BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022672
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 145/257 (56%), Gaps = 21/257 (8%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 59
AVGY+N+D+ A K GI V NTP V R +V+ D F+R+G +
Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 60 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
W P F+G + G+T+G+IG GRIG A A+ +GF M ++YY + +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELNA 193
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
+F ++++LRE+D + L L + TYHLIN+ERL MKK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
N +RG V+D ALV+ LK+ + GLDVFE+EPY L ++ N ++ PHI SAS R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 238 EGMATLAALNVLGKIKG 254
EGMA L A N++ +G
Sbjct: 298 EGMAELVAKNLIAFKRG 314
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 142/257 (55%), Gaps = 21/257 (8%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 59
AVGY+N+D+ A K GI V NTP V R +V+ D F+R+G +
Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 60 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
W P F+G + G+T+G+IG GRIG A A+ +GF ++YY + +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
+F ++++LRE+D + L L + TYHLIN+ERL KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
N +RG V+D ALV+ LK+ + GLDVFE+EPY L ++ N ++ PHI SAS R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 238 EGMATLAALNVLGKIKG 254
EG A L A N++ +G
Sbjct: 298 EGXAELVAKNLIAFKRG 314
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 145/255 (56%), Gaps = 26/255 (10%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
+VG ++VD+ AA + GI V +TPGV RR+VE + R GL+ W
Sbjct: 73 SVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW 132
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
P L +G L+G T+G++G GRIG A A+ + F M ++Y+
Sbjct: 133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH------------------ 173
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
A +P+ + S++E+L+EADV+SLH L T+ L+N+ERL MK+ AIL+N +R
Sbjct: 174 --ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTAR 230
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREG 239
G ++D ALVE L+ + +F GLDV + EP + PG L + NA++ PHI SA + TRE
Sbjct: 231 GALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALPNAVITPHIGSAGRTTRER 288
Query: 240 MATLAALNVLGKIKG 254
MA +A N+L ++G
Sbjct: 289 MAEVAVENLLAVLEG 303
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 136/253 (53%), Gaps = 21/253 (8%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG +N+DV AA + GI V N P R+I AD MR G+ W
Sbjct: 75 VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGV---WA 131
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
+G L+G+T+G+IG GRIG A++ MN++ YD Y K V G+F+
Sbjct: 132 KKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEVN--GKFV 188
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
++ +L+E+DV+++H L ++TYHLIN+ERL MKK AIL+N SRG
Sbjct: 189 --------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMA 241
PV+D ALV+ LK+ + GLDVFE+EP K L++ N ++ PHI +++ +E
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG 294
Query: 242 TLAALNVLGKIKG 254
A V+ +KG
Sbjct: 295 VEVAEKVVKILKG 307
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 17/238 (7%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
++VGY+++D AA GI V +TP V RR EAD +R+G + G
Sbjct: 101 LSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPG 160
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P +G L G+ +G+ G GRIG A A GF + + Y++ TRL +
Sbjct: 161 WGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSHAL----- 211
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
E+ + ++D +L +D+ + ++ +R+A + + A+++N S
Sbjct: 212 ------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
RG +I++ AL+E L+ +F GLDVF +EP + P + N + PHI SA+ TR+
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRD 321
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 122/258 (47%), Gaps = 17/258 (6%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
M+VG +++ ++ K GI VG TP V RR+ EA E ++ G +
Sbjct: 83 MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS 142
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P G L TVG+IG GRIG A AR + + F + Y Q R E+ +
Sbjct: 143 WKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYTGRQP-RPEEAAEFQAE 200
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
F+ S E+ ++D I + L T L NK+ MK+ A+ +N S
Sbjct: 201 FV--------------STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREG 239
RG V+++ L + L + GLDV EP L +KN +++PHI SA+ TR
Sbjct: 247 RGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNT 306
Query: 240 MATLAALNVLGKIKGYPI 257
M+ LAA N+L ++G P+
Sbjct: 307 MSLLAANNLLAGLRGEPM 324
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 15/243 (6%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
++G++++D++A GI VGN P RR E ++ +R + GW
Sbjct: 75 SIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGW 134
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
P VG L +T+G+ G G IG A A+ +GF M++ Y+D ++A+
Sbjct: 135 EPLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------ 181
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
++ E S+D +L + SL+ T + NK + ++ + AI+VN +R
Sbjct: 182 --SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTAR 239
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
G ++D +V L+ + G DVF EP + G ++ N + PHI SA+ RE MA
Sbjct: 240 GDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 242 TLA 244
A
Sbjct: 300 HQA 302
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
+VG + VD+ + G+ V NTP V RRI E D+++R G +
Sbjct: 94 FSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK- 152
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
+ + G+ VG+IG GRIG A A E F + Y+ +R +K T Y
Sbjct: 153 -FGDFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTY 205
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
+ S+ E+ +D++ + L T H+IN+E + + + +L+N
Sbjct: 206 Y--------------GSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIG 251
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
RGP +DE LV L + + GLDVFE EP + L ++N +++PH+ S + TR+ M
Sbjct: 252 RGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVM 311
Query: 241 ATLAALNVLGKIKGYPI 257
A L N+ G P+
Sbjct: 312 ADLVVGNLEAHFSGKPL 328
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 123/259 (47%), Gaps = 26/259 (10%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
GY+NVD+ AA + GIAV N P RR + +R G +
Sbjct: 79 GYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVE 138
Query: 64 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+ ++G+T+G+IG GR G A A + + F ++I+YD Y
Sbjct: 139 QIREVASGAARIRGETLGLIGFGRTGQAVA-VRAKAFGFSVIFYDPY------------- 184
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
L+ E+ + +R ++ ++L ++D +SLH L++ +HLIN + M++ A LVN
Sbjct: 185 --LQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNA 242
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIA----SAS 233
+RG ++DE AL + LK+ + LDV E EP + + L + N I PH A AS
Sbjct: 243 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQAS 302
Query: 234 KWTREGMATLAALNVLGKI 252
RE AT + G+I
Sbjct: 303 LEMREAAATEIRRAITGRI 321
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 17/256 (6%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
+VG +++ ++ K GI VG TP V RR+ EA E ++ G + W
Sbjct: 82 SVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSW 141
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
P G L TVG+IG GRIG A AR + + F + Y Q R E+ +F
Sbjct: 142 KPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYTGRQP-RPEEAAEFQAEF 199
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
+ S E+ ++D I + L T L NK+ K+ A+ +N SR
Sbjct: 200 V--------------STPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISR 245
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREGM 240
G V+++ L + L + GLDV EP L +KN +++PHI SA+ TR
Sbjct: 246 GDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTX 305
Query: 241 ATLAALNVLGKIKGYP 256
+ LAA N+L ++G P
Sbjct: 306 SLLAANNLLAGLRGEP 321
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 22/257 (8%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N+D+ +A GIAV N P RR + +R G +
Sbjct: 98 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 64 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+ ++G+T+G+IG GR+G A A + + F N+++YD Y + +E+ A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
+R S++ ++L +D ++LH L++ +HLIN + M++ A LVN
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
+RG ++DE AL + LK+ + LDV E EP + + L + N I PH A S+
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 238 EGMATLAALNVLGKIKG 254
M AA + I G
Sbjct: 322 IEMREEAAREIRRAITG 338
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 22/257 (8%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N+D+ +A GIAV N P RR + +R G +
Sbjct: 98 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 64 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+ ++G+T+G+IG GR+G A A + + F N+++YD Y + +E+ A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
+R S++ ++L +D ++LH L++ +HLIN + M++ A LVN
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
+RG ++DE AL + LK+ + LDV E EP + + L + N I PH A S+
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 238 EGMATLAALNVLGKIKG 254
M AA + I G
Sbjct: 322 IEMREEAAREIRRAITG 338
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N+D+ +A GIAV N P RR + +R G +
Sbjct: 95 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 64 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+ ++G+T+G+IG GR+G A A + + F N+++YD Y
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
L E+ + +R S++ ++L +D ++LH L++ +HLIN + M++ A LVN
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
+RG ++DE AL + LK+ + LDV E EP + + L + N I PH A S+
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 318
Query: 238 EGMATLAALNVLGKIKG 254
M AA + I G
Sbjct: 319 IEMREEAAREIRRAITG 335
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 24/258 (9%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
+ GY+N+D+ A K GI V G+ R+I AD+F+R G ++
Sbjct: 72 SAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 131
Query: 62 LPNLFVG----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
++ G L G+ VG++G G IG A AR ++ F + L Y+ ++ +EK + A
Sbjct: 132 -AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA 189
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
R +DE+L ++D++ L L + TYH+IN+ER+ ++ + LV
Sbjct: 190 ----------------RYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLV 232
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWT 236
N RG ++DE A+ E +KQ + DVFE EP + L + + ++ PH A +
Sbjct: 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEA 292
Query: 237 REGMATLAALNVLGKIKG 254
+E + A N+L ++G
Sbjct: 293 QEDVGFRAVENLLKVLRG 310
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 78 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
F G L TVG +G G IG A A + +G+ L Y+ + L
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
V+DE A++ L++ + DVFE E + + P L N + PHI SA +
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 236 TREGMATLAALNVLGKIKG 254
R + AA N+L + G
Sbjct: 301 VRLEIERCAAQNILQALAG 319
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 22/257 (8%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N+D+ +A GIAV N P RR + +R G +
Sbjct: 98 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 64 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+ ++G+T+G+IG R+G A A + + F N+++YD Y
Sbjct: 158 QIREVASGAARIRGETLGIIGLERVGQAVA-LRAKAFGFNVLFYDPY------------- 203
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
L E+ + +R S++ ++L +D ++LH L++ +HLIN + M++ A LVN
Sbjct: 204 --LSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
+RG ++DE AL + LK+ + LDV E EP + + L + N I PH A S+
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 238 EGMATLAALNVLGKIKG 254
M AA + I G
Sbjct: 322 IEMREEAAREIRRAITG 338
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 20/257 (7%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
G +NVD+ AA + GI V NTP R+I +A M+ G W
Sbjct: 98 TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWE 154
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
F+G L G+T+G++G GRIG A M + F M I YD + + ++G
Sbjct: 155 RKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG--- 207
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
+ ++E+ D I++H L +T L+N A KK +VNC+RG
Sbjct: 208 ----------VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
++DE AL+ L+ LDVF +EP L + +N I PH+ +++K +
Sbjct: 258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE 317
Query: 243 LAALNVLGKIKGYPIWG 259
A+ + +KG + G
Sbjct: 318 EIAVQFVDMVKGKSLTG 334
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 34/279 (12%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG +NVDV+AA G+ V N P R+I AD +R W
Sbjct: 74 VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR---EHTWK 130
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
+ F G + G+TVGV+G GRIG A+ + F ++ YD Y
Sbjct: 131 RSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY---------------- 173
Query: 123 KANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 175
V+ RA+ S+D++L AD IS+H T LI+KE LA K I
Sbjct: 174 -------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVI 226
Query: 176 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW 235
+VN +RG ++DE AL + + + GLDVF EP L E+ +V PH+ +++
Sbjct: 227 IVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE 286
Query: 236 TREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 274
++ T A +V + G + N +NE P
Sbjct: 287 AQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 325
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 34/279 (12%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG +NVDV+AA G+ V N P R+I AD +R W
Sbjct: 75 VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR---EHTWK 131
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
+ F G + G+TVGV+G GRIG A+ + F ++ YD Y
Sbjct: 132 RSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY---------------- 174
Query: 123 KANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 175
V+ RA+ S+D++L AD IS+H T LI+KE LA K I
Sbjct: 175 -------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVI 227
Query: 176 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW 235
+VN +RG ++DE AL + + + GLDVF EP L E+ +V PH+ +++
Sbjct: 228 IVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE 287
Query: 236 TREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 274
++ T A +V + G + N +NE P
Sbjct: 288 AQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 326
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
F G L TVG +G G IG A A + +G+ L Y++ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
V+DE A++ L++ + DVFE E + + P L N + PHI SA +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
R + AA N+L + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
F G L TVG +G G IG A A + +G+ L Y++ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
V+DE A++ L++ + DVFE E + + P L N + PHI SA +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
R + AA N+L + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
F G L TVG +G G IG A A + +G+ L Y+ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
V+DE A++ L++ + DVFE E + + P L N + PHI SA +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
R + AA N+L + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
G++N DV+A G+ + P + R + AD F+R+G + GW P
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
F G L TVG +G G IG A A + +G+ L Y+ + L
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN RG
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
V+DE A++ L++ + DVFE E + + P L N + PHI SA +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
R + AA N+L + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 118/266 (44%), Gaps = 35/266 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG +N+D++ A + G + N P R+ DE M A W
Sbjct: 79 VGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKM-AKRDLRWA 137
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
P +G ++ Q VGV+G G IG + R+M EGF +I YD+++ LEK G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMRIM-EGFGAKVIAYDIFKNPELEK----KGYYV 190
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
S+D++ ++ADVISLH H+IN + +A MK ++VNCSRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRG 237
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE-------------PYMK-PGLSEMKNAIVVPH 228
++D A++ L +F +D +EDE P + L + N +V PH
Sbjct: 238 RLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPH 297
Query: 229 IASASKWTREGMATLAALNVLGKIKG 254
A + M A N L I G
Sbjct: 298 TAFYTTHAVRNMVVKAFNNNLKLING 323
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 29/248 (11%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
+VG N V++ AA K GI V N P RRI AG G
Sbjct: 87 FSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG---G 143
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W ++G+T+G++G G IGS + E M + YYD + +L+ YG
Sbjct: 144 WEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESLGMTVRYYD--TSDKLQ-----YGN 195
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
K A+S+DE+L+ +DV+SLH K+T LI + +L MKK A L+N +
Sbjct: 196 V-----------KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNA 244
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEP------YMKPGLSEMKNAIVVPHIASASK 234
RG +D AL + L++ + +DVF EP + P L ++N I+ PHI +++
Sbjct: 245 RGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTP-LQGLENVILTPHIGGSTE 303
Query: 235 WTREGMAT 242
+E + T
Sbjct: 304 EAQERIGT 311
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW-L 62
G++ +D++A N+ G+A N+ G R ++ R G + +
Sbjct: 90 GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 63 PNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+L +G +G +G +G G I AR V G M L+YYD+ A
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA----------- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK + +VN
Sbjct: 199 ---DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNT 255
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 239
+RGPVI + AL+ LK + GLDV E EP + L EMK+ + HI + T
Sbjct: 256 ARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHE 315
Query: 240 MATLAALNV 248
L N+
Sbjct: 316 FERLTMTNI 324
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW-L 62
G++ +D++A N+ G+A N+ G R ++ R G + +
Sbjct: 90 GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 63 PNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+L +G +G +G +G G I AR V G M L+YYD+ A
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA----------- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK + +VN
Sbjct: 199 ---DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNT 255
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 239
+RGPVI + AL+ LK + GLDV E EP + L EMK+ + HI + T
Sbjct: 256 ARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHE 315
Query: 240 MATLAALNV 248
L N+
Sbjct: 316 FERLTMTNI 324
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW-L 62
G++ +D++A N+ G+A N+ G R ++ R G + +
Sbjct: 90 GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 63 PNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+L +G +G +G +G G I AR V G M L+YYD+ A
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA----------- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK + +VN
Sbjct: 199 ---DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNT 255
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 239
+RGPVI + AL+ LK + GLDV E EP + L EMK+ + HI + T
Sbjct: 256 ARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHE 315
Query: 240 MATLAALNV 248
L N+
Sbjct: 316 FERLTMTNI 324
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 37/267 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GW 61
VG +N+D+ A + G + N P R+ DE + +D W
Sbjct: 79 VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRW 136
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
P +G ++ Q VGV+G G IG + ++M EGF +I YD+++ LEK G +
Sbjct: 137 APT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYY 189
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
+ S+D++ ++ADVISLH H+IN E +A MK++ ++VN SR
Sbjct: 190 V-------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDE-----------PYMKPGLSEM---KNAIVVP 227
GP++D A++ L +F +DV+E E + L+++ N +V P
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 228 HIASASKWTREGMATLAALNVLGKIKG 254
H A + M A N L ++G
Sbjct: 297 HTAFYTTHAVRNMVVKAFDNNLELVEG 323
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 23/209 (11%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GW 61
VG +N+D+ A + G + N P R+ DE + +D W
Sbjct: 79 VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRW 136
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
P +G ++ Q VGV+G G IG + ++M EGF +I YD+++ LEK G +
Sbjct: 137 APT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYY 189
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
+ S+D++ ++ADVISLH H+IN E +A MK++ ++VN SR
Sbjct: 190 V-------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDE 210
GP++D A++ L +F +DV+E E
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 21/252 (8%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG + VD+ A + I V TPGV RR+ + D +R G +
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
L +G+ KG+ +GV+G G+IG A A E F ++ Y++ +
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRSTLS------------- 206
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
V W S ++ R++DV+++ T ++++ L + E I+VN +RG
Sbjct: 207 ------GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
V+DE AL+E LK + GLDVF +EP ++ N ++ PH SA+ TR
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGK 320
Query: 243 LAALNVLGKIKG 254
L N+ G
Sbjct: 321 LVLANLAAHFAG 332
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 38/276 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG+N ++ + KY + V N P R+I E M W
Sbjct: 79 VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
NL + N + TVG+IG G IGSA A + +I YD+ E F+T Y F
Sbjct: 139 SNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFEPFLT-YTDF- 194
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
D VL+EAD++SLH L +T ++I +++L MKK A L+NC+RG
Sbjct: 195 ----------------DTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG 238
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE--------------PYMKPGLSEMKNAIVVPH 228
++D AL++ L+ + GLD E P L++M N ++ PH
Sbjct: 239 ELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
Query: 229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 264
A ++ + M + + L KG G P +
Sbjct: 299 SAFYTETSIRNMVQICLTDQLTIAKG----GRPRSI 330
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 36/245 (14%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
+VG++++D++ K GI V + P +R+ ++ R +
Sbjct: 72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RVKKLNFS 129
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
+ + L T+GVIG GRIGS A + F ++ YD+ + L++ Y
Sbjct: 130 QDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKGCVY--- 185
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
+S+DE+L+E+DVISLH K T+H IN+ER++ K L+N +R
Sbjct: 186 --------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTAR 231
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK--------NAIV 225
G V+D AL ++ +GLDVFEDE + K +K N I+
Sbjct: 232 GKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII 291
Query: 226 VPHIA 230
PHIA
Sbjct: 292 TPHIA 296
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 37/243 (15%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
VG +N+D+ A +YGI + N P R + + ++AG Y+
Sbjct: 77 VGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEK-- 134
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
F+G L QTVGV+G G IG A + +GF +I YD Y
Sbjct: 135 AGTFIGKELGQQTVGVMGTGHIGQV-AIKLFKGFGAKVIAYDPY---------------- 177
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSR 181
G+ P S++++ +++DVI LH P +++ T H+IN+ MK AI++N +R
Sbjct: 178 PMKGDHPDF--DYVSLEDLFKQSDVIDLHVPGIEQNT-HIINEAAFNLMKPGAIVINTAR 234
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDE-----------PYMKPGLSE---MKNAIVVP 227
+ID A++ +LK + VG+D +E E + P E M N ++ P
Sbjct: 235 PNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSP 294
Query: 228 HIA 230
HIA
Sbjct: 295 HIA 297
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 33/266 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
A+G N VD++AA K GI V N P R + EA+ G+++
Sbjct: 82 FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 141
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
F +G+ +G+IG G IG+ ++ E M + +YD+ L
Sbjct: 142 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL--------- 188
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L+N S
Sbjct: 189 ---GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 239
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
RG V+D AL + L + +DVF E P+ P L+E N ++ PHI +++
Sbjct: 240 RGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIGGSTQ 298
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
+E + L V GK+ Y G+
Sbjct: 299 EAQENI----GLEVAGKLIKYSDNGS 320
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 33/266 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
A+G N VD++AA K GI V N P R + EA+ G+++
Sbjct: 82 FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 141
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
F +G+ +G+IG G IG+ ++ E M + +YD+ L
Sbjct: 142 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL--------- 188
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L+N S
Sbjct: 189 ---GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 239
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
RG V+D AL + L + +DVF E P+ P L+E N ++ PHI +++
Sbjct: 240 RGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIGGSTQ 298
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
+E + L V GK+ Y G+
Sbjct: 299 EAQENI----GLEVAGKLIKYSDNGS 320
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 63 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
PN +G +LKGQT+G+ G G+IG + Y R F MN++ + +
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
+ +A+G + A S D + ++DV+S+H L+ T +I L MK A+ VN
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE 238
SR +++E +V L + +DVFE EP ++ L M+N I PHI + + E
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE 310
Query: 239 GMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSK 285
+A N+L ++ GN + V A P A +P+++ ++
Sbjct: 311 MYFGIAFQNILDILQ-----GNVDSV-------ANPTALAPALIRAE 345
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 33/266 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
+G N VD++AA K GI V N P R + EA+ G+++
Sbjct: 81 FCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 140
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
F +G+ +G+IG G IG+ ++ E M + +YD+ L
Sbjct: 141 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL--------- 187
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L+N S
Sbjct: 188 ---GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 238
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
RG V+D AL + L + +DVF E P+ P L E N ++ PHI +++
Sbjct: 239 RGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIGGSTQ 297
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
+E + L V GK+ Y G+
Sbjct: 298 EAQENI----GLEVAGKLIKYSDNGS 319
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 25/254 (9%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
+G +N+D A K I V PG R++ + ++G++
Sbjct: 77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-- 134
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
G L G+T+G++G GRIG+ ++ M ++ YD+ + + A
Sbjct: 135 ---IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKINA----- 185
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
+A S++E+L+ +DVISLH + K +I+ + MK I+VN SR
Sbjct: 186 -----------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTREG 239
++ AL++++K+ ++ DVF +EP + L + + IV HI + +K ++
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 240 MATLAALNVLGKIK 253
+A + N+L +K
Sbjct: 295 VAEMTTQNLLNAMK 308
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 33/266 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
+G N VD++AA K GI V N P R + EA+ G+++
Sbjct: 82 FCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 141
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
F +G+ +G+IG G IG+ ++ E + +YD+ L
Sbjct: 142 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL--------- 188
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
N Q + ++L +DV+SLH + +T + + ++ K ++L+N S
Sbjct: 189 ---GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINAS 239
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
RG V+D AL + L + +DVF E P+ P L E N ++ PHI +++
Sbjct: 240 RGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIGGSTQ 298
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
+E + L V GK+ Y G+
Sbjct: 299 EAQENI----GLEVAGKLIKYSDNGS 320
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 114/266 (42%), Gaps = 33/266 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
A+G N VD++AA K GI V N P R + EA+ G+ +
Sbjct: 76 FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNK 135
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
F +G+ +G+IG G IG+ ++ E + +YD+ L
Sbjct: 136 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL--------- 182
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
N Q + ++L +DV+SLH + +T + + ++ K ++L+N S
Sbjct: 183 ---GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINAS 233
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
RG V+D AL + L + +DVF E P+ P L+E N ++ PHI +++
Sbjct: 234 RGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIGGSTQ 292
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
+E + L V GK+ Y G+
Sbjct: 293 EAQENI----GLEVAGKLIKYSDNGS 314
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 127
G L+ +T+G++G G +GS + +E + + D +A R ++ G F
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 128 QPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGP 183
++DE+++EADV++ H L K T HL ++ + +K AIL+N RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
V+D AL+ L V LDV+E EP + L E + I HIA +T EG A
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIAG---YTLEGKA 267
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 137 SMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 192
S++ +L EADVISLH L++ T HL+++ RLA ++ LVN SRG V+D AL
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 193 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 233
L+ V LDV+E EP P L+ + I PHIA S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
++ TVGV+G GRIG A++ G +I D+++ +E + T
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
S+DEVL ++D+I++H K ++ ++ L MK AILVNC+RG ++D A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 191 VEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKW 235
+E ++ + G DV + E P + + ++ PH+ S +
Sbjct: 245 IEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
Query: 236 TREGMATLAALNV 248
+ M ++ N+
Sbjct: 305 AVKNMVEVSYQNL 317
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 129
L+G+T+G +GAGRIG + + + F NL+Y+D Q A LEK A
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
K ++E+L + DVI ++ L + T + NKE + +KK ++VN +RG +++ A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 233
+V+ ++ + DV++ +P K M N + PH + +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 129
L+G+T+G +GAGRIG + + + F NL+Y+D Q A LEK A
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
K ++E+L + DVI ++ L + T + NKE + +KK ++VN +RG +++ A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 233
+V+ ++ + DV++ +P K M N + PH + +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
++G+T+ IGAGRIG +V L+YYD YQA L + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
+R +++E++ +AD+++++ L T LINKE L+ KK A LVN +RG + +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 191 VEHLKQNPMFRVGLDVFEDEP 211
L+ + G DV+ +P
Sbjct: 268 AAALESGQLRGYGGDVWFPQP 288
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
++G+T+ IGAGRIG +V L+YYD YQA L + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
+R +++E++ +AD+++++ L T LINKE L+ KK A LVN +RG + +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 191 VEHLKQNPMFRVGLDVFEDEP 211
L+ + G DV+ +P
Sbjct: 269 AAALESGQLRGYGGDVWFPQP 289
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
+G ++VD+ AA I V R + + ++ R G GW
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 63 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
V ++G VG + AGRIG R++ F M+L Y D + RL + V
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
E +TW ++ +++ DV++L+ L T H+IN E L K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 232
RG + D A+V L+ + DV+ D P+ M + + PHI+ S
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 338
Query: 233 SKWTREGMATLAALNVLGKIKGYPI 257
S TR T L +G PI
Sbjct: 339 SAQTRYAAGTREILECY--FEGRPI 361
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
+G ++VD+ AA I V R + + ++ R G GW
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 63 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
V ++G VG + AGRIG R++ F M+L Y D + RL + V
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
E +TW ++ +++ DV++L+ L T H+IN E L K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 232
RG + D A+V L+ + DV+ D P+ M + + PHI+ S
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 339
Query: 233 SKWTREGMATLAALNVLGKIKGYPI 257
S TR T L +G PI
Sbjct: 340 SAQTRYAAGTREILECY--FEGRPI 362
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 44 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 101
+RI++ E + G Y D +P L++G+ V V+G G IG
Sbjct: 99 KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 102 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 159
TR+ K + A G ++ P W+ +S++E LREA L+K T
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207
L+ + LA ++A+ VN R V+D ++ LK+ P F DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
+G ++VD+ +A + V R + + E+ R G GW
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 63 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
V + L+ VG + AGRIG A R + F ++L Y D + RL + V
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
E +TW ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
RG + D A+ L+ + DV+ +P K P + N + PHI+ +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
+G ++VD+ +A + V R + + E+ R G GW
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 63 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
V + L+ VG + AGRIG A R + F ++L Y D + RL + V
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
E +TW ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
RG + D A+ L+ + DV+ +P K P + N + PHI+ +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
+G ++VD+ +A + V R + + E+ R G GW
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 63 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
V + L+ VG + AGRIG A R + F ++L Y D + RL + V
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
E +TW ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
RG + D A+ L+ + DV+ +P K P + N + PHI+ +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 212
L TT+HL + E K++ +L+N RGP +D AL+ L + + LDV E EP
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 213 MKPGLSEMKNAIVVPHIA 230
L + + ++ PHI+
Sbjct: 261 TDHPLWQRDDVLITPHIS 278
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
LKG+T+ ++G G IG A + F M ++ +R + + Q +
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQVYQL------ 185
Query: 131 TWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
+++++L +ADVI S+ P + T+HL R K AIL N RG I+E
Sbjct: 186 -----PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAAL 246
L+ L+ + LDVFE EP P S + N I+ PH ++ S + +A +
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVR 295
Query: 247 NVLGKIKGYPIWG 259
N + I G P+ G
Sbjct: 296 NYIRFIDGQPLDG 308
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 119 GQFLKANGEQPVTWKRAS----------SMDEVLREADVISLHPVLDKTTYHLINKERLA 168
KA G + + + R+S S ++ R++D + + L T +N LA
Sbjct: 138 AHLAKAFGXRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLA 197
Query: 169 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 228
+K +VN +R V+ + + LK+ DV+ +EP + + ++NAI+ PH
Sbjct: 198 NARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPH 255
Query: 229 IA 230
+A
Sbjct: 256 VA 257
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPG 216
T +IN E L + A ++N +RG + E L+ L + LDVF EP +
Sbjct: 207 TVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESP 266
Query: 217 LSEMKNAIVVPHIASASK 234
L PHIA+ ++
Sbjct: 267 LWRHPRVAXTPHIAAVTR 284
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 51 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 90
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 91 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 123
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 51 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 90
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 91 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 123
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 51 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 90
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 91 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 123
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 51 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 90
E +R+G D N +VGN L G+T+G+ G+G +G Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 316
Query: 91 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 123
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
Query: 51 EFMRAGLYDGWLPNLFVGN------------------LLKGQTVGVI--GAGRIGSAYAR 90
E +R+G D N +VGN L G+T+G+ G+G + Y+
Sbjct: 257 ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVVEFYSA 316
Query: 91 MMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLK 123
+VEG+K +L + R E V AY F K
Sbjct: 317 TLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFK 351
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 116 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 175
T + Q L NGE+ + W R + +++ +V P ++++ + L +KKE I
Sbjct: 27 TVFAQXLHENGEEVILWARRKEIVDLI---NVSHTSPYVEESKITVRATNDLEEIKKEDI 83
Query: 176 LV 177
LV
Sbjct: 84 LV 85
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered Orthorhombic
Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 80 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 139
G GR S YA+++ F+ +Y D Y+ R +F +LK E+ VT + ++
Sbjct: 1015 GIGR-PSTYAKIVEVLFRRGYVYEDKYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLE 1073
Query: 140 EVL 142
E++
Sbjct: 1074 EIM 1076
>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|C Chain C, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
Length = 310
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 60 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
G L NL V VG + GR + + + + F N Y+ A + +++
Sbjct: 150 GRLDNLHVA------MVGDLKYGRTVHSLTQALAK-FDGNRFYFIAPDALAMPQYI---- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPV----LDKTTYHLINKE 165
L E+ + W SS++EV+ E D++ + V LD + Y +N +
Sbjct: 199 --LDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVNAQ 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,448,125
Number of Sequences: 62578
Number of extensions: 333307
Number of successful extensions: 997
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 72
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)