+.+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 357899999999999999998643
No 332
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.32 E-value=0.024 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 456899999999999999999985
No 333
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.32 E-value=0.023 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999644
No 334
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.31 E-value=0.032 Score=43.59 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=24.2
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHH
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
+.+.+.. .+...|.|+|..|+|||||...+..
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3443334 4566789999999999999998874
No 335
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.30 E-value=0.03 Score=51.71 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=53.7
Q ss_pred CccEEEEEecCCCcHHHHH-HHHHHHhhhcCCCC-EEEEEEcCCCC-ChHHHHHHHHHHhCC--------CCCCCCC---
Q 022670 177 KHNIIGVYEMGGVGKTTLV-KQVAKQVMEDNLFD-EVVMAELTQNL-DPQKIQDQLASDLGM--------KFDLNDS--- 242 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~~~~--------~~~~~~~--- 242 (294)
+-.-++|+|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++...=.. ..+++..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4566899999999999995 57776442 34 45777787654 345555555432100 1121111
Q ss_pred -HHHHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 243 -IFHRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 243 -~~~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
.......+-+++++ ++..||++||+..-
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 12233444555542 49999999998655
No 336
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.026 Score=44.68 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 337
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.26 E-value=0.03 Score=48.62 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..++|.|+|+.|+||||||..+.+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999999764
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.22 E-value=0.029 Score=43.02 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|.+|+|||||.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.20 E-value=0.024 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...++|+|..|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987543
No 340
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.19 E-value=0.031 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 022670 181 IGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~~~ 202 (294)
|.|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 341
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.17 E-value=0.03 Score=42.81 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
-|.|+|..|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.17 E-value=0.03 Score=43.13 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-.|.|+|.+|+|||||.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 343
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.16 E-value=0.034 Score=44.75 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 171 EALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 171 ~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
++....+.-.|.|+|..|+|||||...+.+..
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33333445567999999999999999888643
No 344
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.16 E-value=0.024 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 456899999999999999999985
No 345
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.15 E-value=0.028 Score=43.53 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|.+|+|||||.+.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999998753
No 346
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.14 E-value=0.028 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999987543
No 347
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.14 E-value=0.029 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 348
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.14 E-value=0.025 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...+++|.|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999864
No 349
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.13 E-value=0.04 Score=48.85 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=23.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|+|+.|+|||||.+.+.....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3445999999999999999999987554
No 350
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.13 E-value=0.03 Score=42.94 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
-|.|+|..|+|||||.+.+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988644
No 351
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.12 E-value=0.042 Score=49.75 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 556899999999999999999987
No 352
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.09 E-value=0.044 Score=43.10 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....|.|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4566899999999999999998753
No 353
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.07 E-value=0.043 Score=46.85 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.++|+|.|-||+||||+|.++......
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 367888999999999999999987754
No 354
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.07 E-value=0.033 Score=43.86 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=20.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|.+|+|||||.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999874
No 355
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.07 E-value=0.032 Score=42.90 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
-|.|+|..|+|||||.+.+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 356
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.06 E-value=0.033 Score=43.28 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...|.|+|..|+|||||.+.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.06 E-value=0.03 Score=43.00 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~ 200 (294)
-|.|+|.+|+|||||.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 358
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.05 E-value=0.031 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 467899999999999999999984
No 359
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.05 E-value=0.033 Score=55.29 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=36.6
Q ss_pred cccccHHHHHHHHHHHhcCC---------CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 157 AAFDSRMKVFQDVVEALKDN---------KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++|.+..+..+...+... ....+.|+|+.|+|||+||+.+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688888887777766421 135789999999999999999998763
No 360
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.03 E-value=0.066 Score=52.29 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=40.3
Q ss_pred cccccHHHHHHHHHHHhcC---------CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCC
Q 022670 157 AAFDSRMKVFQDVVEALKD---------NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQ 218 (294)
Q Consensus 157 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 218 (294)
..++|.+..++.+...+.. .....+.++|++|+|||+||+.+.+... ...+.+.++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechh
Confidence 3567888887777776542 1234789999999999999999998773 2334455553
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.02 E-value=0.032 Score=43.37 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..-.|.|+|..|+|||||.+.+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999988643
No 362
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.031 Score=42.99 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 363
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.99 E-value=0.018 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999985
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.99 E-value=0.033 Score=44.02 Aligned_cols=23 Identities=35% Similarity=0.245 Sum_probs=19.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|.+|+|||||.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 35799999999999999777653
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.99 E-value=0.035 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|..|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998853
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.98 E-value=0.032 Score=42.98 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~ 199 (294)
-|.|+|.+|+|||||...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999885
No 367
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.98 E-value=0.034 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|.+|+|||||.+.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45799999999999999999864
No 368
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.97 E-value=0.054 Score=43.33 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
+...|+++|.+|+|||||.+.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344589999999999999998864
No 369
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.96 E-value=0.072 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+..+|+|+|.+|+|||||.+.+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 370
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.95 E-value=0.034 Score=42.62 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|..|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.95 E-value=0.042 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....|.|+|.+|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 372
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.93 E-value=0.052 Score=46.94 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 166 FQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
++.|.+.+. -.+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345555543 4588999999999999999998 44
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.90 E-value=0.035 Score=43.91 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457999999999999998877643
No 374
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.89 E-value=1 Score=39.51 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....++|+|..|+|||||.+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 375
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.86 E-value=0.036 Score=42.95 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.|.|+|..|+|||||.+.+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458999999999999999998744
No 376
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.86 E-value=0.19 Score=53.09 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=60.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKFDL-----NDSIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~ 251 (294)
+-++|-|+|+.|+||||||-++....... =..++|+...+.+++.- ++.++.+.+. +.+-++.+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 45899999999999999999888644322 24578888777777664 6666665432 234455566666
Q ss_pred HHhcCCCeEEEEEeCCCC
Q 022670 252 QRLKKEKRILIILDNIWT 269 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~ 269 (294)
..++.+.--+||+|-|-.
T Consensus 1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHcCCCCEEEEccHHh
Confidence 667655777999998844
No 377
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.84 E-value=0.055 Score=49.06 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.3
Q ss_pred HHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 168 DVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 168 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+.+.+ .....+++|+|+.|+|||||.+.+.....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344443 35667899999999999999999987654
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.83 E-value=0.087 Score=43.55 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
....|.|.|+.|+||||+++.+.+....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567999999999999999999998764
No 379
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.83 E-value=0.044 Score=43.34 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
+...|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998753
No 380
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.80 E-value=0.039 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...|+|+|.+|+|||||.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998863
No 381
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.80 E-value=0.038 Score=42.53 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999764
No 382
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.79 E-value=0.032 Score=48.25 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.2
Q ss_pred EEEEecCCCcHHHHHHHHHH
Q 022670 181 IGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~ 200 (294)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999774
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.79 E-value=0.04 Score=43.19 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||.+.+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998644
No 384
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.77 E-value=0.045 Score=51.13 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.++|++|+||||+|+.+......
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999887653
No 385
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.75 E-value=0.048 Score=42.32 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998763
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.74 E-value=0.045 Score=48.85 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
....+++|+|+.|+|||||++.+.....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999987544
No 387
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.73 E-value=0.061 Score=42.86 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=20.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.++.|+|..|+||||++..+.....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999966665543
No 388
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.73 E-value=0.044 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+|.|.|+.|+||||||..+.....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999997654
No 389
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.73 E-value=0.039 Score=43.25 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
-|.|+|..|+|||||.+.+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998644
No 390
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.73 E-value=0.17 Score=41.64 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=49.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH-HhhhcCCC-CEEEEEEcCCCCChHHHHHHHHHHhCCCCC---------------CC
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK-QVMEDNLF-DEVVMAELTQNLDPQKIQDQLASDLGMKFD---------------LN 240 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~-~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---------------~~ 240 (294)
.+.+.|+|..|+||||+.....- ........ .+.+.+..+.......+...+...++.... ..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH 155 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSS
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCC
Confidence 36789999999999987665543 33222222 234444444333344455555544432210 00
Q ss_pred -----CCHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Q 022670 241 -----DSIFHRAHQLCQRLKKEKRILIILDNIWTK 270 (294)
Q Consensus 241 -----~~~~~~~~~l~~~L~~~kr~LiVlDdvw~~ 270 (294)
.+...+...+...+++ --+||+|+++..
T Consensus 156 ~~Ivv~Tpg~l~~~l~~~l~~--~~~lVlDEah~~ 188 (235)
T 3llm_A 156 ASIMFCTVGVLLRKLEAGIRG--ISHVIVDEIHER 188 (235)
T ss_dssp SEEEEEEHHHHHHHHHHCCTT--CCEEEECCTTSC
T ss_pred CeEEEECHHHHHHHHHhhhcC--CcEEEEECCccC
Confidence 1234445555554544 457899999873
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.73 E-value=0.032 Score=49.57 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=51.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC--CCCC---CHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF--DLND---SIFHRAHQLC 251 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~--~~~~---~~~~~~~~l~ 251 (294)
...+++|+|..|+|||||++.+..-... -...+.+.-......... + +.+..-. .... ........+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie~~~e~~~~~~-~---~~v~~v~~q~~~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIEDVPELFLPDH-P---NHVHLFYPSEAKEEENAPVTAATLLR 246 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEESSSCCCCTTC-S---SEEEEECC----------CCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEECCccccCcccc-C---CEEEEeecCccccccccccCHHHHHH
Confidence 4568999999999999999999864332 234444432111111000 0 0000000 0000 1112345566
Q ss_pred HHhcCCCeEEEEEeCCCCccccccccCCcCCCCC
Q 022670 252 QRLKKEKRILIILDNIWTKLEFDKIGIPSGNKDE 285 (294)
Q Consensus 252 ~~L~~~kr~LiVlDdvw~~~~w~~l~~~~~~~~~ 285 (294)
..+.. ..-.+++|++...+.++.| .++|.++.
T Consensus 247 ~~l~~-~pd~~l~~e~r~~~~~~~l-~~l~~g~~ 278 (361)
T 2gza_A 247 SCLRM-KPTRILLAELRGGEAYDFI-NVAASGHG 278 (361)
T ss_dssp HHTTS-CCSEEEESCCCSTHHHHHH-HHHHTTCC
T ss_pred HHHhc-CCCEEEEcCchHHHHHHHH-HHHhcCCC
Confidence 66665 5556778888776655543 34555443
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.72 E-value=0.044 Score=43.38 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||.+.+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 347999999999999999998755
No 393
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.72 E-value=0.042 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|..|+|||||...+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 394
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.70 E-value=0.04 Score=43.09 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|..|+|||||.+.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345799999999999999999864
No 395
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.70 E-value=0.022 Score=45.87 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHH
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.....|+|+|..|+|||||.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999998764
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.69 E-value=0.04 Score=43.30 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|..|+|||||...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999864
No 397
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.67 E-value=0.083 Score=43.60 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhc
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMED 205 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~ 205 (294)
.|+|.|-||+||||+|.++.......
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 47779999999999999999877643
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.67 E-value=0.041 Score=43.57 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.--|.|+|.+|+|||||...+....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3457999999999999999888643
No 399
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.66 E-value=0.041 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 400
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.65 E-value=0.15 Score=56.20 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHHHHHHHHHHhCCCC----------CCCCCHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQKIQDQLASDLGMKF----------DLNDSIFHRAH 248 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~ 248 (294)
+.+.++|++|+|||++|+.+...... ...+.++.+...+...+++.+-..+.... +.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~----~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~--------- 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL----YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD--------- 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS----CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS---------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC----CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC---------
Q ss_pred HHHHHhcCCCeEEEEEeCCC
Q 022670 249 QLCQRLKKEKRILIILDNIW 268 (294)
Q Consensus 249 ~l~~~L~~~kr~LiVlDdvw 268 (294)
+|+++|.+||+.
T Consensus 1335 --------gk~~VlFiDEin 1346 (2695)
T 4akg_A 1335 --------IKNLVLFCDEIN 1346 (2695)
T ss_dssp --------SSCEEEEEETTT
T ss_pred --------CceEEEEecccc
No 401
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.65 E-value=0.044 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+..+++|+|..|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4678899999999999999999986543
No 402
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.62 E-value=0.037 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|..|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345799999999999999998753
No 403
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.61 E-value=0.042 Score=42.90 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.--|.|+|..|+|||||.+.+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3458999999999999999998643
No 404
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.61 E-value=0.044 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.8
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+-.+++|+|..|+|||||.+.+.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567899999999999999999998754
No 405
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.60 E-value=0.045 Score=42.71 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
...|.|+|..|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998543
No 406
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.60 E-value=0.042 Score=43.51 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||.+.+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999988743
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.59 E-value=0.043 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||.+.+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998643
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.051 Score=43.21 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..--|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456899999999999999999874
No 409
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.56 E-value=0.035 Score=43.09 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=19.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|.+|+|||||.+.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 34789999999999999998753
No 410
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.55 E-value=0.054 Score=42.63 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....|.|+|..|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34568999999999999999998653
No 411
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.55 E-value=0.063 Score=44.37 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=24.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhcCCCCEE
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEV 211 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~ 211 (294)
.|.+.|.||+||||+|-++....... .++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEE
Confidence 47788999999999999988877643 34443
No 412
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.53 E-value=0.045 Score=42.78 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|.+|+|||||...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 413
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.50 E-value=0.046 Score=42.62 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988753
No 414
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.046 Score=42.52 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999988644
No 415
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.49 E-value=0.048 Score=43.27 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.--|+|+|..|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998644
No 416
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.46 E-value=0.046 Score=43.62 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.|.|+|..|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4468999999999999999988643
No 417
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.45 E-value=0.034 Score=43.28 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.++|.+|+|||||.+.+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998874
No 418
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.44 E-value=0.049 Score=43.56 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+.--|.|+|.+|+|||||.+.+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999998744
No 419
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.42 E-value=0.047 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|+|+|..|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999875
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.41 E-value=0.047 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.|.|+|.+|+|||||.+.+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4468999999999999999998644
No 421
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.40 E-value=0.055 Score=47.80 Aligned_cols=31 Identities=39% Similarity=0.393 Sum_probs=25.6
Q ss_pred hcCCCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 173 LKDNKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 173 l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
+.....+++.+.|.||+||||+|.++.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3345678899999999999999999887655
No 422
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.39 E-value=0.034 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~ 199 (294)
.-.|.|+|.+|+|||||.+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999884
No 423
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.38 E-value=0.023 Score=47.97 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+...|.|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998654
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.051 Score=43.77 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|..|+|||||.+.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345799999999999999998764
No 425
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.051 Score=43.07 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=20.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|.+|+|||||.+.+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 345899999999999999999863
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.37 E-value=0.05 Score=43.89 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|.+|+|||||.+.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345799999999999999999874
No 427
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.36 E-value=0.054 Score=47.65 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
.+..+|+|+|.+|+|||||+..+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999976543
No 428
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.32 E-value=0.05 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||.+.+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 457999999999999999998643
No 429
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.31 E-value=0.054 Score=43.15 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
--|.|+|.+|+|||||.+.+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998874
No 430
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.29 E-value=0.053 Score=49.91 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.++|++|+||||+++.+.....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999998765
No 431
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.29 E-value=0.072 Score=43.16 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=23.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....+|+|+|+.|+||+|+|..+.+..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356799999999999999999987644
No 432
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.28 E-value=0.077 Score=45.78 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 166 FQDVVEALKDNKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 166 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
++++.+++. -.+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccc
Confidence 344555543 458899999999999999999753
No 433
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.28 E-value=0.042 Score=43.74 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHHH
Q 022670 175 DNKHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 175 ~~~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
..+.--|.|+|.+|+|||||...+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34455689999999999999999864
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.045 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|..|+|||||++.++.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5678999999999999999999873
No 435
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.26 E-value=0.052 Score=42.91 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||.+.+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998744
No 436
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.25 E-value=0.051 Score=43.81 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
....|.|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998744
No 437
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.22 E-value=0.053 Score=42.98 Aligned_cols=25 Identities=36% Similarity=0.276 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.--|.|+|..|+|||||.+.+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 438
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.20 E-value=0.054 Score=42.74 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998644
No 439
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.17 E-value=0.025 Score=53.83 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+.++|.+|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58999999999999999998643
No 440
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.16 E-value=0.054 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 022670 180 IIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 180 vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-|.|+|..|+|||||...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 441
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.16 E-value=0.035 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..+++|+|..|+|||||++.+..-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 442
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.15 E-value=0.055 Score=42.66 Aligned_cols=25 Identities=28% Similarity=0.104 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.--|.|+|..|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4468999999999999999988643
No 443
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.14 E-value=0.06 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999754
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.11 E-value=0.034 Score=54.83 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=35.5
Q ss_pred ccccccHHHHHHHHHHHhcC-------------CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 156 FAAFDSRMKVFQDVVEALKD-------------NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..++.|.+..++.|.+.+.- .....+.++|++|+||||||+.++....
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 45566766666666665431 1245688999999999999999999875
No 445
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.09 E-value=0.046 Score=43.57 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.--|.|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44589999999999999987665
No 446
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.09 E-value=0.054 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-.+++|+|+.|+|||||.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 358999999999999999999853
No 447
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.06 E-value=0.17 Score=44.38 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=25.5
Q ss_pred hcCCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 173 LKDNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 173 l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
+.....+++.+.|-||+||||+|.++......
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 33445678888899999999999999876653
No 448
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.06 E-value=0.059 Score=49.21 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
..-..++|+|..|+|||||++.+.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567899999999999999999998654
No 449
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.06 E-value=0.06 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457999999999999999998643
No 450
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.058 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
-.|.|+|..|+|||||...+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357999999999999999998743
No 451
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.05 E-value=0.053 Score=44.87 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4556899999999999999998863
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.03 E-value=0.058 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..--|.|+|..|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998753
No 453
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.01 E-value=0.047 Score=49.58 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHHH
Q 022670 181 IGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 181 i~I~G~gG~GKTtLa~~v~~ 200 (294)
++|+|..|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999975
No 454
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.00 E-value=0.081 Score=50.00 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=24.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...+|.|.|+.|+||||+|+.+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999987664
No 455
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.062 Score=43.19 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..-|.|+|..|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 345899999999999999998863
No 456
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.00 E-value=0.056 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
...|+|+|.+|+|||||.+.+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999864
No 457
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.98 E-value=0.056 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999988643
No 458
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.98 E-value=0.12 Score=48.56 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhc--CCCccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 161 SRMKVFQDVVEALK--DNKHNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 161 gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
.|.+....+.+... .....+|.+.|+.|+||||+|+.+......
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34444555666552 234578999999999999999999987654
No 459
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.94 E-value=0.074 Score=42.54 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=21.9
Q ss_pred cEEEEE-ecCCCcHHHHHHHHHHHhhh
Q 022670 179 NIIGVY-EMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 179 ~vi~I~-G~gG~GKTtLa~~v~~~~~~ 204 (294)
++|+|+ +-||+||||++.++......
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR 28 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 578888 67999999999999887664
No 460
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.92 E-value=0.066 Score=41.98 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 176 NKHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 176 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+.-.|.|+|.+|+|||||.+.+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445668999999999999999988644
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.92 E-value=0.12 Score=41.92 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEE
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEV 211 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~ 211 (294)
+-|+|-|.-|+||||+++.+.+... ..++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCEE
Confidence 3578889999999999999999885 235543
No 462
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.88 E-value=0.062 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=19.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|..|+|||||.+.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998753
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.068 Score=42.28 Aligned_cols=23 Identities=35% Similarity=0.276 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|..|+|||||.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 464
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.83 E-value=0.18 Score=40.86 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=28.4
Q ss_pred cEEEEE-ecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCCCChHH
Q 022670 179 NIIGVY-EMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQNLDPQK 224 (294)
Q Consensus 179 ~vi~I~-G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 224 (294)
++|+|+ +-||+||||++.++........ .++.+..-...+...
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATG 44 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHH
Confidence 367776 7799999999999998776432 344454443334443
No 465
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.79 E-value=0.074 Score=50.67 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=24.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHhh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQVM 203 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 203 (294)
...+|.|.|+.|+||||+|+.+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 466
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.79 E-value=0.09 Score=49.04 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHhcC-CCccEEEEEecCCCcHHHHHHHHHHHhhhcCCCCEEEEEEcCCC-CChHHHHHHHHH----HhCCCC-----
Q 022670 169 VVEALKD-NKHNIIGVYEMGGVGKTTLVKQVAKQVMEDNLFDEVVMAELTQN-LDPQKIQDQLAS----DLGMKF----- 237 (294)
Q Consensus 169 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~----~~~~~~----- 237 (294)
.++.|.. .+-..++|.|..|+|||+|++.+.+... -+.++++-+.+. ....+++.++-+ ..+...
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtv 286 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTV 286 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEE
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 4555543 2567789999999999999999987543 356778888765 233444443321 011000
Q ss_pred ----CCCCCH--H----HHHHHHHHHhcC-CCeEEEEEeCCCCc
Q 022670 238 ----DLNDSI--F----HRAHQLCQRLKK-EKRILIILDNIWTK 270 (294)
Q Consensus 238 ----~~~~~~--~----~~~~~l~~~L~~-~kr~LiVlDdvw~~ 270 (294)
..+++. . ...-.+.+++++ ++..||++|++..-
T Consensus 287 vv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~ 330 (578)
T 3gqb_A 287 LIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRW 330 (578)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHH
Confidence 001111 1 122334555542 49999999999643
No 467
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.78 E-value=0.089 Score=43.16 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHhhh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 204 (294)
...|.+-|..|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467999999999999999999998764
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.77 E-value=0.054 Score=43.84 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
-+.|.|.|..|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4668999999999999999998643
No 469
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.76 E-value=0.067 Score=42.93 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 470
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.75 E-value=0.071 Score=42.61 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
..-|.|+|..|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3458999999999999999988643
No 471
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.74 E-value=0.062 Score=49.58 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=22.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.+++|+|+.|+|||||.+.+.--.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 789999999999999999998654
No 472
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.74 E-value=0.071 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|..|+|||||...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 345899999999999999998753
No 473
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.71 E-value=0.065 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
-.|.|+|..|+|||||.+.+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45799999999999999999853
No 474
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.70 E-value=0.065 Score=42.66 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|..|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999988754
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.70 E-value=0.061 Score=42.59 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....|.|+|..|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998753
No 476
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.68 E-value=0.068 Score=43.28 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.--|.|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999998753
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.65 E-value=0.074 Score=42.76 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||...+....
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457999999999999999988643
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.65 E-value=0.063 Score=50.34 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.+++|+|+.|+|||||++.++--.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999643
No 479
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.61 E-value=0.064 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||++.+.-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999885
No 480
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.58 E-value=0.13 Score=46.78 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHhcCC-----------CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 161 SRMKVFQDVVEALKDN-----------KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 161 gr~~~~~~l~~~l~~~-----------~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
|.++.++.+.+.+... ....++|+|.+|+|||||.+.+....
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4566666676665411 23478999999999999999998643
No 481
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.069 Score=43.53 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVA 199 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~ 199 (294)
.--|.|+|.+|+|||||...+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999886
No 482
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.54 E-value=0.066 Score=42.46 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|..|+|||||.+.+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999987543
No 483
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.52 E-value=0.057 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||++.++--
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999863
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.52 E-value=0.04 Score=43.11 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=9.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
--|.|+|..|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999988754
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.45 E-value=0.077 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHHHh
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
--|.|+|.+|+|||||...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999988643
No 486
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.44 E-value=0.17 Score=43.02 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHhcC------CCccEEEEEecCCCcHHHHHHHHHHH
Q 022670 165 VFQDVVEALKD------NKHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 165 ~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.++.+.+.|.. .....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 34556555543 23557999999999999999999853
No 487
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.43 E-value=0.088 Score=43.06 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
+...|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 488
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.32 E-value=0.078 Score=44.37 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999753
No 489
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.26 E-value=0.065 Score=42.29 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.|.|+|..|+|||||.+.+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457999999999999999988654
No 490
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.25 E-value=0.093 Score=40.23 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
..+..|+|+.|+|||||..+++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998753
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.19 E-value=0.066 Score=50.22 Aligned_cols=24 Identities=46% Similarity=0.699 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999998875
No 492
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.18 E-value=0.12 Score=42.59 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=23.2
Q ss_pred CccEEEEEe-cCCCcHHHHHHHHHHHhhh
Q 022670 177 KHNIIGVYE-MGGVGKTTLVKQVAKQVME 204 (294)
Q Consensus 177 ~~~vi~I~G-~gG~GKTtLa~~v~~~~~~ 204 (294)
..++|+|++ -||+||||+|.++......
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 31 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ 31 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh
Confidence 457888884 5899999999999987764
No 493
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.12 E-value=0.039 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHHH
Q 022670 178 HNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 178 ~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
-.+++|+|+.|+|||||.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 46899999999999999998864
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.08 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
.-.+++|+|+.|+|||||.+.+.-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 467899999999999999999875
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.12 E-value=0.08 Score=50.39 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=22.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
.-.+++|+|+.|+|||||++.+.--.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999643
No 496
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.09 E-value=0.083 Score=42.63 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAK 200 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~ 200 (294)
--|.|+|..|+|||||.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4589999999999999999875
No 497
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.09 E-value=0.089 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
+.|+++|.+|+|||||.+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 498
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.09 E-value=0.17 Score=42.50 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHHh
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQV 202 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 202 (294)
+.-.|+|+|..|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999998644
No 499
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.08 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHHH
Q 022670 179 NIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 179 ~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.+++|+|+.|+|||||++.+.--
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 67999999999999999999863
No 500
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.05 E-value=0.086 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHHHH
Q 022670 177 KHNIIGVYEMGGVGKTTLVKQVAKQ 201 (294)
Q Consensus 177 ~~~vi~I~G~gG~GKTtLa~~v~~~ 201 (294)
.-.+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999998753
Done!