Query 022672
Match_columns 294
No_of_seqs 305 out of 1976
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 4.7E-73 1E-77 534.6 30.1 294 1-294 93-386 (386)
2 COG0111 SerA Phosphoglycerate 100.0 3.8E-68 8.2E-73 490.7 27.1 240 1-259 73-313 (324)
3 PRK15409 bifunctional glyoxyla 100.0 1.1E-66 2.4E-71 482.3 28.1 245 1-262 73-319 (323)
4 COG1052 LdhA Lactate dehydroge 100.0 2E-66 4.4E-71 478.8 26.8 245 1-262 73-322 (324)
5 PRK06487 glycerate dehydrogena 100.0 4.4E-65 9.5E-70 471.2 27.7 235 1-257 73-313 (317)
6 PRK08410 2-hydroxyacid dehydro 100.0 9.8E-65 2.1E-69 467.7 26.3 234 1-255 70-310 (311)
7 TIGR01327 PGDH D-3-phosphoglyc 100.0 2.2E-64 4.8E-69 494.6 27.1 272 1-294 69-340 (525)
8 PRK13243 glyoxylate reductase; 100.0 7.8E-64 1.7E-68 465.7 27.4 246 1-263 74-323 (333)
9 PRK06932 glycerate dehydrogena 100.0 1.1E-63 2.3E-68 461.2 26.5 234 1-255 72-313 (314)
10 PRK11790 D-3-phosphoglycerate 100.0 2.1E-63 4.5E-68 473.8 26.0 242 1-264 82-328 (409)
11 PRK13581 D-3-phosphoglycerate 100.0 1.8E-63 3.8E-68 488.3 25.9 271 1-294 71-341 (526)
12 PRK07574 formate dehydrogenase 100.0 7.6E-63 1.7E-67 464.3 26.1 249 1-265 121-370 (385)
13 PLN03139 formate dehydrogenase 100.0 3.9E-62 8.5E-67 459.2 26.6 243 1-259 128-371 (386)
14 PLN02928 oxidoreductase family 100.0 2.5E-61 5.3E-66 450.8 27.5 250 1-260 89-343 (347)
15 KOG0068 D-3-phosphoglycerate d 100.0 2.4E-62 5.2E-67 439.0 19.3 269 1-293 77-348 (406)
16 KOG0069 Glyoxylate/hydroxypyru 100.0 4.4E-60 9.6E-65 432.8 23.0 245 1-262 91-335 (336)
17 PRK12480 D-lactate dehydrogena 100.0 1.2E-59 2.6E-64 436.7 25.0 241 1-262 76-330 (330)
18 PRK08605 D-lactate dehydrogena 100.0 3.3E-58 7.1E-63 428.0 27.1 243 1-262 76-332 (332)
19 PRK15469 ghrA bifunctional gly 100.0 4.7E-58 1E-62 422.9 25.0 239 1-263 63-308 (312)
20 PRK06436 glycerate dehydrogena 100.0 1.6E-57 3.5E-62 417.3 26.9 234 1-263 56-290 (303)
21 PRK15438 erythronate-4-phospha 100.0 3.3E-55 7.2E-60 410.9 24.9 214 1-257 65-282 (378)
22 PRK00257 erythronate-4-phospha 100.0 7E-55 1.5E-59 409.8 25.6 221 1-263 65-289 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 4E-50 8.6E-55 342.9 16.3 177 36-230 1-178 (178)
24 KOG0067 Transcription factor C 100.0 3.9E-31 8.5E-36 240.3 11.1 240 1-263 102-350 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 3.5E-21 7.6E-26 184.4 17.9 159 12-214 210-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 8.7E-19 1.9E-23 160.2 11.3 140 2-183 97-243 (287)
27 PLN02494 adenosylhomocysteinas 99.7 2.8E-16 6.1E-21 150.4 11.0 122 69-211 250-374 (477)
28 TIGR00936 ahcY adenosylhomocys 99.6 1.5E-14 3.2E-19 137.4 11.7 120 70-209 192-312 (406)
29 PRK13403 ketol-acid reductoiso 99.5 3.4E-14 7.3E-19 130.2 8.6 93 69-178 12-104 (335)
30 PRK08306 dipicolinate synthase 99.5 1.5E-13 3.3E-18 126.2 12.4 137 2-181 100-242 (296)
31 PF03446 NAD_binding_2: NAD bi 99.4 3.9E-13 8.5E-18 113.0 7.9 116 74-206 2-118 (163)
32 COG2084 MmsB 3-hydroxyisobutyr 99.4 1.3E-12 2.8E-17 118.5 10.3 124 74-211 1-126 (286)
33 PF00670 AdoHcyase_NAD: S-aden 99.4 3.8E-12 8.2E-17 106.0 11.0 104 69-192 19-123 (162)
34 PRK05476 S-adenosyl-L-homocyst 99.4 5.3E-12 1.2E-16 120.7 12.6 144 12-192 168-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.3 1E-11 2.2E-16 113.7 9.7 111 75-200 1-113 (291)
36 PRK11559 garR tartronate semia 99.3 1.1E-11 2.4E-16 113.7 9.9 123 74-211 3-127 (296)
37 PF00389 2-Hacid_dh: D-isomer 99.3 1E-11 2.2E-16 100.8 7.9 35 1-35 67-101 (133)
38 PRK12490 6-phosphogluconate de 99.3 4.1E-11 9E-16 110.3 11.1 113 75-205 2-117 (299)
39 PRK15461 NADH-dependent gamma- 99.2 3E-11 6.5E-16 111.1 10.1 112 74-200 2-115 (296)
40 PRK09599 6-phosphogluconate de 99.2 2.1E-10 4.5E-15 105.7 11.1 114 74-205 1-117 (301)
41 PRK05479 ketol-acid reductoiso 99.1 1.9E-10 4.1E-15 106.7 8.6 119 69-212 13-131 (330)
42 PLN02712 arogenate dehydrogena 99.1 3E-10 6.6E-15 114.8 10.6 114 66-196 362-476 (667)
43 PLN02350 phosphogluconate dehy 99.1 4E-10 8.7E-15 109.9 10.7 128 75-211 8-138 (493)
44 cd00401 AdoHcyase S-adenosyl-L 99.1 6.4E-10 1.4E-14 106.2 11.3 105 68-192 197-302 (413)
45 PLN02256 arogenate dehydrogena 99.1 3.5E-09 7.5E-14 97.8 14.4 109 71-196 34-143 (304)
46 PRK15059 tartronate semialdehy 99.0 1.2E-09 2.5E-14 100.4 10.4 113 75-205 2-116 (292)
47 PTZ00142 6-phosphogluconate de 99.0 1.1E-09 2.3E-14 106.6 10.5 128 74-211 2-132 (470)
48 TIGR00872 gnd_rel 6-phosphoglu 99.0 3.4E-09 7.3E-14 97.6 11.4 110 74-200 1-113 (298)
49 PLN02858 fructose-bisphosphate 99.0 1.8E-09 4E-14 116.6 11.0 120 72-206 3-124 (1378)
50 PRK08655 prephenate dehydrogen 99.0 6.5E-09 1.4E-13 100.6 12.8 134 74-229 1-137 (437)
51 PLN02858 fructose-bisphosphate 99.0 2.4E-09 5.3E-14 115.7 10.7 110 72-196 323-434 (1378)
52 TIGR01692 HIBADH 3-hydroxyisob 98.9 3.5E-09 7.5E-14 97.0 8.8 111 78-205 1-113 (288)
53 TIGR00873 gnd 6-phosphoglucona 98.9 5.5E-09 1.2E-13 101.7 10.5 124 76-210 2-128 (467)
54 KOG0409 Predicted dehydrogenas 98.9 3.6E-09 7.9E-14 95.4 8.1 114 71-199 33-149 (327)
55 PRK07417 arogenate dehydrogena 98.9 1.4E-08 3E-13 92.6 12.1 94 74-183 1-94 (279)
56 TIGR00465 ilvC ketol-acid redu 98.9 5.7E-09 1.2E-13 96.7 9.2 98 71-185 1-98 (314)
57 PRK07066 3-hydroxybutyryl-CoA 98.9 2.6E-08 5.7E-13 92.4 12.6 120 74-196 8-133 (321)
58 PRK07502 cyclohexadienyl dehyd 98.9 2E-08 4.2E-13 92.8 11.7 141 73-231 6-155 (307)
59 PRK08818 prephenate dehydrogen 98.9 1.9E-08 4.1E-13 95.0 11.6 122 71-228 2-130 (370)
60 PRK09260 3-hydroxybutyryl-CoA 98.9 8.9E-08 1.9E-12 87.6 15.5 128 74-207 2-141 (288)
61 COG0499 SAM1 S-adenosylhomocys 98.9 1.3E-08 2.8E-13 93.8 9.6 103 70-192 206-309 (420)
62 PRK15182 Vi polysaccharide bio 98.9 3.5E-08 7.7E-13 95.1 13.2 144 74-225 7-173 (425)
63 PLN02545 3-hydroxybutyryl-CoA 98.9 5E-08 1.1E-12 89.6 13.7 117 74-195 5-132 (295)
64 PRK11064 wecC UDP-N-acetyl-D-m 98.9 3.4E-08 7.3E-13 95.1 13.0 109 74-196 4-135 (415)
65 PRK14619 NAD(P)H-dependent gly 98.9 7.5E-09 1.6E-13 95.7 8.2 83 72-184 3-86 (308)
66 PF03807 F420_oxidored: NADP o 98.8 1.2E-08 2.5E-13 77.8 7.8 92 75-182 1-96 (96)
67 PRK06545 prephenate dehydrogen 98.8 2.6E-08 5.7E-13 94.0 11.4 139 74-231 1-150 (359)
68 PF07991 IlvN: Acetohydroxy ac 98.8 1.3E-08 2.7E-13 84.7 7.2 95 71-182 2-96 (165)
69 COG0287 TyrA Prephenate dehydr 98.8 7.5E-08 1.6E-12 87.7 12.5 137 73-230 3-146 (279)
70 PLN02712 arogenate dehydrogena 98.8 1.7E-08 3.7E-13 102.2 8.9 97 70-183 49-146 (667)
71 PRK05225 ketol-acid reductoiso 98.8 1.5E-08 3.3E-13 96.7 7.2 91 69-177 32-128 (487)
72 PRK08293 3-hydroxybutyryl-CoA 98.7 3.7E-07 7.9E-12 83.6 15.7 152 74-238 4-167 (287)
73 PRK11199 tyrA bifunctional cho 98.7 7.1E-08 1.5E-12 91.6 10.8 90 72-192 97-187 (374)
74 PLN02688 pyrroline-5-carboxyla 98.7 1.7E-07 3.7E-12 84.6 12.7 103 74-195 1-108 (266)
75 TIGR00518 alaDH alanine dehydr 98.7 5.3E-08 1.1E-12 92.3 9.6 103 70-180 164-267 (370)
76 PRK14194 bifunctional 5,10-met 98.7 6.5E-08 1.4E-12 88.6 8.9 80 68-183 154-234 (301)
77 PRK07530 3-hydroxybutyryl-CoA 98.7 6.5E-07 1.4E-11 82.1 15.4 128 74-208 5-144 (292)
78 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 4.1E-07 8.9E-12 79.1 12.8 110 69-200 24-134 (200)
79 PRK08507 prephenate dehydrogen 98.7 4.5E-07 9.9E-12 82.4 13.4 101 74-196 1-103 (275)
80 TIGR03026 NDP-sugDHase nucleot 98.7 4.2E-07 9.2E-12 87.3 13.7 117 74-194 1-134 (411)
81 PRK07679 pyrroline-5-carboxyla 98.6 1.5E-07 3.3E-12 85.7 9.8 106 73-195 3-112 (279)
82 PRK14618 NAD(P)H-dependent gly 98.6 3.2E-07 6.9E-12 85.5 12.1 115 74-196 5-123 (328)
83 cd01065 NAD_bind_Shikimate_DH 98.6 7E-07 1.5E-11 73.7 12.3 115 70-199 16-133 (155)
84 PRK13302 putative L-aspartate 98.6 2.3E-07 4.9E-12 84.4 9.8 111 73-200 6-118 (271)
85 PF01210 NAD_Gly3P_dh_N: NAD-d 98.6 1.9E-07 4E-12 78.0 8.4 105 75-183 1-106 (157)
86 PRK14189 bifunctional 5,10-met 98.6 1.9E-07 4.2E-12 84.9 9.0 80 68-183 153-233 (285)
87 PRK05808 3-hydroxybutyryl-CoA 98.6 6.6E-07 1.4E-11 81.6 12.5 119 74-196 4-132 (282)
88 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 3E-07 6.4E-12 77.7 9.3 82 69-186 40-122 (168)
89 PF10727 Rossmann-like: Rossma 98.6 7.3E-08 1.6E-12 77.6 5.1 94 72-180 9-104 (127)
90 KOG1370 S-adenosylhomocysteine 98.6 2.5E-07 5.4E-12 83.6 8.8 95 70-184 211-305 (434)
91 PRK07819 3-hydroxybutyryl-CoA 98.6 1.5E-06 3.3E-11 79.6 14.2 130 74-209 6-147 (286)
92 PRK15057 UDP-glucose 6-dehydro 98.6 7.1E-07 1.5E-11 85.2 12.3 138 75-225 2-160 (388)
93 PF01488 Shikimate_DH: Shikima 98.6 2.5E-07 5.4E-12 75.3 8.0 105 70-186 9-115 (135)
94 PRK12491 pyrroline-5-carboxyla 98.6 2.7E-07 5.9E-12 83.9 8.9 104 74-195 3-110 (272)
95 PRK00094 gpsA NAD(P)H-dependen 98.5 3.6E-07 7.8E-12 84.6 9.2 108 74-185 2-110 (325)
96 PRK08268 3-hydroxy-acyl-CoA de 98.5 1.5E-06 3.3E-11 85.6 14.0 131 74-211 8-150 (507)
97 PRK06130 3-hydroxybutyryl-CoA 98.5 3.4E-06 7.3E-11 77.9 15.1 117 74-195 5-128 (311)
98 PRK06928 pyrroline-5-carboxyla 98.5 8.8E-07 1.9E-11 80.7 10.7 106 74-195 2-111 (277)
99 COG1023 Gnd Predicted 6-phosph 98.5 1.1E-06 2.3E-11 77.2 10.5 116 74-207 1-119 (300)
100 PRK07531 bifunctional 3-hydrox 98.5 2.7E-06 5.8E-11 83.8 14.7 119 74-196 5-130 (495)
101 PRK06035 3-hydroxyacyl-CoA deh 98.5 6.7E-06 1.5E-10 75.3 16.3 129 74-208 4-146 (291)
102 PRK14806 bifunctional cyclohex 98.5 6.9E-07 1.5E-11 91.9 10.8 138 74-231 4-153 (735)
103 PRK14188 bifunctional 5,10-met 98.5 5.7E-07 1.2E-11 82.4 9.0 80 68-183 153-233 (296)
104 PRK06129 3-hydroxyacyl-CoA deh 98.5 4.3E-06 9.2E-11 77.3 14.8 119 74-196 3-132 (308)
105 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.5 1.2E-06 2.6E-11 86.3 11.1 133 73-212 5-149 (503)
106 PRK14179 bifunctional 5,10-met 98.5 8.2E-07 1.8E-11 80.8 9.0 80 68-183 153-233 (284)
107 PRK05472 redox-sensing transcr 98.4 2.5E-07 5.4E-12 81.1 4.0 136 27-196 59-201 (213)
108 PRK14175 bifunctional 5,10-met 98.4 1.7E-06 3.7E-11 78.9 9.2 80 68-183 153-233 (286)
109 PF02737 3HCDH_N: 3-hydroxyacy 98.3 3.7E-06 8.1E-11 71.8 10.0 144 75-229 1-155 (180)
110 TIGR01724 hmd_rel H2-forming N 98.3 7.9E-06 1.7E-10 75.1 12.3 99 84-196 31-129 (341)
111 PRK07680 late competence prote 98.3 2.7E-06 5.8E-11 77.3 9.2 104 75-195 2-109 (273)
112 PRK06476 pyrroline-5-carboxyla 98.3 3.4E-06 7.3E-11 75.9 9.4 104 75-197 2-108 (258)
113 COG2085 Predicted dinucleotide 98.3 3.4E-06 7.4E-11 73.1 8.8 94 74-182 2-95 (211)
114 PRK07634 pyrroline-5-carboxyla 98.3 7.3E-06 1.6E-10 72.9 10.7 108 72-196 3-113 (245)
115 PRK09287 6-phosphogluconate de 98.3 4.2E-06 9.1E-11 81.4 9.3 117 84-211 1-120 (459)
116 PRK13304 L-aspartate dehydroge 98.2 5.4E-06 1.2E-10 75.2 8.8 107 74-198 2-113 (265)
117 PLN02353 probable UDP-glucose 98.2 3.9E-05 8.5E-10 75.0 15.3 147 74-225 2-176 (473)
118 cd05311 NAD_bind_2_malic_enz N 98.2 4.4E-05 9.4E-10 67.6 14.0 161 69-253 21-196 (226)
119 PF01262 AlaDh_PNT_C: Alanine 98.2 8.4E-06 1.8E-10 68.8 8.7 110 69-180 16-139 (168)
120 PF03721 UDPG_MGDP_dh_N: UDP-g 98.2 4.7E-06 1E-10 71.5 6.9 149 74-225 1-171 (185)
121 COG0240 GpsA Glycerol-3-phosph 98.2 8.5E-06 1.8E-10 75.3 9.0 113 74-189 2-114 (329)
122 PRK11880 pyrroline-5-carboxyla 98.2 8.6E-06 1.9E-10 73.5 8.9 102 74-195 3-107 (267)
123 COG0345 ProC Pyrroline-5-carbo 98.2 2.4E-05 5.1E-10 70.7 11.3 100 74-195 2-108 (266)
124 PF02882 THF_DHG_CYH_C: Tetrah 98.1 1.2E-05 2.6E-10 67.4 8.7 80 69-184 32-112 (160)
125 TIGR01035 hemA glutamyl-tRNA r 98.1 1E-05 2.2E-10 78.0 9.3 102 70-186 177-283 (417)
126 PRK10792 bifunctional 5,10-met 98.1 1.9E-05 4E-10 72.0 10.3 79 68-182 154-233 (285)
127 PRK14191 bifunctional 5,10-met 98.1 1.3E-05 2.8E-10 73.0 9.0 80 68-183 152-232 (285)
128 cd05191 NAD_bind_amino_acid_DH 98.1 2.6E-05 5.6E-10 58.3 9.2 66 70-180 20-86 (86)
129 PRK14178 bifunctional 5,10-met 98.1 1.2E-05 2.6E-10 73.0 8.4 80 68-183 147-227 (279)
130 PLN00203 glutamyl-tRNA reducta 98.1 1.5E-05 3.2E-10 78.7 9.6 101 70-182 263-371 (519)
131 cd05213 NAD_bind_Glutamyl_tRNA 98.1 1.8E-05 4E-10 73.3 9.7 97 71-181 176-274 (311)
132 PRK14192 bifunctional 5,10-met 98.1 1.9E-05 4.2E-10 72.1 9.6 80 68-183 154-234 (283)
133 TIGR00561 pntA NAD(P) transhyd 98.1 1.5E-05 3.2E-10 78.2 9.2 108 70-181 161-285 (511)
134 PRK12921 2-dehydropantoate 2-r 98.1 2.1E-05 4.5E-10 72.2 9.5 120 74-200 1-121 (305)
135 cd05212 NAD_bind_m-THF_DH_Cycl 98.1 5.3E-05 1.1E-09 62.1 10.9 80 68-183 23-103 (140)
136 PTZ00345 glycerol-3-phosphate 98.1 2.1E-05 4.5E-10 74.4 9.6 113 73-187 11-136 (365)
137 PTZ00431 pyrroline carboxylate 98.1 1.4E-05 3E-10 72.2 8.0 96 73-194 3-102 (260)
138 TIGR01546 GAPDH-II_archae glyc 98.1 2.3E-05 5.1E-10 73.0 9.5 101 76-179 1-107 (333)
139 PRK08229 2-dehydropantoate 2-r 98.1 2.8E-05 6E-10 72.6 10.2 118 74-199 3-125 (341)
140 PRK14176 bifunctional 5,10-met 98.0 2.2E-05 4.9E-10 71.5 9.0 78 68-181 159-237 (287)
141 TIGR02371 ala_DH_arch alanine 98.0 3.1E-05 6.6E-10 72.3 9.9 95 73-181 128-223 (325)
142 TIGR03376 glycerol3P_DH glycer 98.0 2E-05 4.4E-10 73.9 8.6 110 75-186 1-122 (342)
143 COG0677 WecC UDP-N-acetyl-D-ma 98.0 0.0001 2.2E-09 69.4 12.6 152 74-238 10-189 (436)
144 COG0686 Ald Alanine dehydrogen 98.0 1.4E-05 3E-10 72.8 6.7 102 70-180 165-268 (371)
145 PRK06141 ornithine cyclodeamin 98.0 4.9E-05 1.1E-09 70.6 10.5 105 72-191 124-229 (314)
146 TIGR01915 npdG NADPH-dependent 98.0 4.3E-05 9.3E-10 67.2 9.6 105 74-185 1-106 (219)
147 PRK00045 hemA glutamyl-tRNA re 98.0 3.3E-05 7.1E-10 74.6 9.5 97 70-181 179-281 (423)
148 PRK06522 2-dehydropantoate 2-r 98.0 7.2E-05 1.6E-09 68.4 11.1 120 74-201 1-120 (304)
149 PRK14190 bifunctional 5,10-met 97.9 7.2E-05 1.6E-09 68.2 10.1 80 68-183 153-233 (284)
150 COG0059 IlvC Ketol-acid reduct 97.9 3.2E-05 6.8E-10 70.3 7.1 91 70-176 15-105 (338)
151 PRK12439 NAD(P)H-dependent gly 97.9 4.4E-05 9.6E-10 71.6 8.2 105 74-183 8-114 (341)
152 cd01079 NAD_bind_m-THF_DH NAD 97.9 0.00012 2.5E-09 63.0 9.9 93 68-181 57-157 (197)
153 KOG2380 Prephenate dehydrogena 97.9 0.00016 3.5E-09 66.7 11.3 134 74-230 53-192 (480)
154 PRK14183 bifunctional 5,10-met 97.9 7.3E-05 1.6E-09 68.0 8.9 80 68-183 152-232 (281)
155 PRK07340 ornithine cyclodeamin 97.8 0.0001 2.2E-09 68.1 9.7 96 71-182 123-219 (304)
156 PRK14982 acyl-ACP reductase; P 97.8 0.00013 2.8E-09 68.3 10.3 101 68-187 150-253 (340)
157 PRK14170 bifunctional 5,10-met 97.8 0.00015 3.3E-09 66.0 10.5 80 68-183 152-232 (284)
158 cd01078 NAD_bind_H4MPT_DH NADP 97.8 0.00013 2.8E-09 62.7 9.6 107 69-185 24-134 (194)
159 PRK14620 NAD(P)H-dependent gly 97.8 9.8E-05 2.1E-09 68.7 9.2 105 75-183 2-109 (326)
160 PRK00258 aroE shikimate 5-dehy 97.8 0.00016 3.4E-09 66.0 10.2 78 68-155 118-196 (278)
161 PF02423 OCD_Mu_crystall: Orni 97.8 0.00013 2.9E-09 67.7 9.8 99 74-184 129-228 (313)
162 PRK14177 bifunctional 5,10-met 97.8 0.00014 2.9E-09 66.3 9.2 78 68-181 154-232 (284)
163 TIGR02440 FadJ fatty oxidation 97.8 0.00036 7.8E-09 71.6 13.4 130 74-208 305-445 (699)
164 PRK14171 bifunctional 5,10-met 97.8 0.00021 4.6E-09 65.2 10.3 79 68-182 154-233 (288)
165 PRK14172 bifunctional 5,10-met 97.8 0.00023 5E-09 64.7 10.4 80 68-183 153-233 (278)
166 PRK14173 bifunctional 5,10-met 97.8 0.00016 3.5E-09 66.0 9.3 81 68-184 150-231 (287)
167 PRK14169 bifunctional 5,10-met 97.7 0.00018 3.9E-09 65.5 9.5 80 68-183 151-231 (282)
168 PRK12557 H(2)-dependent methyl 97.7 0.00011 2.3E-09 69.1 8.2 100 85-195 32-132 (342)
169 PRK14186 bifunctional 5,10-met 97.7 0.00016 3.6E-09 66.2 9.2 80 68-183 153-233 (297)
170 COG0362 Gnd 6-phosphogluconate 97.7 0.00038 8.2E-09 65.5 11.6 163 74-257 4-169 (473)
171 PRK14166 bifunctional 5,10-met 97.7 0.00017 3.7E-09 65.6 9.2 79 68-182 152-231 (282)
172 PRK11154 fadJ multifunctional 97.7 0.00047 1E-08 70.8 13.5 130 74-208 310-450 (708)
173 PRK11730 fadB multifunctional 97.7 0.00053 1.1E-08 70.5 13.6 129 74-208 314-453 (715)
174 PRK14180 bifunctional 5,10-met 97.7 0.0002 4.3E-09 65.2 9.1 78 68-181 153-231 (282)
175 PRK08618 ornithine cyclodeamin 97.7 0.00032 7E-09 65.4 10.8 96 72-181 126-222 (325)
176 PRK14187 bifunctional 5,10-met 97.7 0.00021 4.5E-09 65.5 9.2 80 68-183 155-235 (294)
177 PRK06823 ornithine cyclodeamin 97.7 0.00029 6.2E-09 65.5 9.8 95 73-181 128-223 (315)
178 TIGR00507 aroE shikimate 5-deh 97.7 0.00045 9.8E-09 62.7 10.9 112 70-197 114-229 (270)
179 PLN02516 methylenetetrahydrofo 97.7 0.00024 5.2E-09 65.2 9.0 80 68-183 162-242 (299)
180 PRK14193 bifunctional 5,10-met 97.7 0.0003 6.5E-09 64.1 9.5 112 68-236 153-267 (284)
181 PLN02616 tetrahydrofolate dehy 97.7 0.00023 5E-09 66.6 8.9 80 68-183 226-306 (364)
182 PRK14184 bifunctional 5,10-met 97.6 0.00027 5.8E-09 64.5 8.9 78 68-181 152-234 (286)
183 PRK14181 bifunctional 5,10-met 97.6 0.00034 7.3E-09 63.9 9.6 80 68-183 148-232 (287)
184 PRK09424 pntA NAD(P) transhydr 97.6 0.00028 6E-09 69.5 9.7 109 70-181 162-286 (509)
185 TIGR02441 fa_ox_alpha_mit fatt 97.6 0.00059 1.3E-08 70.4 12.4 129 74-208 336-475 (737)
186 PRK14182 bifunctional 5,10-met 97.6 0.00032 7E-09 63.8 9.2 80 68-183 152-232 (282)
187 PLN02897 tetrahydrofolate dehy 97.6 0.00027 5.8E-09 65.8 8.7 80 68-183 209-289 (345)
188 PF02153 PDH: Prephenate dehyd 97.6 0.00049 1.1E-08 62.1 10.1 127 88-230 1-133 (258)
189 PRK14174 bifunctional 5,10-met 97.6 0.00033 7.2E-09 64.2 8.9 81 68-183 154-238 (295)
190 TIGR02992 ectoine_eutC ectoine 97.6 0.00051 1.1E-08 64.1 10.4 96 72-180 128-224 (326)
191 COG0190 FolD 5,10-methylene-te 97.6 0.00026 5.6E-09 64.1 7.8 114 68-237 151-265 (283)
192 PRK06249 2-dehydropantoate 2-r 97.6 0.00045 9.8E-09 63.9 9.8 121 74-203 6-128 (313)
193 PRK06407 ornithine cyclodeamin 97.6 0.00056 1.2E-08 63.2 10.2 96 73-181 117-213 (301)
194 PRK14185 bifunctional 5,10-met 97.6 0.00046 1E-08 63.2 9.3 81 68-183 152-236 (293)
195 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.001 2.2E-08 58.9 11.3 117 69-200 27-154 (227)
196 PRK14167 bifunctional 5,10-met 97.5 0.00056 1.2E-08 62.8 9.6 81 68-183 152-236 (297)
197 TIGR02354 thiF_fam2 thiamine b 97.5 0.0004 8.6E-09 60.4 8.3 107 69-178 17-143 (200)
198 COG2423 Predicted ornithine cy 97.5 0.00069 1.5E-08 63.2 10.3 96 73-181 130-226 (330)
199 PRK13301 putative L-aspartate 97.5 0.00057 1.2E-08 61.6 9.3 104 74-197 3-113 (267)
200 PRK08291 ectoine utilization p 97.5 0.0008 1.7E-08 62.9 10.7 95 72-179 131-226 (330)
201 PRK14168 bifunctional 5,10-met 97.5 0.00048 1E-08 63.2 9.0 80 68-183 156-240 (297)
202 TIGR02437 FadB fatty oxidation 97.5 0.00081 1.8E-08 69.2 11.6 128 74-207 314-452 (714)
203 PRK07589 ornithine cyclodeamin 97.5 0.00067 1.4E-08 63.8 10.1 96 73-180 129-225 (346)
204 PF01118 Semialdhyde_dh: Semia 97.5 0.00023 5E-09 56.6 5.8 96 75-181 1-98 (121)
205 PRK06199 ornithine cyclodeamin 97.5 0.00099 2.1E-08 63.5 11.1 101 73-181 155-260 (379)
206 COG1712 Predicted dinucleotide 97.5 0.0004 8.6E-09 60.8 7.5 98 74-189 1-100 (255)
207 TIGR01921 DAP-DH diaminopimela 97.5 0.00051 1.1E-08 63.8 8.5 87 74-180 4-91 (324)
208 PRK06046 alanine dehydrogenase 97.5 0.0011 2.3E-08 62.0 10.7 95 73-181 129-224 (326)
209 TIGR01470 cysG_Nterm siroheme 97.4 0.00051 1.1E-08 59.9 7.8 93 70-179 6-99 (205)
210 COG1250 FadB 3-hydroxyacyl-CoA 97.4 0.003 6.5E-08 58.3 13.1 130 73-209 3-144 (307)
211 PRK12549 shikimate 5-dehydroge 97.4 0.0016 3.4E-08 59.7 11.1 78 70-154 124-202 (284)
212 PTZ00117 malate dehydrogenase; 97.4 0.00095 2.1E-08 62.1 9.8 131 71-205 3-151 (319)
213 PRK00676 hemA glutamyl-tRNA re 97.4 0.0007 1.5E-08 63.3 8.8 92 70-182 171-263 (338)
214 COG0373 HemA Glutamyl-tRNA red 97.4 0.00087 1.9E-08 64.1 9.5 99 70-183 175-277 (414)
215 TIGR01763 MalateDH_bact malate 97.4 0.0012 2.7E-08 61.0 9.9 127 74-205 2-147 (305)
216 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0025 5.4E-08 56.1 11.1 115 69-199 19-144 (217)
217 PLN02477 glutamate dehydrogena 97.3 0.0077 1.7E-07 57.9 15.1 117 68-200 201-329 (410)
218 PF13241 NAD_binding_7: Putati 97.3 0.0002 4.2E-09 55.5 3.4 88 70-180 4-91 (103)
219 KOG2653 6-phosphogluconate deh 97.3 0.0051 1.1E-07 57.3 13.1 162 74-257 7-173 (487)
220 PRK13940 glutamyl-tRNA reducta 97.3 0.0012 2.6E-08 63.6 9.5 96 70-181 178-274 (414)
221 cd00650 LDH_MDH_like NAD-depen 97.3 0.00059 1.3E-08 61.6 6.8 127 76-208 1-150 (263)
222 PRK12548 shikimate 5-dehydroge 97.3 0.0022 4.8E-08 58.8 10.4 80 70-154 123-209 (289)
223 PRK06718 precorrin-2 dehydroge 97.3 0.0015 3.3E-08 56.8 8.6 75 69-154 6-80 (202)
224 PRK09310 aroDE bifunctional 3- 97.3 0.0021 4.5E-08 63.2 10.5 75 68-155 327-401 (477)
225 COG1064 AdhP Zn-dependent alco 97.2 0.0013 2.8E-08 61.4 8.4 92 72-179 166-258 (339)
226 PF01408 GFO_IDH_MocA: Oxidore 97.2 0.003 6.5E-08 49.4 9.3 107 75-198 2-113 (120)
227 PRK09414 glutamate dehydrogena 97.2 0.0026 5.7E-08 61.6 10.5 122 68-200 227-362 (445)
228 COG1748 LYS9 Saccharopine dehy 97.2 0.0013 2.8E-08 62.5 7.9 102 74-185 2-104 (389)
229 cd05313 NAD_bind_2_Glu_DH NAD( 97.2 0.022 4.8E-07 51.3 15.1 122 69-200 34-172 (254)
230 PRK13303 L-aspartate dehydroge 97.1 0.0021 4.5E-08 58.3 8.6 109 74-199 2-114 (265)
231 KOG0023 Alcohol dehydrogenase, 97.1 0.001 2.2E-08 61.1 6.4 96 72-179 181-278 (360)
232 PF00185 OTCace: Aspartate/orn 97.1 0.0065 1.4E-07 50.8 10.2 105 72-180 1-120 (158)
233 smart00859 Semialdhyde_dh Semi 97.1 0.0018 3.8E-08 51.4 6.4 97 75-180 1-99 (122)
234 PF01113 DapB_N: Dihydrodipico 97.0 0.0037 8.1E-08 50.0 8.1 110 75-196 2-114 (124)
235 TIGR02356 adenyl_thiF thiazole 97.0 0.0022 4.7E-08 55.8 6.9 105 69-179 17-142 (202)
236 COG5322 Predicted dehydrogenas 97.0 0.0042 9.1E-08 55.9 8.7 108 67-188 161-269 (351)
237 PRK00048 dihydrodipicolinate r 97.0 0.0047 1E-07 55.7 9.1 66 74-153 2-69 (257)
238 PRK04207 glyceraldehyde-3-phos 97.0 0.005 1.1E-07 57.9 9.6 79 74-153 2-87 (341)
239 KOG2304 3-hydroxyacyl-CoA dehy 96.9 0.0009 2E-08 58.7 3.7 136 71-212 9-161 (298)
240 PF02558 ApbA: Ketopantoate re 96.8 0.0014 3.1E-08 53.6 4.4 121 76-203 1-123 (151)
241 TIGR02964 xanthine_xdhC xanthi 96.8 0.0068 1.5E-07 54.4 8.9 87 74-198 101-187 (246)
242 PRK12475 thiamine/molybdopteri 96.8 0.003 6.5E-08 59.3 6.8 93 69-168 20-139 (338)
243 PRK14031 glutamate dehydrogena 96.8 0.0058 1.3E-07 59.2 8.8 122 68-199 223-360 (444)
244 PTZ00082 L-lactate dehydrogena 96.8 0.0058 1.3E-07 57.0 8.6 129 71-203 4-153 (321)
245 PRK06223 malate dehydrogenase; 96.8 0.0096 2.1E-07 54.9 10.0 76 74-153 3-79 (307)
246 COG1004 Ugd Predicted UDP-gluc 96.8 0.014 3.1E-07 55.2 11.1 122 74-198 1-138 (414)
247 cd05312 NAD_bind_1_malic_enz N 96.8 0.097 2.1E-06 47.7 16.1 188 31-253 4-222 (279)
248 cd05297 GH4_alpha_glucosidase_ 96.8 0.008 1.7E-07 58.1 9.7 78 74-153 1-83 (423)
249 PRK08269 3-hydroxybutyryl-CoA 96.8 0.012 2.6E-07 54.7 10.5 109 84-195 1-128 (314)
250 PF13380 CoA_binding_2: CoA bi 96.8 0.0059 1.3E-07 48.3 7.3 100 74-200 1-104 (116)
251 COG0026 PurK Phosphoribosylami 96.8 0.0024 5.2E-08 59.8 5.6 68 73-150 1-68 (375)
252 KOG2711 Glycerol-3-phosphate d 96.8 0.0078 1.7E-07 55.8 8.8 111 71-183 19-142 (372)
253 PF00208 ELFV_dehydrog: Glutam 96.7 0.0083 1.8E-07 53.8 8.6 121 70-200 29-165 (244)
254 PRK01710 murD UDP-N-acetylmura 96.7 0.011 2.4E-07 57.7 10.0 118 70-196 11-141 (458)
255 PF03720 UDPG_MGDP_dh_C: UDP-g 96.7 0.0095 2.1E-07 46.2 7.7 84 83-179 17-100 (106)
256 cd05293 LDH_1 A subgroup of L- 96.7 0.016 3.5E-07 53.8 10.5 123 74-202 4-144 (312)
257 PRK06719 precorrin-2 dehydroge 96.6 0.009 2E-07 49.9 7.8 39 69-108 9-47 (157)
258 PLN02819 lysine-ketoglutarate 96.6 0.006 1.3E-07 64.8 8.1 77 71-154 567-658 (1042)
259 PF03435 Saccharop_dh: Sacchar 96.6 0.0032 6.9E-08 59.9 5.4 94 76-179 1-97 (386)
260 COG1648 CysG Siroheme synthase 96.6 0.0063 1.4E-07 53.3 6.8 96 69-180 8-103 (210)
261 TIGR01809 Shik-DH-AROM shikima 96.6 0.0063 1.4E-07 55.6 7.0 79 70-155 122-201 (282)
262 cd01339 LDH-like_MDH L-lactate 96.6 0.0078 1.7E-07 55.4 7.6 74 76-153 1-75 (300)
263 PRK00683 murD UDP-N-acetylmura 96.6 0.0061 1.3E-07 58.7 7.2 108 73-196 3-126 (418)
264 PRK00066 ldh L-lactate dehydro 96.6 0.0095 2.1E-07 55.4 8.0 103 72-180 5-122 (315)
265 PRK14030 glutamate dehydrogena 96.5 0.02 4.3E-07 55.5 10.3 123 68-200 223-362 (445)
266 TIGR00658 orni_carb_tr ornithi 96.5 0.12 2.5E-06 47.9 15.1 142 11-180 110-264 (304)
267 cd00757 ThiF_MoeB_HesA_family 96.5 0.0066 1.4E-07 53.7 6.6 106 69-180 17-143 (228)
268 cd00762 NAD_bind_malic_enz NAD 96.5 0.08 1.7E-06 47.6 13.2 189 31-252 4-222 (254)
269 PRK02102 ornithine carbamoyltr 96.5 0.065 1.4E-06 50.2 13.2 142 11-180 117-273 (331)
270 PRK12749 quinate/shikimate deh 96.5 0.03 6.6E-07 51.4 10.7 81 69-154 120-206 (288)
271 PRK05708 2-dehydropantoate 2-r 96.5 0.013 2.9E-07 54.0 8.4 125 74-204 3-127 (305)
272 PRK01713 ornithine carbamoyltr 96.5 0.1 2.2E-06 48.9 14.4 144 10-180 116-275 (334)
273 PF00056 Ldh_1_N: lactate/mala 96.4 0.0067 1.4E-07 49.7 5.4 76 74-153 1-78 (141)
274 PRK11579 putative oxidoreducta 96.4 0.034 7.3E-07 52.1 10.8 66 74-154 5-74 (346)
275 PTZ00079 NADP-specific glutama 96.4 0.042 9.1E-07 53.3 11.5 124 68-200 232-371 (454)
276 COG0569 TrkA K+ transport syst 96.4 0.0092 2E-07 52.8 6.5 75 74-154 1-76 (225)
277 PRK14106 murD UDP-N-acetylmura 96.3 0.041 9E-07 53.3 11.3 119 70-196 2-132 (450)
278 PRK02255 putrescine carbamoylt 96.3 0.039 8.5E-07 51.8 10.7 106 70-179 151-271 (338)
279 TIGR00670 asp_carb_tr aspartat 96.3 0.044 9.5E-07 50.7 10.7 103 70-180 147-263 (301)
280 TIGR01381 E1_like_apg7 E1-like 96.2 0.017 3.8E-07 58.1 8.3 62 27-105 307-370 (664)
281 TIGR03316 ygeW probable carbam 96.2 0.12 2.5E-06 49.0 13.3 106 70-179 167-312 (357)
282 cd05292 LDH_2 A subgroup of L- 96.2 0.02 4.4E-07 53.0 8.2 75 74-154 1-77 (308)
283 PRK00779 ornithine carbamoyltr 96.2 0.19 4E-06 46.6 14.4 139 11-180 114-265 (304)
284 PRK12862 malic enzyme; Reviewe 96.2 0.24 5.1E-06 51.5 16.4 165 16-230 160-333 (763)
285 PRK10637 cysG siroheme synthas 96.2 0.019 4.2E-07 56.1 8.2 96 69-180 8-103 (457)
286 TIGR00036 dapB dihydrodipicoli 96.2 0.028 6E-07 51.0 8.7 74 74-153 2-77 (266)
287 PRK03515 ornithine carbamoyltr 96.2 0.11 2.4E-06 48.7 12.9 143 11-179 116-274 (336)
288 COG0771 MurD UDP-N-acetylmuram 96.2 0.024 5.2E-07 55.0 8.5 132 71-211 5-157 (448)
289 PRK06019 phosphoribosylaminoim 96.1 0.0084 1.8E-07 56.9 5.4 36 73-109 2-37 (372)
290 PRK06444 prephenate dehydrogen 96.1 0.0093 2E-07 51.7 5.1 60 75-183 2-62 (197)
291 COG0281 SfcA Malic enzyme [Ene 96.1 0.11 2.4E-06 49.6 12.5 195 16-253 166-370 (432)
292 PRK07232 bifunctional malic en 96.1 0.24 5.1E-06 51.3 15.8 165 16-230 152-325 (752)
293 TIGR01850 argC N-acetyl-gamma- 96.1 0.029 6.3E-07 52.8 8.7 95 74-180 1-99 (346)
294 PRK05562 precorrin-2 dehydroge 96.1 0.026 5.5E-07 49.9 7.7 94 69-179 21-115 (223)
295 PRK08306 dipicolinate synthase 96.1 0.065 1.4E-06 49.3 10.8 107 72-201 1-117 (296)
296 PRK08644 thiamine biosynthesis 96.1 0.024 5.1E-07 49.7 7.4 98 69-169 24-141 (212)
297 PRK04284 ornithine carbamoyltr 96.0 0.15 3.2E-06 47.9 12.9 143 11-180 116-274 (332)
298 COG0334 GdhA Glutamate dehydro 96.0 0.034 7.4E-07 53.0 8.6 107 68-187 202-319 (411)
299 PRK07688 thiamine/molybdopteri 96.0 0.017 3.7E-07 54.3 6.5 97 69-168 20-139 (339)
300 PRK09496 trkA potassium transp 96.0 0.021 4.5E-07 55.3 7.4 74 74-154 1-75 (453)
301 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.023 5E-07 49.2 6.8 37 69-106 17-54 (197)
302 PLN02527 aspartate carbamoyltr 96.0 0.075 1.6E-06 49.2 10.6 102 70-179 148-265 (306)
303 PLN02968 Probable N-acetyl-gam 96.0 0.019 4.1E-07 54.8 6.8 107 71-190 36-144 (381)
304 PRK03369 murD UDP-N-acetylmura 96.0 0.022 4.8E-07 56.1 7.5 114 70-196 9-141 (488)
305 PRK09880 L-idonate 5-dehydroge 95.9 0.066 1.4E-06 49.9 10.3 96 71-181 168-267 (343)
306 TIGR03026 NDP-sugDHase nucleot 95.9 0.039 8.5E-07 53.1 9.0 89 70-179 310-409 (411)
307 PRK12562 ornithine carbamoyltr 95.9 0.17 3.7E-06 47.4 12.8 144 11-180 116-275 (334)
308 cd05291 HicDH_like L-2-hydroxy 95.9 0.034 7.3E-07 51.4 8.0 106 74-187 1-122 (306)
309 PF02254 TrkA_N: TrkA-N domain 95.9 0.045 9.7E-07 42.5 7.5 89 76-177 1-93 (116)
310 PRK08300 acetaldehyde dehydrog 95.8 0.056 1.2E-06 49.9 9.1 91 73-180 4-101 (302)
311 PF13478 XdhC_C: XdhC Rossmann 95.8 0.018 4E-07 46.9 5.3 86 76-204 1-86 (136)
312 TIGR01761 thiaz-red thiazoliny 95.8 0.13 2.8E-06 48.5 11.3 111 74-202 4-119 (343)
313 PF02629 CoA_binding: CoA bind 95.7 0.018 3.8E-07 43.8 4.6 73 74-162 4-79 (96)
314 COG0169 AroE Shikimate 5-dehyd 95.7 0.16 3.5E-06 46.4 11.5 79 69-155 122-201 (283)
315 PRK05600 thiamine biosynthesis 95.7 0.032 7E-07 53.0 7.2 98 69-169 37-155 (370)
316 PRK06270 homoserine dehydrogen 95.7 0.078 1.7E-06 49.8 9.7 121 75-199 4-145 (341)
317 PRK05690 molybdopterin biosynt 95.7 0.037 8.1E-07 49.5 7.2 105 69-179 28-153 (245)
318 PRK00141 murD UDP-N-acetylmura 95.7 0.042 9.2E-07 53.9 8.2 116 70-197 12-146 (473)
319 PRK02006 murD UDP-N-acetylmura 95.7 0.033 7.2E-07 54.9 7.5 37 70-107 4-40 (498)
320 PRK11891 aspartate carbamoyltr 95.7 0.08 1.7E-06 51.2 9.8 102 70-179 238-354 (429)
321 PRK12861 malic enzyme; Reviewe 95.7 0.52 1.1E-05 48.9 16.1 185 17-252 157-356 (764)
322 PRK14027 quinate/shikimate deh 95.6 0.12 2.6E-06 47.3 10.5 80 70-154 124-204 (283)
323 PLN02353 probable UDP-glucose 95.6 0.067 1.4E-06 52.5 9.4 115 70-190 321-455 (473)
324 PRK02472 murD UDP-N-acetylmura 95.6 0.13 2.9E-06 49.7 11.4 118 70-196 2-132 (447)
325 PRK08328 hypothetical protein; 95.6 0.042 9E-07 48.8 7.1 106 69-180 23-150 (231)
326 PRK05597 molybdopterin biosynt 95.6 0.033 7.2E-07 52.6 6.9 97 69-168 24-141 (355)
327 PRK00856 pyrB aspartate carbam 95.6 0.15 3.2E-06 47.2 11.0 93 70-179 153-261 (305)
328 PLN02520 bifunctional 3-dehydr 95.5 0.086 1.9E-06 52.5 9.9 39 69-108 375-413 (529)
329 TIGR02355 moeB molybdopterin s 95.5 0.029 6.3E-07 50.1 5.9 98 69-169 20-138 (240)
330 cd01483 E1_enzyme_family Super 95.5 0.058 1.2E-06 43.8 7.2 31 75-106 1-32 (143)
331 PRK06392 homoserine dehydrogen 95.5 0.055 1.2E-06 50.6 8.0 116 75-198 2-135 (326)
332 PLN02342 ornithine carbamoyltr 95.5 0.44 9.5E-06 44.9 14.0 139 11-180 156-307 (348)
333 PRK06153 hypothetical protein; 95.5 0.045 9.7E-07 52.1 7.3 107 70-183 173-301 (393)
334 cd01486 Apg7 Apg7 is an E1-lik 95.5 0.032 6.9E-07 51.4 6.2 100 75-180 1-140 (307)
335 PRK00421 murC UDP-N-acetylmura 95.5 0.046 9.9E-07 53.3 7.6 116 70-198 4-133 (461)
336 COG2344 AT-rich DNA-binding pr 95.4 0.014 3E-07 49.9 3.3 67 75-154 86-156 (211)
337 PRK08192 aspartate carbamoyltr 95.4 0.11 2.5E-06 48.7 9.7 75 70-151 156-233 (338)
338 TIGR01532 E4PD_g-proteo D-eryt 95.4 0.058 1.3E-06 50.4 7.7 30 75-105 1-34 (325)
339 PRK07806 short chain dehydroge 95.4 0.083 1.8E-06 46.4 8.4 38 70-108 3-41 (248)
340 TIGR03215 ac_ald_DH_ac acetald 95.4 0.084 1.8E-06 48.4 8.5 70 74-154 2-74 (285)
341 TIGR01851 argC_other N-acetyl- 95.4 0.061 1.3E-06 49.8 7.6 77 75-180 3-80 (310)
342 cd01487 E1_ThiF_like E1_ThiF_l 95.4 0.043 9.2E-07 46.5 6.2 92 75-169 1-112 (174)
343 PRK09496 trkA potassium transp 95.3 0.11 2.4E-06 50.3 9.7 99 70-179 228-330 (453)
344 PLN02602 lactate dehydrogenase 95.3 0.09 2E-06 49.6 8.8 103 74-180 38-154 (350)
345 cd05188 MDR Medium chain reduc 95.3 0.22 4.8E-06 43.6 10.9 97 71-183 133-235 (271)
346 PRK13814 pyrB aspartate carbam 95.3 0.46 1E-05 44.1 13.2 66 70-150 154-223 (310)
347 PRK00436 argC N-acetyl-gamma-g 95.3 0.073 1.6E-06 50.1 8.0 99 74-185 3-104 (343)
348 cd05294 LDH-like_MDH_nadp A la 95.2 0.19 4.1E-06 46.6 10.5 76 74-153 1-81 (309)
349 PRK01438 murD UDP-N-acetylmura 95.2 0.068 1.5E-06 52.3 8.0 119 69-196 12-146 (480)
350 PRK01390 murD UDP-N-acetylmura 95.2 0.047 1E-06 53.2 6.8 112 70-196 6-138 (460)
351 PRK05086 malate dehydrogenase; 95.2 0.13 2.9E-06 47.6 9.4 101 74-182 1-120 (312)
352 PRK04690 murD UDP-N-acetylmura 95.2 0.049 1.1E-06 53.3 6.7 116 71-196 6-139 (468)
353 cd00300 LDH_like L-lactate deh 95.2 0.14 3E-06 47.3 9.3 99 76-180 1-115 (300)
354 PRK08762 molybdopterin biosynt 95.1 0.051 1.1E-06 51.7 6.5 100 70-179 132-256 (376)
355 COG1004 Ugd Predicted UDP-gluc 95.0 0.098 2.1E-06 49.7 7.9 89 71-178 308-406 (414)
356 COG1893 ApbA Ketopantoate redu 95.0 0.11 2.4E-06 48.1 8.2 151 74-233 1-154 (307)
357 TIGR02717 AcCoA-syn-alpha acet 95.0 0.17 3.8E-06 49.3 9.8 109 70-201 4-124 (447)
358 PF03949 Malic_M: Malic enzyme 94.9 0.088 1.9E-06 47.4 7.1 187 31-252 4-222 (255)
359 PF03447 NAD_binding_3: Homose 94.9 0.041 8.9E-07 43.1 4.4 87 80-185 1-95 (117)
360 cd05290 LDH_3 A subgroup of L- 94.9 0.097 2.1E-06 48.5 7.4 77 75-154 1-78 (307)
361 PLN02948 phosphoribosylaminoim 94.9 0.058 1.3E-06 54.3 6.4 74 70-153 19-92 (577)
362 PF13460 NAD_binding_10: NADH( 94.8 0.051 1.1E-06 45.4 5.0 71 76-156 1-72 (183)
363 PRK07231 fabG 3-ketoacyl-(acyl 94.8 0.1 2.3E-06 45.6 7.1 39 70-109 2-41 (251)
364 PRK08223 hypothetical protein; 94.8 0.12 2.5E-06 47.5 7.4 98 69-168 23-142 (287)
365 PRK07411 hypothetical protein; 94.7 0.083 1.8E-06 50.6 6.7 101 69-172 34-155 (390)
366 PRK11863 N-acetyl-gamma-glutam 94.7 0.11 2.3E-06 48.3 7.2 77 74-180 3-81 (313)
367 PRK03659 glutathione-regulated 94.7 0.1 2.3E-06 52.7 7.7 96 73-181 400-499 (601)
368 PRK07200 aspartate/ornithine c 94.6 0.26 5.7E-06 47.2 9.7 78 70-151 184-269 (395)
369 PF00044 Gp_dh_N: Glyceraldehy 94.6 0.058 1.3E-06 44.8 4.6 32 75-106 2-34 (151)
370 PRK12937 short chain dehydroge 94.6 0.16 3.5E-06 44.2 7.8 37 70-107 2-39 (245)
371 PRK04148 hypothetical protein; 94.5 0.12 2.6E-06 42.0 6.3 71 72-153 16-86 (134)
372 PRK10669 putative cation:proto 94.5 0.092 2E-06 52.6 6.9 91 74-177 418-512 (558)
373 PRK07984 enoyl-(acyl carrier p 94.5 0.16 3.5E-06 45.6 7.8 35 71-106 4-41 (262)
374 PRK13529 malate dehydrogenase; 94.5 1.7 3.7E-05 43.4 15.4 202 17-253 263-499 (563)
375 PRK06349 homoserine dehydrogen 94.5 0.19 4.2E-06 48.7 8.7 108 74-199 4-124 (426)
376 TIGR01161 purK phosphoribosyla 94.4 0.058 1.3E-06 50.6 4.9 34 75-109 1-34 (352)
377 COG0673 MviM Predicted dehydro 94.4 0.19 4.1E-06 46.5 8.2 68 74-154 4-77 (342)
378 PRK15076 alpha-galactosidase; 94.4 0.19 4.1E-06 48.8 8.5 77 74-154 2-85 (431)
379 cd01338 MDH_choloroplast_like 94.4 0.31 6.8E-06 45.5 9.6 110 74-191 3-137 (322)
380 PRK04523 N-acetylornithine car 94.3 2.2 4.7E-05 40.1 15.1 78 71-152 166-252 (335)
381 PRK04308 murD UDP-N-acetylmura 94.3 0.2 4.3E-06 48.6 8.6 116 71-196 3-134 (445)
382 PRK06128 oxidoreductase; Provi 94.2 0.19 4.2E-06 45.8 7.8 36 70-106 52-88 (300)
383 PRK06701 short chain dehydroge 94.1 0.18 3.9E-06 45.9 7.4 39 69-108 42-81 (290)
384 COG3288 PntA NAD/NADP transhyd 94.1 0.15 3.2E-06 46.9 6.6 108 69-180 160-281 (356)
385 PRK07878 molybdopterin biosynt 94.1 0.13 2.9E-06 49.2 6.6 100 69-171 38-158 (392)
386 PRK11064 wecC UDP-N-acetyl-D-m 94.0 0.14 3.1E-06 49.4 6.8 70 68-153 315-395 (415)
387 PF05368 NmrA: NmrA-like famil 94.0 0.13 2.7E-06 45.1 5.9 71 76-155 1-75 (233)
388 PLN02586 probable cinnamyl alc 94.0 0.32 7E-06 45.7 8.9 96 72-181 183-279 (360)
389 COG0057 GapA Glyceraldehyde-3- 93.9 0.15 3.3E-06 47.3 6.4 32 74-105 2-34 (335)
390 TIGR01202 bchC 2-desacetyl-2-h 93.9 0.24 5.2E-06 45.4 7.8 87 72-180 144-231 (308)
391 PTZ00325 malate dehydrogenase; 93.9 0.18 3.8E-06 47.1 6.8 77 70-154 5-86 (321)
392 PRK03806 murD UDP-N-acetylmura 93.9 0.34 7.4E-06 46.8 9.1 114 70-196 3-129 (438)
393 PRK14804 ornithine carbamoyltr 93.8 2.7 5.9E-05 39.0 14.7 75 70-151 150-225 (311)
394 PRK10206 putative oxidoreducta 93.8 0.2 4.3E-06 47.1 7.2 67 75-154 3-74 (344)
395 PLN02819 lysine-ketoglutarate 93.8 0.23 4.9E-06 53.2 8.3 107 71-180 201-338 (1042)
396 PRK15182 Vi polysaccharide bio 93.8 0.36 7.7E-06 46.8 9.1 96 68-184 309-416 (425)
397 PLN00106 malate dehydrogenase 93.8 0.18 4E-06 47.0 6.9 105 71-183 16-138 (323)
398 TIGR02853 spore_dpaA dipicolin 93.8 0.79 1.7E-05 42.0 11.0 105 73-200 1-115 (287)
399 PRK13376 pyrB bifunctional asp 93.8 0.37 8.1E-06 47.8 9.3 105 68-180 169-293 (525)
400 PRK07877 hypothetical protein; 93.8 0.12 2.7E-06 53.2 6.0 97 69-169 103-220 (722)
401 PRK12550 shikimate 5-dehydroge 93.7 0.54 1.2E-05 42.8 9.6 36 73-109 122-158 (272)
402 cd08230 glucose_DH Glucose deh 93.7 0.36 7.8E-06 45.1 8.7 96 71-181 171-270 (355)
403 cd08281 liver_ADH_like1 Zinc-d 93.6 0.4 8.6E-06 45.1 9.0 37 72-109 191-228 (371)
404 PRK01368 murD UDP-N-acetylmura 93.6 0.16 3.4E-06 49.7 6.2 111 72-196 5-128 (454)
405 PLN02178 cinnamyl-alcohol dehy 93.6 0.36 7.7E-06 45.8 8.5 95 72-180 178-273 (375)
406 PLN00112 malate dehydrogenase 93.5 0.89 1.9E-05 44.3 11.2 116 74-196 101-240 (444)
407 PLN02214 cinnamoyl-CoA reducta 93.5 0.23 5.1E-06 46.3 7.1 79 70-153 7-90 (342)
408 PRK03562 glutathione-regulated 93.5 0.24 5.2E-06 50.4 7.6 93 73-178 400-496 (621)
409 cd01489 Uba2_SUMO Ubiquitin ac 93.5 1.7 3.8E-05 40.3 12.6 101 75-181 1-123 (312)
410 PRK06114 short chain dehydroge 93.5 0.18 3.9E-06 44.6 6.0 38 70-108 5-43 (254)
411 TIGR03451 mycoS_dep_FDH mycoth 93.5 0.48 1E-05 44.3 9.2 37 72-109 176-213 (358)
412 TIGR03366 HpnZ_proposed putati 93.5 0.36 7.8E-06 43.6 8.0 36 72-108 120-156 (280)
413 COG4007 Predicted dehydrogenas 93.4 0.17 3.7E-06 45.4 5.6 96 85-194 33-128 (340)
414 PF04016 DUF364: Domain of unk 93.4 0.38 8.1E-06 39.7 7.3 85 70-180 8-95 (147)
415 PRK12742 oxidoreductase; Provi 93.4 0.57 1.2E-05 40.6 8.9 36 70-106 3-39 (237)
416 cd08239 THR_DH_like L-threonin 93.3 0.46 1E-05 43.8 8.7 95 72-181 163-263 (339)
417 TIGR01087 murD UDP-N-acetylmur 93.3 0.54 1.2E-05 45.3 9.4 116 75-198 1-128 (433)
418 PRK14874 aspartate-semialdehyd 93.3 0.33 7.1E-06 45.5 7.6 90 73-180 1-94 (334)
419 cd05298 GH4_GlvA_pagL_like Gly 93.2 0.47 1E-05 46.2 8.8 126 74-202 1-165 (437)
420 PLN02272 glyceraldehyde-3-phos 93.0 0.13 2.9E-06 49.4 4.6 35 74-108 86-121 (421)
421 cd08293 PTGR2 Prostaglandin re 93.0 0.63 1.4E-05 42.9 9.1 93 73-180 155-254 (345)
422 cd01490 Ube1_repeat2 Ubiquitin 93.0 3.4 7.3E-05 40.2 14.2 31 75-106 1-37 (435)
423 COG0039 Mdh Malate/lactate deh 93.0 0.28 6E-06 45.5 6.5 80 74-156 1-83 (313)
424 cd00704 MDH Malate dehydrogena 92.9 0.59 1.3E-05 43.6 8.7 109 75-191 2-135 (323)
425 PRK05442 malate dehydrogenase; 92.9 0.81 1.8E-05 42.8 9.6 111 74-190 5-138 (326)
426 PRK06172 short chain dehydroge 92.9 0.24 5.3E-06 43.5 5.9 39 70-109 4-43 (253)
427 PLN03209 translocon at the inn 92.9 0.31 6.7E-06 48.9 7.1 38 71-109 78-116 (576)
428 TIGR01759 MalateDH-SF1 malate 92.8 0.42 9.2E-06 44.6 7.6 107 75-189 5-136 (323)
429 cd08237 ribitol-5-phosphate_DH 92.8 0.71 1.5E-05 42.9 9.2 91 72-180 163-256 (341)
430 PLN02383 aspartate semialdehyd 92.8 0.46 1E-05 44.8 7.8 90 72-180 6-100 (344)
431 PLN02514 cinnamyl-alcohol dehy 92.8 0.64 1.4E-05 43.5 8.9 97 71-181 179-276 (357)
432 PRK06728 aspartate-semialdehyd 92.7 0.47 1E-05 44.7 7.8 91 72-180 4-99 (347)
433 PF00899 ThiF: ThiF family; I 92.7 0.19 4E-06 40.4 4.5 34 73-107 2-36 (135)
434 TIGR03201 dearomat_had 6-hydro 92.7 0.77 1.7E-05 42.7 9.3 37 72-109 166-202 (349)
435 cd01491 Ube1_repeat1 Ubiquitin 92.7 0.65 1.4E-05 42.6 8.5 38 69-107 15-53 (286)
436 cd01488 Uba3_RUB Ubiquitin act 92.6 0.48 1E-05 43.6 7.5 106 75-183 1-131 (291)
437 cd05296 GH4_P_beta_glucosidase 92.6 1.1 2.4E-05 43.4 10.4 127 74-203 1-166 (419)
438 PRK05866 short chain dehydroge 92.6 0.36 7.9E-06 44.0 6.8 40 68-108 35-75 (293)
439 PRK12747 short chain dehydroge 92.6 0.61 1.3E-05 41.0 8.1 34 71-105 2-36 (252)
440 TIGR02822 adh_fam_2 zinc-bindi 92.5 0.44 9.5E-06 44.2 7.3 91 72-181 165-255 (329)
441 TIGR01832 kduD 2-deoxy-D-gluco 92.5 0.41 8.9E-06 41.9 6.8 37 70-107 2-39 (248)
442 PF00070 Pyr_redox: Pyridine n 92.5 0.28 6.1E-06 35.5 4.8 33 75-108 1-33 (80)
443 PRK08324 short chain dehydroge 92.5 0.37 8.1E-06 49.5 7.3 40 69-109 418-458 (681)
444 smart00846 Gp_dh_N Glyceraldeh 92.4 0.23 5.1E-06 41.0 4.8 31 75-105 2-33 (149)
445 PLN02427 UDP-apiose/xylose syn 92.4 0.28 6.1E-06 46.4 6.0 42 67-108 8-50 (386)
446 PRK08664 aspartate-semialdehyd 92.4 0.7 1.5E-05 43.5 8.6 31 74-104 4-35 (349)
447 PRK14851 hypothetical protein; 92.3 0.35 7.6E-06 49.6 6.9 36 69-105 39-75 (679)
448 PRK08040 putative semialdehyde 92.3 0.38 8.3E-06 45.2 6.6 90 72-180 3-97 (336)
449 CHL00194 ycf39 Ycf39; Provisio 92.2 0.32 6.9E-06 44.8 5.9 70 74-153 1-73 (317)
450 PRK02705 murD UDP-N-acetylmura 92.2 0.48 1E-05 46.0 7.4 116 75-196 2-133 (459)
451 TIGR01772 MDH_euk_gproteo mala 92.1 0.34 7.5E-06 45.0 6.0 103 75-187 1-121 (312)
452 PRK07576 short chain dehydroge 92.1 0.39 8.5E-06 42.8 6.2 39 69-108 5-44 (264)
453 PLN02740 Alcohol dehydrogenase 92.1 0.99 2.1E-05 42.7 9.3 37 71-108 197-234 (381)
454 PRK14805 ornithine carbamoyltr 92.0 5.1 0.00011 37.0 13.5 77 70-151 144-221 (302)
455 KOG2741 Dimeric dihydrodiol de 92.0 2 4.3E-05 40.3 10.6 112 74-199 7-124 (351)
456 PRK15057 UDP-glucose 6-dehydro 91.9 0.52 1.1E-05 45.2 7.2 65 71-153 294-368 (388)
457 PRK08374 homoserine dehydrogen 91.9 0.59 1.3E-05 43.9 7.4 129 74-212 3-156 (336)
458 PRK03803 murD UDP-N-acetylmura 91.9 0.22 4.9E-06 48.3 4.7 115 72-196 5-132 (448)
459 PRK07523 gluconate 5-dehydroge 91.9 0.5 1.1E-05 41.6 6.6 38 70-108 7-45 (255)
460 TIGR02825 B4_12hDH leukotriene 91.9 0.87 1.9E-05 41.8 8.4 94 72-181 138-238 (325)
461 cd05283 CAD1 Cinnamyl alcohol 91.9 0.88 1.9E-05 42.0 8.5 96 71-181 168-264 (337)
462 PLN03129 NADP-dependent malic 91.8 3.2 6.9E-05 41.7 12.6 196 16-253 288-518 (581)
463 PRK05867 short chain dehydroge 91.8 0.46 1E-05 41.8 6.3 38 70-108 6-44 (253)
464 COG0002 ArgC Acetylglutamate s 91.8 0.92 2E-05 42.5 8.3 103 74-186 3-107 (349)
465 cd01484 E1-2_like Ubiquitin ac 91.7 0.68 1.5E-05 41.2 7.3 102 75-182 1-125 (234)
466 PRK07326 short chain dehydroge 91.7 0.47 1E-05 41.1 6.2 38 71-109 4-42 (237)
467 PRK12826 3-ketoacyl-(acyl-carr 91.7 0.48 1E-05 41.3 6.3 38 70-108 3-41 (251)
468 cd01336 MDH_cytoplasmic_cytoso 91.7 0.43 9.2E-06 44.6 6.1 109 75-189 4-135 (325)
469 cd08296 CAD_like Cinnamyl alco 91.7 1.3 2.7E-05 40.9 9.3 36 72-108 163-198 (333)
470 cd05197 GH4_glycoside_hydrolas 91.6 1.3 2.9E-05 42.9 9.7 127 74-202 1-165 (425)
471 PRK08589 short chain dehydroge 91.6 0.4 8.7E-06 43.0 5.8 36 70-106 3-39 (272)
472 PRK04663 murD UDP-N-acetylmura 91.5 1.6 3.5E-05 42.2 10.3 114 71-196 4-132 (438)
473 PRK07985 oxidoreductase; Provi 91.5 0.74 1.6E-05 41.9 7.5 36 70-106 46-82 (294)
474 COG1063 Tdh Threonine dehydrog 91.5 0.91 2E-05 42.7 8.3 95 73-182 169-271 (350)
475 COG0540 PyrB Aspartate carbamo 91.5 0.62 1.3E-05 42.9 6.8 74 70-151 155-231 (316)
476 PLN03154 putative allyl alcoho 91.5 1.2 2.6E-05 41.6 9.1 95 71-180 157-258 (348)
477 COG2910 Putative NADH-flavin r 91.5 0.45 9.7E-06 40.8 5.4 72 74-155 1-73 (211)
478 COG0136 Asd Aspartate-semialde 91.4 0.59 1.3E-05 43.7 6.7 108 73-197 1-125 (334)
479 PRK07424 bifunctional sterol d 91.4 0.5 1.1E-05 45.5 6.4 80 69-153 174-254 (406)
480 TIGR01757 Malate-DH_plant mala 91.4 1.9 4.1E-05 41.3 10.3 113 74-192 45-180 (387)
481 PRK10309 galactitol-1-phosphat 91.4 1.3 2.8E-05 41.1 9.0 37 72-109 160-197 (347)
482 PRK06598 aspartate-semialdehyd 91.3 0.75 1.6E-05 43.7 7.4 107 74-197 2-126 (369)
483 PRK08628 short chain dehydroge 91.3 0.55 1.2E-05 41.4 6.3 39 70-109 4-43 (258)
484 TIGR02818 adh_III_F_hyde S-(hy 91.2 1.3 2.7E-05 41.8 8.9 38 71-109 184-222 (368)
485 PRK05678 succinyl-CoA syntheta 91.2 1.3 2.8E-05 40.8 8.6 106 73-201 8-119 (291)
486 cd08233 butanediol_DH_like (2R 91.2 1.8 3.8E-05 40.2 9.8 96 71-181 171-273 (351)
487 PRK09186 flagellin modificatio 91.2 0.69 1.5E-05 40.6 6.7 38 71-109 2-40 (256)
488 PRK06125 short chain dehydroge 91.1 0.7 1.5E-05 40.8 6.8 38 70-108 4-42 (259)
489 cd08295 double_bond_reductase_ 91.1 1.3 2.8E-05 40.9 8.8 37 71-108 150-187 (338)
490 PRK12935 acetoacetyl-CoA reduc 91.1 0.65 1.4E-05 40.6 6.5 35 71-106 4-39 (247)
491 PRK13535 erythrose 4-phosphate 91.1 0.74 1.6E-05 43.2 7.0 30 75-104 3-35 (336)
492 PRK14573 bifunctional D-alanyl 91.0 0.75 1.6E-05 48.2 7.8 112 74-198 5-130 (809)
493 PRK07792 fabG 3-ketoacyl-(acyl 91.0 0.8 1.7E-05 42.0 7.2 39 69-108 8-47 (306)
494 PTZ00317 NADP-dependent malic 91.0 5.9 0.00013 39.6 13.4 198 18-252 266-497 (559)
495 cd01485 E1-1_like Ubiquitin ac 91.0 0.32 6.9E-06 42.1 4.2 37 69-106 15-52 (198)
496 cd08234 threonine_DH_like L-th 90.9 1.2 2.6E-05 40.7 8.3 98 71-183 158-260 (334)
497 cd01337 MDH_glyoxysomal_mitoch 90.9 0.69 1.5E-05 43.0 6.6 100 74-182 1-119 (310)
498 PLN02206 UDP-glucuronate decar 90.9 0.8 1.7E-05 44.6 7.4 38 68-106 114-152 (442)
499 PRK07890 short chain dehydroge 90.9 0.59 1.3E-05 41.1 6.0 37 71-108 3-40 (258)
500 PRK06935 2-deoxy-D-gluconate 3 90.8 0.67 1.4E-05 41.0 6.4 36 70-106 12-48 (258)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=4.7e-73 Score=534.58 Aligned_cols=294 Identities=94% Similarity=1.408 Sum_probs=260.6
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.+|.+....|.+|+||||||||
T Consensus 93 ~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG 172 (386)
T PLN02306 93 MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIG 172 (386)
T ss_pred CCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999998886544457899999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+.+|++++++|||+|++||++.....+.+...++..+...+..+..+....+|+|++++||+|++|+|+|++|++
T Consensus 173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~ 252 (386)
T PLN02306 173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYH 252 (386)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhh
Confidence 99999999999634999999999998643222111111111111111111122235899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~ 240 (294)
|||++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.++.+++
T Consensus 253 lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~~~ 332 (386)
T PLN02306 253 LINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGM 332 (386)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294 (294)
Q Consensus 241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (294)
.+.+++|+.+|++|+++.|.+|.+++++++...||.++|||.|.+.||.+|+.+
T Consensus 333 ~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (386)
T PLN02306 333 ATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSKL 386 (386)
T ss_pred HHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCCcccCC
Confidence 999999999999999999999988899999999999999999999999999875
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-68 Score=490.71 Aligned_cols=240 Identities=41% Similarity=0.580 Sum_probs=221.8
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++++++||.|+|+|+.|+.+||||+++++|++.|+++.+++.+++|.|++ ..+.|.+|+|||+||||
T Consensus 73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG 149 (324)
T COG0111 73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIG 149 (324)
T ss_pred ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEEC
Confidence 489999999999999999999999999999999999999999999999999999999763 33567799999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+.+|+++ ++|||+|++||++....... ..+.....+|+++|++||+|++|+|+|++|++
T Consensus 150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 999999999996 89999999999965442111 11233457899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~ 239 (294)
|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+|++|.+++++
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~ 293 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 022672 240 MATLAALNVLGKIKGYPIWG 259 (294)
Q Consensus 240 ~~~~~~~nl~~~~~g~~~~~ 259 (294)
+..++++|+.+|++|+++.+
T Consensus 294 ~~~~~~~~i~~~l~g~~~~~ 313 (324)
T COG0111 294 VAEIVAENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999766
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.1e-66 Score=482.31 Aligned_cols=245 Identities=37% Similarity=0.555 Sum_probs=222.3
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|..+......|.+|+|||+||||
T Consensus 73 ~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG 152 (323)
T PRK15409 73 ISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVG 152 (323)
T ss_pred CceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEc
Confidence 58999999999999999999999999999999999999999999999999999999986442222347899999999999
Q ss_pred CChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672 81 AGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 159 (294)
Q Consensus 81 lG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~ 159 (294)
+|+||+.+|+++ + +|||+|++||++....... ..+. ...++++++++||+|++|+|+|++|+
T Consensus 153 ~G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~plt~~T~ 215 (323)
T PRK15409 153 MGRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIILPLTDETH 215 (323)
T ss_pred ccHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeCCCChHHh
Confidence 999999999996 6 9999999999875332110 0111 23589999999999999999999999
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCCeEEccCCCCCcHHHHH
Q 022672 160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTRE 238 (294)
Q Consensus 160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nviiTPHia~~t~~~~~ 238 (294)
++|+++.|+.||||++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.+++.
T Consensus 216 ~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRY 295 (323)
T ss_pred hccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 4799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC
Q 022672 239 GMATLAALNVLGKIKGYPIWGNPN 262 (294)
Q Consensus 239 ~~~~~~~~nl~~~~~g~~~~~~~n 262 (294)
++...+++|+.+|++|+++.+.+|
T Consensus 296 ~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 296 NMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccC
Confidence 999999999999999998887766
No 4
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2e-66 Score=478.81 Aligned_cols=245 Identities=44% Similarity=0.625 Sum_probs=222.8
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCC-CCcccCcccCCCEEEEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVI 79 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~-~~~~~g~~l~gktvGII 79 (294)
+|+||||||+++|+++||.|+|+|++++++||||+++++|++.|++.++++++|+|.|..|. .....|.+++|||+|||
T Consensus 73 ~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIi 152 (324)
T COG1052 73 RSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGII 152 (324)
T ss_pred eccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999998652 33356789999999999
Q ss_pred cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672 80 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 159 (294)
Q Consensus 80 GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~ 159 (294)
|+|+||+++|+++ ++|||+|++||+++....+. ..+..+ .+++|++++||+|++|||+|++|+
T Consensus 153 G~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~---------------~~~~~y-~~l~ell~~sDii~l~~Plt~~T~ 215 (324)
T COG1052 153 GLGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK---------------ELGARY-VDLDELLAESDIISLHCPLTPETR 215 (324)
T ss_pred CCCHHHHHHHHHH-hcCCCEEEEECCCCChHHHh---------------hcCcee-ccHHHHHHhCCEEEEeCCCChHHh
Confidence 9999999999997 69999999999987522111 111223 359999999999999999999999
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCC---eEEccCCCCCcHH
Q 022672 160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKW 235 (294)
Q Consensus 160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~n---viiTPHia~~t~~ 235 (294)
|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||.+ ++||+.++| |++|||+|+.|.+
T Consensus 216 hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~e 295 (324)
T COG1052 216 HLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE 295 (324)
T ss_pred hhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHH
Confidence 999999999999999999999999999999999999999999999999999995 678887777 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672 236 TREGMATLAALNVLGKIKGYPIWGNPN 262 (294)
Q Consensus 236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n 262 (294)
++.+|...+++|+.+|++|++..+.+|
T Consensus 296 a~~~m~~~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 296 ARKAMAELALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999998877765
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-65 Score=471.16 Aligned_cols=235 Identities=33% Similarity=0.430 Sum_probs=215.9
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCC---cccCcccCCCEEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVG 77 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~gktvG 77 (294)
+|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..|... .+.+.+|+|||+|
T Consensus 73 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvg 152 (317)
T PRK06487 73 AATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLG 152 (317)
T ss_pred cCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEE
Confidence 4899999999999999999999999999999999999999999999999999999998765321 1234689999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672 78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 157 (294)
Q Consensus 78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~ 157 (294)
|||+|.||+.+|+++ ++|||+|++||++.... . ....+|++++++||+|++|+|+|++
T Consensus 153 IiG~G~IG~~vA~~l-~~fgm~V~~~~~~~~~~------------------~---~~~~~l~ell~~sDiv~l~lPlt~~ 210 (317)
T PRK06487 153 LLGHGELGGAVARLA-EAFGMRVLIGQLPGRPA------------------R---PDRLPLDELLPQVDALTLHCPLTEH 210 (317)
T ss_pred EECCCHHHHHHHHHH-hhCCCEEEEECCCCCcc------------------c---ccccCHHHHHHhCCEEEECCCCChH
Confidence 999999999999997 79999999999863210 0 1125899999999999999999999
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccC--CCCeEEccCCCCCcH
Q 022672 158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASK 234 (294)
Q Consensus 158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~--~~nviiTPHia~~t~ 234 (294)
|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||. +|||++|||+||+|.
T Consensus 211 T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~ 290 (317)
T PRK06487 211 TRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSR 290 (317)
T ss_pred HhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCH
Confidence 999999999999999999999999999999999999999999999999999999975 79995 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Q 022672 235 WTREGMATLAALNVLGKIKGYPI 257 (294)
Q Consensus 235 ~~~~~~~~~~~~nl~~~~~g~~~ 257 (294)
++.+++...+++|+.+|++|+|+
T Consensus 291 e~~~~~~~~~~~ni~~~~~g~~~ 313 (317)
T PRK06487 291 EARQRIVGQLAENARAFFAGKPL 313 (317)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999876
No 6
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-65 Score=467.67 Aligned_cols=234 Identities=32% Similarity=0.491 Sum_probs=212.7
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCc---ccCcccCCCEEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVG 77 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~---~~g~~l~gktvG 77 (294)
.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..+.... ..+.+|+|||+|
T Consensus 70 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvG 149 (311)
T PRK08410 70 TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWG 149 (311)
T ss_pred cccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEE
Confidence 48999999999999999999999999999999999999999999999999999999986432111 124689999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672 78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 157 (294)
Q Consensus 78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~ 157 (294)
|||+|+||+.+|+++ ++|||+|++||++..... .++ ...++++++++||+|++|+|+|++
T Consensus 150 IiG~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 150 IIGLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred EECCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCch
Confidence 999999999999996 799999999998643210 011 235899999999999999999999
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCC---CCeEEccCCCCCc
Q 022672 158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASAS 233 (294)
Q Consensus 158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~---~nviiTPHia~~t 233 (294)
|+++||++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||++. +|||++ |||++|||+|++|
T Consensus 210 T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t 288 (311)
T PRK08410 210 TKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWAS 288 (311)
T ss_pred hhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCC
Confidence 9999999999999999999999999999999999999999999 9999999999975 799986 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 022672 234 KWTREGMATLAALNVLGKIKGY 255 (294)
Q Consensus 234 ~~~~~~~~~~~~~nl~~~~~g~ 255 (294)
.++.+++...+++|+.+|++|+
T Consensus 289 ~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 289 KEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999986
No 7
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=2.2e-64 Score=494.63 Aligned_cols=272 Identities=38% Similarity=0.542 Sum_probs=246.5
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.++ .+.|.+|+||||||||
T Consensus 69 ~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG 145 (525)
T TIGR01327 69 AGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIG 145 (525)
T ss_pred CCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEEC
Confidence 4899999999999999999999999999999999999999999999999999999987542 2357899999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+++|++| ++|||+|++||++....... ..+.....+++|++++||+|++|+|+|++|++
T Consensus 146 ~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 146 LGRIGSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHTPLTPETRG 209 (525)
T ss_pred CCHHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence 999999999997 79999999999864321110 01122335899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~ 240 (294)
+|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+|++|.++++++
T Consensus 210 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~ 289 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENV 289 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294 (294)
Q Consensus 241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (294)
...+++|+.+|++|+++.+.+|. |.+ .+...+...||+.++++||.+..||
T Consensus 290 ~~~~~~ni~~~~~g~~~~~~vn~--~~~-~~~~~~~~~~~~~la~riG~~a~ql 340 (525)
T TIGR01327 290 ATQVAEQVLDALKGLPVPNAVNA--PGI-DADVMEKLKPYLDLAEKLGKLAGQL 340 (525)
T ss_pred HHHHHHHHHHHHcCCCCCceeeC--CCC-CchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 444 5667778999999999999988764
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=7.8e-64 Score=465.69 Aligned_cols=246 Identities=48% Similarity=0.730 Sum_probs=223.5
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----CCCCcccCcccCCCEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTV 76 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----w~~~~~~g~~l~gktv 76 (294)
+|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.. |......|.+|+||||
T Consensus 74 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktv 153 (333)
T PRK13243 74 YAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTI 153 (333)
T ss_pred cCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEE
Confidence 589999999999999999999999999999999999999999999999999999999864 2222235679999999
Q ss_pred EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672 77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 156 (294)
Q Consensus 77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~ 156 (294)
||||+|.||+.+|++| ++|||+|++||++....... . .+. ...++++++++||+|++|+|+|+
T Consensus 154 gIiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~-----~~~-~~~~l~ell~~aDiV~l~lP~t~ 216 (333)
T PRK13243 154 GIIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------E-----LGA-EYRPLEELLRESDFVSLHVPLTK 216 (333)
T ss_pred EEECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------H-----cCC-EecCHHHHHhhCCEEEEeCCCCh
Confidence 9999999999999997 79999999999876432110 0 011 23589999999999999999999
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672 157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236 (294)
Q Consensus 157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~ 236 (294)
+|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++
T Consensus 217 ~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~ 296 (333)
T PRK13243 217 ETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEA 296 (333)
T ss_pred HHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672 237 REGMATLAALNVLGKIKGYPIWGNPNQ 263 (294)
Q Consensus 237 ~~~~~~~~~~nl~~~~~g~~~~~~~n~ 263 (294)
..++.+.+++|+.+|++|+++.+.+|.
T Consensus 297 ~~~~~~~~~~ni~~~~~g~~~~~~v~~ 323 (333)
T PRK13243 297 REGMAELVAENLIAFKRGEVPPTLVNR 323 (333)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccCH
Confidence 999999999999999999998877764
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-63 Score=461.19 Aligned_cols=234 Identities=31% Similarity=0.423 Sum_probs=212.7
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCC---cccCcccCCCEEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVG 77 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~gktvG 77 (294)
.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.++++.|..+... ...+.+|+|||+|
T Consensus 72 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvg 151 (314)
T PRK06932 72 TATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG 151 (314)
T ss_pred ecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEE
Confidence 4799999999999999999999999999999999999999999999999999999998654211 1234689999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672 78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 157 (294)
Q Consensus 78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~ 157 (294)
|||+|.||+.+|+++ ++|||+|++||+..... .. ....+|+|++++||+|++|+|+|++
T Consensus 152 IiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~-------------------~~-~~~~~l~ell~~sDiv~l~~Plt~~ 210 (314)
T PRK06932 152 VFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV-------------------CR-EGYTPFEEVLKQADIVTLHCPLTET 210 (314)
T ss_pred EECCCHHHHHHHHHH-hcCCCEEEEECCCcccc-------------------cc-cccCCHHHHHHhCCEEEEcCCCChH
Confidence 999999999999997 89999999999753210 00 1135899999999999999999999
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCcc----CCCCeEEccCCCCC
Q 022672 158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLS----EMKNAIVVPHIASA 232 (294)
Q Consensus 158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~----~~~nviiTPHia~~ 232 (294)
|+++||++.|++||||++|||+|||++||++||+++|++|+|+||+||||++||++. +||| ++|||++|||+|++
T Consensus 211 T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~ 290 (314)
T PRK06932 211 TQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWA 290 (314)
T ss_pred HhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccC
Confidence 999999999999999999999999999999999999999999999999999999874 7898 59999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCC
Q 022672 233 SKWTREGMATLAALNVLGKIKGY 255 (294)
Q Consensus 233 t~~~~~~~~~~~~~nl~~~~~g~ 255 (294)
|.++.+++...+++|+.+|++|+
T Consensus 291 t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 291 SDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999876
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-63 Score=473.79 Aligned_cols=242 Identities=31% Similarity=0.415 Sum_probs=222.8
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..+. ..+.+|.|||+||||
T Consensus 82 ~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gktvGIiG 158 (409)
T PRK11790 82 FCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKTLGIVG 158 (409)
T ss_pred CceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999976432 346799999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|+||+.+|+++ ++|||+|++||++..... .......+++|++++||+|++|+|+|++|++
T Consensus 159 ~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~------------------~~~~~~~~l~ell~~sDiVslh~Plt~~T~~ 219 (409)
T PRK11790 159 YGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL------------------GNARQVGSLEELLAQSDVVSLHVPETPSTKN 219 (409)
T ss_pred CCHHHHHHHHHH-HHCCCEEEEECCCccccc------------------CCceecCCHHHHHhhCCEEEEcCCCChHHhh
Confidence 999999999997 799999999998642110 0112345899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-----CCccCCCCeEEccCCCCCcHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASASKW 235 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nviiTPHia~~t~~ 235 (294)
+|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.+
T Consensus 220 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e 299 (409)
T PRK11790 220 MIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299 (409)
T ss_pred ccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999864 589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 022672 236 TREGMATLAALNVLGKIKGYPIWGNPNQV 264 (294)
Q Consensus 236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~~ 264 (294)
+.+++.+.+++|+.+|++|+++.+.+|..
T Consensus 300 a~~~~~~~~~~nl~~~~~~~~~~~~vn~~ 328 (409)
T PRK11790 300 AQENIGLEVAGKLVKYSDNGSTLSAVNFP 328 (409)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcceecc
Confidence 99999999999999999999999999874
No 11
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-63 Score=488.34 Aligned_cols=271 Identities=37% Similarity=0.524 Sum_probs=247.1
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.++ .+.|.+|.||||||||
T Consensus 71 ~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG 147 (526)
T PRK13581 71 AGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIG 147 (526)
T ss_pred CCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEEC
Confidence 4899999999999999999999999999999999999999999999999999999997643 2357799999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+.+|++| ++|||+|++||++....... ..+... .+++|++++||+|++|+|+|++|++
T Consensus 148 ~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 148 LGRIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHTPLTPETRG 210 (526)
T ss_pred CCHHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEccCCChHhhc
Confidence 999999999997 79999999999865321100 011222 3899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~ 240 (294)
+++++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.++++++
T Consensus 211 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~ 290 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENV 290 (526)
T ss_pred CcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294 (294)
Q Consensus 241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (294)
.+.+++|+.+|++|+++.+.+|. |.+ .+...|..+||+.++..+|.+..||
T Consensus 291 ~~~~~~ni~~~~~g~~~~~~vn~--~~~-~~~~~~~~~~~~~la~riG~~a~ql 341 (526)
T PRK13581 291 AIQVAEQVIDALRGGPVPNAVNL--PSI-TAEEAEKLKPYLDLAEKLGSLAAQL 341 (526)
T ss_pred HHHHHHHHHHHHcCCCcCceeeC--CCC-chhhhHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 555 5888899999999999999987764
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=7.6e-63 Score=464.31 Aligned_cols=249 Identities=27% Similarity=0.323 Sum_probs=224.2
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|++++++.+||||++++||++.|++..+++.+++|.|..+.. ...+.+|+||||||||
T Consensus 121 ~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG 199 (385)
T PRK07574 121 AGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVG 199 (385)
T ss_pred CCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEEC
Confidence 489999999999999999999999999999999999999999999999999999999864321 1245789999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+.+|++| ++|||+|++||++....... ...+.....+++|++++||+|++|+|+|++|++
T Consensus 200 ~G~IG~~vA~~l-~~fG~~V~~~dr~~~~~~~~--------------~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 200 AGRIGLAVLRRL-KPFDVKLHYTDRHRLPEEVE--------------QELGLTYHVSFDSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CCHHHHHHHHHH-HhCCCEEEEECCCCCchhhH--------------hhcCceecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence 999999999997 79999999999876321100 001123346899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~ 239 (294)
+|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|.+++++
T Consensus 265 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred HhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCC
Q 022672 240 MATLAALNVLGKIKGYPIWGNPNQVE 265 (294)
Q Consensus 240 ~~~~~~~nl~~~~~g~~~~~~~n~~~ 265 (294)
+.+.+++|+++|++|+++.|....|+
T Consensus 345 ~~~~~~~ni~~~~~G~~~~~~~~~~~ 370 (385)
T PRK07574 345 YAAGTREILECFFEGRPIRDEYLIVD 370 (385)
T ss_pred HHHHHHHHHHHHHcCCCCCCCceEec
Confidence 99999999999999999988876653
No 13
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-62 Score=459.21 Aligned_cols=243 Identities=26% Similarity=0.319 Sum_probs=218.5
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|+++||.|+|++|+++.+||||++++||++.|++..+++.+++|.|... .....+.+|.||||||||
T Consensus 128 ~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG 206 (386)
T PLN03139 128 AGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVG 206 (386)
T ss_pred CCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEe
Confidence 5899999999999999999999999999999999999999999999999999999997531 112346789999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|+||+.+|++| ++|||+|++||++....... ...+.....++++++++||+|++|+|+|++|++
T Consensus 207 ~G~IG~~vA~~L-~afG~~V~~~d~~~~~~~~~--------------~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 207 AGRIGRLLLQRL-KPFNCNLLYHDRLKMDPELE--------------KETGAKFEEDLDAMLPKCDVVVINTPLTEKTRG 271 (386)
T ss_pred ecHHHHHHHHHH-HHCCCEEEEECCCCcchhhH--------------hhcCceecCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence 999999999997 79999999999875321100 011122346899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~ 239 (294)
+|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+||.|.+++++
T Consensus 272 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r 351 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLR 351 (386)
T ss_pred HhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 022672 240 MATLAALNVLGKIKGYPIWG 259 (294)
Q Consensus 240 ~~~~~~~nl~~~~~g~~~~~ 259 (294)
+.+.+++|+.+|++|+++..
T Consensus 352 ~~~~~~~nl~~~~~G~~~~~ 371 (386)
T PLN03139 352 YAAGVKDMLDRYFKGEDFPA 371 (386)
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999997543
No 14
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.5e-61 Score=450.83 Aligned_cols=250 Identities=28% Similarity=0.350 Sum_probs=216.4
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCC---CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 77 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvG 77 (294)
.|+|+|+||+++|.++||.|+|+|++ ++.+||||+++++|++.|+++.+++.++++.|.. ..+.+|.|||+|
T Consensus 89 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvG 163 (347)
T PLN02928 89 FGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTLFGKTVF 163 (347)
T ss_pred CCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCCCCCEEE
Confidence 47999999999999999999999986 7899999999999999999999999999997642 245789999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh-hhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672 78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 156 (294)
Q Consensus 78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~ 156 (294)
|||+|.||+.+|++| ++|||+|++||++......... .+. ....... . ......++++++++||+|++|+|+|+
T Consensus 164 IiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 164 ILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGL-LIPNGDVDDLV--D-EKGGHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred EECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhh-ccccccccccc--c-ccCcccCHHHHHhhCCEEEECCCCCh
Confidence 999999999999997 7999999999987432111000 000 0000000 0 00134689999999999999999999
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHH
Q 022672 157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKW 235 (294)
Q Consensus 157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~ 235 (294)
+|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|++|.+
T Consensus 239 ~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~ 318 (347)
T PLN02928 239 ETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEY 318 (347)
T ss_pred HhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999864 799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCC
Q 022672 236 TREGMATLAALNVLGKIKGYPIWGN 260 (294)
Q Consensus 236 ~~~~~~~~~~~nl~~~~~g~~~~~~ 260 (294)
+.+++.+.+++|+.+|++|+|+.+.
T Consensus 319 ~~~~~~~~~~~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 319 SYRSMGKIVGDAALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCce
Confidence 9999999999999999999987654
No 15
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-62 Score=439.03 Aligned_cols=269 Identities=35% Similarity=0.487 Sum_probs=243.6
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
.|+|+||+|+++|.++||.|.|+|.+|+.++||+++++++++.|+++++...+++|+|. +..+.|.+|+|||+||+|
T Consensus 77 ag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wn---r~~~~G~el~GKTLgvlG 153 (406)
T KOG0068|consen 77 AGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWN---RVKYLGWELRGKTLGVLG 153 (406)
T ss_pred cccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCcee---ecceeeeEEeccEEEEee
Confidence 47999999999999999999999999999999999999999999999999999999865 455688999999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|+||+.+|+++ +++||+|++||+.......+ . .+. ...+++|+++.||||++|+|+||+|++
T Consensus 154 ~GrIGseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a-----~gv-q~vsl~Eil~~ADFitlH~PLtP~T~~ 216 (406)
T KOG0068|consen 154 LGRIGSEVAVRA-KAMGMHVIGYDPITPMALAE----------A-----FGV-QLVSLEEILPKADFITLHVPLTPSTEK 216 (406)
T ss_pred cccchHHHHHHH-HhcCceEEeecCCCchHHHH----------h-----ccc-eeeeHHHHHhhcCEEEEccCCCcchhh
Confidence 999999999996 89999999999886543211 0 112 246999999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC---CCCccCCCCeEEccCCCCCcHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTR 237 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~L~~~~nviiTPHia~~t~~~~ 237 (294)
|+|++.|+.||+|..+||++||++||++||++||++|+++||++|||+.||.. .+.|.++|||+.|||+|++|.|++
T Consensus 217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq 296 (406)
T KOG0068|consen 217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQ 296 (406)
T ss_pred ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999986 467999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhcccccc
Q 022672 238 EGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSR 293 (294)
Q Consensus 238 ~~~~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (294)
.+.+..+++++.+|.+| .....+|. |.| ...+-+...||+.++++||..|-+
T Consensus 297 ~~iaievaea~~~~~~~-~~~g~Vna--~~v-~~~~l~~~~~~~~~a~~l~r~~~~ 348 (406)
T KOG0068|consen 297 SRIAIEVAEAVSDYING-NSAGSVNA--PEV-ALESLTELKPNIVLAEKLGRLVPG 348 (406)
T ss_pred HHHHHHHHHHHHHHhcc-Cccceech--hhh-hhhhhhccCchhHHHHHHhhhhHH
Confidence 99999999999999999 66667777 444 567788899999999999987643
No 16
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=4.4e-60 Score=432.79 Aligned_cols=245 Identities=42% Similarity=0.619 Sum_probs=224.9
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+||||+++|++|||+|+|+|+.++.+|||++++++|.+.|++.++++++++|.| .|......|..+.||||||+|
T Consensus 91 ~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG 169 (336)
T KOG0069|consen 91 MSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILG 169 (336)
T ss_pred eecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999 677767778899999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|+||+.+|++| ++||+.+.++.++.....+. .. + . ....++++++.+||+|++|||+|++|+|
T Consensus 170 ~G~IG~~ia~rL-~~Fg~~i~y~~r~~~~~~~~-~~-~-------~------~~~~d~~~~~~~sD~ivv~~pLt~~T~~ 233 (336)
T KOG0069|consen 170 LGRIGKAIAKRL-KPFGCVILYHSRTQLPPEEA-YE-Y-------Y------AEFVDIEELLANSDVIVVNCPLTKETRH 233 (336)
T ss_pred CcHHHHHHHHhh-hhccceeeeecccCCchhhH-HH-h-------c------ccccCHHHHHhhCCEEEEecCCCHHHHH
Confidence 999999999998 78998888888765432211 11 0 1 1146899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~ 240 (294)
+||++.|.+||+|++|||++||.++|++++++||++|+|.+|+||||++||.+++||+.++|+++|||+|+.|.+++++|
T Consensus 234 liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m 313 (336)
T KOG0069|consen 234 LINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKM 313 (336)
T ss_pred HhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999966789999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCC
Q 022672 241 ATLAALNVLGKIKGYPIWGNPN 262 (294)
Q Consensus 241 ~~~~~~nl~~~~~g~~~~~~~n 262 (294)
+..++.|+.++++|+|+...++
T Consensus 314 ~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 314 AEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred HHHHHHHHHHHHccCCCCCcCC
Confidence 9999999999999999877653
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-59 Score=436.69 Aligned_cols=241 Identities=31% Similarity=0.488 Sum_probs=219.3
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+|+|+|+||+++|+++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|. |... ..+.+|+|++|||||
T Consensus 76 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG 153 (330)
T PRK12480 76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIG 153 (330)
T ss_pred cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999874 6432 346799999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+++|++| ++||++|++||++...... + .....++++++++||+|++|+|++++|++
T Consensus 154 ~G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 154 TGRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CCHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 999999999997 7999999999987643211 0 01235899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC----------C----CCccCCCCeEEc
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVV 226 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~----~~L~~~~nviiT 226 (294)
+++++.|+.||+|++|||+|||.+||++||+++|++|+|+||+||||++||++ + +|||++|||++|
T Consensus 215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT 294 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT 294 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999962 1 269999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672 227 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 262 (294)
Q Consensus 227 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n 262 (294)
||+|++|.++.+++.+.+++|+.+|++|+...+.+|
T Consensus 295 PHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 295 PHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 999999999999999999999999999999877765
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=3.3e-58 Score=427.95 Aligned_cols=243 Identities=25% Similarity=0.427 Sum_probs=219.5
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
.|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++...++.++++.|. |... ..+.+|+|++|||||
T Consensus 76 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG 153 (332)
T PRK08605 76 RSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIG 153 (332)
T ss_pred cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999884 7542 346799999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+++|++|+++||++|++||++....... ......++++++++||+|++|+|++++|++
T Consensus 154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-----------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT-----------------YVDYKDTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh-----------------hccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence 999999999997458999999999876432111 012235899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC--CCC-C-----------CccCCCCeEEc
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMK-P-----------GLSEMKNAIVV 226 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--~~~-~-----------~L~~~~nviiT 226 (294)
+++++.++.||+|++|||+|||.++|+++|+++|++|+|+||+||||+.|| +|. + +||++|||++|
T Consensus 217 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilT 296 (332)
T PRK08605 217 LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILT 296 (332)
T ss_pred hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEEC
Confidence 999999999999999999999999999999999999999999999999998 232 2 49999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672 227 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 262 (294)
Q Consensus 227 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n 262 (294)
||+|++|.++.+++...+++|+.+|++|++..+.+|
T Consensus 297 PHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 297 PHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 999999999999999999999999999999887765
No 19
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=4.7e-58 Score=422.86 Aligned_cols=239 Identities=19% Similarity=0.237 Sum_probs=209.9
Q ss_pred CccccCcccHHH-----HHhCCcEEEeCCC-CCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCC
Q 022672 1 MAVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 74 (294)
Q Consensus 1 ~g~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gk 74 (294)
+|+|+|++|.+. +..+||.|+|+++ .++.+||||+++++|++.|+++.+.+.++++.|..+ .+.+++||
T Consensus 63 ~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~ 137 (312)
T PRK15469 63 LGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDF 137 (312)
T ss_pred cccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCC
Confidence 489999998332 3458999999874 689999999999999999999999999999987532 23579999
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 154 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 154 (294)
||||||+|.||+.+|++| ++|||+|++||++.+... +. ..+....++++++++||+|++|+|+
T Consensus 138 tvgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~--~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 138 TIGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GV--QSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred EEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cc--eeecccccHHHHHhcCCEEEECCCC
Confidence 999999999999999997 799999999998653210 00 0011235899999999999999999
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCc
Q 022672 155 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS 233 (294)
Q Consensus 155 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t 233 (294)
|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+|+.|
T Consensus 201 t~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t 280 (312)
T PRK15469 201 TPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVT 280 (312)
T ss_pred CHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999975 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672 234 KWTREGMATLAALNVLGKIKGYPIWGNPNQ 263 (294)
Q Consensus 234 ~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~ 263 (294)
.+. ++...+.+|+++|++|+++.|.+|.
T Consensus 281 ~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 281 RPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 863 5889999999999999998887764
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-57 Score=417.27 Aligned_cols=234 Identities=24% Similarity=0.354 Sum_probs=208.5
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
.|+|+|+||+++|+++||.++|. |.++.+||||+++++|++.|+++.+++.+++|.|..+ .+.+|+||||||||
T Consensus 56 ~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~-----~~~~L~gktvgIiG 129 (303)
T PRK06436 56 LSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS-----PTKLLYNKSLGILG 129 (303)
T ss_pred CCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC-----CCCCCCCCEEEEEC
Confidence 48999999999999998887774 8899999999999999999999999999999987642 34689999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 160 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~ 160 (294)
+|.||+++|+++ ++|||+|++||++.... + .. ....++++++++||+|++|+|+|++|++
T Consensus 130 ~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~---~~-~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 130 YGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------G---IS-SIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred cCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------C---cc-cccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 999999999986 79999999999874320 0 00 1135899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC-CCcHHHHHH
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA-SASKWTREG 239 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia-~~t~~~~~~ 239 (294)
+|+++.|+.||+|++|||+|||+++|++||+++|++|++.||+||||++||++++. .+|||++|||++ +.|.++.++
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987542 689999999986 488999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCC
Q 022672 240 MATLAALNVLGKIKGYPIWGNPNQ 263 (294)
Q Consensus 240 ~~~~~~~nl~~~~~g~~~~~~~n~ 263 (294)
+...+++|+.+|++|++ .|.+|.
T Consensus 268 ~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 268 AVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999987 455543
No 21
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.3e-55 Score=410.91 Aligned_cols=214 Identities=30% Similarity=0.404 Sum_probs=194.5
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
+++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+. |.+|.||||||||
T Consensus 65 ~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG 123 (378)
T PRK15438 65 ATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVG 123 (378)
T ss_pred CcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEEC
Confidence 4799999999999999999999999999999999999999999851 2379999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc---
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT--- 157 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~--- 157 (294)
+|+||+.+|++| ++|||+|++|||..... . . .....++++++++||+|++|+|+|++
T Consensus 124 ~G~IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~---~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~ 183 (378)
T PRK15438 124 VGNVGRRLQARL-EALGIKTLLCDPPRADR---------------G---D-EGDFRSLDELVQEADILTFHTPLFKDGPY 183 (378)
T ss_pred cCHHHHHHHHHH-HHCCCEEEEECCccccc---------------c---c-ccccCCHHHHHhhCCEEEEeCCCCCCccc
Confidence 999999999997 79999999999753211 0 0 01236899999999999999999996
Q ss_pred -ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672 158 -TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236 (294)
Q Consensus 158 -t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~ 236 (294)
|+++++++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++||..++ ++||||||+|.+.
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~ 262 (378)
T PRK15438 184 KTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEG 262 (378)
T ss_pred ccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999988888987765 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 022672 237 REGMATLAALNVLGKIKGYPI 257 (294)
Q Consensus 237 ~~~~~~~~~~nl~~~~~g~~~ 257 (294)
..++..++.+|+.+|+ |.+.
T Consensus 263 ~~~~~~~~~~~l~~~~-~~~~ 282 (378)
T PRK15438 263 KARGTTQVFEAYSKFI-GHEQ 282 (378)
T ss_pred HHHHHHHHHHHHHHHH-cCcc
Confidence 9999999999999998 5554
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7e-55 Score=409.81 Aligned_cols=221 Identities=29% Similarity=0.384 Sum_probs=200.2
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG 80 (294)
.++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+. |.++.||||||||
T Consensus 65 ~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~---------------------g~~l~gktvGIIG 123 (381)
T PRK00257 65 CTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE---------------------GVDLAERTYGVVG 123 (381)
T ss_pred CCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc---------------------CCCcCcCEEEEEC
Confidence 4799999999999999999999999999999999999999998841 3479999999999
Q ss_pred CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc----
Q 022672 81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK---- 156 (294)
Q Consensus 81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~---- 156 (294)
+|+||+.+|+++ ++|||+|++||+..... + + .....++++++++||+|++|+|+|+
T Consensus 124 ~G~IG~~va~~l-~a~G~~V~~~Dp~~~~~-~-------------~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~ 183 (381)
T PRK00257 124 AGHVGGRLVRVL-RGLGWKVLVCDPPRQEA-E-------------G-----DGDFVSLERILEECDVISLHTPLTKEGEH 183 (381)
T ss_pred CCHHHHHHHHHH-HHCCCEEEEECCccccc-c-------------c-----CccccCHHHHHhhCCEEEEeCcCCCCccc
Confidence 999999999997 79999999999854321 0 0 0123589999999999999999999
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672 157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236 (294)
Q Consensus 157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~ 236 (294)
.|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++||+. |+++|||+||+|.+.
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~ 262 (381)
T PRK00257 184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDG 262 (381)
T ss_pred cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHH
Confidence 5999999999999999999999999999999999999999999999999999999888889985 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672 237 REGMATLAALNVLGKIKGYPIWGNPNQ 263 (294)
Q Consensus 237 ~~~~~~~~~~nl~~~~~g~~~~~~~n~ 263 (294)
..++..++.+|+.+|+.+.+.....+.
T Consensus 263 ~~r~~~~~~~nl~~~~~~~~~~~~~~~ 289 (381)
T PRK00257 263 KARGTAQIYQALCRFFGIPARVSLTDL 289 (381)
T ss_pred HHHHHHHHHHHHHHHHcCCCccchhcc
Confidence 999999999999999999876555443
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=4e-50 Score=342.89 Aligned_cols=177 Identities=42% Similarity=0.564 Sum_probs=151.5
Q ss_pred HHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHH
Q 022672 36 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 115 (294)
Q Consensus 36 l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~ 115 (294)
++++|++.|+++.+++.++++.| |......+.+++|+||||||+|.||+.+|+++ ++|||+|++||++....... .
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-~ 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-D 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH-H
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc-c
Confidence 68999999999999999999997 22233457899999999999999999999997 79999999999998754211 0
Q ss_pred hhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 116 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
. ..+ ...+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|+
T Consensus 77 ~-------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 77 E-------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp H-------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred c-------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 0 111 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCC
Q 022672 196 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA 230 (294)
Q Consensus 196 ~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia 230 (294)
+|++.||+||||++||++. +|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999986 5999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=3.9e-31 Score=240.31 Aligned_cols=240 Identities=30% Similarity=0.415 Sum_probs=209.0
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCC-CCCCc---ccCcccCCCEE
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNL---FVGNLLKGQTV 76 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-w~~~~---~~g~~l~gktv 76 (294)
+|.|+|++|+.+|.+.||.|||.|+...+.+|+-++.++|.++|+.....+.+++|.|.. |.... .....++|.++
T Consensus 102 ig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~ 181 (435)
T KOG0067|consen 102 IGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTL 181 (435)
T ss_pred eccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccce
Confidence 478999999999999999999999999999999999999999999999999999998742 22111 11246899999
Q ss_pred EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672 77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 156 (294)
Q Consensus 77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~ 156 (294)
|++|+|..|++++.+ +++||..|+.||++.....+++ .+...+.++.+++-++|.+++||-+++
T Consensus 182 g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~~---------------lg~~rVytlqd~~~~sd~~S~hc~~~~ 245 (435)
T KOG0067|consen 182 GLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDKS---------------LGLQRVYTLQDLLYQSDCVSLHCNLNE 245 (435)
T ss_pred eeeccccccceehhh-hhcccceeeeecchhhhhhhhh---------------cccceecccchhhhhccceeeecccCc
Confidence 999999999999999 6999999999999876654432 334455679999999999999999999
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC--CCCccCCCCeEEccCCCCCcH
Q 022672 157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASASK 234 (294)
Q Consensus 157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~L~~~~nviiTPHia~~t~ 234 (294)
.++++++.-.+++|++|++++|++||.++|+.+|.++|+.|++.+++ |.. ..||.+.||.++|||.+++++
T Consensus 246 ~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e 318 (435)
T KOG0067|consen 246 HNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSE 318 (435)
T ss_pred ccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhhH
Confidence 99999999999999999999999999999999999999999999998 322 258999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC---CCCCCCC
Q 022672 235 WTREGMATLAALNVLGKIKGYP---IWGNPNQ 263 (294)
Q Consensus 235 ~~~~~~~~~~~~nl~~~~~g~~---~~~~~n~ 263 (294)
.+..++.+.++..+++-+.|+- +++.+|+
T Consensus 319 ~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk 350 (435)
T KOG0067|consen 319 AASVELREVAALEIRRAITGRIPDSLRNCVNK 350 (435)
T ss_pred HHHHHHHHHHhhhhhhccCCCCchhHHHHHhh
Confidence 9999999999999998888763 4555555
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=3.5e-21 Score=184.37 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=129.8
Q ss_pred HHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHH
Q 022672 12 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 91 (294)
Q Consensus 12 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 91 (294)
...+.+|+|+|+|++++.+++|+++++++++. +..+|.+ +..+.||+++|+|+|.||+.+|++
T Consensus 210 ~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~~~LaGKtVgVIG~G~IGr~vA~r 272 (476)
T PTZ00075 210 KKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------DVMIAGKTVVVCGYGDVGKGCAQA 272 (476)
T ss_pred HCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------CCCcCCCEEEEECCCHHHHHHHHH
Confidence 33457899999999999999999999999988 3445443 247999999999999999999999
Q ss_pred HhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672 92 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 171 (294)
Q Consensus 92 L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk 171 (294)
+ ++||++|+++++.+........ .++ ...++++++++||+|++|+ .+.++|+++.|+.||
T Consensus 273 L-~a~Ga~ViV~e~dp~~a~~A~~--------------~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MK 332 (476)
T PTZ00075 273 L-RGFGARVVVTEIDPICALQAAM--------------EGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMK 332 (476)
T ss_pred H-HHCCCEEEEEeCCchhHHHHHh--------------cCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccC
Confidence 7 7999999999776543211100 111 2357999999999999985 378999999999999
Q ss_pred CCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC
Q 022672 172 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK 214 (294)
Q Consensus 172 ~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~ 214 (294)
+|++|||+||+ |++.++++|+++. ++|+++.||...
T Consensus 333 pGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 333 NNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred CCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 99999999999 7888888988754 789999999754
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.78 E-value=8.7e-19 Score=160.17 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=113.5
Q ss_pred ccccCcccHH-HHHhCCcEEE------eCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCC
Q 022672 2 AVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 74 (294)
Q Consensus 2 g~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gk 74 (294)
.+|+++.|++ +|+++||+|+ |.+.+++.++||.++.+++... +.+++|+
T Consensus 97 ~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------------------~~~l~gk 152 (287)
T TIGR02853 97 YVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------------------DFTIHGS 152 (287)
T ss_pred EEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------------------CCCCCCC
Confidence 5799999999 9999999999 9999999999999998777431 1368999
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 154 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 154 (294)
+++|+|+|.||+.+|+.| +++|++|++++++..... .. ...+.. .....+++++++++|+|++|+|.
T Consensus 153 ~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~-~~--------~~~g~~---~~~~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLA-RI--------TEMGLI---PFPLNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred EEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HHCCCe---eecHHHHHHHhccCCEEEECCCh
Confidence 999999999999999997 799999999999865321 11 011111 11234678899999999999995
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 155 DKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 155 t~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+ +++++.++.|++++++||++...
T Consensus 220 ~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 220 L-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred H-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 3 77899999999999999998743
No 27
>PLN02494 adenosylhomocysteinase
Probab=99.67 E-value=2.8e-16 Score=150.43 Aligned_cols=122 Identities=19% Similarity=0.292 Sum_probs=101.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..+.||+++|+|+|.||+.+|+++ ++||++|+++++.+......... ++. ..+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~--------------G~~-vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME--------------GYQ-VLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc--------------CCe-eccHHHHHhhCCEE
Confidence 457999999999999999999996 79999999998876432221111 111 23689999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCcceEEeeCCCCCC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR-G~~vd~~aL~~a--L~~g~i~ga~lDV~~~EP 211 (294)
+.+ ..++++++.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.++ +.+|+|+.|-
T Consensus 314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 974 45789999999999999999999999 679999999998 8998887 9999999864
No 28
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.57 E-value=1.5e-14 Score=137.41 Aligned_cols=120 Identities=27% Similarity=0.288 Sum_probs=99.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.|++|+|+|+|.||+.+|+++ +++|++|+++|+.+....... . .++ ...+++++++.+|+|+
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~---------~-----~G~-~v~~leeal~~aDVVI 255 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAA---------M-----DGF-RVMTMEEAAKIGDIFI 255 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHH---------h-----cCC-EeCCHHHHHhcCCEEE
Confidence 58999999999999999999996 799999999987664322211 1 111 2246788999999998
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeCCCC
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED 209 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g~i~ga~lDV~~~ 209 (294)
.+.. +.++++.+.+..||+|++|+|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus 256 taTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 256 TATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred ECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 7654 688899999999999999999999998 9999999999888888999999874
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.51 E-value=3.4e-14 Score=130.23 Aligned_cols=93 Identities=25% Similarity=0.285 Sum_probs=75.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..|+||||||||+|.||+++|++| +.||++|++|++..... +.. .. .++. ..+++|++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~A--------~~-----~G~~-v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EVA--------KA-----DGFE-VMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HHH--------HH-----cCCE-ECCHHHHHhcCCEE
Confidence 479999999999999999999998 79999999997653221 110 00 1122 24899999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVN 178 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN 178 (294)
++|+|+ ++++++++++.+..||+|++|+-
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence 999996 77899999999999999998874
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.51 E-value=1.5e-13 Score=126.24 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=105.7
Q ss_pred ccccCcccHHHHHhCCcEEEeCCCC------CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCE
Q 022672 2 AVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 75 (294)
Q Consensus 2 g~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gkt 75 (294)
|.+.+++| +.|+++||++.+.... ++.++||.++..++... +.++.|++
T Consensus 100 G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~------------------------~~~l~g~k 154 (296)
T PRK08306 100 GIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT------------------------PITIHGSN 154 (296)
T ss_pred ecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC------------------------CCCCCCCE
Confidence 56778888 8899999999988865 88899999776533110 13578999
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 155 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt 155 (294)
++|||+|.+|+.+++.| +.+|++|+++|++.... +. . ...+. ......++.+.++++|+|+.++|.
T Consensus 155 vlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~-~~-~-------~~~G~---~~~~~~~l~~~l~~aDiVI~t~p~- 220 (296)
T PRK08306 155 VLVLGFGRTGMTLARTL-KALGANVTVGARKSAHL-AR-I-------TEMGL---SPFHLSELAEEVGKIDIIFNTIPA- 220 (296)
T ss_pred EEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-H-------HHcCC---eeecHHHHHHHhCCCCEEEECCCh-
Confidence 99999999999999997 79999999999986542 11 1 11111 111234678889999999999983
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCC
Q 022672 156 KTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 156 ~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
.+++++.++.|++++++||++.
T Consensus 221 ----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 221 ----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ----hhhhHHHHHcCCCCcEEEEEcc
Confidence 5688999999999999999975
No 31
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.42 E-value=3.9e-13 Score=112.99 Aligned_cols=116 Identities=24% Similarity=0.263 Sum_probs=86.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|||||+|.||+.+|++| ...|.+|++||+++... +.+.+ . +.....++.|++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~--------~-----g~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALAE--------A-----GAEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHHH--------T-----TEEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhHH--------h-----hhhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 57899999999886543 22221 1 13456899999999999999999
Q ss_pred CCcccccccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672 154 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 206 (294)
Q Consensus 154 lt~~t~~li~-~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV 206 (294)
..++++.++. .+.++.+++|.++||++..+.-....+.+.+.+..+. .+|.
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 8777777662 2278889999999999999999999999999876543 4453
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.40 E-value=1.3e-12 Score=118.52 Aligned_cols=124 Identities=22% Similarity=0.171 Sum_probs=99.8
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
.+|||||+|.||..+|++| ..-|.+|++||+++.+..+.. ...+ .....+..|+.+++|+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~~--------~~~G-----a~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAELL--------AAAG-----ATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHHH--------HHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 688999999999987643321 1112 2345688899999999999999
Q ss_pred CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672 154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 211 (294)
..++.+.++. ...++.||||+++||+++.+......+.+.++++.+...--=|.-..+
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 9999888875 578999999999999999999999999999999876533222444443
No 33
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.38 E-value=3.8e-12 Score=106.00 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=75.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..+.||++.|+|||.+|+.+|+.| +++|++|++++..+-...+...++| ...+++++++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 469999999999999999999997 7999999999998876655544432 235799999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 192 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~ 192 (294)
+.+.. .+.++..+.|..||+|+++.|++.-.. +|.+.|.+
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 88865 367889999999999999999986554 56555533
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.37 E-value=5.3e-12 Score=120.70 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=104.4
Q ss_pred HHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHH
Q 022672 12 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 91 (294)
Q Consensus 12 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 91 (294)
...+.+++|.|++..+..+.-|...+.-.+....+ .+. .+..+.|++++|+|+|.||+.+|++
T Consensus 168 ~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai------~ra-----------t~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 168 KDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI------KRA-----------TNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HcCCCCCCEEecCCcccCccccccHHHHhhhHHHH------HHh-----------ccCCCCCCEEEEECCCHHHHHHHHH
Confidence 33467899999999988876554333222221111 110 1235899999999999999999999
Q ss_pred HhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672 92 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 171 (294)
Q Consensus 92 L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk 171 (294)
+ +++|++|+++|+.+........ .++. ..+++++++.+|+|+.+.. +.++|+.+.+..||
T Consensus 231 l-r~~Ga~ViV~d~dp~ra~~A~~--------------~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK 290 (425)
T PRK05476 231 L-RGLGARVIVTEVDPICALQAAM--------------DGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMK 290 (425)
T ss_pred H-HhCCCEEEEEcCCchhhHHHHh--------------cCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCC
Confidence 7 7999999999987654322110 0111 2468899999999988763 57789999999999
Q ss_pred CCcEEEEcCCCcc-cCHHHHHH
Q 022672 172 KEAILVNCSRGPV-IDEVALVE 192 (294)
Q Consensus 172 ~gailIN~aRG~~-vd~~aL~~ 192 (294)
+|++++|+++... +|.++|.+
T Consensus 291 ~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 291 DGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred CCCEEEEcCCCCCccChHHHhh
Confidence 9999999999886 77777754
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.30 E-value=1e-11 Score=113.73 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=87.7
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 154 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 154 (294)
+|||||+|.||+.+|+.| ...|++|++||+++... +.+. ..+ .....+.++++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~g-----~~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DELL--------AAG-----AVTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HCC-----CcccCCHHHHHhcCCEEEEecCC
Confidence 489999999999999998 57899999999986442 2211 111 12345788999999999999998
Q ss_pred Cccccccc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 155 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 155 t~~t~~li-~-~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
++.++.++ . ...+..+++|+++||+++....+..++.+.+++..+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 77777664 3 3467789999999999999998889999999876544
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.30 E-value=1.1e-11 Score=113.65 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=93.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|||||+|.||+.+|+.| ...|.+|++||++.... +.+. ..+ .....++++++++||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEVI--------AAG-----AETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence 4799999999999999998 57899999999986542 1111 111 1234678999999999999999
Q ss_pred CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672 154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 211 (294)
.+.+++.++. .+.+..+++|.++||+++.......++.+.+.+..+...---|+..+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8777777663 346788999999999999999888899999887655443333554443
No 37
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.28 E-value=1e-11 Score=100.77 Aligned_cols=35 Identities=43% Similarity=0.622 Sum_probs=32.1
Q ss_pred CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHH
Q 022672 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA 35 (294)
Q Consensus 1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~ 35 (294)
.|+|+|+||+++|+++||.|+|+||+++.+||||+
T Consensus 67 ~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 67 AGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp SSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred cccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 48999999999999999999999999999999999
No 38
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.25 E-value=4.1e-11 Score=110.29 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=89.9
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 151 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 151 (294)
+|||||+|.||+.+|++| ...|.+|++||++.+.. +.+. .. +.....+.++++++ +|+|++|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~-----g~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVAG--------KL-----GITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHH--------HC-----CCeecCCHHHHHHhCCCCCEEEEE
Confidence 699999999999999998 57899999999986542 2211 11 12334688898876 6999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 205 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD 205 (294)
+|..+.++.++ .+.+..+++|.++||+++....+..++.+.+++..+. .+|
T Consensus 67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 99766777777 4677889999999999999999999999999876653 366
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.25 E-value=3e-11 Score=111.07 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=89.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|||||+|.||.++|+.| ...|.+|++||+++... +.+. ..+ .....+..+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~--------~~g-----~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALV--------DKG-----ATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HcC-----CcccCCHHHHHhcCCEEEEecC
Confidence 4799999999999999998 47799999999986542 2211 111 1234688899999999999999
Q ss_pred CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
.....+.++. ...+..+++|.++||++++.+.....+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 7666666653 3467789999999999999999999999999887655
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.16 E-value=2.1e-10 Score=105.75 Aligned_cols=114 Identities=21% Similarity=0.263 Sum_probs=89.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l 150 (294)
++|||||+|.||+.+|+.| ...|.+|.+||+++... +.+. .. +.....+++++++. +|+|++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~-----g~~~~~~~~e~~~~~~~~dvvi~ 65 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EALA--------EE-----GATGADSLEELVAKLPAPRVVWL 65 (301)
T ss_pred CEEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HC-----CCeecCCHHHHHhhcCCCCEEEE
Confidence 3799999999999999998 57899999999987543 2211 11 12234688888876 699999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 205 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD 205 (294)
++|..+.+..++ ...+..+++|.++||++++.......+.+.+++..+. .+|
T Consensus 66 ~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d 117 (301)
T PRK09599 66 MVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD 117 (301)
T ss_pred EecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence 999766777776 4677889999999999999999999999999887655 346
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.12 E-value=1.9e-10 Score=106.68 Aligned_cols=119 Identities=22% Similarity=0.186 Sum_probs=82.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..|.|++|||||+|+||+++|+.| +.+|++|+++++......+... . .++. ..+.++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~A~--------~-----~G~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKKAE--------A-----DGFE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHHHH--------H-----CCCe-eCCHHHHHhcCCEE
Confidence 468999999999999999999998 6899999988765433221110 0 1122 24889999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 212 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 212 (294)
++++|.+.. ..+++++.+..|++|++| -.+-|--+.. + ...-+..+||+-..|-
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~--~------~~~p~~~~~Vi~vaPn 131 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF--G------QIVPPADVDVIMVAPK 131 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh--c------eeccCCCCcEEEeCCC
Confidence 999996544 677777888899999988 4555521111 1 0112345677777764
No 42
>PLN02712 arogenate dehydrogenase
Probab=99.11 E-value=3e-10 Score=114.82 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=85.0
Q ss_pred ccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-c
Q 022672 66 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-E 144 (294)
Q Consensus 66 ~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~ 144 (294)
..+.++.+++|||||+|.||+++|+.| +.+|++|++||+.... +.. ...+ .....++++++. .
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~--~~a--------~~~G-----v~~~~~~~el~~~~ 425 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYS--DEA--------QKLG-----VSYFSDADDLCEEH 425 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHH--HHH--------HHcC-----CeEeCCHHHHHhcC
Confidence 456788999999999999999999998 6889999999987432 110 0111 123467888876 5
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+|+|++|+| ...+..++.+-....||+|++++|++.++-...+.+.+.+..
T Consensus 426 aDvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 426 PEVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred CCEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 999999999 467777776555557999999999999885555555555544
No 43
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.11 E-value=4e-10 Score=109.91 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=99.6
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 151 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 151 (294)
+|||||+|.||+.+|++| ...|.+|.+||++.... +.+.+.. ...+.. ......+++|+++. +|+|++|
T Consensus 8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~--~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKV-DETVERA----KKEGNL--PLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHhh----hhcCCc--ccccCCCHHHHHhcCCCCCEEEEE
Confidence 699999999999999998 47899999999987653 2222210 000111 11234688898876 9999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 211 (294)
+|..+.+..++ ...+..|++|.++||+++...-+...+.+.+++..+.....=|.-.++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99888888888 578889999999999999999999999999998887766666676554
No 44
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.09 E-value=6.4e-10 Score=106.20 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=82.0
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
+..+.|++|+|+|+|.||+.+|+.+ +++|++|+++|+.+...... .. .++ ...++++.++.+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~-----~G~-~~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AM-----EGY-EVMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------Hh-----cCC-EEccHHHHHcCCCE
Confidence 3457999999999999999999986 89999999998876442211 01 111 12356788899999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 192 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~ 192 (294)
|+.+.. +.++++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 998764 466788888999999999999999876 88777764
No 45
>PLN02256 arogenate dehydrogenase
Probab=99.06 E-value=3.5e-09 Score=97.76 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=78.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~ 149 (294)
-.+++|||||+|.||+++|+.| +..|.+|++||++.... . .. ..+ +....++++++ .++|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~--~-a~-------~~g-----v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSD--I-AA-------ELG-----VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHH--H-HH-------HcC-----CeeeCCHHHHhhCCCCEEE
Confidence 3567999999999999999998 57899999999875321 1 10 111 12345788876 4799999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+|+|. ..+..++.+-....+++++++++++.++-+..+++.+.+..
T Consensus 98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 99994 45666664432566899999999999765556666665543
No 46
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.04 E-value=1.2e-09 Score=100.43 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=87.0
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 154 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 154 (294)
+|||||+|.||..+|+.| ...|.+|++||+.+.. +.+. ..+ .....+..+++++||+|++|+|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~--------~~g-----~~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELL--------SLG-----AVSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence 699999999999999998 5778999999987531 2211 111 22346788999999999999997
Q ss_pred Ccccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672 155 DKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 205 (294)
Q Consensus 155 t~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD 205 (294)
.++.+.++. ...+..+++|.++|+++....-....+.+.+++..+. .+|
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 766666653 2356778999999999999998888999988876543 455
No 47
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.04 E-value=1.1e-09 Score=106.61 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=98.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l 150 (294)
.+|||||+|.||+.+|++| ...|.+|.+||++.+.. +.+.+. ............+++|+++ ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~-~~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKT-EEFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 57899999999987653 222110 0000111224568999886 5899999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 211 (294)
++|....+..++ .+.+..+++|.++|+++.+..-|...+.+.+.+..+.....=|...++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888888888 567888999999999999999999999999998877755555565543
No 48
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.99 E-value=3.4e-09 Score=97.58 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=84.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 150 (294)
++|||||+|.||..+|+.| ...|.+|.+||+++... +.+. ..+. ....+++++ ++++|+|++
T Consensus 1 M~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l~--------~~g~-----~~~~s~~~~~~~~~~~dvIi~ 65 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAMK--------EDRT-----TGVANLRELSQRLSAPRVVWV 65 (298)
T ss_pred CEEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHH--------HcCC-----cccCCHHHHHhhcCCCCEEEE
Confidence 3799999999999999998 47899999999987542 2211 1111 112455554 456899999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
++|.. .+..++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 99965 667776 5677889999999999999989999999988876654
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=98.99 E-value=1.8e-09 Score=116.61 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=94.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
..++|||||+|.||..||++| ...|.+|.+||+++... +.+. ..+ .....+..|+.++||+|++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~--------~~G-----a~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKFC--------ELG-----GHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEE
Confidence 456899999999999999998 47899999999986542 2221 112 23457899999999999999
Q ss_pred cCCCccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672 152 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 206 (294)
Q Consensus 152 ~Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV 206 (294)
+|..+..+.++ ....++.+++|.++|++|+.+.-....+.+.+++..-....+|.
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 99888888776 35678889999999999999999999999999876511234553
No 50
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.97 E-value=6.5e-09 Score=100.60 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=91.9
Q ss_pred CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+||| +|.||+++|+.| +..|.+|++||++..... .... ..+ .....+.++.+.+||+|++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~-~~a~-------~~g-----v~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGK-EVAK-------ELG-----VEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHH-HHHH-------HcC-----CeeccCHHHHhccCCEEEEec
Confidence 4799997 999999999997 678999999998764321 1111 111 123357788899999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC--CCCCccCCCCeEEccCC
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI 229 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~~~nviiTPHi 229 (294)
|. +.+..++ ++....+++++++++++..+....+++.+.+..+ ..+...-|. |..+++.-..+++||+-
T Consensus 67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~------~~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG------VEILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC------CEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 94 4455555 5666778999999999976655555555554332 122223354 33457777889999975
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=98.97 E-value=2.4e-09 Score=115.67 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=89.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
..++|||||+|.||..+|++| ...|++|++||+++... +.+. ..+ .....+..+++++||+|++|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~G-----a~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRFE--------NAG-----GLAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEe
Confidence 347899999999999999998 58899999999986542 2211 111 12346889999999999999
Q ss_pred cCCCccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 152 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 152 ~Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+|..++++.++ +...+..+++|.++|+++..+.-....+.+.+++
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 99888888877 3567888999999999999998888899888877
No 52
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.93 E-value=3.5e-09 Score=96.99 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=84.2
Q ss_pred EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672 78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 157 (294)
Q Consensus 78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~ 157 (294)
|||+|.||.++|+.| ...|.+|++||++.... +.+. ..+ .....++.+++++||+|++|+|...+
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~g-----~~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EEAV--------AAG-----AQAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence 689999999999998 57899999999986542 2211 111 22346889999999999999997666
Q ss_pred cccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672 158 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 205 (294)
Q Consensus 158 t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD 205 (294)
.+.++. ...+..+++|.++||++..+.-....+.+.+++..+. .+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 666662 4567789999999999988877777888888765544 456
No 53
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.92 E-value=5.5e-09 Score=101.66 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=91.9
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEEcc
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLHP 152 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~~ 152 (294)
|||||+|.||+.+|++| ...|.+|++||++.... +.+.+ ............++++++ +++|+|++++
T Consensus 2 IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~--------~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v 71 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLA--------EHAKGKKIVGAYSIEEFVQSLERPRKIMLMV 71 (467)
T ss_pred EEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHh--------hccCCCCceecCCHHHHHhhcCCCCEEEEEC
Confidence 89999999999999998 57799999999987653 22221 100000112345677766 4689999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 210 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E 210 (294)
|..+.+..++ .+.+..+++|.++||++....-+...+.+.+.+..+.....=|...+
T Consensus 72 ~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 72 KAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred CCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 9767777777 56778899999999999999999999999998877664444455544
No 54
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.91 E-value=3.6e-09 Score=95.39 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=91.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
-+.++||+||+|.||..++..| -..|.+|++||++.+.. ..|.+ ++ .....+..|+.+.||+|+.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~-~~f~~--------~G-----a~v~~sPaeVae~sDvvit 97 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKC-KEFQE--------AG-----ARVANSPAEVAEDSDVVIT 97 (327)
T ss_pred cccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHH-HHHHH--------hc-----hhhhCCHHHHHhhcCEEEE
Confidence 3578999999999999999998 58999999999987653 22222 22 2345789999999999999
Q ss_pred ccCCCcccccccc--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCc
Q 022672 151 HPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPM 199 (294)
Q Consensus 151 ~~Plt~~t~~li~--~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i 199 (294)
++|...+.+.++. ...++.+++|... |+.++-+.--...|.++++....
T Consensus 98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 9998888888773 4577888888777 89999888888888888877643
No 55
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.91 E-value=1.4e-08 Score=92.58 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=65.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|||||+|.||+++|+.| +..|.+|++||++.... +.. ...+... ....+. +.+++||+|++|+|
T Consensus 1 m~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~-~~a--------~~~g~~~---~~~~~~-~~~~~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTC-ERA--------IERGLVD---EASTDL-SLLKDCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHCCCcc---cccCCH-hHhcCCCEEEEcCC
Confidence 3799999999999999998 56799999999876542 111 1111111 111234 46789999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
. .....++ ++....+++++++++++.-+
T Consensus 67 ~-~~~~~~~-~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 67 I-GLLLPPS-EQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred H-HHHHHHH-HHHHHhCCCCcEEEeCcchH
Confidence 4 3334433 56667789999999997654
No 56
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.90 E-value=5.7e-09 Score=96.65 Aligned_cols=98 Identities=24% Similarity=0.258 Sum_probs=68.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
|+||+|||||+|+||+++|+.| +.+|++|+++++......+... .. ++. ..+.++++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~--------~~-----Gv~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT--------ED-----GFK-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH--------HC-----CCE-ECCHHHHHhcCCEEEE
Confidence 5789999999999999999998 6889988766544332222211 11 122 2468889999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 185 (294)
++|... ....+.++....|+++. +|.++-|=-+
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence 999332 34455566778888886 7777776433
No 57
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.87 E-value=2.6e-08 Score=92.45 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=83.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH--HHHhhhhhhhhhcCCC----CccccccCCHHHHhhcCCE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV 147 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi 147 (294)
++|||||.|.||..+|..++ ..|++|+.||+++..... ......-..+...+.. ........++++.+++||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999999999999999974 789999999998653211 1111111111111100 0112345689999999999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
|+-++|...+.+..+-++..+.++++++| .++.. -+...++.+.++.
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~ 133 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH 133 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC
Confidence 99999999988888888888999999854 44444 3466777777743
No 58
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.87 E-value=2e-08 Score=92.81 Aligned_cols=141 Identities=21% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
.++|+|||+|.||+.+|+.| +..| .+|++||++.... +.. ...+. ......++++.+++||+|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~a--------~~~g~---~~~~~~~~~~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-ARA--------RELGL---GDRVTTSAAEAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HHH--------HhCCC---CceecCCHHHHhcCCCEEEE
Confidence 46899999999999999997 4556 4899999976532 111 11111 11123567888999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC---CCCC-C--C-CCccCCCCe
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---DEPY-M--K-PGLSEMKNA 223 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~---~EP~-~--~-~~L~~~~nv 223 (294)
|+|. ..+..++ ++....++++.++++++..+.--.+++.+.+.. .+. .+.... .|-. + . ..|+.-.++
T Consensus 73 avp~-~~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~ 147 (307)
T PRK07502 73 CVPV-GASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWC 147 (307)
T ss_pred CCCH-HHHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence 9994 3333333 455667899999999866542222222222221 111 233221 1110 1 1 246666788
Q ss_pred EEccCCCC
Q 022672 224 IVVPHIAS 231 (294)
Q Consensus 224 iiTPHia~ 231 (294)
++||+-++
T Consensus 148 ~l~~~~~~ 155 (307)
T PRK07502 148 ILTPPEGT 155 (307)
T ss_pred EEeCCCCC
Confidence 99997554
No 59
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.87 E-value=1.9e-08 Score=94.99 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=82.8
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
+...||+|||+ |.||+++|+.|.+.++.+|++||+... ...++++.+++||+|+
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 34679999999 999999999984346999999997421 1246788899999999
Q ss_pred EccCCCccccccccHHHH---hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC---CCccCCCCe
Q 022672 150 LHPVLDKTTYHLINKERL---ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---PGLSEMKNA 223 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l---~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~---~~L~~~~nv 223 (294)
+|+|. ..+..++ ++.. ..+++++++++++.-+. ...+++..... ++...=|... +.+++-.++
T Consensus 57 lavPv-~~~~~~l-~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~ 125 (370)
T PRK08818 57 FSAPI-RHTAALI-EEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVM 125 (370)
T ss_pred EeCCH-HHHHHHH-HHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeE
Confidence 99993 4455555 3332 24899999999977552 12222222111 2333446532 356777789
Q ss_pred EEccC
Q 022672 224 IVVPH 228 (294)
Q Consensus 224 iiTPH 228 (294)
++||.
T Consensus 126 iltp~ 130 (370)
T PRK08818 126 VVCEA 130 (370)
T ss_pred EEeCC
Confidence 99986
No 60
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=8.9e-08 Score=87.64 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=82.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh---hhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||+|.||..+|..| ...|.+|++||+++... +.......... ...+... .......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 5799999999999999998 46799999999986542 22111100000 0000000 0112346788999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~ 207 (294)
++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+ ..+.+.++. .-+..++..+
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 9999999999976665555545666778999877 78877444 456555532 2334566655
No 61
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.86 E-value=1.3e-08 Score=93.79 Aligned_cols=103 Identities=30% Similarity=0.420 Sum_probs=85.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.||++.|.|||.+|+.+|+++ ++.|++|+++.-.+-...+...++| .+..++|....+|+++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi 269 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV 269 (420)
T ss_pred eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence 58999999999999999999997 8999999998776655555444432 3467999999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 192 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~ 192 (294)
.+.- ++++|..+.|..||+|+++.|.+.=.+ ||...|.+
T Consensus 270 T~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 270 TATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred EccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence 9875 688999999999999999999987666 67666653
No 62
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.85 E-value=3.5e-08 Score=95.11 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=91.7
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh-------hhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-------QFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
.+|||||+|.||..+|..|+ . |.+|++||++.... +.+..+.. +.+... +.....+..+.+++||
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~~G~~~~~e~~~~~l~~~-----g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELKNGVDVNLETTEEELREA-----RYLKFTSEIEKIKECN 78 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHHCcCCCCCCCCHHHHHhh-----CCeeEEeCHHHHcCCC
Confidence 68999999999999999975 3 69999999987543 32221100 000000 0011223335689999
Q ss_pred EEEEccCCCc------cccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcce-EEeeCCCCCCCCC
Q 022672 147 VISLHPVLDK------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFR-VGLDVFEDEPYMK 214 (294)
Q Consensus 147 iV~l~~Plt~------~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL-~~--g~i~g-a~lDV~~~EP~~~ 214 (294)
++++|+|... +...++ .+...+.+++|.++|+.|+-.+-..+.+++.+ ++ |...+ ...=+|.+||+..
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~ 158 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINP 158 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCC
Confidence 9999999542 223444 24567889999999999999998888765544 33 22111 1112477899853
Q ss_pred ----CCccCCCCeEE
Q 022672 215 ----PGLSEMKNAIV 225 (294)
Q Consensus 215 ----~~L~~~~nvii 225 (294)
..+.+.|.++.
T Consensus 159 G~a~~~~~~~~riv~ 173 (425)
T PRK15182 159 GDKKHRLTNIKKITS 173 (425)
T ss_pred CcccccccCCCeEEE
Confidence 34667777764
No 63
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.85 E-value=5e-08 Score=89.58 Aligned_cols=117 Identities=25% Similarity=0.245 Sum_probs=77.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH--HHhhhhhhhhhcCCCC-------cc-ccccCCHHHHhh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR 143 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~ 143 (294)
++|||||+|.||..+|+.| ...|++|++||++....... .....-+.+...+... .+ .....+. +.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 5899999999999999998 47799999999987543210 0000000011111000 00 1122344 5679
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~ 195 (294)
+||+|+.|+|..++.+..+-++....++++++|+ |+|.-. ...+.+.+.
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 9999999999888888887777778899999887 776654 445655554
No 64
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.85 E-value=3.4e-08 Score=95.05 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=75.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH------------
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 141 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------ 141 (294)
++|+|||+|.||..+|..| ...|.+|++||+++.... ... .+..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~v~-~l~---------~g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHAVD-TIN---------RGEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHHHH-HHH---------CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence 6899999999999999998 467999999998765432 211 111111 11233333
Q ss_pred ---hhcCCEEEEccCCC------ccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 142 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 142 ---l~~aDiV~l~~Plt------~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+++||+|++|+|.. ++...+. -+.....+++|+++|+.|.-.+-..+.+...+.+
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 24799999999943 1222222 2456778999999999999888778888777765
No 65
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.85 E-value=7.5e-09 Score=95.68 Aligned_cols=83 Identities=24% Similarity=0.332 Sum_probs=66.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+++|||||+|.||+++|++| ...|.+|.+|+++.. .+++++++++|+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 457899999999999999998 578999999997532 3678889999999999
Q ss_pred cCCCccccccccHHHHh-cCCCCcEEEEcCCCcc
Q 022672 152 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 184 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~-~mk~gailIN~aRG~~ 184 (294)
+|. +..+.++ ++... .+++++++|++++|-.
T Consensus 55 vp~-~~~~~v~-~~l~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 55 VSM-KGVRPVA-EQVQALNLPPETIIVTATKGLD 86 (308)
T ss_pred CCh-HHHHHHH-HHHHHhcCCCCcEEEEeCCccc
Confidence 996 4666666 33323 4788999999988543
No 66
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.85 E-value=1.2e-08 Score=77.76 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=62.0
Q ss_pred EEEEEcCChHHHHHHHHHhhcCC---CEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
||||||+|+||+++++.| ...| .+|+ +++++++.. .++.+.++ ... ...+..|++++||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~~----------~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEYG----------VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHCT----------TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhhc----------ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999998 5778 8998 458877543 22222111 111 12278899999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
|+| |+...-+.++. ....++.++|++.-|
T Consensus 68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 999 44333333444 666789999988643
No 67
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.83 E-value=2.6e-08 Score=94.03 Aligned_cols=139 Identities=18% Similarity=0.126 Sum_probs=85.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|+|||+|.||+++|+.| +..|.+|.+|++........... + .........++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~a~---------~-~~~~~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLARAL---------G-FGVIDELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHHHh---------c-CCCCcccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999998 57787777776654432111000 1 01111123578889999999999999
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC----------CCccCCCC
Q 022672 154 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN 222 (294)
Q Consensus 154 lt~~t~~li~~~~l~-~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----------~~L~~~~n 222 (294)
. ..+..++ ++... .+++++++++++.-+.-..+++.+.+.. ... .++.. |.+. ..|+.-..
T Consensus 70 ~-~~~~~vl-~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~ 141 (359)
T PRK06545 70 V-DATAALL-AELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGGH---PMAGSHKSGVAAARADLFENAP 141 (359)
T ss_pred H-HHHHHHH-HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEeeC---CcCcCchhhHHHhcHHHHCCCc
Confidence 5 4555555 34444 4889999999987664333333332211 111 22322 4432 13666677
Q ss_pred eEEccCCCC
Q 022672 223 AIVVPHIAS 231 (294)
Q Consensus 223 viiTPHia~ 231 (294)
.++||+-..
T Consensus 142 ~il~~~~~~ 150 (359)
T PRK06545 142 WVLTPDDHT 150 (359)
T ss_pred EEEecCCCC
Confidence 899997543
No 68
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.81 E-value=1.3e-08 Score=84.66 Aligned_cols=95 Identities=29% Similarity=0.302 Sum_probs=63.1
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
|+||+|+|||||..|++-|..| +..|++|++-.+..+...+... . .++ ...+++|.+++||+|++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~--------~-----~Gf-~v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAK--------A-----DGF-EVMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHH--------H-----TT--ECCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHH--------H-----CCC-eeccHHHHHhhCCEEEE
Confidence 6899999999999999999998 7899999877665543322211 1 122 34689999999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
.+|. .....++.++....||+|+.|+ .+.|
T Consensus 67 L~PD-~~q~~vy~~~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 67 LLPD-EVQPEVYEEEIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp -S-H-HHHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred eCCh-HHHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence 9993 2334445677888999999877 3444
No 69
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.79 E-value=7.5e-08 Score=87.72 Aligned_cols=137 Identities=23% Similarity=0.231 Sum_probs=87.9
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEE--EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhcCCEEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 149 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~ 149 (294)
-++|+|+|+|.||+++|+.| +.-|..+ +++|++....... ...........+. .+.+.++|+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence 36899999999999999997 5666655 6666655432211 1111212222233 67778899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC----CCccCCCCeEE
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV 225 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~L~~~~nvii 225 (294)
+++|- ..|..++ ++....+|+|+++++++.-+---.+++.+.+.++. .+...=|+.. .+++....+++
T Consensus 70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vl 141 (279)
T COG0287 70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVL 141 (279)
T ss_pred EeccH-HHHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEE
Confidence 99993 5556555 55555899999999998766444444444442211 2334456532 36888888999
Q ss_pred ccCCC
Q 022672 226 VPHIA 230 (294)
Q Consensus 226 TPHia 230 (294)
||.-.
T Consensus 142 tp~~~ 146 (279)
T COG0287 142 TPSEG 146 (279)
T ss_pred cCCCC
Confidence 99644
No 70
>PLN02712 arogenate dehydrogenase
Probab=98.79 E-value=1.7e-08 Score=102.25 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=71.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV 148 (294)
.-+-++|||||+|.||+.+|+.| +.+|++|++||++.... . .. . .+.....++++++ .++|+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-A~-------~-----~Gv~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSL--A-AR-------S-----LGVSFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH--H-HH-------H-----cCCEEeCCHHHHhhcCCCEE
Confidence 34557899999999999999998 67899999999874321 1 10 1 1122345788866 569999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
++|+|. ..+..++..-.+..|+++++|+|++.-+
T Consensus 113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence 999994 5677777554446789999999997544
No 71
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.76 E-value=1.5e-08 Score=96.71 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=66.6
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC------chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 142 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 142 (294)
..|.||||+|||+|.+|++-|..| +-.|++|++--|. ..+. +. +.. .++ ...+++|++
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~-~k--------A~~-----dGF-~v~~~~Ea~ 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASW-RK--------ATE-----NGF-KVGTYEELI 95 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchH-HH--------HHh-----cCC-ccCCHHHHH
Confidence 469999999999999999777765 5677777632211 1111 10 000 122 236899999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILV 177 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI 177 (294)
++||+|++++|++ . ++.+.++.+..||+|+.|.
T Consensus 96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 9999999999987 3 7777899999999999886
No 72
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=3.7e-07 Score=83.58 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=92.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh---hhhhhhhcCCCC---------ccccccCCHHHH
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---YGQFLKANGEQP---------VTWKRASSMDEV 141 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~l~el 141 (294)
++|+|||.|.||..+|..++ ..|.+|+.||++.... +...+. ........+... .......++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 58999999999999999974 6799999999876532 111110 000000000000 112235688899
Q ss_pred hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCC
Q 022672 142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK 221 (294)
Q Consensus 142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~ 221 (294)
++.||+|+.|+|...+.+.-+-++..+.++++++|+..+.+ .....+.+.+.... +..++-- ..|.+..+
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~ 151 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNN 151 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCC
Confidence 99999999999955445555446666778999988543322 34456666654322 2333322 23455678
Q ss_pred CeEEccCCCCCcHHHHH
Q 022672 222 NAIVVPHIASASKWTRE 238 (294)
Q Consensus 222 nviiTPHia~~t~~~~~ 238 (294)
.+.+.|+-.. +.++.+
T Consensus 152 lvevv~~~~t-~~~~~~ 167 (287)
T PRK08293 152 TAEIMGHPGT-DPEVFD 167 (287)
T ss_pred eEEEeCCCCC-CHHHHH
Confidence 8888887543 334333
No 73
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.73 E-value=7.1e-08 Score=91.61 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=67.5
Q ss_pred CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..++|+||| +|.||+++|+.| +..|.+|.+||+... .+.++++++||+|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence 458999999 999999999998 678999999997421 246678899999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 192 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~ 192 (294)
|+|.. .+..++ ++... +++|+++++++..+..-..++.+
T Consensus 149 avP~~-~~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~ 187 (374)
T PRK11199 149 SVPIH-LTEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLA 187 (374)
T ss_pred eCcHH-HHHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHH
Confidence 99954 445555 44444 89999999997654333334433
No 74
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.73 E-value=1.7e-07 Score=84.60 Aligned_cols=103 Identities=30% Similarity=0.359 Sum_probs=72.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCC----EEEEE-cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
++|||||+|.||+++++.|. ..|. +|++| |++.... +.+. .. +.....+..+++++||+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~~--------~~-----g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVFQ--------SL-----GVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHHH--------Hc-----CCEEeCChHHHHhcCCEE
Confidence 47999999999999999984 5566 88888 7765432 2211 11 122346788889999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
++|+| ......++ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 99997 45555555 4555667889999988655 46666665553
No 75
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.72 E-value=5.3e-08 Score=92.32 Aligned_cols=103 Identities=18% Similarity=0.358 Sum_probs=74.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.++++.|+|+|.+|+.+++.+ +.+|++|.++|++.... +.....++..+ ........++.+.++++|+|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~g~~v------~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEFGGRI------HTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhcCcee------EeccCCHHHHHHHHccCCEEE
Confidence 36788999999999999999996 79999999999876432 22111111000 000111235778889999999
Q ss_pred EccCCC-ccccccccHHHHhcCCCCcEEEEcC
Q 022672 150 LHPVLD-KTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 150 l~~Plt-~~t~~li~~~~l~~mk~gailIN~a 180 (294)
.+++.+ ..+..+++++.++.||+++++||++
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 998642 3356688999999999999999986
No 76
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.70 E-value=6.5e-08 Score=88.56 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=66.5
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||+|+|||.| .||+.+|.+| ...|++|+.|+++. .++.++.++||
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~AD 204 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALL-LQAHCSVTVVHSRS----------------------------TDAKALCRQAD 204 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCC
Confidence 568999999999996 9999999998 57899999997542 26889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+++++.. +++.... +|+|+++||+|.-.
T Consensus 205 IVIsavg~~----~~v~~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 205 IVVAAVGRP----RLIDADW---LKPGAVVIDVGINR 234 (301)
T ss_pred EEEEecCCh----hcccHhh---ccCCcEEEEecccc
Confidence 999999843 4555554 79999999998544
No 77
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.69 E-value=6.5e-07 Score=82.08 Aligned_cols=128 Identities=22% Similarity=0.258 Sum_probs=79.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhh---hhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||.|.||..+|..|+ ..|.+|++||++.+... ...+..... ....+... .......+++ .+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLE-AGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 57999999999999999984 67999999999865432 111100000 00111100 0112345665 47
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~ 208 (294)
++||+|+.|+|...+.+..+-++....++++++|+ |+|.-. ..++.+.+.. .-+..++-.+.
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~ 144 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN 144 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence 89999999999765655555466777889999998 665543 3467666532 12233444444
No 78
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.67 E-value=4.1e-07 Score=79.07 Aligned_cols=110 Identities=20% Similarity=0.321 Sum_probs=79.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV 147 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi 147 (294)
.++.||+++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.+ + .... +.++++. +||+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~~v-~~~~l~~~~~Dv 88 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----ATVV-APEEIYSVDADV 88 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CEEE-cchhhccccCCE
Confidence 479999999999999999999998 68999999999876432 2221111 1 1111 3355554 7999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
++.|.. .++++++.++.|+. .+++.-+-+.+-| ..-.+.|++..+.
T Consensus 89 ~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 89 FAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred EEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 987765 46889999999974 4788888887766 4556667776654
No 79
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.66 E-value=4.5e-07 Score=82.41 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=66.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
++|+|||+|.||+++|+.|. ..| .+|++||++..... .. ...+.. ....+.+++. +||+|++|
T Consensus 1 m~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~-~~--------~~~g~~----~~~~~~~~~~-~aD~Vila 65 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLK-KA--------LELGLV----DEIVSFEELK-KCDVIFLA 65 (275)
T ss_pred CEEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHH-HH--------HHCCCC----cccCCHHHHh-cCCEEEEe
Confidence 37999999999999999984 445 58999998765421 11 111111 1124667765 59999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+|. ..+..++ .+... +++++++++++.- ...+.+.+.+
T Consensus 66 vp~-~~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 66 IPV-DAIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred CcH-HHHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 994 3444444 45556 8899999997542 3445555543
No 80
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.65 E-value=4.2e-07 Score=87.33 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=75.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh--------hhhhhcCCCCcc-ccccCCHHHHhhc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVT-WKRASSMDEVLRE 144 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~l~ell~~ 144 (294)
++|||||+|.||..+|..|+ ..|.+|++||++.... +.+..+.. +.+.... ..+ .....++++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~~--~~g~l~~~~~~~~~~~~ 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKAL--AAGRLRATTDYEDAIRD 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHhh--hcCCeEEECCHHHHHhh
Confidence 37999999999999999984 6899999999876543 21111000 0000000 001 2234578888999
Q ss_pred CCEEEEccCCCccc------cccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672 145 ADVISLHPVLDKTT------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL 194 (294)
Q Consensus 145 aDiV~l~~Plt~~t------~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL 194 (294)
||+|++|+|..... ..+. -......+++|.++|+.|.-.+-..+.+.+.+
T Consensus 77 advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 77 ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 99999999953321 1122 24556778999999999876666666676444
No 81
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.64 E-value=1.5e-07 Score=85.72 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.++|||||+|.||+++++.|. ..| .+|++||++.....+.+...+ +.....+..+++++||+|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~------------g~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY------------GVKGTHNKKELLTDANIL 69 (279)
T ss_pred CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc------------CceEeCCHHHHHhcCCEE
Confidence 468999999999999999984 444 678999987543333322111 122345778889999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
++++| ..+....+ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 70 ilav~-p~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 70 FLAMK-PKDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred EEEeC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 99999 34444444 4555667889999998654 35566666554
No 82
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.64 E-value=3.2e-07 Score=85.47 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=75.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||+|.||..+|.+|+ ..|.+|.+|+++.... +.+.... ..................++++.++.+|+|++++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 57999999999999999984 6799999999975432 2211100 0000000000001224468888899999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 196 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG-~~vd--~~aL~~aL~~ 196 (294)
|.. .+ ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 83 ~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 83 PSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred chH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 954 22 6677889999999999997 4332 4455565544
No 83
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.62 E-value=7e-07 Score=73.67 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=76.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.+++++|+|.|.||+.+++.|+ ..| .+|.++|++.... +.+.+.++. ... .....+.+++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~-~~~~~~~~~-------~~~-~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALA-ELGAAKIVIVNRTLEKA-KALAERFGE-------LGI-AIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh-------ccc-ceeecchhhccccCCEE
Confidence 466889999999999999999984 564 7899999876543 222221110 000 01235677888999999
Q ss_pred EEccCCCcc-cc-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672 149 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 199 (294)
Q Consensus 149 ~l~~Plt~~-t~-~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i 199 (294)
++++|.... .. ..+.. ..++++.+++|++..+... .|.+.+++..+
T Consensus 86 i~~~~~~~~~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 86 INTTPVGMKPGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred EeCcCCCCCCCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 999996543 11 22332 2368999999998765443 77777776543
No 84
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.61 E-value=2.3e-07 Score=84.39 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=77.1
Q ss_pred CCEEEEEcCChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..+|||||+|.||+.+++.|.+. .++++. +||+.+... +.+.+.+ +. .....+++++++++|+|++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVVE 73 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEEE
Confidence 47899999999999999998543 588876 678765432 2221111 10 1234689999999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
|+|.. ++.-+. .+.++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 74 ~tp~~--~h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 74 AAPAS--VLRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred CCCcH--HHHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 99942 332222 3345667667778899888889999988876543
No 85
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.60 E-value=1.9e-07 Score=78.01 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=65.4
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh-hhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
+|+|+|.|++|.++|..| ...|.+|..|.+..+.. +...+ ..+......-..+.......++++.++++|+|++++|
T Consensus 1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 689999999999999997 57889999999976432 22111 1000000000001122345789999999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
. ...+. +-++....++++..+|++..|=
T Consensus 79 s-~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 79 S-QAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-GGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 3 22233 3366667778899999998763
No 86
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.60 E-value=1.9e-07 Score=84.92 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=67.5
Q ss_pred CcccCCCEEEEEcCChH-HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||.|.+ |+.+|.+| ...|++|+.+..+ ..++.+.+++||
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLL-LQAGATVTICHSK----------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCC
Confidence 45799999999999998 99999998 6899999987532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+++++ +.++++. ..+|+|+++||+|.-.
T Consensus 204 IVV~avG----~~~~i~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 204 IVVAAVG----KRNVLTA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred EEEEcCC----CcCccCH---HHcCCCCEEEEccccc
Confidence 9999998 4668887 4579999999998654
No 87
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=6.6e-07 Score=81.60 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=75.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHH--HhhhhhhhhhcCCCCc--------cccccCCHHHHhh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR 143 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 143 (294)
++|+|||.|.||..+|..+ ...|.+|++||+++....... ....-+.+...+.... ......++++ ++
T Consensus 4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 5799999999999999998 467999999998875432100 0000000111111000 1122345654 78
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+||+|+.|+|...+.+.-+-++..+.++++++++...-| +....|.+.+..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 999999999966665555556666778999988544333 566678787743
No 88
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.59 E-value=3e-07 Score=77.73 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=67.9
Q ss_pred cccCCCEEEEEcCChH-HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 69 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 69 ~~l~gktvGIIGlG~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
.++.|+++.|||.|.+ |..+|+.| ...|++|+..+++. .++.+.++++|+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3699999999999996 88899998 67898998887642 257788999999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 186 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 186 (294)
|+.+++. + + ++.++. ++++.++||+|...-+|
T Consensus 91 VIsat~~-~--~-ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGK-P--G-LVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCC-C--c-eecHHH---ccCCeEEEEccCCCccc
Confidence 9999983 2 2 788875 57899999999888777
No 89
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.58 E-value=7.3e-08 Score=77.63 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=55.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
...+|||||.|++|..+++.| +..|.+|.++-.+.....++.... .+.....+++|+++++|+++++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a~~~------------~~~~~~~~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERAAAF------------IGAGAILDLEEILRDADLVFIA 75 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHHHC--------------TT-----TTGGGCC-SEEEE-
T ss_pred CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCcccccccccc------------cccccccccccccccCCEEEEE
Confidence 346899999999999999998 688999987643332222221110 1112335778899999999999
Q ss_pred cCCCccccccccHHHHhc--CCCCcEEEEcC
Q 022672 152 PVLDKTTYHLINKERLAT--MKKEAILVNCS 180 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~--mk~gailIN~a 180 (294)
+| ++...-+.+++-.. .++|.+++.+|
T Consensus 76 vp--DdaI~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 76 VP--DDAIAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp S---CCHHHHHHHHHHCC--S-TT-EEEES-
T ss_pred ec--hHHHHHHHHHHHHhccCCCCcEEEECC
Confidence 99 34444444555554 78999999995
No 90
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.57 E-value=2.5e-07 Score=83.63 Aligned_cols=95 Identities=22% Similarity=0.395 Sum_probs=76.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.||.+.|.|||.+|+..|+.| ++||.+|++....+-..+....++ ..+.+++|..++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG---------------~~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEG---------------YEVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhc---------------cEeeeHHHhhhcCCEEE
Confidence 57899999999999999999998 899999999765543333332222 13568999999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 184 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~ 184 (294)
.+.- .+.+|..+.|.+||+++++.|++.-.+
T Consensus 275 TtTG----c~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TTTG----CKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred EccC----CcchhhHHHHHhCcCCcEEeccccccc
Confidence 8764 578899999999999999999976554
No 91
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=1.5e-06 Score=79.61 Aligned_cols=130 Identities=17% Similarity=0.259 Sum_probs=83.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|||||.|.||..+|..++ ..|.+|+.||+.++.... ........ ....+... .......++ +.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~-~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLER-AVSRGKLTERERDAALARLRFTTDL-GDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHH-HHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence 48999999999999999874 679999999998765321 11111111 11112110 011234677 457
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 209 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~ 209 (294)
++||+|+-|+|.+.+.+..+-.+.-+.+ +++++|++.+.+-. ..++..+++. .-+..++..|.+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~P 147 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFNP 147 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCCC
Confidence 9999999999988888877766555555 89999988765544 4444455432 223445555553
No 92
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.57 E-value=7.1e-07 Score=85.17 Aligned_cols=138 Identities=16% Similarity=0.258 Sum_probs=87.1
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh--------hhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+|+|||+|.||..+|..++ .|.+|++||++.... +...++.. +.+... ........+..+.+++||
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~~---~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQSD---KIHFNATLDKNEAYRDAD 75 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHhC---CCcEEEecchhhhhcCCC
Confidence 6999999999999997763 489999999987543 22211100 000000 111222234677889999
Q ss_pred EEEEccCCCcccc-cccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC---
Q 022672 147 VISLHPVLDKTTY-HLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--- 214 (294)
Q Consensus 147 iV~l~~Plt~~t~-~li~--------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--- 214 (294)
+|++|+|..-+-+ +.++ ++... +++|.++|+.|+-.+=-.+.+.+.+.+..+ +|.+|.+..
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a 148 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKA 148 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcc
Confidence 9999999541211 1111 23344 799999999999998888888887765332 246776532
Q ss_pred -CCccCCCCeEE
Q 022672 215 -PGLSEMKNAIV 225 (294)
Q Consensus 215 -~~L~~~~nvii 225 (294)
+.+...|.|++
T Consensus 149 ~~d~~~p~rvv~ 160 (388)
T PRK15057 149 LYDNLHPSRIVI 160 (388)
T ss_pred cccccCCCEEEE
Confidence 24555556653
No 93
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.57 E-value=2.5e-07 Score=75.32 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=72.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
++.|+++.|||.|.+|+.++..| ...|++ |+.++|+.+.. +.+...+ +..........++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 68999999999999999999998 577886 99999986542 2322221 11222233456777889999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCc-EEEEcCCCcccC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVID 186 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~ga-ilIN~aRG~~vd 186 (294)
+.+.|.. ...+.++.++..++.. ++++.|...-|+
T Consensus 80 I~aT~~~---~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 80 INATPSG---MPIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp EE-SSTT---STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred EEecCCC---CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence 9999853 3377888887665543 888887654333
No 94
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.56 E-value=2.7e-07 Score=83.91 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=72.7
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
++|||||+|+||+++++.|. ..| .+|++||++.... +.+.+.+ + .....+..+++++||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDKY-------G-----ITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence 47999999999999999874 444 3799999876542 2221111 1 123457788899999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
+|+| ......++ ++....++++.++|++.=| ++.+.|.+.+.
T Consensus 69 Lavk-P~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 69 LSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred EEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 9999 34455544 4455557888999999777 55666666653
No 95
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.54 E-value=3.6e-07 Score=84.56 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=70.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||+|.||..+|..| ...|.+|.+|+++.... +.+.... ............+.....++++.++++|+|++|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 4799999999999999998 46799999999875432 2211100 0000000000011233467888899999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 185 (294)
|. ..+..++ .+....+++++++|+++.|--.
T Consensus 80 ~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 80 PS-QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 94 4555555 4555667889999999765433
No 96
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.53 E-value=1.5e-06 Score=85.64 Aligned_cols=131 Identities=22% Similarity=0.328 Sum_probs=87.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|||||+|.||+.+|..++ ..|++|+.||++....... ....+.. ....+... .......++++ +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAK-LVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 57999999999999999974 6799999999987643221 1111111 11112100 01233467766 5
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 211 (294)
.+||+|+.++|...+.+..+-.+.-+.++++++| +|+|.-++ .+|.+++.. .-+..++..|.+-|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence 6999999999988888877766666667899999 59977665 366666643 22346667776444
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.51 E-value=3.4e-06 Score=77.94 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=70.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh----hhhhhhhcCCC---CccccccCCHHHHhhcCC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ---PVTWKRASSMDEVLREAD 146 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~l~ell~~aD 146 (294)
++|+|||+|.||..+|..| ...|.+|++||++.... +..... .+. ....... ........++++.+++||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGAL-ERARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 5799999999999999998 46799999999876542 221110 000 0000000 000123457888899999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
+|++|+|...+...-+-.+.-..++++++++...-| +....+.+.+.
T Consensus 82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999999954433333324444456777777543333 34557777664
No 98
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.50 E-value=8.8e-07 Score=80.74 Aligned_cols=106 Identities=17% Similarity=0.273 Sum_probs=71.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+|+|||+|.||+++++.|. ..| .+|++|+++.......+...+ . ......+..++++++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~---------~--~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY---------P--TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc---------C--CeEEeCCHHHHHhhCCEEE
Confidence 47999999999999999974 445 689999886543222211110 0 0112357788899999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
+|+| ......++ ++....++++..+|.+.-| +..+.|.+.+.
T Consensus 70 lavp-p~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 70 ICVP-PLAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred EecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 9999 23333333 3444456788899998877 66677777663
No 99
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=1.1e-06 Score=77.21 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=90.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l 150 (294)
+++|.||+|+||..++++| ..-|.+|++||.++....+. ...+ .....+++|++ ....+|.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~g-----a~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEG-----ATGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence 4799999999999999998 68899999999987654321 1112 23346777664 56789999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~ 207 (294)
.+|..+-|..+| +++-..|.+|-++|+-+...--|.....+.|++..|. .+||=
T Consensus 66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 999876666666 6677889999999999998888888888999887765 46663
No 100
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.50 E-value=2.7e-06 Score=83.76 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=75.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh---hhhhhh---hcCCCCcc-ccccCCHHHHhhcCC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---YGQFLK---ANGEQPVT-WKRASSMDEVLREAD 146 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~---~~~~~~---~~~~~~~~-~~~~~~l~ell~~aD 146 (294)
++|||||+|.||..+|..|+ ..|.+|++||+++.... .+.+. ...... .......+ .....++++++++||
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAER-IIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 58999999999999999984 67999999999875432 11100 000000 00000001 234578989999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+|+.++|...+.+..+-++.-+.++++++| .++..++ ....|.+.+..
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 999999976655654444555667888755 4444443 35577776643
No 101
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.49 E-value=6.7e-06 Score=75.34 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=79.2
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHh---hhhhhhhhcCCCC--------ccccccCCHH
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVT---AYGQFLKANGEQP--------VTWKRASSMD 139 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~---~~~~~~~~~~~~~--------~~~~~~~~l~ 139 (294)
++|+|||.|.||..+|..+ ...|++|+.||++...... .... .... ....+... .......++
T Consensus 4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRN-LVEKGKMSEDEAKAIMARIRTSTSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHH-HHHcCCCCHHHHHHHHhCcEeeCCH-
Confidence 5899999999999999997 4779999999998754321 0000 0000 00011100 001122455
Q ss_pred HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672 140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208 (294)
Q Consensus 140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~ 208 (294)
+.+++||+|+.++|...+.+.-+-++.-+.++++++|++...| +....+.+.+.. .-+..++.-+.
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~ 146 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFN 146 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 5679999999999965544444445555678899999877666 455667777643 22334444443
No 102
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.49 E-value=6.9e-07 Score=91.92 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=88.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
++|+|||+|.||+++|+.| +..| .+|++||++..... .. ...+.. .....+++++++++|+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~-~a--------~~~g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLE-LA--------VSLGVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHH-HH--------HHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5666 58999998765421 11 111111 01235688889999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC----------CCCccCCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK 221 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~~~L~~~~ 221 (294)
+|. .....++ ++....++++.++++++..+..-.+.+.+.+.... ..+..+=|.. .+.|+.-.
T Consensus 71 vp~-~~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~ 143 (735)
T PRK14806 71 VPV-LAMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNH 143 (735)
T ss_pred CCH-HHHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence 994 2333333 34445678899999998755333445555543311 2223333421 12477778
Q ss_pred CeEEccCCCC
Q 022672 222 NAIVVPHIAS 231 (294)
Q Consensus 222 nviiTPHia~ 231 (294)
+++++|+...
T Consensus 144 ~~~~~~~~~~ 153 (735)
T PRK14806 144 KVILTPLAET 153 (735)
T ss_pred eEEEECCCCC
Confidence 8999997554
No 103
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.49 E-value=5.7e-07 Score=82.43 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=64.7
Q ss_pred CcccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||+|+||| .|.+|+.+|++| ..-|+.|++|+.+. .++++++++||
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~AD 203 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLL-LAANATVTIAHSRT----------------------------RDLPAVCRRAD 203 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCC
Confidence 4579999999999 999999999998 57799999995321 25788999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+++++... ++.... +|+|+++||+|--.
T Consensus 204 IVIsavg~~~----~v~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 204 ILVAAVGRPE----MVKGDW---IKPGATVIDVGINR 233 (296)
T ss_pred EEEEecCChh----hcchhe---ecCCCEEEEcCCcc
Confidence 9999998432 454443 89999999997544
No 104
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.48 E-value=4.3e-06 Score=77.33 Aligned_cols=119 Identities=21% Similarity=0.199 Sum_probs=71.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHH---HhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||+|.||.++|..| ...|.+|++||++........ ...... +...+..+ .......++++.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAAAAAPAYIAGRLED-LAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 4799999999999999998 467999999999864321100 000000 11111100 0012446888999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
++||+|+.++|...+.+..+-.+.-+..+++.++...+. ......+.+.+..
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~ 132 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAG 132 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCC
Confidence 999999999996544444333333334455555543333 3346667777644
No 105
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.46 E-value=1.2e-06 Score=86.29 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=87.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHH
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEV 141 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~el 141 (294)
=++|||||+|.||+.+|..++ ..|++|+.||++....... ....+.. ....+... .......++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~- 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA- 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence 357999999999999999984 7799999999987643211 0011111 11112110 01223467766
Q ss_pred hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672 142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 212 (294)
Q Consensus 142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 212 (294)
+++||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-++ ..+.+.+.. ..+..++.-|.+-|.
T Consensus 82 l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 82 LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 469999999999887877776666667788888876 7765443 467777643 445677777775553
No 106
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=8.2e-07 Score=80.81 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=65.3
Q ss_pred CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||+++|||. |.+|+.+|.+| ...|++|+.|... ..++++.+++||
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLL-LDKNATVTLTHSR----------------------------TRNLAEVARKAD 203 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCC
Confidence 56899999999999 99999999998 5789999998321 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+++++. .+++.... +|+|+++||+|--.
T Consensus 204 IVI~avg~----~~~v~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 204 ILVVAIGR----GHFVTKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred EEEEecCc----cccCCHHH---ccCCcEEEEeccee
Confidence 99999984 33455544 89999999997544
No 107
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.39 E-value=2.5e-07 Score=81.15 Aligned_cols=136 Identities=13% Similarity=0.183 Sum_probs=89.6
Q ss_pred CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHh-hcCCCEEEE-Ec
Q 022672 27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YD 104 (294)
Q Consensus 27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~-~~~g~~V~~-~d 104 (294)
...+.++|.+..++...|++.. |. ..++++|||+|.+|+.+++.+. ...|+++++ +|
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l~------------~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D 117 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKILG------------LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD 117 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHhC------------CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence 3455567888888777776531 11 2357999999999999998531 357898876 57
Q ss_pred CCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEEccCCCcc---ccccccHHHHhcCCCCcEEEEc
Q 022672 105 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~Plt~~---t~~li~~~~l~~mk~gailIN~ 179 (294)
..+... .. ......+....++++++++ .|.+++|+|.... ...+.......-|....+.+|+
T Consensus 118 ~d~~~~-~~------------~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v 184 (213)
T PRK05472 118 VDPEKI-GT------------KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSV 184 (213)
T ss_pred CChhhc-CC------------EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecC
Confidence 654321 00 0001112233568888865 9999999996554 1222223334556667888999
Q ss_pred CCCcccCHHHHHHHHHc
Q 022672 180 SRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 180 aRG~~vd~~aL~~aL~~ 196 (294)
.+|.+|+..+|..+|..
T Consensus 185 ~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 185 PEDVIVRNVDLTVELQT 201 (213)
T ss_pred CCCCEEEEechHHHHHH
Confidence 99999999999998864
No 108
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.7e-06 Score=78.90 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=66.5
Q ss_pred CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+..+.||++.|||.|. +|+.+|..| ...|++|+.++++. .++.+.+++||
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~AD 203 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLL-LQKNASVTILHSRS----------------------------KDMASYLKDAD 203 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCC
Confidence 3579999999999988 999999998 68899999886531 25788999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++- .+++.++. +|+|+++||+|--.
T Consensus 204 IVIsAvg~----p~~i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 204 VIVSAVGK----PGLVTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred EEEECCCC----CcccCHHH---cCCCcEEEEcCCCc
Confidence 99999983 44677764 68999999998643
No 109
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.34 E-value=3.7e-06 Score=71.84 Aligned_cols=144 Identities=20% Similarity=0.250 Sum_probs=83.0
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH--HHHhh-hhhhhhhcCCCC--------ccccccCCHHHHhh
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQP--------VTWKRASSMDEVLR 143 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~~--------~~~~~~~~l~ell~ 143 (294)
+|+|||.|.||+.+|..++ ..|++|..||++...... ..... ... ....+... .......+++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDR-LVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHH-HHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhh-hhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 6999999999999999874 679999999998764321 11111 111 11111111 1123457898888
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCe
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 223 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nv 223 (294)
+||+|+=++|..-+.+.-+-++.-+.++++++|...+ +-+....|.+.+.. .-+..++=.|. |....||.+ |
T Consensus 78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---v 149 (180)
T PF02737_consen 78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALSR-PERFIGMHFFN--PPHLMPLVE---V 149 (180)
T ss_dssp TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---E
T ss_pred hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccCc-CceEEEEeccc--ccccCceEE---E
Confidence 9999999999877777666677777889999887653 34556667666642 33445554443 332234444 4
Q ss_pred EEccCC
Q 022672 224 IVVPHI 229 (294)
Q Consensus 224 iiTPHi 229 (294)
+-.|+.
T Consensus 150 v~~~~T 155 (180)
T PF02737_consen 150 VPGPKT 155 (180)
T ss_dssp EE-TTS
T ss_pred eCCCCC
Confidence 555543
No 110
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.33 E-value=7.9e-06 Score=75.12 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccccccc
Q 022672 84 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 163 (294)
Q Consensus 84 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~ 163 (294)
-|+.+|++| ...|.+|++||++.....+...+ .+...+ .....+..+++++||+|++|+|..+.++.++
T Consensus 31 gGspMArnL-lkAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl- 99 (341)
T TIGR01724 31 GGSRMAIEF-AMAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA- 99 (341)
T ss_pred CHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-
Confidence 378999998 47899999999876432111000 011122 2345688999999999999999877777777
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 164 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 164 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
...+..+++|+++||+++ ++.+.+++.|+.
T Consensus 100 ~GLaa~L~~GaIVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 100 RTIIEHVPENAVICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred HHHHhcCCCCCEEEECCC---CCHHHHHHHHHH
Confidence 568899999999999966 556666666654
No 111
>PRK07680 late competence protein ComER; Validated
Probab=98.32 E-value=2.7e-06 Score=77.27 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=71.3
Q ss_pred EEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
+|||||+|.||+.+++.|. ..| .+|.+|+++.... +.+.+.+ . +.....+..+++.++|+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~---------~--g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY---------P--GIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc---------C--CeEEECCHHHHHHhCCEEEE
Confidence 6999999999999999874 455 3789999976442 2211110 0 12234578888999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
++| ......++ ++....++++.++|+++-| +..+.|.+.+.
T Consensus 69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 998 33344444 4455567888999999854 36666766554
No 112
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=3.4e-06 Score=75.94 Aligned_cols=104 Identities=16% Similarity=0.267 Sum_probs=70.1
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC---EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
+|||||+|+||+++++.|. ..|. .+.+|+++.... +.+...+ + +.....+.+++++++|+|+++
T Consensus 2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence 7999999999999999974 4453 357888865432 2221111 0 122346788899999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 197 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 197 (294)
+| ......++. + + .++++.++|.++ .-+..+.|.+.+..+
T Consensus 69 v~-p~~~~~vl~-~-l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 69 VR-PQIAEEVLR-A-L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred eC-HHHHHHHHH-H-h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 99 344444442 2 2 257889999986 447788888777553
No 113
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.30 E-value=3.4e-06 Score=73.08 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=66.0
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++++|+|.|+||..+|+++ ...|.+|++-+++.++..+...+... .. ....+.++..+.+|+|++++|
T Consensus 2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l~--------~~---i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAALG--------PL---ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhhc--------cc---cccCChHHHHhcCCEEEEecc
Confidence 5899999999999999998 47899998886666554433222111 00 123578899999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
.. .....+ ++....+. |.++|++.-.
T Consensus 70 ~~-a~~~v~-~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FE-AIPDVL-AELRDALG-GKIVIDATNP 95 (211)
T ss_pred HH-HHHhHH-HHHHHHhC-CeEEEecCCC
Confidence 53 333332 55555565 8899998654
No 114
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.27 E-value=7.3e-06 Score=72.92 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=66.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcC--CCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..++|||||.|.||+++++.+++.. ..+ ++.++++.....+.+...+ +.....+++++++++|+|
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiV 70 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEE
Confidence 3568999999999999999874332 244 7778765333233222111 112345788999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
++++|. ...+.++ ++.-..++ +.++|+++-| ++.+.|.+.+..
T Consensus 71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 999993 2222222 33222334 5689998766 455566666644
No 115
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.25 E-value=4.2e-06 Score=81.39 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEccCCCccccc
Q 022672 84 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 160 (294)
Q Consensus 84 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~~Plt~~t~~ 160 (294)
||+.+|++| ...|.+|.+||+++... +.+... .+. ..+.....+++++++. +|+|++++|..+.+..
T Consensus 1 MG~~mA~nL-~~~G~~V~v~nrt~~~~-~~l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNI-ASHGYTVAVYNRTPEKT-DEFLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 699999998 47899999999987653 222210 010 1123456789998875 8999999998888888
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672 161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 211 (294)
Q Consensus 161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 211 (294)
++ .+.+..|.+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 88 568899999999999999999999999999998887766555666554
No 116
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.22 E-value=5.4e-06 Score=75.16 Aligned_cols=107 Identities=20% Similarity=0.346 Sum_probs=69.0
Q ss_pred CEEEEEcCChHHHHHHHHHhhc-CCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEG-FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~-~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+|||||+|.||+.+++.+.+. .++++ .++|++.... +.+.+. .+.....++++++.++|+|+.|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~------------~~~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASK------------TGAKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHh------------cCCeeECCHHHHhcCCCEEEEc
Confidence 4799999999999999987433 36774 4688876432 222111 1122346899999999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 198 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~---~aL~~aL~~g~ 198 (294)
.| ++... +-....++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 69 a~--~~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 69 AS--VNAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred CC--hHHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 87 33222 222233455666666777887764 35666666654
No 117
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.22 E-value=3.9e-05 Score=74.99 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=92.3
Q ss_pred CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhc
Q 022672 74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE 144 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~ 144 (294)
++|+|||+|.+|..+|-.|++ +.|.+|+++|...... +....+ ..+.+.. .. .-......++++.+++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence 579999999999999998863 4579999999876542 221111 0000010 00 0012234567788999
Q ss_pred CCEEEEccCCCcccc------------ccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee-CCCC
Q 022672 145 ADVISLHPVLDKTTY------------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFED 209 (294)
Q Consensus 145 aDiV~l~~Plt~~t~------------~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD-V~~~ 209 (294)
||++++|+| ||... .+. -++.-+.++++.++|.-|.-.+=-.+.+...|.+.. .|.-.. ++.+
T Consensus 79 advi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~P 156 (473)
T PLN02353 79 ADIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNP 156 (473)
T ss_pred CCEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECC
Confidence 999999997 44321 111 234557789999999999887777778887776521 121111 3667
Q ss_pred CCCCC----CCccCCCCeEE
Q 022672 210 EPYMK----PGLSEMKNAIV 225 (294)
Q Consensus 210 EP~~~----~~L~~~~nvii 225 (294)
|=+.. +.+...|+|++
T Consensus 157 Erl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred CccCCCCcccccCCCCEEEE
Confidence 76532 35777788874
No 118
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.20 E-value=4.4e-05 Score=67.63 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=101.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC---EEEEEcCCc----hhH--HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 139 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 139 (294)
..+.++++.|+|.|.+|+.+|+.| ...|+ +++.+|++. ... .......+.+ .....+ . ..++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~--~--~~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEK--T--GGTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCc--c--cCCHH
Confidence 358899999999999999999987 46787 499999983 211 1111111111 111011 1 13687
Q ss_pred HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeCCCCCCCCCCCcc
Q 022672 140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS 218 (294)
Q Consensus 140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~ 218 (294)
+.++++|+|+.+.| .++++.+.++.|+++.++...+.- ..|.-+.++.+.|- +..-+. +. -..
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~----~~~ 156 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD----FPN 156 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC----Ccc
Confidence 88899999999986 577889999999999999888833 34444444444433 222221 11 235
Q ss_pred CCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 022672 219 EMKNAIVVPHIASA-----SKWTREGMATLAALNVLGKIK 253 (294)
Q Consensus 219 ~~~nviiTPHia~~-----t~~~~~~~~~~~~~nl~~~~~ 253 (294)
+..|+++-|=++-. .....+.|...+++-+..+..
T Consensus 157 Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 157 QVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred ccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 78999999987631 112235566666666666543
No 119
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.19 E-value=8.4e-06 Score=68.77 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=69.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-c------------ccccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-V------------TWKRA 135 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~ 135 (294)
..+...+|.|+|.|..|+..++.+ +++|++|..+|.+..... .........+....... . .....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLR-QLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHH-HHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHH-hhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 357789999999999999999986 799999999998764321 11111111110000000 0 01122
Q ss_pred CCHHHHhhcCCEEEEccC-CCccccccccHHHHhcCCCCcEEEEcC
Q 022672 136 SSMDEVLREADVISLHPV-LDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 136 ~~l~ell~~aDiV~l~~P-lt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
..|.+.++.+|+|+.++- -....-.++.++.++.||++++++++|
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 357888999999986443 355677899999999999999999995
No 120
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.17 E-value=4.7e-06 Score=71.54 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=79.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
++|+|+|+|.+|..+|..|+ ..|.+|++||...... +...++. .+.+.... ..-......+.++.+++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 58999999999999999984 7899999999886532 2221110 00000000 001123346788889999
Q ss_pred CEEEEccCCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHcCCcceEEee-CCCCCCCCC-
Q 022672 146 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFEDEPYMK- 214 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRG~~vd~~aL~-~aL~~g~i~ga~lD-V~~~EP~~~- 214 (294)
|++++|+|...+..+..| +...+.++++.++|.-|+-.+=-.+.+. ..|++....+.-++ +|.+|=+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 999999993332222222 3556778999999999998887777544 44443222111111 366675532
Q ss_pred ---CCccCCCCeEE
Q 022672 215 ---PGLSEMKNAIV 225 (294)
Q Consensus 215 ---~~L~~~~nvii 225 (294)
..+.+.|+|++
T Consensus 158 ~a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 158 RAIEDFRNPPRVVG 171 (185)
T ss_dssp SHHHHHHSSSEEEE
T ss_pred CcchhccCCCEEEE
Confidence 24677788873
No 121
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.17 E-value=8.5e-06 Score=75.26 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=73.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|+|||.|..|.++|+.|+ .-|.+|..|.+++....+-.....+.........+.......+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 57999999999999999984 66788888887764332211111111111111222334456789999999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a 189 (294)
+...+.++ ++.-..+++++.+|+++.|=-.+.-.
T Consensus 81 -s~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~ 114 (329)
T COG0240 81 -SQALREVL-RQLKPLLLKDAIIVSATKGLEPETGR 114 (329)
T ss_pred -hHHHHHHH-HHHhhhccCCCeEEEEeccccCCCcc
Confidence 23333333 33335678999999999875554433
No 122
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=8.6e-06 Score=73.49 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=65.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC---CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
++|+|||+|.||+.+++.| ...| .+|.+|+++.... +.+.+.+ +.....+.++++.++|+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~------------g~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEY------------GVRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhc------------CCeecCChHHHHhcCCEEEE
Confidence 5799999999999999987 4556 6899999976442 2221111 11223577888899999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
|+|. .....++ ++....+ +.++|++.-|- ..+.+.+.+.
T Consensus 69 ~v~~-~~~~~v~-~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKP-QVMEEVL-SELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCH-HHHHHHH-HHHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 9982 2333333 2232223 46788776653 5566666554
No 123
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.15 E-value=2.4e-05 Score=70.72 Aligned_cols=100 Identities=24% Similarity=0.355 Sum_probs=72.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
++|||||+|+||++++.-| ..-| -+|++.+|+..... .+.+.|+ .....+.+++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g------------~~~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYG------------VVTTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcC------------CcccCcHHHHHhhCCEEE
Confidence 5799999999999999987 4555 58999999876543 2222221 112467788999999999
Q ss_pred EccCCCccccccccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 022672 150 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk---~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
+++. |+.. .+.++.++ ++.++|.++=| |..+.|.+.+.
T Consensus 68 LavK--Pq~~----~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 68 LAVK--PQDL----EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred EEeC--hHhH----HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 9997 5433 56666666 68999999776 56667777765
No 124
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.15 E-value=1.2e-05 Score=67.36 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=56.5
Q ss_pred cccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 69 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 69 ~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
.++.||++.|||-+. +|+.++.+| ...|+.|..++.+. .++++.+++||+
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI 82 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI 82 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence 479999999999985 999999998 67899998875431 468899999999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 184 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~ 184 (294)
|+.++. ..++|..+ .+|+|+++||++.-..
T Consensus 83 VVsa~G----~~~~i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 83 VVSAVG----KPNLIKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp EEE-SS----STT-B-GG---GS-TTEEEEE--CEEE
T ss_pred Eeeeec----cccccccc---cccCCcEEEecCCccc
Confidence 999997 35566655 4689999999976543
No 125
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.14 E-value=1e-05 Score=78.04 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=70.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|++++|+|.|.||+.+++.| ...| .+|++++++.... ..+...+ +.. .....++.+.+.++|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence 47899999999999999999998 5788 6899999976532 2222111 111 11224677888999999
Q ss_pred EEccCCCccccccccHHHHhcCC----CCcEEEEcCCCcccC
Q 022672 149 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID 186 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk----~gailIN~aRG~~vd 186 (294)
+.|++ .+..+++++.++.+. ...++||.+...=||
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 99975 456678888876652 235788887543333
No 126
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=1.9e-05 Score=72.00 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=64.5
Q ss_pred CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-|. +|+.+|.+| ...|+.|+.++.+. .++++.+++||
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~AD 204 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNAD 204 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCC
Confidence 4579999999999999 999999998 67899999886421 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
+|+.+++- .+++.. ..+|+|+++||+|--
T Consensus 205 Ivi~avG~----p~~v~~---~~vk~gavVIDvGin 233 (285)
T PRK10792 205 LLVVAVGK----PGFIPG---EWIKPGAIVIDVGIN 233 (285)
T ss_pred EEEEcCCC----cccccH---HHcCCCcEEEEcccc
Confidence 99999962 235666 446899999999843
No 127
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=1.3e-05 Score=73.01 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=66.0
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-| .+|+.+|.+| ...|+.|+.++.+. .++.+.+++||
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~AD 202 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLM-LNAGASVSVCHILT----------------------------KDLSFYTQNAD 202 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCC
Confidence 458999999999999 9999999997 57899998875321 25778899999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++ ..+++..+++ |+|+++||++--.
T Consensus 203 IvV~AvG----~p~~i~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 203 IVCVGVG----KPDLIKASMV---KKGAVVVDIGINR 232 (285)
T ss_pred EEEEecC----CCCcCCHHHc---CCCcEEEEeeccc
Confidence 9999997 3557777765 8999999998644
No 128
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.12 E-value=2.6e-05 Score=58.33 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=52.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.+++++|+|.|.+|+.+++.| ... +.+|..||+ |++
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di~ 58 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DIL 58 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CEE
Confidence 58899999999999999999998 455 567776641 999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+.+.+- .+.+.++..+.+++++++++++
T Consensus 59 i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 59 VTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 999873 4455566678899999999874
No 129
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=1.2e-05 Score=72.97 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=66.7
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.|+++.|+|.+ ..|+.+|.+| ...|++|..+..+. .++.+.+++||
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~AD 197 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALL-LNADATVTICHSKT----------------------------ENLKAELRQAD 197 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCC
Confidence 458999999999999 9999999987 68999998876421 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++- .+++.++++ |||+++||+|-..
T Consensus 198 IvI~Avgk----~~lv~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 198 ILVSAAGK----AGFITPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred EEEECCCc----ccccCHHHc---CCCcEEEEeeccc
Confidence 99999972 277888874 9999999998543
No 130
>PLN00203 glutamyl-tRNA reductase
Probab=98.10 E-value=1.5e-05 Score=78.66 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=70.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
++.+++|+|||.|.||+.+++.| ...|+ +|++++++.... ..+...+ +.....+....++.+.+.++|+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence 48899999999999999999997 57887 699999886542 2222211 11111122335677889999999
Q ss_pred EEccCCCccccccccHHHHhcCCCC-------cEEEEcCCC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRG 182 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~g-------ailIN~aRG 182 (294)
+.+.| ....++.++.++.++++ -+|||.|-.
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 99875 45667888888877432 377877644
No 131
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.09 E-value=1.8e-05 Score=73.30 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=62.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
+.|++|+|||.|.||+.+++.| +..| .+|++++++.... ..+...+ +. ......++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GG---NAVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence 6899999999999999999997 4555 5788999876532 2222211 11 1111235678889999999
Q ss_pred EccCCCccccccccHHHHhcC-CCCcEEEEcCC
Q 022672 150 LHPVLDKTTYHLINKERLATM-KKEAILVNCSR 181 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~m-k~gailIN~aR 181 (294)
.++|. ++...++ +..++.. +++.++||.+.
T Consensus 244 ~at~~-~~~~~~~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 244 SATGA-PHYAKIV-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ECCCC-CchHHHH-HHHHhhCCCCCeEEEEeCC
Confidence 99984 3332222 3333322 35677777764
No 132
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=1.9e-05 Score=72.14 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=64.6
Q ss_pred CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||.|. +|+++|..| ...|++|+.+++.. .++.+.++++|
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD 204 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD 204 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence 4579999999999998 999999987 57888999887521 25777889999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++ .+. +++.+. +|+|++++|++-..
T Consensus 205 IvI~AtG-~~~---~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 205 IIVGAVG-KPE---LIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred EEEEccC-CCC---cCCHHH---cCCCCEEEEEEEee
Confidence 9999996 232 676654 68999999997543
No 133
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.08 E-value=1.5e-05 Score=78.23 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=71.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh-----hhcCCCCccccccCC-------
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS------- 137 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------- 137 (294)
.+.+.++.|+|+|.+|...++.+ +.+|++|+++|++.... +.. ..++... ...+....++....+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-HHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 45678999999999999999985 79999999999887532 221 1111110 000000011111111
Q ss_pred ---HHHHhhcCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 138 ---MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 138 ---l~ell~~aDiV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+.+.++++|+|+.++ |. ...-.++.++.++.||+|+++||+|-
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG-~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPG-KPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCC-CCCCeeehHHHHhhCCCCCEEEEeee
Confidence 456678999998877 32 22346889999999999999999964
No 134
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.07 E-value=2.1e-05 Score=72.20 Aligned_cols=120 Identities=13% Similarity=0.221 Sum_probs=72.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||.|.||..+|..|+ ..|.+|+.|++ .. ..+...+ .+-.+... +..........+.++....+|+|++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 36999999999999999985 56899999998 32 2222211 01000000 000001112345667778999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
|. .++...+ ++....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 93 3444433 4444556778888877665 44466677776554443
No 135
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.07 E-value=5.3e-05 Score=62.09 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=64.8
Q ss_pred CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|+|- ..+|+.+|.+| ...|++|..++.+. .++++.+++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 35799999999999 56899999997 57899998876421 36888999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++.. ++|+.+. +|||+++|+++...
T Consensus 74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 999999742 6677765 68999999997654
No 136
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.07 E-value=2.1e-05 Score=74.42 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhhc------CCCEEEEEcCCchh----HHHHHHh-hhhhhhhhcCCCCccccccCCHHHH
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT----RLEKFVT-AYGQFLKANGEQPVTWKRASSMDEV 141 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~------~g~~V~~~d~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~el 141 (294)
-++|+|||.|..|.++|..|+.. |+.+|..|.++... ..+...+ ..+......-..+.......+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 35899999999999999998643 35788888766531 1111100 0000000001112223345788999
Q ss_pred hhcCCEEEEccCCCccccccccHHHHh--cCCCCcEEEEcCCCcccCH
Q 022672 142 LREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVIDE 187 (294)
Q Consensus 142 l~~aDiV~l~~Plt~~t~~li~~~~l~--~mk~gailIN~aRG~~vd~ 187 (294)
++.+|+|++++| ....+.++ ++.-. .+++++++|+++-|=-.+.
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence 999999999999 22233332 33333 4666789999988754443
No 137
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.06 E-value=1.4e-05 Score=72.21 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..+|||||+|.||+++++.|. ..+ -++++++++.... +.....+..+++.+||+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~-~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIE-NSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CCEEEEECccHHHHHHHHHHH-hCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence 468999999999999999974 333 2588888764321 012235677888999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 194 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL 194 (294)
++|+| ...+..++ .+....++++ .+|.+.-| +..+.+.+.+
T Consensus 62 ilavk-p~~~~~vl-~~i~~~l~~~-~iIS~~aG--i~~~~l~~~~ 102 (260)
T PTZ00431 62 VLAVK-PDLAGKVL-LEIKPYLGSK-LLISICGG--LNLKTLEEMV 102 (260)
T ss_pred EEEeC-HHHHHHHH-HHHHhhccCC-EEEEEeCC--ccHHHHHHHc
Confidence 99998 34444444 3343445554 45555444 3455555554
No 138
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.05 E-value=2.3e-05 Score=73.01 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=64.7
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh--hhhhhhhhcC----CCCccccccCCHHHHhhcCCEEE
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--AYGQFLKANG----EQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
|||+|||.||+.+++.+.+.-++++++...........+.. +|........ ....+.....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999986445688988754322221111111 1110000000 00011222457999999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
.|.| .+.+..+++.+..|+++++|+-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECC
Confidence 9865 67889999999999999999865
No 139
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.05 E-value=2.8e-05 Score=72.63 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=72.8
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-----ccccccCCHHHHhhcCCEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----VTWKRASSMDEVLREADVI 148 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~ell~~aDiV 148 (294)
++|+|||.|.||..+|..| ...|.+|.+||+... .+.+.. .+.......... .......+. +.++.+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~--~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARI--GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHH--HHHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 4799999999999999998 467999999998542 122111 010000000000 001112344 567899999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 199 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i 199 (294)
++++|. ++....+ ++....++++.++|.+.-| +...+.+.+.+...++
T Consensus 78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 999984 4445444 4566677889999988654 4445667776655444
No 140
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.2e-05 Score=71.48 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=64.3
Q ss_pred CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-|. +|+.+|..| ...|+.|+.++... .++.+..++||
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~AD 209 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAML-LNRNATVSVCHVFT----------------------------DDLKKYTLDAD 209 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHH-HHCCCEEEEEeccC----------------------------CCHHHHHhhCC
Confidence 4579999999999999 999999998 67899998876321 36888999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+|+.++.- .+++..+ .+|+|+++||+|-
T Consensus 210 Ivv~AvG~----p~~i~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 210 ILVVATGV----KHLIKAD---MVKEGAVIFDVGI 237 (287)
T ss_pred EEEEccCC----ccccCHH---HcCCCcEEEEecc
Confidence 99998862 3467666 4689999999975
No 141
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.03 E-value=3.1e-05 Score=72.29 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
-+++||||.|.+|+..++.+...+. -+|.+||++.... +.+.+.. .. ....+....+.++++++||+|+.|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~----~~---~g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRA----SD---YEVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----Hh---hCCcEEEeCCHHHHhccCCEEEEe
Confidence 4789999999999997776643343 5789999987653 3332221 11 111233457899999999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+|. ..-++..+ .+|||+.+..++-
T Consensus 200 T~s---~~P~~~~~---~l~~g~~v~~vGs 223 (325)
T TIGR02371 200 TPS---RKPVVKAD---WVSEGTHINAIGA 223 (325)
T ss_pred cCC---CCcEecHH---HcCCCCEEEecCC
Confidence 873 35666554 4599999999974
No 142
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.03 E-value=2e-05 Score=73.94 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=67.4
Q ss_pred EEEEEcCChHHHHHHHHHhh-c------CCCEEEEEcCCc---hhHHHHHHhhh--hhhhhhcCCCCccccccCCHHHHh
Q 022672 75 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAY--GQFLKANGEQPVTWKRASSMDEVL 142 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~-~------~g~~V~~~d~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ell 142 (294)
+|+|||.|..|.++|..|+. + |+.+|..|.+.. ........... +......-..+.......++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 48999999999999998853 2 448999998732 11111111100 000000000111223446899999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 186 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 186 (294)
++||+|++++| +...+.+ -++.-..++++..+|+++.|=-.+
T Consensus 81 ~~ADiIIlAVP-s~~i~~v-l~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGI-CKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECC-hHHHHHH-HHHHHhhcCCCCEEEEEeCCcccC
Confidence 99999999999 2333333 355556678899999999884433
No 143
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.0001 Score=69.40 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=95.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hh---hhhhcCCCCccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQ---FLKANGEQPVTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~l~ell 142 (294)
.+|||||+|-||-.+|-.++ ..|.+|+++|.+..... ..-.+- .. .....+ ..+...+.++ +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd-~ln~G~~~i~e~~~~~~v~~~v~~g----~lraTtd~~~-l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVD-KLNRGESYIEEPDLDEVVKEAVESG----KLRATTDPEE-L 82 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHH-HHhCCcceeecCcHHHHHHHHHhcC----CceEecChhh-c
Confidence 78999999999999999874 78999999998865422 111000 00 000001 0122334444 4
Q ss_pred hcCCEEEEccCCCccccc-c------cc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeC---CCC
Q 022672 143 READVISLHPVLDKTTYH-L------IN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDV---FED 209 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~-l------i~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g-~i~ga~lDV---~~~ 209 (294)
+.||++++|+| ||-+.. - .+ +.....||+|.++|==|+-..=.++.++..|.+. .-....-|. |.+
T Consensus 83 ~~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 83 KECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ccCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 59999999999 665442 1 11 3455789999999988888888888888777553 111122343 566
Q ss_pred CCC-CCC---CccCCCCeEEccCCCCCcHHHHH
Q 022672 210 EPY-MKP---GLSEMKNAIVVPHIASASKWTRE 238 (294)
Q Consensus 210 EP~-~~~---~L~~~~nviiTPHia~~t~~~~~ 238 (294)
|-. |.+ .+.+.|+|| ||.|..+.+
T Consensus 162 ERv~PG~~~~el~~~~kVI-----gG~tp~~~e 189 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVI-----GGVTPKCAE 189 (436)
T ss_pred cccCCCchhhhhhcCCcee-----ecCCHHHHH
Confidence 643 333 466677776 777765443
No 144
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.00 E-value=1.4e-05 Score=72.82 Aligned_cols=102 Identities=20% Similarity=0.342 Sum_probs=74.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+...+|.|||.|-+|..-||. +.++|.+|...|.+.+. +....+.|+..+ .........+++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~r-l~~ldd~f~~rv------~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNIDR-LRQLDDLFGGRV------HTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHHH-HhhhhHhhCcee------EEEEcCHHHHHHHhhhccEEE
Confidence 4566789999999999999998 57999999999987643 222222222111 111223356889999999996
Q ss_pred Ec--cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 150 LH--PVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 150 l~--~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
-+ +| ....-.++.++++++||||+++|+++
T Consensus 237 gaVLIp-gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEec-CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 44 45 35567788899999999999999994
No 145
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.99 E-value=4.9e-05 Score=70.59 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=67.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..++++|||.|.+|+.+++.+...++ .+|.+|++++.. .+.+.+.+ ...+ .......++++.+++||+|+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQG---FDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEEE
Confidence 46899999999999999986543345 579999998654 33333322 1111 112335788999999999988
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 191 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~ 191 (294)
+.|.+ ..++..+ .++||+ +||+.-........+-
T Consensus 196 aT~s~---~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~ 229 (314)
T PRK06141 196 ATLST---EPLVRGE---WLKPGT-HLDLVGNFTPDMRECD 229 (314)
T ss_pred eeCCC---CCEecHH---HcCCCC-EEEeeCCCCcccccCC
Confidence 77732 5566553 468998 4554333333333333
No 146
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.99 E-value=4.3e-05 Score=67.16 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=63.2
Q ss_pred CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+||| .|.||+.+|+.| ...|.+|++++++.+.. +.+...+...+...+ ..... ...+..+.++++|+|++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g-~~~~~-~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGG-SDIKV-TGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccC-CCceE-EEeChHHHHhcCCEEEEEC
Confidence 4799997 999999999998 46789999998876542 222111100000000 00001 1235678899999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 185 (294)
|. .....++ ++.-..++ +.++|++.-|--.
T Consensus 77 p~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PW-DHVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred CH-HHHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 93 3333333 23223344 5899999777433
No 147
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.98 E-value=3.3e-05 Score=74.62 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=66.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|++|+|+|.|.||+.+++.| ...|+ +|++++++.... ..+...+ +. ......++.+.+.++|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GG---EAIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CC---cEeeHHHHHHHhccCCEE
Confidence 37899999999999999999997 57897 799999876442 2222211 11 111224566778999999
Q ss_pred EEccCCCccccccccHHHHhcC-----CCCcEEEEcCC
Q 022672 149 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR 181 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~m-----k~gailIN~aR 181 (294)
+.|+|. ...++..+.++.+ +.+.++||.+-
T Consensus 247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 999863 3455677766543 24567777764
No 148
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.97 E-value=7.2e-05 Score=68.45 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=72.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|+|||.|.||..+|..|+ ..|.+|..++++.+. .+..... +..+ ..+..........+.+++ +.+|+|++++|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~-~~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRL-EDGEITVPVLAADDPAEL-GPQDLVILAVK 75 (304)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCcc-cCCceeecccCCCChhHc-CCCCEEEEecc
Confidence 36999999999999999984 678999999986433 2221110 1001 011100001123456665 89999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 201 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g 201 (294)
. .++..++ +.....+.+++.+|....| +-.++.+.+.+....+.+
T Consensus 76 ~-~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 76 A-YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred c-ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 3 3444433 4444556777888888776 333555666665545443
No 149
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=7.2e-05 Score=68.17 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=65.9
Q ss_pred CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||- ..+|+.+|.+| ..-++.|+.++.+. .++++.+++||
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL-~~~~atVt~chs~t----------------------------~~l~~~~~~AD 203 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLL-LNENATVTYCHSKT----------------------------KNLAELTKQAD 203 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCC
Confidence 46799999999999 46899999998 57789998875321 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.++. ..++++.+++ |+|+++||++.-.
T Consensus 204 IvI~AvG----~p~~i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 204 ILIVAVG----KPKLITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred EEEEecC----CCCcCCHHHc---CCCCEEEEeeccc
Confidence 9999997 3457888776 8999999998655
No 150
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.90 E-value=3.2e-05 Score=70.30 Aligned_cols=91 Identities=25% Similarity=0.288 Sum_probs=65.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
-|.||||+|||||.-|++=|..| +-.|.+|++=-+......+... ..++ .+.+.+|+.+++|+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~kA~-------------~dGf-~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKKAK-------------EDGF-KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHHHH-------------hcCC-EeecHHHHhhcCCEEE
Confidence 59999999999999999999998 7899997754333322221111 1122 2468999999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEE
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAIL 176 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gail 176 (294)
+.+|. .....++.++.-..||.|+.|
T Consensus 80 ~L~PD-e~q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 80 ILLPD-EQQKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred EeCch-hhHHHHHHHHhhhhhcCCceE
Confidence 99994 334455556777788888755
No 151
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.88 E-value=4.4e-05 Score=71.63 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=64.7
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh-hhhhhhh-cCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKA-NGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
++|+|||.|.+|..+|..|+ ..| +++.|.+++.. .+...+. ....... ....+.......++++.++.+|+|+++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 57999999999999999985 556 57777765433 2211110 0000000 000011122346788889999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+| ...++..+ ++....+++++.+|++..|=
T Consensus 85 vp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 85 VP-SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred eC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 99 33444443 44445678888899998864
No 152
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.88 E-value=0.00012 Score=63.01 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=65.0
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc------cCCHHH
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------ASSMDE 140 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~e 140 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+|.+.--.. ..+.. ..... ..++.+
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~~------------~~~~~-~~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQVF------------TRGES-IRHEKHHVTDEEAMTLD 122 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCccccc------------ccccc-cccccccccchhhHHHH
Confidence 568999999999996 5799999988 578999999874321100 00000 00000 112789
Q ss_pred HhhcCCEEEEccCCCcccccc-ccHHHHhcCCCCcEEEEcCC
Q 022672 141 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 181 (294)
Q Consensus 141 ll~~aDiV~l~~Plt~~t~~l-i~~~~l~~mk~gailIN~aR 181 (294)
.+++||+|+.+++- .++ +..+. .|+|+++||+|-
T Consensus 123 ~~~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 123 CLSQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred HhhhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 99999999999982 445 67665 479999999973
No 153
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00016 Score=66.72 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=90.0
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~ 152 (294)
++|||||+|++|+-+|+.| ...|..++.+||..-.... ..| +....+.+.+++ +.+|+|++|+
T Consensus 53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa---~~y------------g~~~ft~lhdlcerhpDvvLlct 116 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAA---EKY------------GSAKFTLLHDLCERHPDVVLLCT 116 (480)
T ss_pred eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHH---HHh------------cccccccHHHHHhcCCCEEEEEe
Confidence 4799999999999999998 6889999999987533211 111 122346677776 6799999998
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC--C---CCCccCCCCeEEcc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M---KPGLSEMKNAIVVP 227 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~---~~~L~~~~nviiTP 227 (294)
.- ..+..++..--++++|.|++|+++-.-....-.++.+-|-+. .|....-|. | ++....+|=|++--
T Consensus 117 si-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkv 189 (480)
T KOG2380|consen 117 SI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKV 189 (480)
T ss_pred hh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEe
Confidence 62 334444433345678999999999888777777777777442 244444454 2 23455577666655
Q ss_pred CCC
Q 022672 228 HIA 230 (294)
Q Consensus 228 Hia 230 (294)
.++
T Consensus 190 Rig 192 (480)
T KOG2380|consen 190 RIG 192 (480)
T ss_pred ecc
Confidence 554
No 154
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=7.3e-05 Score=67.98 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=64.8
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+..+ ..++.+..++||
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~AD 202 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALL-LNANATVDICHIF----------------------------TKDLKAHTKKAD 202 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCC
Confidence 468999999999998 8999999998 5678999876432 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.++. ..+++..++ .|+|+++||++--.
T Consensus 203 IvV~AvG----kp~~i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 203 IVIVGVG----KPNLITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred EEEEecC----cccccCHHH---cCCCcEEEEeeccc
Confidence 9999997 355677766 47999999998433
No 155
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=0.0001 Score=68.11 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=68.0
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
...++++|||.|.+|+..++.+...++. +|.+|+++..+ .+.+.+.+ ... ..... ..+++++++++|+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~---~~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RAL---GPTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----Hhc---CCeeE-ECCHHHHhhcCCEEE
Confidence 4568999999999999999987444664 69999998654 33343322 111 11111 468999999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
.|.|. ...++.. .+|||+.++.++.-
T Consensus 194 taT~s---~~Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 194 TATTS---RTPVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred EccCC---CCceeCc----cCCCCCEEEecCCC
Confidence 99984 3466653 36999999999743
No 156
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.83 E-value=0.00013 Score=68.28 Aligned_cols=101 Identities=29% Similarity=0.358 Sum_probs=70.8
Q ss_pred CcccCCCEEEEEcC-ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
+..+.||+|.|+|. |.||+.+++.|+...| .+++.++++... ...+...+ . .....++++.+.++
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~-----~~~i~~l~~~l~~a 216 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------G-----GGKILSLEEALPEA 216 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------c-----cccHHhHHHHHccC
Confidence 45799999999999 8999999999853456 488888886543 22211111 0 01124688999999
Q ss_pred CEEEEccCCCccccc-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672 146 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE 187 (294)
Q Consensus 146 DiV~l~~Plt~~t~~-li~~~~l~~mk~gailIN~aRG~~vd~ 187 (294)
|+|+.+.. .... +++.+.+ +++.++||.|+..=||.
T Consensus 217 DiVv~~ts---~~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 217 DIVVWVAS---MPKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CEEEECCc---CCcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 99987764 2234 4777654 79999999999876764
No 157
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=0.00015 Score=65.98 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=65.0
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+... ..++.+..++||
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL-~~~~atVtichs~----------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLL-LNENATVTIAHSR----------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 568999999999996 5799999998 5778999887532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++ -.+++..+. .|+|+++||++--.
T Consensus 203 IvI~AvG----~~~~i~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 203 ILVVATG----LAKFVKKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred EEEEecC----CcCccCHHH---cCCCCEEEEccCcc
Confidence 9999998 245677766 47999999998654
No 158
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.83 E-value=0.00013 Score=62.74 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=65.1
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc---ccccCCHHHHhhc
Q 022672 69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT---WKRASSMDEVLRE 144 (294)
Q Consensus 69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~ 144 (294)
..+.++++.|+|. |.+|+.+++.|+ ..|.+|+.++|+... .+.+.+.+.. ....... .....++.+.+++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA----RFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh----hcCCcEEEeeCCCHHHHHHHHhc
Confidence 3578999999995 999999999984 678899999887543 2222221110 0000010 1112344578899
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 185 (294)
+|+|+.+.|....+ .+ ..-...+++.+++|+.+...+
T Consensus 98 ~diVi~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 98 ADVVFAAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCEEEECCCCCcee--ch--hhhcccCceeEEEEccCCCCC
Confidence 99999998854321 11 111124557778887776544
No 159
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.81 E-value=9.8e-05 Score=68.69 Aligned_cols=105 Identities=23% Similarity=0.307 Sum_probs=63.3
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVL-READVISLHP 152 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~ 152 (294)
+|+|||.|.||..+|..| ...|.+|..|+++... .+..... .+.........+.......++++.+ ..+|+|++++
T Consensus 2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav 79 (326)
T PRK14620 2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTT-FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV 79 (326)
T ss_pred EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHH-HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence 699999999999999998 4678999999986532 2211110 0000000000111122345677766 5899999999
Q ss_pred CCCccccccccHHHHh-cCCCCcEEEEcCCCc
Q 022672 153 VLDKTTYHLINKERLA-TMKKEAILVNCSRGP 183 (294)
Q Consensus 153 Plt~~t~~li~~~~l~-~mk~gailIN~aRG~ 183 (294)
|. .++...+ ++... .+++++.+|.+..|=
T Consensus 80 ks-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 80 PT-QQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CH-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 93 3444443 33333 567777777776664
No 160
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.81 E-value=0.00016 Score=65.99 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=53.6
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+..+.++++.|+|.|.+|+++++.| ...| .+|++++|+.... +.+.+.+. ... ...+ ..++.+.+.++|
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~----~~~--~~~~--~~~~~~~~~~~D 187 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFG----ALG--KAEL--DLELQEELADFD 187 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hcc--ceee--cccchhccccCC
Confidence 3468899999999999999999998 5888 6899999986542 22222211 000 0111 113456778999
Q ss_pred EEEEccCCC
Q 022672 147 VISLHPVLD 155 (294)
Q Consensus 147 iV~l~~Plt 155 (294)
+|+.++|..
T Consensus 188 ivInaTp~g 196 (278)
T PRK00258 188 LIINATSAG 196 (278)
T ss_pred EEEECCcCC
Confidence 999999954
No 161
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.80 E-value=0.00013 Score=67.69 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
+++||||.|..|+.-++.+..-++. +|.+|++++.. .+.+.+.. .. ....+....+.++.+++||+|+.|.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~----~~---~~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARL----RD---LGVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHH----HC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhh----cc---ccccceeccchhhhcccCCEEEEcc
Confidence 4899999999999999887656766 68999998653 34444322 22 1334456689999999999999998
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 184 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~ 184 (294)
|.+..+ -+++.+ .++||+.++.++....
T Consensus 201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence 854332 667655 5789999999986543
No 162
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00014 Score=66.34 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=64.4
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.++.+. .++++..++||
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~AD 204 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQAD 204 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence 468999999999995 6899999998 57889999876421 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+|+.++. ..+++..++ .|+|+++||++-
T Consensus 205 IvIsAvG----k~~~i~~~~---ik~gavVIDvGi 232 (284)
T PRK14177 205 IIVGAVG----KPEFIKADW---ISEGAVLLDAGY 232 (284)
T ss_pred EEEEeCC----CcCccCHHH---cCCCCEEEEecC
Confidence 9999997 355677766 579999999975
No 163
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.78 E-value=0.00036 Score=71.56 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=83.7
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCC-C-------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQ-P-------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~-~-------~~~~~~~~l~ell 142 (294)
++|+|||.|.||+.+|..++...|++|+.||++....... ......... ..+.. + .......+++ .+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGV-KRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 5899999999999999986434799999999986532111 111111111 11110 0 1122345664 57
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~ 208 (294)
++||+|+=++|..-+.+.-+-++.-+.++++++|.... +-+....|.+.++. .-+..++--|.
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecCC
Confidence 89999999999888888777777778889998886433 33556667777643 33455655553
No 164
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.00021 Score=65.18 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=64.1
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+ ..++.+..++||
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALL-LKENCSVTICHSK----------------------------THNLSSITSKAD 204 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 457999999999995 5799999988 5778999877532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
+|+.++. -.+++..++ .|+|+++||+|--
T Consensus 205 IvV~AvG----kp~~i~~~~---vk~GavVIDvGin 233 (288)
T PRK14171 205 IVVAAIG----SPLKLTAEY---FNPESIVIDVGIN 233 (288)
T ss_pred EEEEccC----CCCccCHHH---cCCCCEEEEeecc
Confidence 9999997 246787776 4799999999743
No 165
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.00023 Score=64.69 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=65.0
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.++.+. .++.+..++||
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~T----------------------------~~l~~~~~~AD 203 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSKT----------------------------KNLKEVCKKAD 203 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence 457999999999995 5899999987 57789998876421 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++ -.+++..++ .|+|+++||++--.
T Consensus 204 IvIsAvG----kp~~i~~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 204 ILVVAIG----RPKFIDEEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred EEEEcCC----CcCccCHHH---cCCCcEEEEeeccc
Confidence 9999998 245687776 58999999997433
No 166
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00016 Score=65.96 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=65.8
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+ ..++++..++||
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALL-LREDATVTLAHSK----------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 468999999999985 6899999998 5778999877532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 184 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~ 184 (294)
+|++++. ..++++.+++ |+|+++||++.-.+
T Consensus 201 IvIsAvG----kp~~i~~~~v---k~GavVIDVGin~~ 231 (287)
T PRK14173 201 VLVVAVG----RPHLITPEMV---RPGAVVVDVGINRV 231 (287)
T ss_pred EEEEecC----CcCccCHHHc---CCCCEEEEccCccc
Confidence 9999997 2467777764 89999999986553
No 167
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00018 Score=65.49 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=64.9
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+..+ ..++++..++||
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~atVtichs~----------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCC
Confidence 457999999999995 5799999998 5779999877532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+++++ -.++++.++ +|+|+++||++--.
T Consensus 202 IvI~AvG----~p~~i~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 202 ILVVAVG----VPHFIGADA---VKPGAVVIDVGISR 231 (282)
T ss_pred EEEEccC----CcCccCHHH---cCCCcEEEEeeccc
Confidence 9999998 355687775 57999999997543
No 168
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.74 E-value=0.00011 Score=69.14 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccH
Q 022672 85 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 164 (294)
Q Consensus 85 G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~ 164 (294)
|..+|+.| ...|.+|++||++.....+...+. +...+ .....+..+++++||+|++++|....++.++ .
T Consensus 32 G~~MA~~L-a~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEF-AEAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHH-HhCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 67889887 467899999998765321101110 11111 2334578888999999999999544366666 4
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 022672 165 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 195 (294)
Q Consensus 165 ~~l~~mk~gailIN~aRG~~vd~-~aL~~aL~ 195 (294)
+....+++++++||++.++.... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67788999999999999876655 55556663
No 169
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00016 Score=66.23 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=65.0
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+... ..++++..++||
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALML-LAANATVTIAHSR----------------------------TQDLASITREAD 203 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 468999999999995 5799999998 5779999887532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+++++- .+++..++ +|+|+++||+|--.
T Consensus 204 IvIsAvGk----p~~i~~~~---ik~gavVIDvGin~ 233 (297)
T PRK14186 204 ILVAAAGR----PNLIGAEM---VKPGAVVVDVGIHR 233 (297)
T ss_pred EEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence 99999982 35777766 57999999998654
No 170
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.00038 Score=65.48 Aligned_cols=163 Identities=18% Similarity=0.254 Sum_probs=112.0
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l 150 (294)
..||+||+|-||+.+|..+ ...|.+|.+|+|+..+. +.|... +... -....+.+++|++ +.-.-|++
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence 4699999999999999997 58899999999987653 344322 1211 1233456777764 56677877
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 230 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia 230 (294)
++-.......+| ++.+..|.+|-++|+-+...--|+..-.++|.+..|.+.+.-|...|--.-+ =|.+ +-
T Consensus 74 MVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GPSi-----Mp 143 (473)
T COG0362 74 MVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GPSI-----MP 143 (473)
T ss_pred EEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CCCc-----CC
Confidence 775432112333 6788889999999999999999999999999999999999999988853211 0111 12
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 022672 231 SASKWTREGMATLAALNVLGKIKGYPI 257 (294)
Q Consensus 231 ~~t~~~~~~~~~~~~~nl~~~~~g~~~ 257 (294)
|-+.++++...-. .+.|.+-..|+|+
T Consensus 144 GG~~eay~~v~pi-l~~IaAk~~g~pC 169 (473)
T COG0362 144 GGQKEAYELVAPI-LTKIAAKVDGEPC 169 (473)
T ss_pred CCCHHHHHHHHHH-HHHHHhhcCCCCc
Confidence 4455565554443 3445555566665
No 171
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00017 Score=65.65 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=64.6
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+. .++++..++||
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL-~~~~atVt~chs~T----------------------------~nl~~~~~~AD 202 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATML-LNAGATVSVCHIKT----------------------------KDLSLYTRQAD 202 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence 457999999999995 5799999998 57799998875421 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
+|+.++. -.+++..++ .|+|+++||++--
T Consensus 203 IvIsAvG----kp~~i~~~~---vk~GavVIDvGin 231 (282)
T PRK14166 203 LIIVAAG----CVNLLRSDM---VKEGVIVVDVGIN 231 (282)
T ss_pred EEEEcCC----CcCccCHHH---cCCCCEEEEeccc
Confidence 9999998 356687775 5799999999743
No 172
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.74 E-value=0.00047 Score=70.83 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=85.8
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||.|.||..+|..++...|++|+.||++....... ....+.... ..+... .......++ +.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKV-KRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 6899999999999999987436799999999976532111 111111111 111100 012234566 457
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~ 208 (294)
++||+|+=++|.+.+.+.-+-++.-+.++|+++|... -+-+....|.+.+.. .-+..++--|.
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecCC
Confidence 9999999999988888877777777889999998654 344666777777643 33456666664
No 173
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.72 E-value=0.00053 Score=70.54 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=84.8
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||.|.||..+|..++ ..|++|+.||.+...... .....+.... ..+... .......++++ +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~-~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQV-ERGKIDGAKMAGVLSSIRPTLDYAG-F 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCChhhHHHHHhCeEEeCCHHH-h
Confidence 68999999999999999875 679999999998754221 1111111111 111110 01223456644 6
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~ 208 (294)
++||+|+=++|..-+.+.-+-++.-+.++++++|... -+.+....|.+.+.. .-+..++--|.
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASN--TSTISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-CccEEEEecCC
Confidence 9999999999988888877777777889999888544 334556677777743 33455555553
No 174
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.0002 Score=65.24 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=63.8
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+. .++.+..++||
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~AD 203 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKAD 203 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcC
Confidence 458999999999995 5899999998 57789998875321 36888899999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+|+.+++ -.+++..++ .|+|+++||++-
T Consensus 204 IvIsAvG----kp~~i~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 204 ILIVAVG----KPNFITADM---VKEGAVVIDVGI 231 (282)
T ss_pred EEEEccC----CcCcCCHHH---cCCCcEEEEecc
Confidence 9999998 345677765 579999999974
No 175
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.70 E-value=0.00032 Score=65.39 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=66.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..++++|||.|.+|+..++.++...++ +|.+|++++... +++.+.+ .... +.......+++++++++|+|+.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~~--~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSKF--NTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEE
Confidence 467899999999999988776444565 688899987543 3333221 1111 1222345789999999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
|.|.. .-++. +.+|+|+.++.++.
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCC
Confidence 99843 44554 45699999988864
No 176
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00021 Score=65.45 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=65.2
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+. .++.+..++||
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~AD 205 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSAT----------------------------RDLADYCSKAD 205 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence 468999999999995 5899999987 57899998876421 36889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.++. -.+++..+++ |+|+++||++--.
T Consensus 206 IvVsAvG----kp~~i~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 206 ILVAAVG----IPNFVKYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred EEEEccC----CcCccCHHHc---CCCCEEEEecccc
Confidence 9999998 3456777764 7999999997543
No 177
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.00029 Score=65.50 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
-++++|+|.|..++.-++.+...+.. +|.+|++++... +.+.+. +... ........+.++.+++||+|+.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQAL---GFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhc---CCcEEEECCHHHHhcCCCEEEEe
Confidence 46899999999999999887555555 799999987653 333321 1111 12333457899999999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
.| .+.-+++.+. +|||+.++.++.
T Consensus 200 T~---s~~P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 200 TP---SREPLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred cC---CCCceeCHHH---cCCCcEEEecCC
Confidence 76 4457776654 689999998873
No 178
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.67 E-value=0.00045 Score=62.66 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=69.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV 148 (294)
...+++++|+|.|.+|++++..| ...|.+|++++++..+. +.+.+.+ ...+ .. ...++++. +.++|+|
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~--~~---~~~~~~~~~~~~~Div 182 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYG--EI---QAFSMDELPLHRVDLI 182 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcC--ce---EEechhhhcccCccEE
Confidence 35689999999999999999998 46788999999876432 2222211 1101 00 11233332 3589999
Q ss_pred EEccCCC--ccccc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672 149 SLHPVLD--KTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 197 (294)
Q Consensus 149 ~l~~Plt--~~t~~-li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 197 (294)
+.++|.. ++... .++ ...++++.+++++...... + .|.+..++.
T Consensus 183 Inatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~ 229 (270)
T TIGR00507 183 INATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSL 229 (270)
T ss_pred EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHC
Confidence 9999964 11111 122 3456788889988776543 3 466655554
No 179
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.66 E-value=0.00024 Score=65.16 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=65.1
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+..+ ..++++..++||
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSR----------------------------TPDPESIVREAD 212 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 468999999999996 5799999988 5779999987532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.++.- .+++..++ .|+|+++||+|--.
T Consensus 213 Ivv~AvGk----~~~i~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 213 IVIAAAGQ----AMMIKGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred EEEEcCCC----cCccCHHH---cCCCCEEEEeeccc
Confidence 99999972 36787776 57999999998543
No 180
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=0.0003 Score=64.13 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=79.7
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhc--CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 144 (294)
+.++.||++.|||-+ .+|+.+|.+|. . .++.|+.+... ..++++.+++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~-~~~~~atVtvchs~----------------------------T~~l~~~~k~ 203 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLT-RRSENATVTLCHTG----------------------------TRDLAAHTRR 203 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHh-hccCCCEEEEeCCC----------------------------CCCHHHHHHh
Confidence 457999999999984 68999999884 4 68999877532 1368899999
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeE
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 224 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvi 224 (294)
||+|+.++.- .+++..++ +|+|+++||++.-.+ .+|++. =||- .+ ..... -.
T Consensus 204 ADIvV~AvGk----p~~i~~~~---ik~GavVIDvGin~~----------~~gkl~---GDvd-~~------v~~~a-~~ 255 (284)
T PRK14193 204 ADIIVAAAGV----AHLVTADM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH-PD------VWEVA-GA 255 (284)
T ss_pred CCEEEEecCC----cCccCHHH---cCCCCEEEEcccccc----------CCCcEE---eecC-Hh------HHhhC-CE
Confidence 9999999982 35787776 579999999986543 234433 3554 21 12222 26
Q ss_pred EccCCCCCcHHH
Q 022672 225 VVPHIASASKWT 236 (294)
Q Consensus 225 iTPHia~~t~~~ 236 (294)
+||--+|.-.-+
T Consensus 256 iTPVPGGVGp~T 267 (284)
T PRK14193 256 VSPNPGGVGPMT 267 (284)
T ss_pred EeCCCCChhHHH
Confidence 899988865433
No 181
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.65 E-value=0.00023 Score=66.62 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=65.0
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||=+ .+|+.+|.+| ..-++.|+.+..+ ..++++..++||
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSR----------------------------TKNPEEITREAD 276 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 468999999999995 5899999988 5788999887532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.++. ..+++..++ .|+|+++||++--.
T Consensus 277 IVIsAvG----kp~~i~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 277 IIISAVG----QPNMVRGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred EEEEcCC----CcCcCCHHH---cCCCCEEEeccccc
Confidence 9999997 355677776 57999999997543
No 182
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00027 Score=64.51 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=63.6
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhc----CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 142 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~----~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 142 (294)
+.++.||++.|||-+ .+|+.+|.+| .. -+++|..+..+. .++.+.+
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~ 202 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALML-GAPGKFANATVTVCHSRT----------------------------PDLAEEC 202 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHH
Confidence 468999999999995 5799999988 45 678888765321 3688999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
++||+|+.+++ ..+++..+++ |+|+++||++-
T Consensus 203 ~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 203 READFLFVAIG----RPRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred HhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeee
Confidence 99999999996 3567888776 89999999974
No 183
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00034 Score=63.87 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=63.9
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcC----CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 142 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 142 (294)
+.++.||++.|||-+ .+|+.+|.+|. .- ++.|+.+..+ ..++++.+
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~ 198 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEIL 198 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHH
Confidence 468999999999996 57999999884 44 7888876532 13688999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
++||+|+.+++- .+++..++ .|+|+++||++--.
T Consensus 199 ~~ADIvV~AvG~----p~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 199 KTADIIIAAIGV----PLFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred hhCCEEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence 999999999972 46787776 47999999998544
No 184
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.64 E-value=0.00028 Score=69.49 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=68.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhh--hcCCCC---cccc--ccCC-----
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGEQP---VTWK--RASS----- 137 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~--~~~~----- 137 (294)
...+.+|.|+|.|.+|...++.+ +.+|++|+++|.++.... . .+.++.... .....+ .++. ...+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle-~-aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAE-Q-VESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H-HHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 45799999999999999998874 899999999999875432 1 122222100 000000 0000 0001
Q ss_pred ---HHHHhhcCCEEEEccCCCcc-ccccccHHHHhcCCCCcEEEEcCC
Q 022672 138 ---MDEVLREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 138 ---l~ell~~aDiV~l~~Plt~~-t~~li~~~~l~~mk~gailIN~aR 181 (294)
+.+.++++|+|+.+..-... .-.++.++.++.||+|+++|+++=
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 12223579999998863221 234557999999999999999963
No 185
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.63 E-value=0.00059 Score=70.35 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=86.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||.|.||..+|..++ ..|++|+.+|++....... ....+.... ..+... .......+++ .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~~-~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKV-KRKKITSLERDSILSNLTPTLDYS-GF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 58999999999999999874 6799999999987542211 111111111 111110 1122345665 46
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~ 208 (294)
++||+|+=++|.+-+.+.-+-++.-+.++++++|... -+-++..+|.+.+.. .-+..++.-|.
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEeccC
Confidence 8999999999988888877777777889999988632 344667777777754 33566666664
No 186
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00032 Score=63.82 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=64.8
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+ ..++++..++||
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMML-LERHATVTIAHSR----------------------------TADLAGEVGRAD 202 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence 457999999999995 5899999998 5678999887532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.+++ -.+++..++ .|+|+++||++--.
T Consensus 203 IvI~AvG----k~~~i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 203 ILVAAIG----KAELVKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred EEEEecC----CcCccCHHH---cCCCCEEEEeecee
Confidence 9999997 256787776 47999999997544
No 187
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.62 E-value=0.00027 Score=65.85 Aligned_cols=80 Identities=16% Similarity=0.330 Sum_probs=64.7
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.++.||++.|||=+ .+|+.+|.+| ..-++.|..+..+ ..++++..++||
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLL-QRHDATVSTVHAF----------------------------TKDPEQITRKAD 259 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCC
Confidence 468999999999996 5799999987 5778999877532 136889999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+|+.++. -.+++..++ +|+|+++||+|--.
T Consensus 260 IvIsAvG----kp~~v~~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 260 IVIAAAG----IPNLVRGSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred EEEEccC----CcCccCHHH---cCCCCEEEEccccc
Confidence 9999998 355677766 57999999998543
No 188
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.60 E-value=0.00049 Score=62.07 Aligned_cols=127 Identities=19% Similarity=0.114 Sum_probs=70.0
Q ss_pred HHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672 88 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 166 (294)
Q Consensus 88 vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~ 166 (294)
+|+.|. +++..+|++||+++....... ..+.. .....+ .+.++++|+|++|+|. ..+..++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~---------~~g~~---~~~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~ 65 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL---------ELGII---DEASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI 65 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH---------HTTSS---SEEESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH---------HCCCe---eeccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence 355552 245689999999876532221 11211 122233 5778999999999993 3444444 566
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe-eCCCCCCC-C---CCCccCCCCeEEccCCC
Q 022672 167 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPY-M---KPGLSEMKNAIVVPHIA 230 (294)
Q Consensus 167 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l-DV~~~EP~-~---~~~L~~~~nviiTPHia 230 (294)
...+++|+++++++.-+.--.+++.+.+.. .....+. =-|.+|-- + ...|+.-.++++||+-.
T Consensus 66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 66 APYLKPGAIVTDVGSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HCGS-TTSEEEE--S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 677999999999987665445555555552 2222221 12233211 1 23578888999999865
No 189
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00033 Score=64.25 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=63.7
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhc---CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 143 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 143 (294)
+.++.||++.|||-+ .+|+.+|.+|.+. .+++|..+.... .++++.++
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~ 205 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTR 205 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHH
Confidence 468999999999995 5799999987432 477877664321 36889999
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+||+|+.+++- .++|..+++ |+|+++||+|-..
T Consensus 206 ~ADIvI~Avg~----~~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 206 QADILIAAIGK----ARFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred hCCEEEEecCc----cCccCHHHc---CCCCEEEEeeccc
Confidence 99999999962 277888887 8999999997543
No 190
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.59 E-value=0.00051 Score=64.11 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=66.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..++++|||.|.+|+..++.|+...+. +|.+|+++..+. +.+...+ ... ....+....++++.+++||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~~----~~~--~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQL----SSL--LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhccCCEEEE
Confidence 357899999999999999987435674 689999987542 3333222 111 01223345789999999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+.|. ..-++..+. +|+|+.+..++
T Consensus 201 aT~s---~~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 201 TTPS---ETPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred ecCC---CCcEecHHH---cCCCcEEEeeC
Confidence 9874 345666554 68998887775
No 191
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.58 E-value=0.00026 Score=64.06 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=81.9
Q ss_pred CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
+.+|+||++.|||-++ +|+.++..| ...++.|.++..+. .++.+..++||
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~AD 201 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNAD 201 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCC
Confidence 4579999999999986 599999998 57899999876432 36888999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEc
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 226 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiT 226 (294)
+|+.++- -.+++..++ .|+|+++|+++--.+-+ +++ .=||--.+ +....-.+|
T Consensus 202 Ivv~AvG----~p~~i~~d~---vk~gavVIDVGinrv~~----------~kl---~GDVdf~~-------v~~~a~~iT 254 (283)
T COG0190 202 IVVVAVG----KPHFIKADM---VKPGAVVIDVGINRVND----------GKL---VGDVDFDS-------VKEKASAIT 254 (283)
T ss_pred EEEEecC----Ccccccccc---ccCCCEEEecCCccccC----------Cce---EeeccHHH-------HHHhhcccC
Confidence 9999986 256666544 58999999997544322 344 33553222 223344688
Q ss_pred cCCCCCcHHHH
Q 022672 227 PHIASASKWTR 237 (294)
Q Consensus 227 PHia~~t~~~~ 237 (294)
|=-||.-.-+.
T Consensus 255 PVPGGVGPmTv 265 (283)
T COG0190 255 PVPGGVGPMTV 265 (283)
T ss_pred CCCCccCHHHH
Confidence 88888765443
No 192
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.58 E-value=0.00045 Score=63.95 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=73.0
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhh-cCCCCc-cccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~ 151 (294)
++|+|||.|.||..+|.+| ...|.+|..+.+...... .. .+..+.. .+.... ......+.+ .+..+|+|++|
T Consensus 6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~---~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAV---RE-NGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHH---Hh-CCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 5899999999999999998 567899998887643211 11 1111100 010000 011112333 46789999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 203 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~ 203 (294)
++. .++...+ +.....+++++.++...-| +-.++.|.+.+-..++.++.
T Consensus 80 vK~-~~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 80 LKT-TANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred ecC-CChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 994 3344332 3444556788888887665 44566777777666665553
No 193
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.57 E-value=0.00056 Score=63.19 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
-+++||||.|..|+.-++.+..-+.. +|.+|+++.... +.|.+.. .... +.......+.++.+++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~----~~~~--~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERF----SKEF--GVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEEe
Confidence 47899999999999988877555665 689999987643 3333322 1111 22234457899999999999998
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
.| .+.-++..+. +|||+.+.-++.
T Consensus 190 T~---s~~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 190 TN---SDTPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred cC---CCCcEecHHH---cCCCceEEecCC
Confidence 87 3457776664 578877776653
No 194
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.56 E-value=0.00046 Score=63.17 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=63.3
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhc---CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 143 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 143 (294)
+.++.||++.|||-+ .+|+.+|.+|... +++.|+.+... ..++.+..+
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~ 203 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECL 203 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHh
Confidence 457999999999995 5899999988422 27888877432 136889999
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+||+|+.+++ ..+++..++ .|+|+++||++--.
T Consensus 204 ~ADIvIsAvG----kp~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 204 EADIIIAALG----QPEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred hCCEEEEccC----CcCccCHHH---cCCCCEEEEecCcc
Confidence 9999999998 245677665 58999999997543
No 195
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.56 E-value=0.001 Score=58.95 Aligned_cols=117 Identities=22% Similarity=0.322 Sum_probs=70.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCC---------chhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 138 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (294)
.++.|++|.|.|+|.+|+.+|+.| ..+|++|++. |.. ......+.....+... ..+ .... .+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~----~~~-~~~~-~~~ 99 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL----GFP-GAER-ITN 99 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc----cCC-Ccee-cCC
Confidence 368999999999999999999998 6899999954 441 1111111111111000 000 0001 122
Q ss_pred HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
++++ .+||+++-|.+ .+.++.+....++ =.+++-.+-+.+- ..-.+.|+++.+.
T Consensus 100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 2322 47899988875 5567788777776 3456666777763 5555777777654
No 196
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00056 Score=62.79 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=63.3
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcC---CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 143 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 143 (294)
+.++.||++.|||-+ .+|+.+|.+|.+.+ ++.|..+... ..++++..+
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~ 203 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTR 203 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHh
Confidence 457999999999995 57999999884333 7888876432 136889999
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+||+|+.++. -.+++..++ +|+|+++||++--.
T Consensus 204 ~ADIvIsAvG----kp~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 204 RADIVVAAAG----VPELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred hCCEEEEccC----CcCccCHHH---cCCCCEEEEccccc
Confidence 9999999986 245777765 57999999998544
No 197
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.54 E-value=0.0004 Score=60.38 Aligned_cols=107 Identities=16% Similarity=0.246 Sum_probs=69.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC---chhHHHH-H---------HhhhhhhhhhcCCCCcccc-
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKANGEQPVTWK- 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~- 133 (294)
..|..++|+|+|+|.+|..+|+.|+ ..|+ +++.+|+. .+..... + .+...+.+.... ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~ 94 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEA 94 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEE
Confidence 3588899999999999999999985 6788 68889876 2110000 0 000011111111 111111
Q ss_pred -----ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672 134 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178 (294)
Q Consensus 134 -----~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN 178 (294)
...+++++++++|+|+-| ..+.+++.++.......+++..++..
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 123466788999999999 56888999998888888887666664
No 198
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00069 Score=63.16 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
-++++|||.|..++.-.+.+..-++. +|.+|++++... +++.. .+...+.. ......+.+++++.||+|+.+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~----~l~~~~~~--~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFAA----RLRKRGGE--AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHHH----HHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence 35899999999999999987666776 688999987653 22222 12222221 234567999999999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
.|.++ -++..+. +|||+.+..++-
T Consensus 203 T~s~~---Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 203 TPSTE---PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred cCCCC---CeecHhh---cCCCcEEEecCC
Confidence 98543 6676665 569999999873
No 199
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.53 E-value=0.00057 Score=61.60 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=65.7
Q ss_pred CEEEEEcCChHHHHHHHHHhhc--CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 149 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~--~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~ 149 (294)
++|||||+|.||+.+++.|..+ .++++. ++++.... .+.+.. . .....+++++ ..+.|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~~------------~--~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALAG------------R--VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhhc------------c--CcccCCHHHHhhcCCCEEE
Confidence 5899999999999999987433 236654 45655422 221110 0 2345789997 58899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcC
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQN 197 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd---~~aL~~aL~~g 197 (294)
=|.+ ++.. -+-..+-++.|.-++=.|-|.+-| ++.|.++.+++
T Consensus 68 E~A~--~~av---~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 68 EAAG--QQAI---AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred ECCC--HHHH---HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 9987 2222 122334456677777788888887 44555555553
No 200
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.52 E-value=0.0008 Score=62.89 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..++++|||.|.+|+..+..++...+ -+|.+|+++..+ .+.+.+.+ ... ....+....++++++.+||+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~----~~~--~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADL----RAE--LGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----hhc--cCceEEEeCCHHHHHccCCEEEE
Confidence 35789999999999998887643355 478999988654 33333221 111 01222345789999999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
+.|. ...++..+. +++|+.+..+
T Consensus 204 aT~s---~~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 204 TTPS---EEPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred eeCC---CCcEecHHH---cCCCceEEee
Confidence 9874 345665544 5788766654
No 201
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00048 Score=63.18 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=63.3
Q ss_pred CcccCCCEEEEEcCC-hHHHHHHHHHhhcC----CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672 68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 142 (294)
Q Consensus 68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 142 (294)
+.++.||++.|||-+ .+|+.+|.+|. .- ++.|+.+... ..++++..
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~atVtv~hs~----------------------------T~~l~~~~ 206 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMT-QKGPGANATVTIVHTR----------------------------SKNLARHC 206 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHH-hcccCCCCEEEEecCC----------------------------CcCHHHHH
Confidence 568999999999995 68999999884 43 7888876432 13688999
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
++||+|+.++. -.+++..++ +|+|+++||++.-.
T Consensus 207 ~~ADIvVsAvG----kp~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 207 QRADILIVAAG----VPNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred hhCCEEEEecC----CcCccCHHH---cCCCCEEEecCCCc
Confidence 99999999986 245677766 57999999998644
No 202
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.52 E-value=0.00081 Score=69.15 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=83.0
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 142 (294)
++|+|||.|.||..+|..++ ..|++|+.+|++....... ....+...+. .+... .......+++ .+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVE-RGRITPAKMAGVLNGITPTLSYA-GF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 57999999999999999875 6799999999987543211 1111111111 11100 0122334564 46
Q ss_pred hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCC
Q 022672 143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207 (294)
Q Consensus 143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~ 207 (294)
++||+|+=++|..-+.+.-+-++.-+.++|+++|... -+-++..+|.+.++. .-+..++=-|
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasn--TS~l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 391 DNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASN--TSTISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHhhcCC-cccEEEEecC
Confidence 9999999999988887777777777889999988644 334566677777643 3334454444
No 203
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.52 E-value=0.00067 Score=63.82 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=66.2
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
-++++|||.|..++.-++.+..-+.. +|.+|++++... +.+.+.. .. ....+....++++.+++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARNL----AG---PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHHH----Hh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988876555665 689999987643 3333222 11 122334467899999999999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
.|. .+..-++..+ .+|||+.+.-++
T Consensus 201 T~S-~~~~Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 201 TAD-KTNATILTDD---MVEPGMHINAVG 225 (346)
T ss_pred cCC-CCCCceecHH---HcCCCcEEEecC
Confidence 873 2222456554 458999877765
No 204
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.50 E-value=0.00023 Score=56.62 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=53.2
Q ss_pred EEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 75 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 75 tvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
+|+||| .|.+|+.+.++|.+...+++.. ++++.... ..+...+. ...+........ .+. +.+.++|+|++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADP-EELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSG-HHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cch-hHhhcCCEEEecC
Confidence 699999 9999999999997777888654 44433111 11111110 000001111111 233 4459999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
|.. .+..+ .... ++.|..+|+.+.
T Consensus 75 ~~~-~~~~~-~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 75 PHG-ASKEL-APKL---LKAGIKVIDLSG 98 (121)
T ss_dssp CHH-HHHHH-HHHH---HHTTSEEEESSS
T ss_pred chh-HHHHH-HHHH---hhCCcEEEeCCH
Confidence 832 22222 1222 478889999864
No 205
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.50 E-value=0.00099 Score=63.48 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=68.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCC-C-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFK-M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
-++++|||.|..++.-++.++.-+. . +|.+|+++..+. +.|.+.+ .........+..+.+.++++++||+|+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~~~~~~v~~~~s~~eav~~ADIVvt 229 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETYPQITNVEVVDSIEEVVRGSDIVTY 229 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhcCCCceEEEeCCHHHHHcCCCEEEE
Confidence 4789999999999999988754453 4 799999987543 3333322 1111000113346789999999999999
Q ss_pred ccCCCc---cccccccHHHHhcCCCCcEEEEcCC
Q 022672 151 HPVLDK---TTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 151 ~~Plt~---~t~~li~~~~l~~mk~gailIN~aR 181 (294)
|.+.+. .+.-++..+. +|||+.++.++.
T Consensus 230 aT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 230 CNSGETGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred ccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 987433 3446776654 579998877655
No 206
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.49 E-value=0.0004 Score=60.77 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=62.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhc-CCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+|||||+|.||+.+.+.+..+ .+++ +.+||+...+..+.. ...+.....+++|++++.|+++=|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~-------------~~~~~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELE-------------ASVGRRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHH-------------hhcCCCccccHHHHhhccceeeee
Confidence 3799999999999999986322 3455 677998876532210 011112237899999999999988
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a 189 (294)
.. ++... .-..+.|+.|.=+|=+|-|.+.|+.=
T Consensus 68 AS--~~Av~---e~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 68 AS--PEAVR---EYVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred CC--HHHHH---HHhHHHHhcCCCEEEEechhccChHH
Confidence 76 33222 22334456665566677788886543
No 207
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.47 E-value=0.00051 Score=63.81 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=58.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
.+|||||+|+||+.+++.+.+.-++++.+ +|++....... ..+.....+.++++.+.|+|++|.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874444899876 68774222110 112223356777889999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
|.. ++ -......|+.|.-+|+..
T Consensus 69 Ps~--th---~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 69 GSA--TD---IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred CCc--cC---HHHHHHHHHcCCCEEECC
Confidence 843 23 144445567777788774
No 208
>PRK06046 alanine dehydrogenase; Validated
Probab=97.47 E-value=0.0011 Score=61.99 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=64.9
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
-+++||||.|.+|+..++.++...+. +|.+||++.... +.+.+.+. .. .+.......+++++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~~--~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----SV--VGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----hh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence 46899999999999999887544566 467799886542 33332221 10 1122233568999997 9999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
.|. +.-++..+. +|+|+.+..++-
T Consensus 201 Tps---~~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 201 TPS---RKPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecCC
Confidence 984 346666654 589999888873
No 209
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.45 E-value=0.00051 Score=59.93 Aligned_cols=93 Identities=19% Similarity=0.261 Sum_probs=61.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV 148 (294)
++.|++|.|||.|.+|..-++.| ..+|++|+++++........+.+ .+ .+.+.. ... .+.+..+|+|
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~lV 73 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFLV 73 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEEE
Confidence 68999999999999999999987 58999999999876544333211 11 111111 112 3456788888
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
+.+... ++ +|.......+...++||+
T Consensus 74 i~at~d-~~----ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 74 IAATDD-EE----LNRRVAHAARARGVPVNV 99 (205)
T ss_pred EECCCC-HH----HHHHHHHHHHHcCCEEEE
Confidence 877652 22 345555555555677775
No 210
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.44 E-value=0.003 Score=58.32 Aligned_cols=130 Identities=24% Similarity=0.298 Sum_probs=82.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCCc--------cccccCCHHHH
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQPV--------TWKRASSMDEV 141 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~l~el 141 (294)
-++|||||.|.||+.+|..++ ..|.+|..+|++....... ........... +.... ......++. .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A-~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~-g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFA-LAGYDVVLKDISPEALERALAYIEKNLEKLVEK-GKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHh-hcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhc-CCCChhhHHHHHhhccccCchh-H
Confidence 378999999999999999875 4679999999985432111 11111111111 11110 011223343 6
Q ss_pred hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCC
Q 022672 142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 209 (294)
Q Consensus 142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~ 209 (294)
+++||+|+=++|-+-+.++-+-++.-+..+|+++|- |||+ +.-.+|.++++. .=+..++=-|.+
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~r-per~iG~HFfNP 144 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKR-PERFIGLHFFNP 144 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCC-chhEEEEeccCC
Confidence 789999999999888877777777778889999885 4433 556677777743 335566655543
No 211
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.43 E-value=0.0016 Score=59.72 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=53.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.++++.|||.|.+|++++..| ...|+ +|+.+|++..+. +.+.+.+.. .. .........++.+.++++|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l~~----~~-~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADELNA----RF-PAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHHHh----hC-CCeEEEeccchHhhhCCCCEE
Confidence 57889999999999999999997 47887 799999986543 222222111 00 011112234566678899999
Q ss_pred EEccCC
Q 022672 149 SLHPVL 154 (294)
Q Consensus 149 ~l~~Pl 154 (294)
+.+.|.
T Consensus 197 InaTp~ 202 (284)
T PRK12549 197 VHATPT 202 (284)
T ss_pred EECCcC
Confidence 999984
No 212
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.42 E-value=0.00095 Score=62.14 Aligned_cols=131 Identities=16% Similarity=0.255 Sum_probs=72.1
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
+..++|+|||.|.+|..+|..++ ..| .++..+|...........+.. . ...............+++ .+++||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~-~-~~~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLK-H-FSTLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHh-h-hccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 45679999999999999998764 445 689999987643211111110 0 000011111222235666 679999999
Q ss_pred Ecc--CCCcc-cc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE--ee
Q 022672 150 LHP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 205 (294)
Q Consensus 150 l~~--Plt~~-t~--------~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~--~g~i~ga~--lD 205 (294)
++. |..+. ++ .++- .+.+....|.+++|+++-..-+-...+.+... ..++.|.+ ||
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 43321 11 1110 12333446788899986544333333433321 34566555 55
No 213
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.42 E-value=0.0007 Score=63.28 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=59.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|+++.|||.|.||+.+|+.| ...|+ ++++.+|+.... . + +.. ....-++..++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~----~------------~~~-~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--P----Y------------RTV-VREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--c----h------------hhh-hhhhhhcccCCCEE
Confidence 58999999999999999999998 56774 688888875320 0 0 000 00111445789999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
+.|..-|.....++..+.++..++ -+|||.+=.
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvP 263 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVP 263 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCC
Confidence 997433444455666666654332 377777543
No 214
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.41 E-value=0.00087 Score=64.10 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=67.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
+|.++++.|||+|.||.-+|+.| ...| .+|+..+|+..... .+...+ + .......++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~-~La~~~-------~---~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAE-ELAKKL-------G---AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHH-HHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence 48999999999999999999998 4777 47888888875432 222211 1 1223446777889999999
Q ss_pred EEccCCCccccccccHHHHhcC---CCCcEEEEcCCCc
Q 022672 149 SLHPVLDKTTYHLINKERLATM---KKEAILVNCSRGP 183 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~m---k~gailIN~aRG~ 183 (294)
+.+.. ....++..+.+... ++.-++||.+=..
T Consensus 243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 99964 45666766655332 1124778776443
No 215
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.38 E-value=0.0012 Score=61.02 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.+..... ...........++++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 47999999999999999874 4443 8999998654322111111110000 000112223467777 78999999999
Q ss_pred CCCcccccc-------ccH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE--ee
Q 022672 153 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 205 (294)
Q Consensus 153 Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aRG~~vd~~aL~~a--L~~g~i~ga~--lD 205 (294)
+ ++...+. .|. +.+....|++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 78 g-~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 G-LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred C-CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 8 3332221 111 22333457889999876443334444444 4444566665 66
No 216
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.35 E-value=0.0025 Score=56.09 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=68.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCch---------hHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQA---------TRLEKFVTAYGQFLKANGEQPVTWKRASSM 138 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (294)
.++.|++|.|.|+|++|+.+|+.| ...|.++++ .|.+.. ...+...+. .+..........+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~-------~~~~~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINYAVAL-------GGSARVKVQDYFPG 90 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhh-------CCccccCcccccCc
Confidence 368999999999999999999998 578886655 565430 111111110 00000000000111
Q ss_pred HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672 139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 199 (294)
Q Consensus 139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i 199 (294)
++++ .+||+++-|.+ .+.++.+....++ =.+++-.+.+++-+ .-.+.|++..+
T Consensus 91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi 144 (217)
T cd05211 91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI 144 (217)
T ss_pred ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 2222 48999999987 4478888887776 34666677777765 34556666544
No 217
>PLN02477 glutamate dehydrogenase
Probab=97.34 E-value=0.0077 Score=57.88 Aligned_cols=117 Identities=27% Similarity=0.362 Sum_probs=72.8
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCC----------chhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS 136 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
|.++.|+||.|.|+|++|+.+|+.| ...|++|++ .|.+ ... ..+.....+. +. . .+ +....
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g~-l~--~-~~-~a~~i- 272 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGGG-LK--G-FP-GGDPI- 272 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcCc-hh--c-cc-cceEe-
Confidence 4579999999999999999999997 689999984 4544 111 1011110000 00 0 00 01111
Q ss_pred CHHHH-hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 137 SMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 137 ~l~el-l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
+.+++ ..+||+++-|. ..+.|+++....++ =.+++-.+.+.+ . .+-.+.|++..|.
T Consensus 273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t-~ea~~~L~~rGI~ 329 (410)
T PLN02477 273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-D-PEADEILRKKGVV 329 (410)
T ss_pred cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-C-HHHHHHHHHCCcE
Confidence 22232 35899988775 46678888888875 447888888888 3 3345777776653
No 218
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.33 E-value=0.0002 Score=55.48 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=57.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.++|++|.|||.|.+|..-++.| ...|++|+++++.. ...+. ...+. ...+++.+.++|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~---------------~i~~~-~~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG---------------LIQLI-RREFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT---------------SCEEE-ESS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh---------------HHHHH-hhhHHHHHhhheEEE
Confidence 58999999999999999999997 68999999999875 11111 01111 123456688899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
.+.+. ++ +++......+.-.++||++
T Consensus 66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 66 AATDD-PE----LNEAIYADARARGILVNVV 91 (103)
T ss_dssp E-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred ecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence 88762 22 4455555566566788874
No 219
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0051 Score=57.32 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=115.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l 150 (294)
..+|+||++-||+.++-.+ ...|+.|.+|+|..++. +++... . ..........|+++++ +.-..|++
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skv-D~flan-------e-ak~~~i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKV-DEFLAN-------E-AKGTKIIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhH-HHHHHH-------h-hcCCcccCCCCHHHHHHhcCCCcEEEE
Confidence 4699999999999999886 47899999999987654 333221 1 1122234557888875 56778888
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC--CCccCCCCeEEccC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPH 228 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--~~L~~~~nviiTPH 228 (294)
.+-.......+| ++....|.+|-++|+-+...--|+..-.+.|.+..|...+.-|...|--.. +.| +|
T Consensus 77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl--Mp------- 146 (487)
T KOG2653|consen 77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL--MP------- 146 (487)
T ss_pred EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc--CC-------
Confidence 776544444444 677788999999999999999999999999999999999999998886432 223 22
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 022672 229 IASASKWTREGMATLAALNVLGKIKGYPI 257 (294)
Q Consensus 229 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~ 257 (294)
|.+.+++.++-..+..-....-.|+|.
T Consensus 147 --Gg~~~Awp~ik~ifq~iaakv~~~epC 173 (487)
T KOG2653|consen 147 --GGSKEAWPHIKDIFQKIAAKVSDGEPC 173 (487)
T ss_pred --CCChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445567777666554433333466775
No 220
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.33 E-value=0.0012 Score=63.61 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=63.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|+++.|||.|.+|+.+++.| ...|+ ++++++|+.... ..+...++ . .......++.+++.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~ra-~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEKA-QKITSAFR-------N--ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence 57899999999999999999998 46775 789999886432 33322221 0 0112235667889999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+.|.+. ...+|..+... .+..++|+.|=
T Consensus 247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence 999873 34556655543 22346666653
No 221
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.31 E-value=0.00059 Score=61.63 Aligned_cols=127 Identities=17% Similarity=0.285 Sum_probs=73.4
Q ss_pred EEEEcC-ChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 76 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 76 vGIIGl-G~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
|+|||. |.+|..+|..|+ ..| .++..||...... +........ ..... .........++++.+++||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l-~~~~~dl~~-~~~~~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKL-KGVAMDLQD-AVEPL-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccc-hHHHHHHHH-hhhhc-cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999874 445 6899999876432 211111111 11111 12233345677888999999999
Q ss_pred ccCCCc---ccc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCcceEE-eeCCC
Q 022672 151 HPVLDK---TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG-LDVFE 208 (294)
Q Consensus 151 ~~Plt~---~t~--------~li~--~~~l~~mk~gailIN~aRG~~vd~~--aL~~a--L~~g~i~ga~-lDV~~ 208 (294)
+.-... .++ .++. .+.+....|++++||++ ..+|.- .+.+. +...++.|.+ +|...
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~r 150 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPIR 150 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence 652110 011 1110 12233445899999995 444433 34444 3566788888 77543
No 222
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.29 E-value=0.0022 Score=58.81 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=50.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCch--hHHHHHHhhhhhhhhhcCCC-C---ccccccCCHHHHh
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQ-P---VTWKRASSMDEVL 142 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~ell 142 (294)
.+.+|++.|+|.|.+|++++..| ...|++ |+.++|+.. ...+...+.+ ...... . ..+....++++.+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l----~~~~~~~~~~~~d~~~~~~~~~~~ 197 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKI----KQEVPECIVNVYDLNDTEKLKAEI 197 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHH----hhcCCCceeEEechhhhhHHHhhh
Confidence 46789999999999999999987 478885 999998752 2222222211 111100 0 0111112345566
Q ss_pred hcCCEEEEccCC
Q 022672 143 READVISLHPVL 154 (294)
Q Consensus 143 ~~aDiV~l~~Pl 154 (294)
..+|+|+.+.|.
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 788999999984
No 223
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.26 E-value=0.0015 Score=56.81 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=50.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
-+|.||+|.|||.|.+|...++.| ...|++|+++++..........+ .+ .+.+....-.++.+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~--~i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EG--KIRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CC--CEEEEecCCChhhcCCceEE
Confidence 479999999999999999999987 57899999998765443322211 11 11111111123456789988
Q ss_pred EEccCC
Q 022672 149 SLHPVL 154 (294)
Q Consensus 149 ~l~~Pl 154 (294)
+.+...
T Consensus 75 iaaT~d 80 (202)
T PRK06718 75 IAATND 80 (202)
T ss_pred EEcCCC
Confidence 888763
No 224
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.26 E-value=0.0021 Score=63.17 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=50.6
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
+..+.+++++|+|.|.+|++++..| ...|++|++++++.... +.+.+.+ +.. .....++.+ +.++|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence 3467899999999999999999998 57899999999875432 2221111 000 011122222 578999
Q ss_pred EEEccCCC
Q 022672 148 ISLHPVLD 155 (294)
Q Consensus 148 V~l~~Plt 155 (294)
|+.|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99999954
No 225
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.0013 Score=61.39 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l 150 (294)
.|++|+|+|+|.+|....+. ++++|++|+++|++.++.... ... +.... .....+.++++-+.+|+++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a--~~l-------GAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELA--KKL-------GADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHH--HHh-------CCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 48999999999999998887 589999999999987654211 111 11100 00011223333334888888
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
++| +.+- ...++.++++..++-+
T Consensus 236 tv~--~~~~----~~~l~~l~~~G~~v~v 258 (339)
T COG1064 236 TVG--PATL----EPSLKALRRGGTLVLV 258 (339)
T ss_pred CCC--hhhH----HHHHHHHhcCCEEEEE
Confidence 887 3333 5566777777666655
No 226
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.23 E-value=0.003 Score=49.45 Aligned_cols=107 Identities=24% Similarity=0.329 Sum_probs=62.7
Q ss_pred EEEEEcCChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672 75 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 150 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 150 (294)
++||||+|.+|+...+.+... -+.++. ++|+++... +.+...+ +...+.+++++++ +.|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~------------~~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKY------------GIPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT------------TSEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHh------------cccchhHHHHHHHhhcCCEEEE
Confidence 699999999999998776433 467765 578876542 2222211 1225678999998 7899999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP 198 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~-aRG~~vd~~aL~~aL~~g~ 198 (294)
+.|. ..+.-+-...++.=+ .+++.- ---.+-+...|.++.++.+
T Consensus 69 ~tp~--~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 69 ATPP--SSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESSG--GGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred ecCC--cchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 9993 333223233333211 445442 1112334444555554433
No 227
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.21 E-value=0.0026 Score=61.60 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=72.0
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCC----------chhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS 136 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
+.++.|+||.|.|+|++|+.+|+.| ..+|++|++. |.+ ... +.+..+.....+.... ...+.. ..
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~~-L~~~k~~~~~~l~~~~-~~~~~~-~i 302 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLEK-LKEIKEVRRGRISEYA-EEFGAE-YL 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHhcCCchhhhh-hhcCCe-ec
Confidence 3579999999999999999999998 6899999987 621 111 1111100000000000 000001 11
Q ss_pred CHHHHh-hcCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 137 SMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 137 ~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
+.++++ .+||+++-|.. .+.|+.+....++ .=.+++-.+.+.+ +.+-.+.|.++.|.
T Consensus 303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~ 362 (445)
T PRK09414 303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL 362 (445)
T ss_pred CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence 333444 37999998875 6667777666663 2346777888887 33345667666553
No 228
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0013 Score=62.51 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=65.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|.|||.|.||+.+|..|++.-..+|+.-|++..+.. +........+. ...++......+.+++++.|+|+.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~-~i~~~~~~~v~---~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCA-RIAELIGGKVE---ALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHH-HHHhhccccce---eEEecccChHHHHHHHhcCCEEEEeCC
Confidence 57999999999999999986433389999999865432 21111100000 011222234568899999999999999
Q ss_pred CCccccccccHHHH-hcCCCCcEEEEcCCCccc
Q 022672 154 LDKTTYHLINKERL-ATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 154 lt~~t~~li~~~~l-~~mk~gailIN~aRG~~v 185 (294)
.. ++...+ +.++-|.-.++++-...-
T Consensus 78 ~~------~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 78 PF------VDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred ch------hhHHHHHHHHHhCCCEEEcccCCch
Confidence 42 122333 456778888888765544
No 229
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.16 E-value=0.022 Score=51.27 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=72.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCc-----hh----HHHHH---HhhhhhhhhhcCCCCc-cccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ-----AT----RLEKF---VTAYGQFLKANGEQPV-TWKR 134 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~-----~~----~~~~~---~~~~~~~~~~~~~~~~-~~~~ 134 (294)
.++.|+||.|-|+|++|+.+|+.| ...|++|++. |.+. .. ....+ .+..+..+... .... +...
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~-~~~~~~a~~ 111 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEY-AKKYGTAKY 111 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHH-hhcCCCCEE
Confidence 478999999999999999999998 6899999854 4211 00 00000 00000000000 0000 0111
Q ss_pred cCCHHHH-hhcCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 135 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 135 ~~~l~el-l~~aDiV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
. +-+++ -.+||+++-|. +.+.|+.+....++ +=.+++-.+-+.+-+ +-.+.|.++.|.
T Consensus 112 ~-~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 112 F-EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred e-CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 1 22333 35799998775 57889998888874 345777788888755 344677776653
No 230
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.15 E-value=0.0021 Score=58.27 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=61.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
.+|||||+|.||+.+++.+.+.-++++.+ +++..... ..... . + .+.....+++++-.+.|+|+.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~--~~~~~----~---~---~~~~~~~d~~~l~~~~DvVve~t 69 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID--AVRRA----L---G---EAVRVVSSVDALPQRPDLVVECA 69 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH--HHhhh----h---c---cCCeeeCCHHHhccCCCEEEECC
Confidence 47999999999999999874333566543 33322211 00000 0 0 01234567888755699999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM 199 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~---~aL~~aL~~g~i 199 (294)
|.. ... +-....++.|.-++-.+-|...|. +.|.++.+++..
T Consensus 70 ~~~--~~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 70 GHA--ALK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred CHH--HHH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 832 221 223334455555555555555443 446666655543
No 231
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.14 E-value=0.001 Score=61.14 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccc--ccCCHHHHhhcCCEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVLREADVIS 149 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~ 149 (294)
.|+.+||+|+|.+|.--.+. +++||++|+++|+...++.+.+. .-+....-.. ..+-.+++...-|.++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kkeea~~--------~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKKEEAIK--------SLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhHHHHHH--------hcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 79999999999999776666 79999999999988654433221 1111111000 1112344555566666
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
-+++.- +.+-+ ...+..||++..+|-+
T Consensus 252 ~~v~~~--a~~~~-~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 252 DTVSNL--AEHAL-EPLLGLLKVNGTLVLV 278 (360)
T ss_pred eeeeec--cccch-HHHHHHhhcCCEEEEE
Confidence 555522 22222 4556667776666654
No 232
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.07 E-value=0.0065 Score=50.75 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=67.8
Q ss_pred CCCEEEEEcC--ChHHHHHHHHHhhcCCCEEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 72 KGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 72 ~gktvGIIGl--G~IG~~vA~~L~~~~g~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
.|+||++||= +++.++++..+ ..||+++....|..-. ....+.+.........+ ..+....++++.++++|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 4889999993 89999999986 6899999998876521 11122211111111111 112344799999999999
Q ss_pred EEEccCC----Ccc-------ccccccHHHHhcCCCCcEEEEcC
Q 022672 148 ISLHPVL----DKT-------TYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 148 V~l~~Pl----t~~-------t~~li~~~~l~~mk~gailIN~a 180 (294)
|..-.-- .+. ....++++.++.+|++++|..+.
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 9665442 100 11457899999999999999984
No 233
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.05 E-value=0.0018 Score=51.38 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=53.0
Q ss_pred EEEEEcC-ChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 75 TVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++||+|. |.+|+.+++.|...-++++.+. ++..... ......+. .............+++ ..++|+|++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG-KRVSEAGP----HLKGEVVLELEPEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC-cCHHHHCc----ccccccccccccCChh--hcCCCEEEEcC
Confidence 4899995 9999999998743347777665 4322111 11000000 0000000000112232 25899999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 153 VLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
|.. .+...+. .....+++|.++|+++
T Consensus 74 ~~~-~~~~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 74 PHG-VSKEIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred CcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence 943 3333322 3345679999999996
No 234
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.03 E-value=0.0037 Score=49.97 Aligned_cols=110 Identities=26% Similarity=0.411 Sum_probs=60.3
Q ss_pred EEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 75 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
+|+|+|+ |+||+.+++.+...-++++. ++|+..+....+ ..+. -.+..+.+.....++++++.++|+++-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~---~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGE---LAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHH---HCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhh---hhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 99999999997545789865 467665221100 0000 01122344455689999999999987665
Q ss_pred CCCcc-ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 153 VLDKT-TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 153 Plt~~-t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+++ +...+ +.. ++.|.-+|-...|---++.+.++.+.+
T Consensus 76 --~p~~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 76 --NPDAVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp ---HHHHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred --ChHHhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 233 22221 222 344666666556654344344444433
No 235
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.99 E-value=0.0022 Score=55.78 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=62.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH------------HHhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|.|+|+|.+|..+|+.|+ ..|+ +++.+|+..-.. ..+ -.+...+.+.... ....+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~ 94 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVT 94 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEE
Confidence 4689999999999999999999984 6787 788888762100 000 0000001111111 111110
Q ss_pred ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
...+++++++++|+|+.|+. +.+++..+++...+..+ -+|..
T Consensus 95 ~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i---p~i~~ 142 (202)
T TIGR02356 95 ALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT---PLISA 142 (202)
T ss_pred EehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC---CEEEE
Confidence 11245678899999998875 56677777766555433 35554
No 236
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.99 E-value=0.0042 Score=55.85 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=63.3
Q ss_pred cCcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 67 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 67 ~g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
.|.+|+..|++|+|+ |.||..+||.|+ +-+.+....-+.......+.. ..+.. +.+.....|++..+.+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l----~~l~e----~~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRL----TLLQE----ELGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhh----hhccc----ccCCCeeeecccccccc
Confidence 478999999999999 999999999985 555443333222111110000 00111 11112234666555566
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 022672 146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 188 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~ 188 (294)
|+++.... -.+-..|+.+. +|||+.+|+-++..=||+.
T Consensus 232 ~i~v~vAs--~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 232 DILVWVAS--MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred ceEEEEee--cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 66544432 23455566654 6899999999887766554
No 237
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.97 E-value=0.0047 Score=55.69 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=45.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+|+|+|+ |.||+.+++.+...-++++.+ +|+...... . . ...+.....+++++++++|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-~--------~-----~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-G--------Q-----GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-c--------c-----CCCCccccCCHHHhccCCCEEEEC
Confidence 47999998 999999999874345788765 776543211 0 0 111223457899999899999977
Q ss_pred cC
Q 022672 152 PV 153 (294)
Q Consensus 152 ~P 153 (294)
+|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 76
No 238
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.96 E-value=0.005 Score=57.89 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=46.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhc----C--CCCccccccCCHHHHhhcCC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKAN----G--EQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~l~ell~~aD 146 (294)
.+|||+|+|.||+.+++.+...-++++.+. |+.+ .....+...++-..... . ....+.....++++++.++|
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 379999999999999998754568888764 5432 21111111010000000 0 00011223356888888999
Q ss_pred EEEEccC
Q 022672 147 VISLHPV 153 (294)
Q Consensus 147 iV~l~~P 153 (294)
+|+.|.|
T Consensus 81 VVIdaT~ 87 (341)
T PRK04207 81 IVVDATP 87 (341)
T ss_pred EEEECCC
Confidence 9999987
No 239
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.91 E-value=0.0009 Score=58.67 Aligned_cols=136 Identities=19% Similarity=0.220 Sum_probs=84.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh---hhcCCCCc-------------cccc
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQPV-------------TWKR 134 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~~~~ 134 (294)
..=+.|+|||.|.||..+|+.. ...|.+|+.+|.+..... +........+ ........ ....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~-~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALS-RATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred ccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHH-HHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4456799999999999999984 689999999998865432 2222221111 11111111 0122
Q ss_pred cCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672 135 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 212 (294)
Q Consensus 135 ~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 212 (294)
..++.++++++|+|+-++-.+-+.+.-+-++.=...|+.++|. |+| .+...++..+++.. -+.++|-.|.+-|.
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~-srf~GlHFfNPvPv 161 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRP-SRFAGLHFFNPVPV 161 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccCh-hhhceeeccCCchh
Confidence 4567777888888887775444444333344445568887765 443 35566777787764 46888988877664
No 240
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.85 E-value=0.0014 Score=53.62 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=69.3
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcC-CCCcccc-ccCCHHHHhhcCCEEEEccC
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV 153 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~aDiV~l~~P 153 (294)
|+|+|.|.||.-+|-+|+ ..|.+|..+++.. . .+.... .+-.+.... ....... ...+..+-....|+|++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~-~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP-R-LEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH-H-HHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHH-HCCCceEEEEccc-c-HHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 689999999999999984 6999999999876 2 222111 010111111 0000000 11112245788999999997
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 203 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~ 203 (294)
. .++...+. .....+.+++.++-.--| +-.++.|.+.+...++.++.
T Consensus 77 a-~~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 77 A-YQLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp G-GGHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred c-cchHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 3 34454443 355666777777766555 44456666666444554443
No 241
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.83 E-value=0.0068 Score=54.39 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=58.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
.++-|+|.|.+++++|+. ++.+|++|+++|+++.... +..+..++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~l-a~~lGf~V~v~D~R~~~~~---------------------------~~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRA-LAPLPCRVTWVDSREAEFP---------------------------EDLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHH-HhcCCCEEEEEeCCccccc---------------------------ccCCCCceEEecCCH
Confidence 589999999999999998 4899999999997653100 000123333322222
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 198 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~ 198 (294)
.+.+..+.+...+|=+.++.-.|.+.|..+|++..
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~ 187 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGD 187 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCC
Confidence 23333455677777788888888888888885433
No 242
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.82 E-value=0.003 Score=59.32 Aligned_cols=93 Identities=22% Similarity=0.240 Sum_probs=59.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--------------------HHHHHHhhhhhhhhhcCC
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKANGE 127 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~~~ 127 (294)
..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|+..-. ..+... +.+....
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~----~~l~~in- 93 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAK----EHLRKIN- 93 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHH----HHHHHHC-
Confidence 4699999999999999999999985 6787 78888875310 000000 1111111
Q ss_pred CCcccc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672 128 QPVTWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 168 (294)
Q Consensus 128 ~~~~~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 168 (294)
..+... ...+++++++++|+|+.+.- +.+++.+++.-..+
T Consensus 94 p~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~~ 139 (338)
T PRK12475 94 SEVEIVPVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQK 139 (338)
T ss_pred CCcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 111111 11357788999999999984 67788777665544
No 243
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.81 E-value=0.0058 Score=59.16 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=69.9
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh------H-HHH--HHhhh----hhhhhhcCCCCccccc
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT------R-LEK--FVTAY----GQFLKANGEQPVTWKR 134 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~------~-~~~--~~~~~----~~~~~~~~~~~~~~~~ 134 (294)
|.+|.|+||.|.|+|++|+..|+.| ..+|++|++....... . .+. +...+ ...+... ....+...
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~-~~~~ga~~ 300 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREY-AEKYGCKY 300 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhh-HhhcCCEE
Confidence 4579999999999999999999998 6899999984331110 0 000 00000 0000000 00001111
Q ss_pred cCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCC-c-EEEEcCCCcccCHHHHHHHHHcCCc
Q 022672 135 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKE-A-ILVNCSRGPVIDEVALVEHLKQNPM 199 (294)
Q Consensus 135 ~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-a-ilIN~aRG~~vd~~aL~~aL~~g~i 199 (294)
.+-++++ ..||+++-|. +.+.|+++....++.. . +++-.+.+ .+..++. +.|.+..|
T Consensus 301 -i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI 360 (444)
T PRK14031 301 -VEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKI 360 (444)
T ss_pred -cCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCc
Confidence 1233432 5799988665 5788988888888653 4 55556666 5555555 44444444
No 244
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.81 E-value=0.0058 Score=56.95 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
+..++|+|||.|.+|..+|..++ ..| .+++.+|..++.......+.... . .............+.+ .+++||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~-~~~~~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-N-VIAGSNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-h-hccCCCeEEEECCCHH-HhCCCCEEE
Confidence 45579999999999999998864 445 48999998776422111111100 0 0011112233335664 579999999
Q ss_pred EccCCCcc----------------cccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE
Q 022672 150 LHPVLDKT----------------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG 203 (294)
Q Consensus 150 l~~Plt~~----------------t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~--~g~i~ga~ 203 (294)
++.-.... +..++. .+.+....|.+++|+++-..-+-...+.+... ..++.|.+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 97632110 111110 11233345777999997433233333433321 23566655
No 245
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.80 E-value=0.0096 Score=54.87 Aligned_cols=76 Identities=14% Similarity=0.330 Sum_probs=45.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.. +...... .........+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la-~~~~~ev~L~D~~~~~~~~~~~dl~-~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLA-LKELGDVVLFDIVEGVPQGKALDIA-EAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEEECCCchhHHHHHHHH-hhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 58999999999999999875 3333 99999986543222111111 0001001 111222234564 479999999986
Q ss_pred C
Q 022672 153 V 153 (294)
Q Consensus 153 P 153 (294)
.
T Consensus 79 ~ 79 (307)
T PRK06223 79 G 79 (307)
T ss_pred C
Confidence 3
No 246
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.014 Score=55.25 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=83.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh--------hhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
++|.|+|.|-+|-..+-.| ..+|.+|+.+|....+.. .... +..+.+.... ..-......+.++.++++
T Consensus 1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV~-~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKVE-LLNKGISPIYEPGLEELLKENL-ASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHHH-HHhCCCCCCcCccHHHHHHhcc-ccCcEEEEcCHHHHHhcC
Confidence 4799999999999999988 489999999998765421 1111 1111111111 111133456888899999
Q ss_pred CEEEEccCCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672 146 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 198 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~ 198 (294)
|++++|+|..+...+-+| ++..+.++..+++|+=|+-.+=-.+.+.+.+.+..
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 999999995554455443 34567777779999999988877777776665543
No 247
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.80 E-value=0.097 Score=47.73 Aligned_cols=188 Identities=21% Similarity=0.203 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC----CC-------E
Q 022672 31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 99 (294)
Q Consensus 31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~----g~-------~ 99 (294)
+|=-+++-+|+.+|- .|..|.+.+|.|+|.|.-|..+|+.|. .. |+ +
T Consensus 4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~ 61 (279)
T cd05312 4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK 61 (279)
T ss_pred HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence 455677777777762 235688999999999999999999874 33 66 7
Q ss_pred EEEEcCCch-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCCccccccccHHHHhcCC-
Q 022672 100 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 171 (294)
Q Consensus 100 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~~~~l~~mk- 171 (294)
++.+|+..- .....+...|.+ .... ....+|.|+++ +.|+++=+- ..-++|+++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~a~----~~~~----~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~ 129 (279)
T cd05312 62 IWLVDSKGLLTKDRKDLTPFKKPFAR----KDEE----KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAK 129 (279)
T ss_pred EEEEcCCCeEeCCCCcchHHHHHHHh----hcCc----ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHh
Confidence 888887621 011122222211 1110 12358999999 889987653 134899999999998
Q ss_pred --CCcEEEEcCCCccc---CHHHHHHHHHcCC-cceEEeeCCCCCCCC-CCCccCCCCeEEccCCCCC-----cHHHHHH
Q 022672 172 --KEAILVNCSRGPVI---DEVALVEHLKQNP-MFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASA-----SKWTREG 239 (294)
Q Consensus 172 --~gailIN~aRG~~v---d~~aL~~aL~~g~-i~ga~lDV~~~EP~~-~~~L~~~~nviiTPHia~~-----t~~~~~~ 239 (294)
+..++.=.|+...- ..++.+++ .+|+ |.+.+.-.-+.|.-- ...--+..|+++-|=++-. ...-.+.
T Consensus 130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~ 208 (279)
T cd05312 130 SNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDE 208 (279)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHH
Confidence 89999999987652 23333333 2354 544443111111100 0123467899999987632 1122355
Q ss_pred HHHHHHHHHHHHHc
Q 022672 240 MATLAALNVLGKIK 253 (294)
Q Consensus 240 ~~~~~~~nl~~~~~ 253 (294)
|...+++-|.++..
T Consensus 209 m~~aAA~aLA~~~~ 222 (279)
T cd05312 209 MFLAAAEALASLVT 222 (279)
T ss_pred HHHHHHHHHHHhCC
Confidence 66666666666543
No 248
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.79 E-value=0.008 Score=58.15 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=49.2
Q ss_pred CEEEEEcCChHHHHHHH--HHh---hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 74 QTVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~--~L~---~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+|+|||.|.+|.+.+- .++ ...|.+|+.||+..... +...... .................++++.++.||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l-~~~~~~~-~~~~~~~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERL-ETVEILA-KKIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHH-HHHHHHH-HHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence 37999999999998554 222 22367999999886532 2111111 11111112223344567889999999999
Q ss_pred EEccC
Q 022672 149 SLHPV 153 (294)
Q Consensus 149 ~l~~P 153 (294)
+.++|
T Consensus 79 i~ai~ 83 (423)
T cd05297 79 INTIQ 83 (423)
T ss_pred EEeeE
Confidence 99998
No 249
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.79 E-value=0.012 Score=54.66 Aligned_cols=109 Identities=13% Similarity=0.014 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCchh------HHHHHHhhhh---hhhhhcCCCC--------ccccccC--CHHHHhhc
Q 022672 84 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEKFVTAYG---QFLKANGEQP--------VTWKRAS--SMDEVLRE 144 (294)
Q Consensus 84 IG~~vA~~L~~~~g~~V~~~d~~~~~------~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~--~l~ell~~ 144 (294)
||..+|..++ ..|++|+.||+++.. ..+....... +.....+... ....... ++.+.+++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence 6888998874 679999999998732 1111111100 0011111110 0111222 26688899
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
||+|+-++|...+.+..+-.+..+.++++++| ++.-+.+....|.+.++
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 99999999999888888878888899999999 44556667777777764
No 250
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.79 E-value=0.0059 Score=48.28 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=64.0
Q ss_pred CEEEEEc----CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 74 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 74 ktvGIIG----lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
|+|+||| -+..|..+.+.| +..|.+|+..++..... .+...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence 6899999 699999999998 57999999998875431 12334578888448899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
+++| .+.+..++ ++. ..+..+.+++..+ ..++++.+.+++..+.
T Consensus 61 v~~~-~~~~~~~v-~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 61 VCVP-PDKVPEIV-DEA-AALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp E-S--HHHHHHHH-HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred EEcC-HHHHHHHH-HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 9999 23444444 232 2235678888877 6677788888776664
No 251
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0024 Score=59.82 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=47.2
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
++||||||-|..|+.++.. +..+|.+|++.|+.+........+. - ....+.....+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~~--------~-i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVADR--------V-IVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhcccc--------e-eecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999988 5899999999998876533221110 0 00011112358899999999943
No 252
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.76 E-value=0.0078 Score=55.78 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=69.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhh------cCCCEE--EEEcCCchhHHHHHHhhhhhh-----hhhcCCCCccccccCC
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNL--IYYDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRASS 137 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~------~~g~~V--~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 137 (294)
-.-++|+|||.|+.|+++|+.++. .|..+| |.++-......+...+-++.. ....-..+.......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 344789999999999999998642 234344 444433222111111211110 0111112223445678
Q ss_pred HHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 138 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 138 l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
+.+.+.+||+++..+| .+-..-+-++.....|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecce
Confidence 9999999999999999 3334435578888999999999988773
No 253
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.73 E-value=0.0083 Score=53.76 Aligned_cols=121 Identities=22% Similarity=0.325 Sum_probs=71.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE--------cCCchhHHHHHHh---hhhhhhhhcCC-CCccccccCC
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQATRLEKFVT---AYGQFLKANGE-QPVTWKRASS 137 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~--------d~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~ 137 (294)
++.|+++.|-|+|.+|+.+|+.| ...|++|++. |+..-. .+.... ..+..+..-.. .+.+... .+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld-~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~ 105 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLD-VEELLRIKEERGSRVDDYPLESPDGAEY-IP 105 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEH-HHHHHHHHHHHSSHSTTGTHTCSSTSEE-EC
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCch-HHHHHHHHHHhCCcccccccccccceeE-ec
Confidence 59999999999999999999998 5789998876 544321 111111 11110000000 0000111 12
Q ss_pred HH-HHh-hcCCEEEEccCCCccccccccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 138 MD-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 138 l~-ell-~~aDiV~l~~Plt~~t~~li~~~~l~-~mk~ga-ilIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
-+ +++ .+||+++.|. ..+.|+.+... .+++++ +++-.+.+.+- .++.. .|++..|.
T Consensus 106 ~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 106 NDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp HHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred cccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 22 555 6899999884 36678888777 777664 55666677765 44443 77777653
No 254
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.69 E-value=0.011 Score=57.67 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=68.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
-+.+++|+|+|+|..|+++|+.| +..|++|.++|............ .+...+ ..+..-....+.+.++|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence 36789999999999999999997 69999999999765322111000 011111 11111122235567899998
Q ss_pred EccCCCcccccc-----------ccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHPVLDKTTYHL-----------INK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~Plt~~t~~l-----------i~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
.. |.-+.+.-. +++ +.+ ...+...+-|--+.|+.--..-|...|+.
T Consensus 83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 87 433322222 221 122 22233345565567887777767777764
No 255
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.69 E-value=0.0095 Score=46.22 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccc
Q 022672 83 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 162 (294)
Q Consensus 83 ~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li 162 (294)
.-+..+++.| +..|++|.+|||.......... +. ..+.....++++.++.+|+|+++.+ -++-+.+-
T Consensus 17 Sp~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~ 83 (106)
T PF03720_consen 17 SPALELIEEL-KERGAEVSVYDPYVDEEEIKEL----------GK-LEGVEVCDDLEEALKGADAVVLATD-HDEFRELD 83 (106)
T ss_dssp -HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH----------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCG
T ss_pred CHHHHHHHHH-HHCCCEEEEECCccChHHHHhh----------CC-ccceEEecCHHHHhcCCCEEEEEec-CHHHhccC
Confidence 3466888887 6889999999998765432110 00 0113345689999999999999998 34444433
Q ss_pred cHHHHhcCCCCcEEEEc
Q 022672 163 NKERLATMKKEAILVNC 179 (294)
Q Consensus 163 ~~~~l~~mk~gailIN~ 179 (294)
-.+....|+++.++|++
T Consensus 84 ~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 84 WEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHHSCSSEEEEES
T ss_pred HHHHHHhcCCCCEEEEC
Confidence 35566778889999987
No 256
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.68 E-value=0.016 Score=53.78 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=67.0
Q ss_pred CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
.+|+|||.|.+|..+|-.|+ ++..-++..+|.+.+.......+-. . ....... .......+.++ +++||+|+++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~-~-~~~~~~~-~~v~~~~dy~~-~~~adivvita 79 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQ-H-GSAFLKN-PKIEADKDYSV-TANSKVVIVTA 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHH-H-hhccCCC-CEEEECCCHHH-hCCCCEEEECC
Confidence 48999999999999998764 2444589999987643222222210 0 0000000 12222356665 79999999865
Q ss_pred CCCc---ccccc-c--cH-------HHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCcceE
Q 022672 153 VLDK---TTYHL-I--NK-------ERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV 202 (294)
Q Consensus 153 Plt~---~t~~l-i--~~-------~~l~~mk~gailIN~aRG~~vd~~a--L~~a--L~~g~i~ga 202 (294)
-... +++-- + |. +.+....|.+++|+++ ..+|.-+ +.+. +...++.|.
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence 4211 22311 1 11 2334457889999997 3344322 2232 334455555
No 257
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.65 E-value=0.009 Score=49.85 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=34.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
-.|.|++|.|||.|.+|...++.| ...|++|.++++...
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~ 47 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEIC 47 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccC
Confidence 479999999999999999999987 589999999976543
No 258
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.64 E-value=0.006 Score=64.79 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=48.0
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCE-------------EEEEcCCchhHHHHHHhhhhhhhhhcCCC--Ccccccc
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRA 135 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 135 (294)
-+.|+|+|||.|.||+..|+.|++.-+.+ |.+.|++.... +.+.+.+ .+.. ...+...
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~lDv~D~ 639 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQLDVSDS 639 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEeecCCH
Confidence 35789999999999999999986544544 78889876442 2222211 0100 1111112
Q ss_pred CCHHHHhhcCCEEEEccCC
Q 022672 136 SSMDEVLREADVISLHPVL 154 (294)
Q Consensus 136 ~~l~ell~~aDiV~l~~Pl 154 (294)
.++.++++++|+|++|+|.
T Consensus 640 e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCCCEEEECCCc
Confidence 2344445789999999994
No 259
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.61 E-value=0.0032 Score=59.92 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=53.1
Q ss_pred EEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
|+|+|.|.+|+.+++.|++.... +|++.|++..... +..+.. ...+. ..........+++++++++|+|+.|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEKLLGDRVE---AVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT--TTTTEE---EEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhhcccccee---EEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 78999999999999998655566 8999999876532 211100 00000 000111122347889999999999998
Q ss_pred CCccccccccHHHH-hcCCCCcEEEEc
Q 022672 154 LDKTTYHLINKERL-ATMKKEAILVNC 179 (294)
Q Consensus 154 lt~~t~~li~~~~l-~~mk~gailIN~ 179 (294)
.. .+...+ ..++.|.-.||+
T Consensus 77 p~------~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 77 PF------FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp GG------GHHHHHHHHHHHT-EEEES
T ss_pred cc------hhHHHHHHHHHhCCCeecc
Confidence 32 222222 334556677774
No 260
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.60 E-value=0.0063 Score=53.26 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=65.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
-.|.||+|.|||-|.+|..=++.| ...|++|+++.+.....+..+.+. +..... ...-..++ +..+++|
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~--------~~i~~~-~~~~~~~~-~~~~~lv 76 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE--------GKIKWI-EREFDAED-LDDAFLV 76 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh--------cCcchh-hcccChhh-hcCceEE
Confidence 479999999999999999999987 589999999998874433332221 111110 11123333 4459999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+.+++.. -+|+..++.+++-.++||+.
T Consensus 77 iaAt~d~-----~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 77 IAATDDE-----ELNERIAKAARERRILVNVV 103 (210)
T ss_pred EEeCCCH-----HHHHHHHHHHHHhCCceecc
Confidence 9998732 26677777777777889873
No 261
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.59 E-value=0.0063 Score=55.65 Aligned_cols=79 Identities=19% Similarity=0.122 Sum_probs=51.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|+++.|||.|.+|++++..| ...|+ +|+.++|+..+. +.+.+.++. ... ...+....++.+.+.++|+|
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~~----~~~-~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGVQ----VGV-ITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhhh----cCc-ceeccchhhhhhcccCCCEE
Confidence 46799999999999999999987 57887 699999886542 222222110 000 00010012344566889999
Q ss_pred EEccCCC
Q 022672 149 SLHPVLD 155 (294)
Q Consensus 149 ~l~~Plt 155 (294)
+.+.|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999853
No 262
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.58 E-value=0.0078 Score=55.41 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=43.3
Q ss_pred EEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
|+|||.|.+|..+|..++ ..|. +|+.+|...........+.. +.... ...........+.++ +++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la-~~~l~eV~L~Di~e~~~~g~~~dl~-~~~~~-~~~~~~I~~t~d~~~-l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA-LKELGDVVLLDIVEGLPQGKALDIS-QAAPI-LGSDTKVTGTNDYED-IAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hCCCcEEEEEeCCCcHHHHHHHHHH-Hhhhh-cCCCeEEEEcCCHHH-hCCCCEEEEecC
Confidence 689999999999998874 3333 99999987643211111110 10101 011112222345554 799999999774
No 263
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.57 E-value=0.0061 Score=58.72 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=63.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
.++|.|||+|.+|.++|+.| +..|.+|.++|++....... . + . ........+.+..++|+++.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~-~---~--------~~~~~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--P-Y---I--------HERYLENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--H-H---H--------hhhhcCCcHHHhcCCCEEEECC
Confidence 36899999999999999997 68999999999765421100 0 0 0 0000123344557899988887
Q ss_pred CCCccccc-----------cccHHHH--hc--CCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672 153 VLDKTTYH-----------LINKERL--AT--MKK-EAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 153 Plt~~t~~-----------li~~~~l--~~--mk~-gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+..+. .. ++....+ .. +.+ -.+=|--+-|+.--..=|...|+.
T Consensus 68 gi~~~-~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 68 GIKKE-HPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCCC-cHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 65432 21 2222111 21 212 234455566777666666677754
No 264
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.55 E-value=0.0095 Score=55.39 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=58.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+++|+|||.|.+|..+|-.| ...|. ++..+|.+.........+-. .-. ... ..... ...+. +.+++||+|+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~Dl~-~~~-~~~-~~~~i-~~~~~-~~~~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMDLS-HAV-PFT-SPTKI-YAGDY-SDCKDADLVV 78 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHHHH-hhc-ccc-CCeEE-EeCCH-HHhCCCCEEE
Confidence 467999999999999999987 45565 89999986543222211110 000 000 11111 22344 4479999998
Q ss_pred EccCCCc---cccc-cc--c----HH---HHhcCCCCcEEEEcC
Q 022672 150 LHPVLDK---TTYH-LI--N----KE---RLATMKKEAILVNCS 180 (294)
Q Consensus 150 l~~Plt~---~t~~-li--~----~~---~l~~mk~gailIN~a 180 (294)
++.-... .++- ++ | ++ .+....|.+++|+++
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 8764311 1221 11 1 11 222234788999987
No 265
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.54 E-value=0.02 Score=55.51 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=72.6
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE--------EcCCchhH-----HHHHHhhhhhhhhhc-CCCCcccc
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQATR-----LEKFVTAYGQFLKAN-GEQPVTWK 133 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~--------~d~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~ 133 (294)
|.++.|+||.|=|+|++|+..|+.| ..+|++|++ ||+.--.. +.+..+..+..+... ...+ +..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~ 300 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GST 300 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCE
Confidence 4579999999999999999999998 689999999 77542211 111111100000000 0000 111
Q ss_pred ccCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 134 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 134 ~~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
.. +-++++ ..||+++-|. +.+.|+.+....+. .=.+++-.+-+ .+..+|- +.|++..|.
T Consensus 301 ~i-~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~ 362 (445)
T PRK14030 301 FF-AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL 362 (445)
T ss_pred Ec-CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence 11 223333 4689887665 67888888777772 23467777788 4555443 666666553
No 266
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.53 E-value=0.12 Score=47.92 Aligned_cols=142 Identities=20% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 89 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA 89 (294)
+.++..+|+|-|.-+....++-- |+=++.+.++ .| .+.|.+|+++|- +++-++++
T Consensus 110 ~~a~~~~vPVINa~~~~~HPtQa--L~Dl~Ti~e~---------------------~g-~l~g~~v~~vGd~~~v~~Sl~ 165 (304)
T TIGR00658 110 ELAKYASVPVINGLTDLFHPCQA--LADLLTIIEH---------------------FG-KLKGVKVVYVGDGNNVCNSLM 165 (304)
T ss_pred HHHHhCCCCEEECCCCCCChHHH--HHHHHHHHHH---------------------hC-CCCCcEEEEEeCCCchHHHHH
Confidence 45666789999986655444322 2222222221 12 378999999997 67888888
Q ss_pred HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc-C-CCc----------c
Q 022672 90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP-V-LDK----------T 157 (294)
Q Consensus 90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~-P-lt~----------~ 157 (294)
..+ ..||++|....|..-...+.+.+..-......+ ..+....++++.++++|+|..-. . ... .
T Consensus 166 ~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~ 241 (304)
T TIGR00658 166 LAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLF 241 (304)
T ss_pred HHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHh
Confidence 876 589999998887542211111111000001111 12334578999999999997742 1 010 0
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 022672 158 TYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 158 t~~li~~~~l~~mk~gailIN~a 180 (294)
....++++.++.+|++++|..+.
T Consensus 242 ~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 242 RPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred cCCcCCHHHHhhcCCCCEEECCC
Confidence 12356778888888888887763
No 267
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.52 E-value=0.0066 Score=53.67 Aligned_cols=106 Identities=25% Similarity=0.224 Sum_probs=63.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|.|+|+|.+|..+|+.|+ ..|+ +++.+|...-.. ..+ + .+...+.+.... ....+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~ 94 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIE 94 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEE
Confidence 4689999999999999999999985 6777 677777543110 000 0 000001111111 111111
Q ss_pred ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
...+++++++++|+|+.|+. +.+++.++++...+ .+.-+|.++
T Consensus 95 ~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 95 AYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred EecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 11345678899999999987 56777777765554 344566664
No 268
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.50 E-value=0.08 Score=47.59 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCC-----------E
Q 022672 31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N 99 (294)
Q Consensus 31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-----------~ 99 (294)
+|=-+++-+|+.+|- .|+.|.+.+|.|+|.|..|-.+|+.|. ..++ +
T Consensus 4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~ 61 (254)
T cd00762 4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR 61 (254)
T ss_pred hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence 455667777777762 235688999999999999999999874 4433 6
Q ss_pred EEEEcCCchh---H--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCCccccccccHHHHhcCC-
Q 022672 100 LIYYDLYQAT---R--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 171 (294)
Q Consensus 100 V~~~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~~~~l~~mk- 171 (294)
++.+|+..-- + ...+...+.+... . .....+|.|+++ +.|+++=.. ..-++|.++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~--~-----~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~ 130 (254)
T cd00762 62 IWXVDRKGLLVKNRKETCPNEYHLARFAN--P-----ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE 130 (254)
T ss_pred EEEECCCCeEeCCCCccCHHHHHHHHHcC--c-----ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence 8888876210 0 1111111000000 0 012358999999 999987643 235899999999998
Q ss_pred --CCcEEEEcCCCccc---CHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCc-----HHHHHHH
Q 022672 172 --KEAILVNCSRGPVI---DEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS-----KWTREGM 240 (294)
Q Consensus 172 --~gailIN~aRG~~v---d~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t-----~~~~~~~ 240 (294)
+..++.=.|+...- ..++.+++=+-..|.+.+.-.+.++-.-. ...-+..|+++-|=++-.. ....+.|
T Consensus 131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m 210 (254)
T cd00762 131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDV 210 (254)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHH
Confidence 89999999987762 33333333222234444432222211000 1234678999999876321 1122455
Q ss_pred HHHHHHHHHHHH
Q 022672 241 ATLAALNVLGKI 252 (294)
Q Consensus 241 ~~~~~~nl~~~~ 252 (294)
...+++-|.++.
T Consensus 211 ~~aAA~aLA~~v 222 (254)
T cd00762 211 FLSAAEAIASSV 222 (254)
T ss_pred HHHHHHHHHhhC
Confidence 555666666554
No 269
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.49 E-value=0.065 Score=50.18 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=82.4
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY 88 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v 88 (294)
+.++..+|+|.|.-+....++- +|+=++.+.++ | | .+.|+||++||-+ ++.+++
T Consensus 117 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~---------------~------g-~l~g~~va~vGd~~~~v~~Sl 172 (331)
T PRK02102 117 ELAKYSGVPVWNGLTDEWHPTQ--MLADFMTMKEH---------------F------G-PLKGLKLAYVGDGRNNMANSL 172 (331)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH---------------h------C-CCCCCEEEEECCCcccHHHHH
Confidence 4556678999998665433322 22222222211 1 1 3789999999997 788888
Q ss_pred HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC--Cc-----c----
Q 022672 89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--DK-----T---- 157 (294)
Q Consensus 89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl--t~-----~---- 157 (294)
+..+ ..||++|....|..-...+.+.+..-......+ ..+....++++.++++|+|..-+=. .. +
T Consensus 173 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~ 248 (331)
T PRK02102 173 MVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKL 248 (331)
T ss_pred HHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHh
Confidence 8876 589999998877542211121111000011111 1233457899999999999774310 00 0
Q ss_pred -ccccccHHHHh-cCCCCcEEEEcC
Q 022672 158 -TYHLINKERLA-TMKKEAILVNCS 180 (294)
Q Consensus 158 -t~~li~~~~l~-~mk~gailIN~a 180 (294)
...-++++.++ .+|++++|..+.
T Consensus 249 ~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 249 LKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred ccCCcCCHHHHhhhcCCCCEEECCC
Confidence 12335677777 478888887763
No 270
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.46 E-value=0.03 Score=51.37 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=49.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch--hHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHh
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVL 142 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell 142 (294)
..+.||++.|+|.|..+++++-.|+ ..|+ +|++++|+.. ...+.+.+.+.. ........... ..+++.+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~~----~~~~~~~~~~~~~~~~l~~~~ 194 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEAL 194 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhhh----ccCceEEEechhhhhhhhhhc
Confidence 4578999999999999999998764 5676 7999999753 222333222111 00000111111 1133456
Q ss_pred hcCCEEEEccCC
Q 022672 143 READVISLHPVL 154 (294)
Q Consensus 143 ~~aDiV~l~~Pl 154 (294)
.++|+|+.+.|.
T Consensus 195 ~~aDivINaTp~ 206 (288)
T PRK12749 195 ASADILTNGTKV 206 (288)
T ss_pred ccCCEEEECCCC
Confidence 689999999984
No 271
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.46 E-value=0.013 Score=54.02 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=71.6
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|+|+|.|.||.-+|-+| ...|.+|..+++.... .+.+...-+-.+...+. ...+.....-.+.....|+|++++-
T Consensus 3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~-~~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQ-ASLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCc-ceeeccCCCCcccccccCEEEEECC
Confidence 4799999999999999998 4678999999886422 22211100000111111 0111100111123467899999987
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 204 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l 204 (294)
.. ++...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus 80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 33 333333 4455667788887766544 345566777776556655443
No 272
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.45 E-value=0.1 Score=48.90 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=83.5
Q ss_pred HHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHH
Q 022672 10 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSA 87 (294)
Q Consensus 10 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~ 87 (294)
.+.++..+|+|-|.-+....++- +|+=++.+.++ .|..+.|++|++||=+ ++.++
T Consensus 116 ~~~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~---------------------~g~~l~gl~ia~vGD~~~~v~~S 172 (334)
T PRK01713 116 NELAEYAGVPVFNGLTDEFHPTQ--MLADVLTMIEN---------------------CDKPLSEISYVYIGDARNNMGNS 172 (334)
T ss_pred HHHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH---------------------cCCCcCCcEEEEECCCccCHHHH
Confidence 34566778999998665433321 12222222211 1224789999999986 57888
Q ss_pred HHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCcc------
Q 022672 88 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKT------ 157 (294)
Q Consensus 88 vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~~------ 157 (294)
++..+ ..+|++|....|..-...+.+.+.........+ ..+....++++.++++|+|..-. ....+
T Consensus 173 l~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~ 248 (334)
T PRK01713 173 LLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERI 248 (334)
T ss_pred HHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHH
Confidence 88776 579999999887532111111100000001111 12344579999999999997632 10000
Q ss_pred ---ccccccHHHHhcC-CCCcEEEEcC
Q 022672 158 ---TYHLINKERLATM-KKEAILVNCS 180 (294)
Q Consensus 158 ---t~~li~~~~l~~m-k~gailIN~a 180 (294)
....++++.++.. |++++|..+.
T Consensus 249 ~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 249 KLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred HhccCCcCCHHHHhccCCCCCEEECCC
Confidence 1233677888875 7889998874
No 273
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.40 E-value=0.0067 Score=49.66 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=47.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+|+|||. |.+|+.+|-.|.. ++.-++..+|...........+- ...... . ...........+.+++||+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl-~~~~~~-~--~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDL-SHASAP-L--PSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH-HHHHHG-S--TEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhh-hhhhhh-c--ccccccccccccccccccEEEEe
Confidence 37999999 9999999987643 56678999999865332222111 000000 0 01111223556778999999998
Q ss_pred cC
Q 022672 152 PV 153 (294)
Q Consensus 152 ~P 153 (294)
.-
T Consensus 77 ag 78 (141)
T PF00056_consen 77 AG 78 (141)
T ss_dssp TS
T ss_pred cc
Confidence 84
No 274
>PRK11579 putative oxidoreductase; Provisional
Probab=96.38 E-value=0.034 Score=52.15 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=43.8
Q ss_pred CEEEEEcCChHHHH-HHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672 74 QTVGVIGAGRIGSA-YARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 149 (294)
Q Consensus 74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~ 149 (294)
.+|||||+|.||+. .+..+.+.-++++.+ +|+...... ..+ . +...+.+++++++ +.|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK----ADW-------P----TVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH----hhC-------C----CCceeCCHHHHhcCCCCCEEE
Confidence 37999999999984 556553334788764 677643211 100 0 1123579999996 579999
Q ss_pred EccCC
Q 022672 150 LHPVL 154 (294)
Q Consensus 150 l~~Pl 154 (294)
+|+|.
T Consensus 70 I~tp~ 74 (346)
T PRK11579 70 IPTPN 74 (346)
T ss_pred EcCCc
Confidence 99994
No 275
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.38 E-value=0.042 Score=53.32 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=68.6
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCc---------hhHHHHHHh---hhhhhhhhcCCCCccccc
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVT---AYGQFLKANGEQPVTWKR 134 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 134 (294)
+.++.|+||.|=|+|++|+..|+.| ..+|++|+ +.|.+. ...+....+ .....+..-.....+...
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~ 310 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY 310 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence 4579999999999999999999998 68999998 445440 111100000 000000000000001111
Q ss_pred cCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 135 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAI-LVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 135 ~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~m-k~gai-lIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
. +-++++ -.||+.+-|. +.+.|+.+..+.+ +.++. ++--+-+.+-. + -.+.|++..|.
T Consensus 311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~ 371 (454)
T PTZ00079 311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI 371 (454)
T ss_pred e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE
Confidence 1 112222 4789888775 6788888777655 44544 45556666544 3 34566665553
No 276
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0092 Score=52.76 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=47.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~ 152 (294)
+++.|+|+|.+|+.+|+.| ...|++|+..|.......+...+.+... ..... ......|+++ +.++|+++.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~----~v~gd-~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTH----VVIGD-ATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceE----EEEec-CCCHHHHHhcCCCcCCEEEEee
Confidence 5799999999999999998 6899999999987654322111101000 00000 0111235555 68899999998
Q ss_pred CC
Q 022672 153 VL 154 (294)
Q Consensus 153 Pl 154 (294)
..
T Consensus 75 ~~ 76 (225)
T COG0569 75 GN 76 (225)
T ss_pred CC
Confidence 73
No 277
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.041 Score=53.27 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=70.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.+|++.|+|.|.+|.++|+.| ...|++|+++|+..........+. +...+ .........++....+|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELG---IELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcC---CEEEeCCcchhHhhcCCEEE
Confidence 36789999999999999999998 589999999998753322221111 11111 11112223345677899998
Q ss_pred EccCCCcccccc----------cc-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHPVLDKTTYHL----------IN-KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~Plt~~t~~l----------i~-~~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
.+.-..+....+ +. .+.+.. .+...+-|--+.|+.--..-|...|+.
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 876543332211 11 112222 232344454567887777777777754
No 278
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.31 E-value=0.039 Score=51.78 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|++|++||= .++.++++..+ ..+|++|....|..-...+.+.+.........+ ..+....++++.++++|+|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~eav~~aDvv 226 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSG---GSVLVTDDVDEAVKDADFV 226 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhcC---CeEEEEcCHHHHhCCCCEE
Confidence 588999999998 57888888776 579999999887532111111110000001111 1233457999999999999
Q ss_pred EEcc-----CCCc---c------ccccccHHHHhcCCCCcEEEEc
Q 022672 149 SLHP-----VLDK---T------TYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 149 ~l~~-----Plt~---~------t~~li~~~~l~~mk~gailIN~ 179 (294)
..-. .... + -...++++.++.+|++++|..+
T Consensus 227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp 271 (338)
T PRK02255 227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC 271 (338)
T ss_pred EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence 8732 1100 0 0134566666667777666665
No 279
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.28 E-value=0.044 Score=50.65 Aligned_cols=103 Identities=23% Similarity=0.330 Sum_probs=66.4
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 70 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
.+.|++|+++|-| ++.++++..+ ..||++|....|..-...+.+.+. +...+ ..+....++++.++++|
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAKG---IKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHcC---CEEEEECCHHHHhCCCC
Confidence 4889999999995 9999999986 589999999887542111222111 11111 22334578999999999
Q ss_pred EEEEccCCCc------c-----ccccccHHHHhcCCCCcEEEEcC
Q 022672 147 VISLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 147 iV~l~~Plt~------~-----t~~li~~~~l~~mk~gailIN~a 180 (294)
+|..----.+ + ...-++++.++.++++++|..+.
T Consensus 219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 9976321000 0 02235667777778888777663
No 280
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.24 E-value=0.017 Score=58.10 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=44.7
Q ss_pred CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccC-cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEc
Q 022672 27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD 104 (294)
Q Consensus 27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d 104 (294)
.....||-++-|=|-+.| |.-....+ ..|.+.+|.|||.|.+|..+|+.| .+.|+ +++.+|
T Consensus 307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence 456677877776665554 43221111 468999999999999999999998 47887 577777
Q ss_pred C
Q 022672 105 L 105 (294)
Q Consensus 105 ~ 105 (294)
.
T Consensus 370 ~ 370 (664)
T TIGR01381 370 N 370 (664)
T ss_pred C
Confidence 4
No 281
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.22 E-value=0.12 Score=48.98 Aligned_cols=106 Identities=22% Similarity=0.289 Sum_probs=63.4
Q ss_pred ccCCCEEEEEcCC--------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672 70 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 141 (294)
Q Consensus 70 ~l~gktvGIIGlG--------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 141 (294)
.|.|+||+|+|.| ++.++++..+ ..||++|....|..-...+...+.....+...+ ..+....++++.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 3789999999853 4456777765 579999999887532111111111000011112 223345799999
Q ss_pred hhcCCEEEEcc----C----------CCcc-----------------ccccccHHHHhcCC-CCcEEEEc
Q 022672 142 LREADVISLHP----V----------LDKT-----------------TYHLINKERLATMK-KEAILVNC 179 (294)
Q Consensus 142 l~~aDiV~l~~----P----------lt~~-----------------t~~li~~~~l~~mk-~gailIN~ 179 (294)
++++|+|..-. . ..+. ....++++.++.+| ++++|..+
T Consensus 243 ~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc 312 (357)
T TIGR03316 243 FKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHC 312 (357)
T ss_pred hCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECC
Confidence 99999997653 1 0000 12236777777777 77888777
No 282
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.21 E-value=0.02 Score=52.97 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=46.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
++|+|||.|.+|..+|..|+ ..| .++..+|+..........+..... ... .+... ...+. +.+++||+|+++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i-~~~d~-~~l~~aDiViit 74 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRI-YAGDY-ADCKGADVVVIT 74 (308)
T ss_pred CEEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEE-eeCCH-HHhCCCCEEEEc
Confidence 37999999999999999874 556 589999987643221111110000 000 01111 12345 458999999999
Q ss_pred cCC
Q 022672 152 PVL 154 (294)
Q Consensus 152 ~Pl 154 (294)
.+.
T Consensus 75 a~~ 77 (308)
T cd05292 75 AGA 77 (308)
T ss_pred cCC
Confidence 985
No 283
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.21 E-value=0.19 Score=46.57 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=83.1
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 89 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA 89 (294)
+.++..+++|-|+-+....++- +++=++.+.++ .| .+.|++|+++|- +++.++++
T Consensus 114 ~~a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~---------------------~g-~l~gl~i~~vGd~~~v~~Sl~ 169 (304)
T PRK00779 114 ELAEYSTVPVINGLTDLSHPCQ--ILADLLTIYEH---------------------RG-SLKGLKVAWVGDGNNVANSLL 169 (304)
T ss_pred HHHHhCCCCEEeCCCCCCChHH--HHHHHHHHHHH---------------------hC-CcCCcEEEEEeCCCccHHHHH
Confidence 4456678999999765544432 22222222221 12 378899999998 78889998
Q ss_pred HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCc---c-----
Q 022672 90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDK---T----- 157 (294)
Q Consensus 90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~---~----- 157 (294)
..+ ..+|++|....|..-...+...+. .....+ ..+....++++.++++|+|..-. .... +
T Consensus 170 ~~l-~~~g~~v~~~~P~~~~~~~~~~~~---~~~~~g---~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~ 242 (304)
T PRK00779 170 LAA-ALLGFDLRVATPKGYEPDPEIVEK---IAKETG---ASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAF 242 (304)
T ss_pred HHH-HHcCCEEEEECCcccCCCHHHHHH---HHHHcC---CeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHh
Confidence 886 589999999887542211111111 011111 12334579999999999997642 1100 0
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 022672 158 TYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 158 t~~li~~~~l~~mk~gailIN~a 180 (294)
...-++++.++.+|++++|..+.
T Consensus 243 ~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 243 APYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred cccCCCHHHHHhcCCCeEEecCC
Confidence 12335677777777777777663
No 284
>PRK12862 malic enzyme; Reviewed
Probab=96.19 E-value=0.24 Score=51.47 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=106.6
Q ss_pred CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672 16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 95 (294)
Q Consensus 16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~ 95 (294)
.+|+|.|. +. +-+|=-+++-+++.+|- .|+.+.+.+|.|.|.|.-|-.+|+.| ..
T Consensus 160 ~~ip~f~D-D~--~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 214 (763)
T PRK12862 160 MKIPVFHD-DQ--HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS 214 (763)
T ss_pred CCCceEec-Cc--ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence 35788887 33 33455667777777762 24578899999999999999999998 46
Q ss_pred CCC---EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672 96 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 166 (294)
Q Consensus 96 ~g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~ 166 (294)
.|. +++.+|+..- .+ .......| ... ....+|+|+++.+|+++=+- +-+.++++.
T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~----a~~-------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~ 278 (763)
T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARY----AQK-------TDARTLAEVIEGADVFLGLS-----AAGVLKPEM 278 (763)
T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHH----hhh-------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 787 7899995521 00 11111111 111 01258999999999887543 258999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672 167 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 230 (294)
Q Consensus 167 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia 230 (294)
++.|.+..++.=.|....--..+....-..|.|.+.+- ...| -+..|+++-|-++
T Consensus 279 v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p------~Q~NN~~~FPgi~ 333 (763)
T PRK12862 279 VKKMAPRPLIFALANPTPEILPEEARAVRPDAIIATGR---SDYP------NQVNNVLCFPYIF 333 (763)
T ss_pred HHHhccCCEEEeCCCCcccCCHHHHHHhcCCEEEEECC---cCCC------Ccccceeeccchh
Confidence 99999999999999877521222222222234544441 1111 3567899999765
No 285
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.18 E-value=0.019 Score=56.08 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=60.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
-+|+||+|.|||-|.++..=++.| ..+|++|+++.+........+. ..+ .+.+..-.-.++.+..+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~--------~~~--~i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWA--------DAG--MLTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------hCC--CEEEEeCCCChHHhCCCEEE
Confidence 479999999999999998877777 5799999999887654433221 111 11121111123557889988
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+.++...+ +|++.....+...+++|++
T Consensus 77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 77 IAATDDDA-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence 88876322 4455555555545566653
No 286
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.18 E-value=0.028 Score=50.98 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=45.4
Q ss_pred CEEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+|+|+| +|.||+.+++.+...-++++.+ +|+........ ..+. + .+..+.+.....+++++...+|+|+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~---~~~~-~--~~~~~~gv~~~~d~~~l~~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT---DAGE-L--AGIGKVGVPVTDDLEAVETDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC---CHHH-h--cCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence 3799999 6999999999875456888765 67432211000 0000 0 011112233457888886679999999
Q ss_pred cC
Q 022672 152 PV 153 (294)
Q Consensus 152 ~P 153 (294)
.|
T Consensus 76 T~ 77 (266)
T TIGR00036 76 TT 77 (266)
T ss_pred CC
Confidence 86
No 287
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.17 E-value=0.11 Score=48.68 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=81.4
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY 88 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v 88 (294)
+.++..+|+|-|.-+....++- +|+=++.+.++ +.+..+.|++|++||-+ ++.+++
T Consensus 116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~--------------------~g~~~l~g~~ia~vGD~~~~v~~Sl 173 (336)
T PRK03515 116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH--------------------LPGKAFNEMTLAYAGDARNNMGNSL 173 (336)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH--------------------hCCCCcCCCEEEEeCCCcCcHHHHH
Confidence 4556678999998654433332 22222222221 00124789999999976 688999
Q ss_pred HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC--CC-----------
Q 022672 89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV--LD----------- 155 (294)
Q Consensus 89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P--lt----------- 155 (294)
+..+ ..||+++....|..-...+.+.+..-......+ ..+....++++.++++|+|..-.= ..
T Consensus 174 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~ 249 (336)
T PRK03515 174 LEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIA 249 (336)
T ss_pred HHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHH
Confidence 8876 589999998877532111111111000011111 223445789999999999977420 00
Q ss_pred ccccccccHHHHhcC-CCCcEEEEc
Q 022672 156 KTTYHLINKERLATM-KKEAILVNC 179 (294)
Q Consensus 156 ~~t~~li~~~~l~~m-k~gailIN~ 179 (294)
......++++.++.. |++++|..+
T Consensus 250 ~~~~y~v~~~lm~~a~k~~~ivmHc 274 (336)
T PRK03515 250 LLRPYQVNSKMMQLTGNPQVKFLHC 274 (336)
T ss_pred hccCCccCHHHHhcccCCCCEEECC
Confidence 001233566677663 677777776
No 288
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.15 E-value=0.024 Score=55.03 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=76.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
..+|+|.|+|+|.-|.++|+.| ...|++|+++|.++......... ... ..+....-....+.+.++|+|+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~~~---~~i~~~~g~~~~~~~~~~d~vV~ 75 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----LLL---EGIEVELGSHDDEDLAEFDLVVK 75 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----hhc---cCceeecCccchhccccCCEEEE
Confidence 4499999999999999999998 68999999999766541000000 000 01111100111266788999988
Q ss_pred ccCCCcccc----------ccccH-HHHhcC-CCC-cEEEEcCCCcccCHHHHHHHHHc--------CCcceEEeeCCCC
Q 022672 151 HPVLDKTTY----------HLINK-ERLATM-KKE-AILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED 209 (294)
Q Consensus 151 ~~Plt~~t~----------~li~~-~~l~~m-k~g-ailIN~aRG~~vd~~aL~~aL~~--------g~i~ga~lDV~~~ 209 (294)
..--...+. .++.+ +.+-+. .+- .+-|--+.|+.-.+.-+...|++ |.|+..++|+.++
T Consensus 76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 754333222 12221 233332 122 44444456776666555555543 4577788999887
Q ss_pred CC
Q 022672 210 EP 211 (294)
Q Consensus 210 EP 211 (294)
++
T Consensus 156 ~~ 157 (448)
T COG0771 156 AE 157 (448)
T ss_pred cC
Confidence 44
No 289
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.15 E-value=0.0084 Score=56.90 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=31.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
.++|||||-|..|+.+++.+ +.+|++|+++|+.+..
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 47899999999999999984 7899999999987644
No 290
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.13 E-value=0.0093 Score=51.71 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=43.8
Q ss_pred EEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 75 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
+++|||- |.+|+.+++.+ +..|+.|+ +++||+|++|+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP 40 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP 40 (197)
T ss_pred EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence 7999998 99999999997 67787763 257999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
- ..+. +.++.+. .++++++.-+
T Consensus 41 v-~~~~-----~~i~~~~--~~v~Dv~SvK 62 (197)
T PRK06444 41 I-DAAL-----NYIESYD--NNFVEISSVK 62 (197)
T ss_pred H-HHHH-----HHHHHhC--CeEEeccccC
Confidence 3 2333 3333333 3788987544
No 291
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.11 E-value=0.11 Score=49.63 Aligned_cols=195 Identities=18% Similarity=0.128 Sum_probs=112.9
Q ss_pred CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672 16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 95 (294)
Q Consensus 16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~ 95 (294)
..|+|.|.-- .-+|=.+++-+|+.+|- .|+.|+..+|.+.|.|.-|-.+++.| .+
T Consensus 166 ~~IPvFhDDq---qGTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~~ 220 (432)
T COG0281 166 MNIPVFHDDQ---QGTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-VA 220 (432)
T ss_pred CCCCcccccc---cHHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-HH
Confidence 3455555422 23566677777777762 35679999999999999999999997 67
Q ss_pred CCC---EEEEEcCCchhHHHHHHh-hhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672 96 FKM---NLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 171 (294)
Q Consensus 96 ~g~---~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk 171 (294)
.|+ +|+.+|+..--.... .+ ..+++.........+ .... ++.+..+|+++-+-- .+.+.++.++.|.
T Consensus 221 ~g~~~~~i~~~D~~G~l~~~r-~~~~~~~~k~~~a~~~~~--~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma 291 (432)
T COG0281 221 AGVKEENIFVVDRKGLLYDGR-EDLTMNQKKYAKAIEDTG--ERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMA 291 (432)
T ss_pred hCCCcccEEEEecCCcccCCC-cccccchHHHHHHHhhhc--cccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhc
Confidence 887 689999763210000 00 000000000000000 0011 447889998876642 3999999999999
Q ss_pred CCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCc-----HHHHHHHHHHHH
Q 022672 172 KEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS-----KWTREGMATLAA 245 (294)
Q Consensus 172 ~gailIN~aRG~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t-----~~~~~~~~~~~~ 245 (294)
++.++.=.|....--....+.+-..| .|.+- .-|. .|- +..|+++-|.|.-.. ..-.+.|...++
T Consensus 292 ~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd--~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa 362 (432)
T COG0281 292 KHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSD--YPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAA 362 (432)
T ss_pred cCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCC--Ccc-cccceeEcchhhhhhHhhccccCCHHHHHHHH
Confidence 99999988876642222222222222 23222 2222 122 789999999986321 112244555566
Q ss_pred HHHHHHHc
Q 022672 246 LNVLGKIK 253 (294)
Q Consensus 246 ~nl~~~~~ 253 (294)
+-|..+..
T Consensus 363 ~AiA~~~~ 370 (432)
T COG0281 363 EAIADLAR 370 (432)
T ss_pred HHHHhhcc
Confidence 66666543
No 292
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.10 E-value=0.24 Score=51.27 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=106.4
Q ss_pred CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672 16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 95 (294)
Q Consensus 16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~ 95 (294)
..|+|.|. +. +-+|=-+++-+++.+|- .|+.+.+.+|.|.|.|.-|-.+|+.| ..
T Consensus 152 ~~ip~f~D-D~--~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 206 (752)
T PRK07232 152 MDIPVFHD-DQ--HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-VA 206 (752)
T ss_pred cCCCeecc-cc--chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-HH
Confidence 35777776 32 23455667777777762 24578899999999999999999987 46
Q ss_pred CCC---EEEEEcCCchh---H---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672 96 FKM---NLIYYDLYQAT---R---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 166 (294)
Q Consensus 96 ~g~---~V~~~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~ 166 (294)
.|. +++.+|+..-- + .......+ ... ....+|+|+++.+|+++=+- +.+.++++.
T Consensus 207 ~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~----a~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~ 270 (752)
T PRK07232 207 LGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY----AVD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPEM 270 (752)
T ss_pred cCCCcccEEEEcCCCeecCCCcccccHHHHHH----hcc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 777 78989865210 0 11111111 110 12258999999999876542 258999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672 167 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 230 (294)
Q Consensus 167 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia 230 (294)
++.|.+..++.=.|....--..+.......|.|.+.+ -...| =+..|+++-|-++
T Consensus 271 v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atG---rs~~p------nQ~NN~~~FPgi~ 325 (752)
T PRK07232 271 VKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATG---RSDYP------NQVNNVLCFPYIF 325 (752)
T ss_pred HHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEEC---CcCCC------Ccccceeecchhh
Confidence 9999999999999988763222222222333454444 11112 3567888888765
No 293
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.09 E-value=0.029 Score=52.84 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=54.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcC-CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
++|+|+|. |.+|+.+++.|. .. +.++.. ++++.... ..+.+.+. ++. +.....+. ..+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~~-~~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNLE-PIDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCceee-cCCHHHhhcCCCEEEE
Confidence 47999998 999999999984 55 778774 46443211 00000010 000 00011111 1255677678999999
Q ss_pred ccCCCccccccccHHHHhc-CCCCcEEEEcC
Q 022672 151 HPVLDKTTYHLINKERLAT-MKKEAILVNCS 180 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~-mk~gailIN~a 180 (294)
|+|. ... ++.... .+.|..+|+.|
T Consensus 75 alP~-~~s-----~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 75 ALPH-GVS-----AELAPELLAAGVKVIDLS 99 (346)
T ss_pred CCCc-hHH-----HHHHHHHHhCCCEEEeCC
Confidence 9993 222 333322 25688899987
No 294
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.08 E-value=0.026 Score=49.88 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=58.6
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV 147 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi 147 (294)
-.+.|++|.|||-|.++..=++.| ..+|++|+++.|........+.. .+ .+.+.. ..+. +-+..+++
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~--~i~~~~r~~~~-~dl~g~~L 88 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YG--NLKLIKGNYDK-EFIKDKHL 88 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CC--CEEEEeCCCCh-HHhCCCcE
Confidence 467899999999999998877776 57999999999876554333211 11 111111 1122 34578888
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
|+.++.. + -+|+...+..+...+++|+
T Consensus 89 ViaATdD-~----~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 89 IVIATDD-E----KLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred EEECCCC-H----HHHHHHHHHHHHcCCeEEE
Confidence 8888752 2 2445555555544455554
No 295
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.08 E-value=0.065 Score=49.35 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=68.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.|++++|||--.=-..++++| ...|++|+.+.-..... ...+.....+.+++++++|+|++-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~~-----------------~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLDH-----------------GFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecccccc-----------------ccCCceeeccHHHHhccCCEEEEC
Confidence 378999999988888999998 57899887643211100 011223345678899999999999
Q ss_pred cCCCcccc---c-------cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672 152 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 201 (294)
Q Consensus 152 ~Plt~~t~---~-------li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g 201 (294)
+|.+.+.. . -++.+.++.|+++..++ ++.+. .. +-+.+++.++..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence 88654321 1 13578999999998544 34332 22 334555556543
No 296
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.06 E-value=0.024 Score=49.69 Aligned_cols=98 Identities=22% Similarity=0.270 Sum_probs=56.6
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-H----------HHhhhhhhhhhcCCCCcccc-
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K----------FVTAYGQFLKANGEQPVTWK- 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~----------~~~~~~~~~~~~~~~~~~~~- 133 (294)
..|..++|+|||+|.+|..+|+.|+ ..|. ++..+|...-.. .. . -.+...+.+.... ......
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~ 101 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEA 101 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEE
Confidence 3589999999999999999999985 5676 588888662100 00 0 0000001111111 111110
Q ss_pred -----ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672 134 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 169 (294)
Q Consensus 134 -----~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~ 169 (294)
...+++++++++|+|+.|+- +.+++..+++...+.
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEH 141 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHh
Confidence 11235578889999998864 556666666554443
No 297
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.02 E-value=0.15 Score=47.86 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=82.9
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY 88 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v 88 (294)
+.++...|+|-|.-+....++- +|+=++.+.+++ .| .+.|++|++||-+ ++.++.
T Consensus 116 ~~a~~s~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~~--------------------~g-~l~g~kia~vGD~~~~v~~Sl 172 (332)
T PRK04284 116 TLAEYSGVPVWNGLTDEDHPTQ--VLADFLTAKEHL--------------------KK-PYKDIKFTYVGDGRNNVANAL 172 (332)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh--------------------cC-CcCCcEEEEecCCCcchHHHH
Confidence 4556678999998655444432 222223332210 12 3789999999975 788898
Q ss_pred HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC--CCc----------
Q 022672 89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV--LDK---------- 156 (294)
Q Consensus 89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P--lt~---------- 156 (294)
+..+ ..||++|....|..-...+.+.+.........+ ..+....++++.++++|+|..-.= ...
T Consensus 173 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~ 248 (332)
T PRK04284 173 MQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIK 248 (332)
T ss_pred HHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHH
Confidence 8876 589999998887532111111110000001111 123345789999999999977420 000
Q ss_pred -cccccccHHHHhcCC-CCcEEEEcC
Q 022672 157 -TTYHLINKERLATMK-KEAILVNCS 180 (294)
Q Consensus 157 -~t~~li~~~~l~~mk-~gailIN~a 180 (294)
-....++++.++.++ |+++|..+.
T Consensus 249 ~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 249 LLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred hccCCcCCHHHHhhcCCCCcEEECCC
Confidence 012346778888775 588888773
No 298
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.034 Score=53.01 Aligned_cols=107 Identities=20% Similarity=0.318 Sum_probs=68.9
Q ss_pred CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHH-------HHHH---hhhhhhhhhcCCCCccccccCC
Q 022672 68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-------EKFV---TAYGQFLKANGEQPVTWKRASS 137 (294)
Q Consensus 68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
+..+.|+||.|=|+|++|+.+|+.| ...|.+|++.|-+..... +.+. +..++.... .+......
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~-----~ga~~i~~ 275 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEY-----AGAEYITN 275 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhh-----cCceEccc
Confidence 3459999999999999999999997 577999999876654100 0000 000000000 01112222
Q ss_pred HHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672 138 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 187 (294)
Q Consensus 138 l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 187 (294)
++++ .+||+++=| .+.+.|+.+....++-. +++-.+.|.+-.+
T Consensus 276 -~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~e 319 (411)
T COG0334 276 -EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTPE 319 (411)
T ss_pred -cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCHH
Confidence 4444 478887655 46888988888888877 7888888887643
No 299
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.99 E-value=0.017 Score=54.29 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=59.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH-------------HH---HHHhhhhhhhhhcCCCCcc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-------------LE---KFVTAYGQFLKANGEQPVT 131 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~ 131 (294)
..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. .. .-.....+.+.... ..+.
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~ 97 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVR 97 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcE
Confidence 4689999999999999999999985 6787 788888752100 00 00000001111111 1111
Q ss_pred cc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672 132 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 168 (294)
Q Consensus 132 ~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 168 (294)
.. ...+++++++++|+|+.|.- +.+++.++++...+
T Consensus 98 v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 98 VEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred EEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 10 12345678899999988875 56778777766554
No 300
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.98 E-value=0.021 Score=55.26 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=47.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~ 152 (294)
++|.|+|+|.+|+.+|+.| ...|.+|+++|+++... +.+....+.... .+ .......++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~~~~~~~~-~g----d~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQDRLDVRTV-VG----NGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhhcCEEEE-Ee----CCCCHHHHHHcCCCcCCEEEEec
Confidence 4799999999999999998 67899999999876542 221110000000 00 00112345555 78999999999
Q ss_pred CC
Q 022672 153 VL 154 (294)
Q Consensus 153 Pl 154 (294)
+.
T Consensus 74 ~~ 75 (453)
T PRK09496 74 DS 75 (453)
T ss_pred CC
Confidence 84
No 301
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.97 E-value=0.023 Score=49.20 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=32.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 106 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~ 106 (294)
..|.+++|.|+|+|.+|..+++.|+ ..|+ ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 4699999999999999999999985 6777 57888865
No 302
>PLN02527 aspartate carbamoyltransferase
Probab=95.96 E-value=0.075 Score=49.24 Aligned_cols=102 Identities=19% Similarity=0.348 Sum_probs=64.0
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 70 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
.+.|++|++||-+ ++.++++..+ ..+ |++|....|..-.....+.+. +...+ ..+....++++.++++
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTSKG---VEWEESSDLMEVASKC 219 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHHcC---CEEEEEcCHHHHhCCC
Confidence 4889999999976 6889988876 456 999988877432111111111 11111 2234457899999999
Q ss_pred CEEEEccCCCc------c------ccccccHHHHhcCCCCcEEEEc
Q 022672 146 DVISLHPVLDK------T------TYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 146 DiV~l~~Plt~------~------t~~li~~~~l~~mk~gailIN~ 179 (294)
|+|....--.+ + ....++++.++..+++++|..+
T Consensus 220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 99977432100 0 1244566777777777777766
No 303
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.95 E-value=0.019 Score=54.79 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=62.0
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHhhcCCEE
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADVI 148 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDiV 148 (294)
-.-++|+|+|. |.+|+.+.+.|...-.+++..+.+..... ..+...+ .++.. ... ....+++ +.++++|+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~---~~~--~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVF-PHLIT---QDL--PNLVAVKDADFSDVDAV 108 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhC-ccccC---ccc--cceecCCHHHhcCCCEE
Confidence 35568999998 99999999998533377887775533211 0000000 00000 011 1112222 224889999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL 190 (294)
++++|. . ...+....|+.|..+|+.|-.--.+.++.
T Consensus 109 f~Alp~-~-----~s~~i~~~~~~g~~VIDlSs~fRl~~~~~ 144 (381)
T PLN02968 109 FCCLPH-G-----TTQEIIKALPKDLKIVDLSADFRLRDIAE 144 (381)
T ss_pred EEcCCH-H-----HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence 999994 2 23445555667899999986555555433
No 304
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.95 E-value=0.022 Score=56.08 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=66.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.|++|.|+|+|.+|.+.++.| +..|++|+++|..... .+.+ ...+ ..........+.++++|+|+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~l--------~~~g---~~~~~~~~~~~~l~~~D~VV 75 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRPH--------AERG---VATVSTSDAVQQIADYALVV 75 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHH--------HhCC---CEEEcCcchHhHhhcCCEEE
Confidence 35789999999999999999886 7899999999965432 1111 1111 11111112345567899888
Q ss_pred EccCCCcccc----------ccccHHHHh-cC-------CC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHPVLDKTTY----------HLINKERLA-TM-------KK-EAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~Plt~~t~----------~li~~~~l~-~m-------k~-gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
....-.+... .++++-.+. .+ ++ ..+=|--+-|+.--..-+.+.|+.
T Consensus 76 ~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 76 TSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 7764333211 122222221 11 12 234455567887766666677764
No 305
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.94 E-value=0.066 Score=49.85 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=59.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCC
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EAD 146 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD 146 (294)
..|++|.|+|.|.+|...++. ++..|+ +|++.+++.... +. .. ..+....-.....+++++.. ..|
T Consensus 168 ~~g~~VlV~G~G~vG~~aiql-ak~~G~~~Vi~~~~~~~~~-~~-a~-------~lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAA-VKTLGAAEIVCADVSPRSL-SL-AR-------EMGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEEeCCHHHH-HH-HH-------HcCCcEEecCCcccHHHHhccCCCCC
Confidence 358999999999999999987 478998 588888765432 21 11 11111110001123444432 268
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+++-+... +.+ -...++.++++..+|.++.
T Consensus 238 ~vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVSGH-PSS----INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECCCC-HHH----HHHHHHHhhcCCEEEEEcc
Confidence 88887752 221 1456778889988888864
No 306
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.93 E-value=0.039 Score=53.05 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=61.2
Q ss_pred ccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 022672 70 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 139 (294)
Q Consensus 70 ~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 139 (294)
.+.|++|+|+|+ ..-...+++.| ...|++|.+|||........ . .....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence 589999999998 44677889987 68899999999986432110 0 01136888
Q ss_pred HHhhcCCEEEEccCCCccccccccHHHH-hcCCCCcEEEEc
Q 022672 140 EVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNC 179 (294)
Q Consensus 140 ell~~aDiV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~ 179 (294)
+.++++|.|+++.+- ++-+. ++-+.+ ..|+ ..+++++
T Consensus 372 ~~~~~ad~~v~~t~~-~~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTDH-DEFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecCC-HHHhc-cCHHHHHHhcC-CCEEEeC
Confidence 999999999999873 33222 344444 3454 4577774
No 307
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.91 E-value=0.17 Score=47.41 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=83.9
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY 88 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v 88 (294)
+.++..+|+|-|.-+....++- +|+=++.+.++ | .|..+.|++|++||-+ ++.+++
T Consensus 116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~---------------~-----g~~~l~gl~va~vGD~~~~v~~S~ 173 (334)
T PRK12562 116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH---------------L-----PGKAFNEMTLVYAGDARNNMGNSM 173 (334)
T ss_pred HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH---------------h-----CCCCcCCcEEEEECCCCCCHHHHH
Confidence 4566678999998665444432 22222222221 1 0124789999999975 788998
Q ss_pred HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc------CCC--cc---
Q 022672 89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP------VLD--KT--- 157 (294)
Q Consensus 89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~------Plt--~~--- 157 (294)
+..+ ..+|++|....|..-...+.+.+.........+ ..+....++++.++++|+|..-. ... ++
T Consensus 174 ~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~ 249 (334)
T PRK12562 174 LEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIA 249 (334)
T ss_pred HHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHH
Confidence 8876 579999998877532111111111100011111 12334578999999999997653 100 00
Q ss_pred --ccccccHHHHhcC-CCCcEEEEcC
Q 022672 158 --TYHLINKERLATM-KKEAILVNCS 180 (294)
Q Consensus 158 --t~~li~~~~l~~m-k~gailIN~a 180 (294)
-..-++++.++.. |++++|..+.
T Consensus 250 ~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 250 LLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred hccCCcCCHHHHHhhcCCCCEEECCC
Confidence 1233677888775 7888888874
No 308
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.87 E-value=0.034 Score=51.38 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=60.9
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
++|+|||.|.+|+.+|..|+ ..| .++..+|+...... .............. ..... ...+.+ .+++||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~~-~~a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKAE-GEALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchhh-HhHhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence 47999999999999999874 556 48999998765422 21111111000001 11111 123444 47899999999
Q ss_pred cCCCcccccc-----c--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 022672 152 PVLDKTTYHL-----I--N-------KERLATMKKEAILVNCSRGPVIDE 187 (294)
Q Consensus 152 ~Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aRG~~vd~ 187 (294)
.... ...++ + | .+.+....|.+++|+++ ..+|.
T Consensus 76 ag~~-~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~ 122 (306)
T cd05291 76 AGAP-QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV 122 (306)
T ss_pred cCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence 8742 21111 1 1 12334456788999986 44443
No 309
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.86 E-value=0.045 Score=42.51 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=52.1
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcCCEEEEc
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVISLH 151 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDiV~l~ 151 (294)
|-|+|+|.+|+.+++.| +..+.+|++.|..+... +...+ .+ ...-.-...+.+. -++++|.|+++
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~-~~~~~--------~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERV-EELRE--------EG-VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHH-HHHHH--------TT-SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHH-HHHHh--------cc-cccccccchhhhHHhhcCccccCEEEEc
Confidence 56999999999999998 56777999999886542 22111 11 1110111122222 24789999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEE
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILV 177 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailI 177 (294)
.+.. ...+.-...++.+.+...+|
T Consensus 70 ~~~d--~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 70 TDDD--EENLLIALLARELNPDIRII 93 (116)
T ss_dssp SSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred cCCH--HHHHHHHHHHHHHCCCCeEE
Confidence 8833 34433345555555555555
No 310
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.85 E-value=0.056 Score=49.87 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=54.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhh-----cC
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA 145 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-----~a 145 (294)
..++||||.|.||+.....+.+.-++++. .+|+.+......+.. . .++. ...+++++++ +.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~-------~-----~Gi~~~~~~ie~LL~~~~~~dI 71 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARAR-------R-----LGVATSAEGIDGLLAMPEFDDI 71 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHH-------H-----cCCCcccCCHHHHHhCcCCCCC
Confidence 35799999999999977666444467765 466655422111111 1 1122 2367888884 58
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
|+|+.+.|. ..+. +-.....+.|..+|+-+
T Consensus 72 DiVf~AT~a--~~H~---e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 72 DIVFDATSA--GAHV---RHAAKLREAGIRAIDLT 101 (302)
T ss_pred CEEEECCCH--HHHH---HHHHHHHHcCCeEEECC
Confidence 889999983 2221 22223346677777765
No 311
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.82 E-value=0.018 Score=46.86 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=48.9
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 022672 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 155 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt 155 (294)
+-|+|.|.+++++++.+ +.+|++|+++|++++. ++.++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 46899999999999984 7999999999986421 11233322 2221
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 022672 156 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 204 (294)
Q Consensus 156 ~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l 204 (294)
++.. +.+ .+.+++.+| ++++.-.|.+.|.++|++ .....++
T Consensus 46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 1100 111 355666666 888888899888888877 4444443
No 312
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.75 E-value=0.13 Score=48.48 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcC-CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.+|||||. .+|+.-++.+...- ++++.+ +|+..+. .+++.+.+ + ...+.++++++.+.|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------G-----VPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence 57999999 68998888774333 578765 6776543 23333322 1 22457999999999999999
Q ss_pred cCCC-c-cccccccHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcceE
Q 022672 152 PVLD-K-TTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV 202 (294)
Q Consensus 152 ~Plt-~-~t~~li~~~~l~~mk~ga-ilIN~aRG~~vd~~aL~~aL~~g~i~ga 202 (294)
+|.+ + .++. +-..+.|+.|. +|+-- --..-+.++|+++.++..+...
T Consensus 70 ipt~~P~~~H~---e~a~~aL~aGkHVL~EK-Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 70 VRSAIVGGQGS---ALARALLARGIHVLQEH-PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred eCCCCCCccHH---HHHHHHHhCCCeEEEcC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 9842 2 2322 22333445553 33332 1113455667777777666544
No 313
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.74 E-value=0.018 Score=43.84 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=43.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l 150 (294)
.++.|+|+|+.|++++..+....|+.+ .++|..+...- ..-.+...+.+++++.+. .|+.++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G---------------~~i~gipV~~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG---------------KEIGGIPVYGSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT---------------SEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC---------------cEECCEEeeccHHHhhhhhCCCEEEE
Confidence 479999999999999854433445543 34555443210 001122233477877776 999999
Q ss_pred ccCCCccccccc
Q 022672 151 HPVLDKTTYHLI 162 (294)
Q Consensus 151 ~~Plt~~t~~li 162 (294)
++|. +.....+
T Consensus 69 ~VP~-~~a~~~~ 79 (96)
T PF02629_consen 69 TVPA-EAAQEVA 79 (96)
T ss_dssp ES-H-HHHHHHH
T ss_pred EcCH-HHHHHHH
Confidence 9993 3344333
No 314
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.16 Score=46.44 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=50.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
....|+++.|+|.|..+++++..| ...|+ +|++++|+... .+++.+.+.. .+. ........+++.. .++|+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~----~~~-~~~~~~~~~~~~~-~~~dl 193 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGE----LGA-AVEAAALADLEGL-EEADL 193 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----ccc-ccccccccccccc-cccCE
Confidence 356789999999999999999998 57885 79999998754 2333322211 110 0001111222222 26999
Q ss_pred EEEccCCC
Q 022672 148 ISLHPVLD 155 (294)
Q Consensus 148 V~l~~Plt 155 (294)
|+.++|..
T Consensus 194 iINaTp~G 201 (283)
T COG0169 194 LINATPVG 201 (283)
T ss_pred EEECCCCC
Confidence 99999954
No 315
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.70 E-value=0.032 Score=53.01 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=59.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-H-----------HHhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K-----------FVTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~-----------~~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|.|||+|.+|..+++.|+ ..|+ ++..+|...-.. +. . -.+.....+.... ....+.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~ 114 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDIRVN 114 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCCeeE
Confidence 4699999999999999999999985 6776 788888652100 00 0 0000011111111 111111
Q ss_pred ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672 134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 169 (294)
Q Consensus 134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~ 169 (294)
...+++++++++|+|+.|+- +.+++.++++...+.
T Consensus 115 ~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~ 155 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT 155 (370)
T ss_pred EeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 11346678999999988875 577888887665543
No 316
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.70 E-value=0.078 Score=49.83 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=66.0
Q ss_pred EEEEEcCChHHHHHHHHHhhc---------CCCEEEE-EcCCch-----h-HHHHHHhhhhhhhhhcCCCC-c-cccccC
Q 022672 75 TVGVIGAGRIGSAYARMMVEG---------FKMNLIY-YDLYQA-----T-RLEKFVTAYGQFLKANGEQP-V-TWKRAS 136 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~---------~g~~V~~-~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 136 (294)
+|||+|+|.||+.+++.|.+. .+++|.+ +|++.. . ..+...+ +....+... . ......
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~----~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALK----VKEETGKLADYPEGGGEI 79 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHH----HHhccCCcccCccccccC
Confidence 699999999999999987422 2677664 464311 0 0111000 000111000 0 001124
Q ss_pred CHHHHh--hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 022672 137 SMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 199 (294)
Q Consensus 137 ~l~ell--~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g~i 199 (294)
++++++ .+.|+|+.|+|....+...--.-..+.|+.|.-+|-...+.+ ...++|.++.++..+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 788888 468999999985444322222233566677777776544443 345677777766554
No 317
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.69 E-value=0.037 Score=49.54 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=61.6
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH------------HHhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~ 133 (294)
..|..++|+|||+|.+|..+|+.|+ ..|. ++..+|...-.. ..+ ..+...+.+.... ......
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~ 105 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIE 105 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEE
Confidence 4699999999999999999999985 5666 677777542210 000 0000011111111 111111
Q ss_pred ----c--cCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 134 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 134 ----~--~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
. ..+++++++++|+|+.|+- +.+++..+++...+..+ -+|..
T Consensus 106 ~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~i---p~v~~ 153 (245)
T PRK05690 106 TINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKK---PLVSG 153 (245)
T ss_pred EEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCC---EEEEe
Confidence 0 1235678899999999885 56777777766555433 36654
No 318
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.042 Score=53.87 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.+++|.|+|+|..|+++|+.| ...|++|.++|+..... .+..+ ..+ +....-....+.+.++|+|+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~-------~~g---i~~~~~~~~~~~~~~~d~vV 79 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIE-------VTG---VADISTAEASDQLDSFSLVV 79 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHH-------hcC---cEEEeCCCchhHhcCCCEEE
Confidence 57889999999999999999997 68899999999754322 11111 101 11111112234457889887
Q ss_pred EccCCCccc----------cccccHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 022672 150 LHPVLDKTT----------YHLINKERLAT-------M-KK-EAILVNCSRGPVIDEVALVEHLKQN 197 (294)
Q Consensus 150 l~~Plt~~t----------~~li~~~~l~~-------m-k~-gailIN~aRG~~vd~~aL~~aL~~g 197 (294)
...--.+.. ..++.+-.+.. + ++ ..+-|--+-|+.--..-|.+.|+..
T Consensus 80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 764221211 12222222321 1 12 2444555678877777777777653
No 319
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.033 Score=54.88 Aligned_cols=37 Identities=32% Similarity=0.308 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 107 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~ 107 (294)
++.+++|.|+|+|..|.++|+.| ...|.+|.++|...
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~ 40 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTRE 40 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCC
Confidence 35688999999999999999987 68999999999754
No 320
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.68 E-value=0.08 Score=51.19 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=64.1
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 70 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
.+.|++|++||-+ ++.++++..+ ..+ |++|....|..-...+.+.+. +... ...+....++++.++++
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCC
Confidence 4889999999994 8899998876 455 999998877542211222211 1111 12234457999999999
Q ss_pred CEEEEccCCCcc----------ccccccHHHHhc-CCCCcEEEEc
Q 022672 146 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNC 179 (294)
Q Consensus 146 DiV~l~~Plt~~----------t~~li~~~~l~~-mk~gailIN~ 179 (294)
|+|....--.+. ....++++.++. .|++++|..+
T Consensus 310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 999874421110 113356666666 6777776665
No 321
>PRK12861 malic enzyme; Reviewed
Probab=95.67 E-value=0.52 Score=48.86 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=113.9
Q ss_pred CcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC
Q 022672 17 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 96 (294)
Q Consensus 17 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~ 96 (294)
.|++.|. +. +-+|=-+++-+|+.+|- .|+.+.+.+|.|.|.|.-|..+|+.| ...
T Consensus 157 ~ipvf~D-D~--qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHD-DQ--HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeecc-cc--chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 6888887 33 23455677777777762 24578899999999999999999987 567
Q ss_pred CC---EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHH
Q 022672 97 KM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 167 (294)
Q Consensus 97 g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l 167 (294)
|. +++.+|+..- .+ ...+...| ... ....+|.|+++.+|+++=+ . +.+.++++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~----a~~-------~~~~~L~eai~~advliG~-S----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERF----AQE-------TDARTLAEVIGGADVFLGL-S----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHH----Hhh-------cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHH
Confidence 87 7899995421 00 11111111 111 1125899999999987544 2 2589999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeCCCCCCCCCCCccCCCCeEEccCCCCC-----cHHHHHHHH
Q 022672 168 ATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA-----SKWTREGMA 241 (294)
Q Consensus 168 ~~mk~gailIN~aRG~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~-----t~~~~~~~~ 241 (294)
+.|.+..++.=.|....--..+.... ..|+ |.+-+ -...| =+..|+++-|-++-. ...-.+.|.
T Consensus 276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~-~~g~aivaTG---rs~~p------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~ 345 (764)
T PRK12861 276 KAMAARPLILALANPTPEIFPELAHA-TRDDVVIATG---RSDYP------NQVNNVLCFPYIFRGALDVGATTITREME 345 (764)
T ss_pred HHhccCCEEEECCCCCccCCHHHHHh-cCCCEEEEeC---CcCCC------CccceeeecchhhHHHHHcCCccCCHHHH
Confidence 99999999999998775222222222 2334 32221 01111 356899999976521 111224455
Q ss_pred HHHHHHHHHHH
Q 022672 242 TLAALNVLGKI 252 (294)
Q Consensus 242 ~~~~~nl~~~~ 252 (294)
..+++-|..+.
T Consensus 346 ~aAa~alA~~~ 356 (764)
T PRK12861 346 IAAVHAIAGLA 356 (764)
T ss_pred HHHHHHHHhhC
Confidence 45555555544
No 322
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.65 E-value=0.12 Score=47.30 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=49.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.+|++.|+|.|..|++++-.|+ ..|+ +++.++|+..+. +...+.+.. ..+..........++++.+..+|+|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div 198 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence 477899999999999999999874 6787 688999876543 222221110 0000000000111234566789999
Q ss_pred EEccCC
Q 022672 149 SLHPVL 154 (294)
Q Consensus 149 ~l~~Pl 154 (294)
+.+.|.
T Consensus 199 INaTp~ 204 (283)
T PRK14027 199 VNATPM 204 (283)
T ss_pred EEcCCC
Confidence 999984
No 323
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.65 E-value=0.067 Score=52.54 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=69.6
Q ss_pred ccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhh----hhhhcC------CCC
Q 022672 70 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP 129 (294)
Q Consensus 70 ~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~ 129 (294)
.+.|++|+|+|+ ..-...+++.| ...|.+|.+|||........ ..++. +..... ...
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 45778899988 57899999999985331110 00000 000000 000
Q ss_pred ccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672 130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190 (294)
Q Consensus 130 ~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL 190 (294)
-......++++.++++|+|+++..- ++-+.+--++....|++..+++|. |+ +.|.+.+
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEW-DEFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCC-hHhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 0112345677899999999999873 333433223445667766688885 43 4565554
No 324
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.13 Score=49.71 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=67.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-CCEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV 148 (294)
++.||++.|+|.|.+|.++|+.| ...|++|+++|......... .. .+...+ .....-....+++.+ .|+|
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g---~~~~~~~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEG---IKVICGSHPLELLDEDFDLM 72 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcC---CEEEeCCCCHHHhcCcCCEE
Confidence 36789999999999999999998 68999999999754221110 00 011111 111111122344444 8988
Q ss_pred EEccCCCccc----------cccccHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 149 SLHPVLDKTT----------YHLINKE-RLATM-KKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 149 ~l~~Plt~~t----------~~li~~~-~l~~m-k~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+...-..++. ..++.+. ++..+ +...+-|--+.|+.--..-|...|+.
T Consensus 73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 7765222211 1223322 22233 33345565577887777777777764
No 325
>PRK08328 hypothetical protein; Provisional
Probab=95.60 E-value=0.042 Score=48.77 Aligned_cols=106 Identities=24% Similarity=0.289 Sum_probs=60.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HHH---hhhhh---------hhhhcCCCCccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KFV---TAYGQ---------FLKANGEQPVTW 132 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~~---~~~~~---------~~~~~~~~~~~~ 132 (294)
..|.+++|.|+|+|.+|..+|+.|+ ..|+ +++.+|...-.. .. .+. +..+. .+... ...+..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v 100 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKI 100 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEE
Confidence 4689999999999999999999985 6676 577777543110 00 000 00000 01100 011111
Q ss_pred c------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 133 K------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 133 ~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
. ...+++++++++|+|+.|+- +.+++.++++-..+ .+.-+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~~~~---~~ip~i~g~ 150 (231)
T PRK08328 101 ETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDYAHK---KGIPLVHGA 150 (231)
T ss_pred EEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEe
Confidence 1 12346678889999998886 35677777654333 344566654
No 326
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.60 E-value=0.033 Score=52.63 Aligned_cols=97 Identities=25% Similarity=0.180 Sum_probs=57.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH------------HHhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-.. +.+ -.+...+.+.... ..+...
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~v~ 101 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDVKVT 101 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCcEEE
Confidence 4689999999999999999999985 6676 677777553110 000 0000001111111 111111
Q ss_pred c------cCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672 134 R------ASSMDEVLREADVISLHPVLDKTTYHLINKERLA 168 (294)
Q Consensus 134 ~------~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 168 (294)
. ..+..++++++|+|+.|.- +.+++.+++....+
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~ 141 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR 141 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1 1234578899999998885 56677777665544
No 327
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.59 E-value=0.15 Score=47.24 Aligned_cols=93 Identities=23% Similarity=0.328 Sum_probs=61.7
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
.+.|++|++||= +++.++++..+ ..||+++....|..-.. + ... ......++++.++++|
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~-------------~~~--~~~~~~d~~ea~~~aD 215 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-E-------------GMP--EYGVHTDLDEVIEDAD 215 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-c-------------ccc--ceEEECCHHHHhCCCC
Confidence 478999999988 58999999986 68999999887743210 0 000 1234578999999999
Q ss_pred EEEEccCCCcc-------------ccccccHHHHhcCCCCcEEEEc
Q 022672 147 VISLHPVLDKT-------------TYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 147 iV~l~~Plt~~-------------t~~li~~~~l~~mk~gailIN~ 179 (294)
+|....=-.+. -...++++.++.+|++++|..+
T Consensus 216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc 261 (305)
T PRK00856 216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHP 261 (305)
T ss_pred EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence 99764311000 0223566666666677666665
No 328
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.55 E-value=0.086 Score=52.51 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=34.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
..+.+|++.|+|.|.+|++++..| ...|++|+.++++.+
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e 413 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYE 413 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence 357899999999999999999998 578889999998754
No 329
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.54 E-value=0.029 Score=50.09 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=58.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|.|+|+|.+|..+|+.|+ ..|. +++.+|...-.. +.+ + .+...+.+.... ......
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in-p~v~i~ 97 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN-PHIAIN 97 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC-CCcEEE
Confidence 3589999999999999999999985 5665 677777543211 000 0 000001111111 111111
Q ss_pred ----c--cCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672 134 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 169 (294)
Q Consensus 134 ----~--~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~ 169 (294)
. ..+++++++++|+|+.|.- +.+++..+++...+.
T Consensus 98 ~~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 98 PINAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA 138 (240)
T ss_pred EEeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence 1 1235678899999998885 567787787666553
No 330
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.53 E-value=0.058 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.7
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 106 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~ 106 (294)
+|.|+|+|.+|..+++.|+ ..|+ ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 5899999999999999984 6777 68888865
No 331
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.53 E-value=0.055 Score=50.56 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=64.7
Q ss_pred EEEEEcCChHHHHHHHHHhhc-------CCCEEEE-EcCCchhH------HHHHHhhhhhhhhhcCCCCcccccc--CCH
Q 022672 75 TVGVIGAGRIGSAYARMMVEG-------FKMNLIY-YDLYQATR------LEKFVTAYGQFLKANGEQPVTWKRA--SSM 138 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~-------~g~~V~~-~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 138 (294)
+|+|+|+|.+|+.+++.|.+. ++.+|++ .|++.... .+...+ .... + ....... .++
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~----~~~~-g--~l~~~~~~~~~~ 74 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIIS----YKEK-G--RLEEIDYEKIKF 74 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHH----HHhc-C--ccccCCCCcCCH
Confidence 799999999999999987442 6777665 45432100 001000 0000 0 0000011 156
Q ss_pred HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 022672 139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP 198 (294)
Q Consensus 139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~ 198 (294)
++++ .++|+|+=|.|.. ++-.-.-.-..+.|+.|.-+|-...|.+. ....|.+..+++.
T Consensus 75 ~~ll~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 75 DEIFEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred HHHhcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 6664 5689999999842 22111113335667788888888877764 4555666665554
No 332
>PLN02342 ornithine carbamoyltransferase
Probab=95.52 E-value=0.44 Score=44.93 Aligned_cols=139 Identities=15% Similarity=0.136 Sum_probs=82.0
Q ss_pred HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672 11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 89 (294)
Q Consensus 11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA 89 (294)
+.++..+|+|-|.-+....++ .+++=++.+.++ .| .+.|++|++||= .++-++++
T Consensus 156 ~la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~---------------------~G-~l~glkva~vGD~~nva~Sli 211 (348)
T PLN02342 156 DLAEYSSVPVINGLTDYNHPC--QIMADALTIIEH---------------------IG-RLEGTKVVYVGDGNNIVHSWL 211 (348)
T ss_pred HHHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH---------------------hC-CcCCCEEEEECCCchhHHHHH
Confidence 445667899999865543332 122222222221 12 478999999997 35777777
Q ss_pred HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCcc--------
Q 022672 90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKT-------- 157 (294)
Q Consensus 90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~~-------- 157 (294)
..+ ..||++|....|..-...+.+.+. +...+. ..+....++++.++++|+|..-. -..+.
T Consensus 212 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~ 284 (348)
T PLN02342 212 LLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAF 284 (348)
T ss_pred HHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhc
Confidence 765 579999998887542211111111 111111 12334578999999999998752 11010
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 022672 158 TYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 158 t~~li~~~~l~~mk~gailIN~a 180 (294)
....++++.++.+|++++|..+.
T Consensus 285 ~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 285 QGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cCCccCHHHHhccCCCcEEeCCC
Confidence 12456778888888888887773
No 333
>PRK06153 hypothetical protein; Provisional
Probab=95.52 E-value=0.045 Score=52.05 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=61.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--------------HHHH---HHhhhhhhhhhcCCCCcc
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------RLEK---FVTAYGQFLKANGEQPVT 131 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~ 131 (294)
.|++++|+|||+|.+|..++..|+ ..|. +++.+|...-. ...+ -++...+.+.... ..+.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I~ 250 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGIV 250 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeEE
Confidence 689999999999999999999986 5565 78888754110 0000 0000111111111 0110
Q ss_pred c--ccc--CCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 132 W--KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 132 ~--~~~--~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
. ... ..+ +.+.++|+|+.|+. +.+++.++++...+. +.-+|++|-+=
T Consensus 251 ~~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l 301 (393)
T PRK06153 251 PHPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGL 301 (393)
T ss_pred EEeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeecc
Confidence 0 011 122 35688999999987 455677777665543 44577775543
No 334
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.52 E-value=0.032 Score=51.40 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=57.6
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H----Hh---------hhhhhhhhcCCCCccc-----
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F----VT---------AYGQFLKANGEQPVTW----- 132 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~----~~---------~~~~~~~~~~~~~~~~----- 132 (294)
+|.|||.|.+|..+|+.|+ ..|+ +++.+|...-.. +.+ + .+ ...+.+.... ..+..
T Consensus 1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iN-P~v~v~~~~~ 78 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIF-PSIDATGIVL 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHC-CCcEEEEeee
Confidence 5899999999999999984 6777 577777432110 000 0 00 0000111111 11111
Q ss_pred ------------------cccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 133 ------------------KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 133 ------------------~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
.....++++++++|+|+.++. +-+++.+++.-....-| .+|+.+
T Consensus 79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~~k---~~I~aa 140 (307)
T cd01486 79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAKNK---LVINAA 140 (307)
T ss_pred eccccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHhCC---cEEEEE
Confidence 011236789999999999995 77888887665544323 566654
No 335
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.47 E-value=0.046 Score=53.33 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=69.5
Q ss_pred ccCCCEEEEEcCChHHHH-HHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~-vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..++++|.|+|+|..|.+ +|+.| +..|.+|.++|.......+. +...+ +....-.+ .+.+.++|+|
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~g---i~~~~~~~-~~~~~~~d~v 70 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELG---AIIFIGHD-AENIKDADVV 70 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCC---CEEeCCCC-HHHCCCCCEE
Confidence 356789999999999999 79987 68999999999765432221 11111 11111112 3456689998
Q ss_pred EEccCCCcccc----------ccccH-HHHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672 149 SLHPVLDKTTY----------HLINK-ERLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 198 (294)
Q Consensus 149 ~l~~Plt~~t~----------~li~~-~~l~~-mk~-gailIN~aRG~~vd~~aL~~aL~~g~ 198 (294)
+...-..+... .+++. +++.. +++ ..+-|--+.|+.--..=+.+.|+...
T Consensus 71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 77653323211 23433 33333 332 34556556788777776777776543
No 336
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.45 E-value=0.014 Score=49.87 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=46.7
Q ss_pred EEEEEcCChHHHHHHHH-HhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672 75 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 150 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~-L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 150 (294)
++.|||.|++|++++.. ..+..||+++ +||..++.. |. ...++.+...+++++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V--------G~-----~~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV--------GT-----KIGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh--------Cc-----ccCCeeeechHHHHHHHHhcCccEEEE
Confidence 58999999999999964 2246789866 588766531 11 112244455678888887 6777899
Q ss_pred ccCC
Q 022672 151 HPVL 154 (294)
Q Consensus 151 ~~Pl 154 (294)
|+|.
T Consensus 153 tVPa 156 (211)
T COG2344 153 TVPA 156 (211)
T ss_pred EccH
Confidence 9993
No 337
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.43 E-value=0.11 Score=48.70 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=49.4
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
.+.|++|++||= +++..+.+..|+.-+|++|....|..-...+.+.+. +...+ ..+....+++|.++++|
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENAG---HKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHcC---CeEEEEcCHHHHHccCC
Confidence 588999999999 578888887654345999988877532111121111 11111 22344579999999999
Q ss_pred EEEEc
Q 022672 147 VISLH 151 (294)
Q Consensus 147 iV~l~ 151 (294)
+|..-
T Consensus 229 vvyt~ 233 (338)
T PRK08192 229 ILYLT 233 (338)
T ss_pred EEEEc
Confidence 99874
No 338
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.43 E-value=0.058 Score=50.36 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.4
Q ss_pred EEEEEcCChHHHHHHHHHhhcC----CCEEEEEcC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDL 105 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~----g~~V~~~d~ 105 (294)
+|||+|+|+||+.+.|.|. .. +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEec
Confidence 4899999999999999863 33 478776643
No 339
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.083 Score=46.35 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=31.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.+.||++.|.|. |.||+.+++.| ...|++|++.+++..
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA 41 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence 367899999997 99999999998 467999988877543
No 340
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.40 E-value=0.084 Score=48.39 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=43.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 150 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 150 (294)
.++||||.|.||+..+..+.+.-++++.+ +|+.+......+.. ..+ .. ....+.+++++ +.|+|++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~-------~~G---i~-~~~~~~e~ll~~~dIDaV~i 70 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAR-------ELG---VK-TSAEGVDGLLANPDIDIVFD 70 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHH-------HCC---CC-EEECCHHHHhcCCCCCEEEE
Confidence 36999999999998876654444677654 66655432111111 111 11 12357888885 5788999
Q ss_pred ccCC
Q 022672 151 HPVL 154 (294)
Q Consensus 151 ~~Pl 154 (294)
+.|.
T Consensus 71 aTp~ 74 (285)
T TIGR03215 71 ATSA 74 (285)
T ss_pred CCCc
Confidence 9983
No 341
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.39 E-value=0.061 Score=49.78 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=51.3
Q ss_pred EEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 75 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
+|+|+|. |-.|.++.|+|+..-.+++.....+... ...+.+++++++|++++|+|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence 7999998 9999999999865556777655322110 01245677889999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcC
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
.. .+..+. ... .+.|+.+||.|
T Consensus 59 ~~-~s~~~~-~~~---~~~g~~VIDlS 80 (310)
T TIGR01851 59 DD-AAREAV-SLV---DNPNTCIIDAS 80 (310)
T ss_pred HH-HHHHHH-HHH---HhCCCEEEECC
Confidence 32 223222 111 24688888887
No 342
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.39 E-value=0.043 Score=46.53 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=52.6
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--HHH-HH----------HhhhhhhhhhcCCCCcccc------c
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLE-KF----------VTAYGQFLKANGEQPVTWK------R 134 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--~~~-~~----------~~~~~~~~~~~~~~~~~~~------~ 134 (294)
+|+|||+|.+|..+++.|+ ..|+ ++..+|...-. ... .+ .+.....+.... ...... .
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEeecC
Confidence 4899999999999999985 5677 58888866410 000 00 000001111111 111110 1
Q ss_pred cCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672 135 ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 169 (294)
Q Consensus 135 ~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~ 169 (294)
..+++++++++|+|+.|.- +.+++..++....+.
T Consensus 79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~ 112 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN 112 (174)
T ss_pred hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 1245678889999998854 677777666665553
No 343
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.34 E-value=0.11 Score=50.28 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=58.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HH-HHhhcC
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MD-EVLREA 145 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-ell~~a 145 (294)
.+..+++.|+|+|.+|+.+++.| ...|.+|+++|..++.. +...... .....-.-...+ |+ .-+.++
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL-------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC-------CCCeEEECCCCCHHHHHhcCCccC
Confidence 34578999999999999999998 68899999999876532 2211100 000000001112 22 224789
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
|.|+++.+.. ...++-....+.+.+..+++-+
T Consensus 299 ~~vi~~~~~~--~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 299 DAFIALTNDD--EANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CEEEECCCCc--HHHHHHHHHHHHhCCCeEEEEE
Confidence 9999888743 3334434444555555555543
No 344
>PLN02602 lactate dehydrogenase
Probab=95.34 E-value=0.09 Score=49.61 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=58.5
Q ss_pred CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||.|.+|..+|-.|+ +++.-++..+|...........+-. . ....... .......+.++ +++||+|+++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~-~-~~~~~~~-~~i~~~~dy~~-~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQ-H-AAAFLPR-TKILASTDYAV-TAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHH-h-hhhcCCC-CEEEeCCCHHH-hCCCCEEEECC
Confidence 69999999999999998763 2444589999987643222222211 0 0000001 12222235554 89999999985
Q ss_pred CCCc---ccc-ccc--cH-------HHHhcCCCCcEEEEcC
Q 022672 153 VLDK---TTY-HLI--NK-------ERLATMKKEAILVNCS 180 (294)
Q Consensus 153 Plt~---~t~-~li--~~-------~~l~~mk~gailIN~a 180 (294)
-... +++ .++ |. +.+....|.+++|+++
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4321 223 111 11 2234456788999987
No 345
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.34 E-value=0.22 Score=43.62 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=58.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHH-H----hhc
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDE-V----LRE 144 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~e-l----l~~ 144 (294)
..|++|.|.|.|.+|+.+++.+ +..|.+|++.+++.... +. .... +... .... ..+..+ + -..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~~-~~~~-------g~~~~~~~~-~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-EL-AKEL-------GADHVIDYK-EEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HHHh-------CCceeccCC-cCCHHHHHHHhcCCC
Confidence 4678999999999999999875 78999999998765332 11 1111 1000 0000 011211 1 245
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
.|+++.+++.. ..-...+..|+++..+++++...
T Consensus 202 ~d~vi~~~~~~-----~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 202 ADVVIDAVGGP-----ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CCEEEECCCCH-----HHHHHHHHhcccCCEEEEEccCC
Confidence 78888877621 12255667788888888876543
No 346
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.32 E-value=0.46 Score=44.11 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=47.7
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672 70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 145 (294)
.+.|.+|+++|= +++.+++...+ ..+|+ ++....|..-. .+. .....+....++++.++++
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~-p~~-------------~~~~~~~~~~d~~ea~~~a 218 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL-PDK-------------VGNDSIKKFTELKPSLLNS 218 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC-cCc-------------cccceEEEEcCHHHHhCCC
Confidence 378999999998 59999999986 58999 89888774311 000 0001233457899999999
Q ss_pred CEEEE
Q 022672 146 DVISL 150 (294)
Q Consensus 146 DiV~l 150 (294)
|+|..
T Consensus 219 Dvvy~ 223 (310)
T PRK13814 219 DVIVT 223 (310)
T ss_pred CEEEE
Confidence 99976
No 347
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.29 E-value=0.073 Score=50.07 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=53.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCEEEE
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL 150 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~l 150 (294)
++|+|+|. |.+|+.+++.|...-++++.. .++..... ...+.+. .+ ...... ...++++ ...++|+|++
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~--~l~~~~~-~~--~~~~~~---~~~~~~~~~~~~vD~Vf~ 74 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK--PLSDVHP-HL--RGLVDL---VLEPLDPEILAGADVVFL 74 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc--chHHhCc-cc--ccccCc---eeecCCHHHhcCCCEEEE
Confidence 58999997 999999999884333778755 45322110 0000000 00 000010 1122332 4578999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 185 (294)
|+|.. ....+ ..+.++.|..+|+.|-.--.
T Consensus 75 alP~~-~~~~~----v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 75 ALPHG-VSMDL----APQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred CCCcH-HHHHH----HHHHHhCCCEEEECCcccCC
Confidence 99942 22211 12223578999999844333
No 348
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.25 E-value=0.19 Score=46.57 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=43.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCC--EEEEEcCCch-hHHHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~--~V~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
++|+|+|. |.+|..+|..|+ ..|. +|+.+|+... ..... ..+-. +.+...+ .........+.+ .+++||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~-d~~~~~~-~~~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIY-DALAAAG-IDAEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhh-hchhccC-CCcEEEECCCHH-HhCCCCEE
Confidence 47999998 999999999874 4444 6999998431 11111 11100 0000011 011122223554 48999999
Q ss_pred EEccC
Q 022672 149 SLHPV 153 (294)
Q Consensus 149 ~l~~P 153 (294)
+++..
T Consensus 77 iitag 81 (309)
T cd05294 77 IITAG 81 (309)
T ss_pred EEecC
Confidence 99986
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.068 Score=52.33 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=67.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
..+.++++.|||.|.+|.++|+.| ...|.+|.++|...........+ .+...+ +.+..-...+ ....+|+|
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~g---v~~~~~~~~~-~~~~~D~V 82 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALG---ATVRLGPGPT-LPEDTDLV 82 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcC---CEEEECCCcc-ccCCCCEE
Confidence 457899999999999999999987 58999999999664322111111 111112 1111101111 34579999
Q ss_pred EEccCCCcccc----------ccccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 022672 149 SLHPVLDKTTY----------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 149 ~l~~Plt~~t~----------~li~~-~~l-~~mk~----gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
+++.--.+.+. .++++ +++ ..+.+ ..+-|--+.|+.--..=|...|+.
T Consensus 83 v~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 83 VTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred EECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 88764333222 12322 232 33422 235555567777766666677754
No 350
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.047 Score=53.16 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=66.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+.|++|.|+|+|..|.++|+.| ...|.+|.++|....... . +...+.. .... .. +-+.++|+|+
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv 70 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV 70 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence 37789999999999999999987 689999999996543221 1 1111111 1111 11 2356899887
Q ss_pred Ecc--CCC-c----c---c----cccccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHP--VLD-K----T---T----YHLINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~--Plt-~----~---t----~~li~~-~~l~~-m-----k~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
... |.+ + . + ..++.+ +.+.. + +...+-|.-+.|+.--..-|...|+.
T Consensus 71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 643 211 1 1 0 111332 22222 2 33455666678888877777777765
No 351
>PRK05086 malate dehydrogenase; Provisional
Probab=95.21 E-value=0.13 Score=47.65 Aligned_cols=101 Identities=24% Similarity=0.224 Sum_probs=58.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHhh--cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhhcCCEE
Q 022672 74 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI 148 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~~aDiV 148 (294)
++|+|||. |.||+++|..|.. ..+.++..+|+..... ....+ +. +......... ..++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~-g~alD-----l~-~~~~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP-GVAVD-----LS-HIPTAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc-ceehh-----hh-cCCCCceEEEeCCCCHHHHcCCCCEE
Confidence 57999999 9999999977633 3556888899764321 00001 00 0000011111 24667788999999
Q ss_pred EEccCCCcccccc-----c------cHHHH---hcCCCCcEEEEcCCC
Q 022672 149 SLHPVLDKTTYHL-----I------NKERL---ATMKKEAILVNCSRG 182 (294)
Q Consensus 149 ~l~~Plt~~t~~l-----i------~~~~l---~~mk~gailIN~aRG 182 (294)
+++.-. +...++ + -++.. ....+.+++++++-.
T Consensus 74 IitaG~-~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 74 LISAGV-ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred EEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 998864 222221 1 12223 333578899998654
No 352
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.049 Score=53.35 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=67.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
+.||+|+|+|+|.-|.++|+.| ...|++|+++|........... .+..... . .....+ .+.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~-----~l~~~~~--~-~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG-----ALADAAL--L-VETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH-----HHhhcCE--E-EeCCCC-hHHccCCCEEEE
Confidence 5689999999999999999997 6899999999965432111100 0111000 0 011112 355678999877
Q ss_pred ccCCCccc----------cccccHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 151 HPVLDKTT----------YHLINKER--LAT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 151 ~~Plt~~t----------~~li~~~~--l~~-mk-----~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
..--.++. ..++.+-. +.. ++ ...+-|--+.|+.--..-+.+.|+.
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 65332321 12344333 232 32 1345565567887777777777754
No 353
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.15 E-value=0.14 Score=47.25 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=56.7
Q ss_pred EEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 76 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 76 vGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
|+|||.|.+|..+|-.|+ ..| .++..+|...........+ ....... . .........+ .+.+++||+|+++..
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-L~~~~~~-~-~~~~i~~~~~-~~~l~~aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-LSHASAF-L-ATGTIVRGGD-YADAADADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-HHHhccc-c-CCCeEEECCC-HHHhCCCCEEEEcCC
Confidence 589999999999998764 455 5899999876532221111 1110000 0 0111111234 357899999999986
Q ss_pred CCcccccc------------cc--HHHHhcCCCCcEEEEcC
Q 022672 154 LDKTTYHL------------IN--KERLATMKKEAILVNCS 180 (294)
Q Consensus 154 lt~~t~~l------------i~--~~~l~~mk~gailIN~a 180 (294)
. +...++ +. .+.+....|++++|+++
T Consensus 76 ~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 76 A-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 3 332221 10 12233345889999987
No 354
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.14 E-value=0.051 Score=51.75 Aligned_cols=100 Identities=22% Similarity=0.193 Sum_probs=59.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch------------------hHHHHHHhhhhhhhhhcCCCCc
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQPV 130 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 130 (294)
.|.+++|.|+|+|.+|..+++.|+ ..|+ ++..+|+..- ...+...+ .+.... ..+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~----~l~~~n-p~v 205 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQ----RLAALN-PDV 205 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHH----HHHHHC-CCC
Confidence 589999999999999999999984 6777 6888887520 11111111 111111 111
Q ss_pred ccc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672 131 TWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179 (294)
Q Consensus 131 ~~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 179 (294)
.+. ...+++++++++|+|+.|+- +.+++.++++...+ .+.-+|..
T Consensus 206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~ 256 (376)
T PRK08762 206 QVEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYG 256 (376)
T ss_pred EEEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEE
Confidence 111 11245678889999888875 45566666655443 23345554
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.098 Score=49.72 Aligned_cols=89 Identities=24% Similarity=0.328 Sum_probs=58.9
Q ss_pred cCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 022672 71 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 140 (294)
Q Consensus 71 l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 140 (294)
|.||||||+|+- .-...++++| +..|++|.+|||........ . .+ +.....++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~-~~-~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------N-FP-DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------c-CC-CceEeCCHHH
Confidence 999999999983 3456788887 68999999999865432111 0 01 2345689999
Q ss_pred HhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672 141 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178 (294)
Q Consensus 141 ll~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN 178 (294)
.+++||.++++.. .++-+.+ +-+.+ .|| +.++++
T Consensus 373 ~~~~aDaivi~te-w~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 373 ALKGADAIVINTE-WDEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHhhCCEEEEecc-HHHHhcc-Chhhh-hcc-CCEEEe
Confidence 9999999999875 2333332 22233 455 344554
No 356
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.00 E-value=0.11 Score=48.13 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=80.4
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
++|.|+|.|.||.-++-+|+ ..|..|+.+.+... .+++... +-.+...............-.+.+..+|+|++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 47999999999999999985 56677777766543 2222211 11111111100000112233355668999999987
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC---CCCCCCCCccCCCCeEEccCCC
Q 022672 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---DEPYMKPGLSEMKNAIVVPHIA 230 (294)
Q Consensus 154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~---~EP~~~~~L~~~~nviiTPHia 230 (294)
. -++...+ +.....+++.+.++-.--| +=.++.+-+.....++.+ ++..+. .+|.. -.......+.+.+..+
T Consensus 77 a-~q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~-v~~~g~g~~~ig~~~~ 151 (307)
T COG1893 77 A-YQLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLG-GVTTHGAVREGPGH-VVHTGLGDTVIGELRG 151 (307)
T ss_pred c-ccHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEE-EEeeeeeEecCCce-EEEecCCcEEEccCCC
Confidence 3 3444433 5566777888777644333 333445555555543332 122111 12221 1123356777777776
Q ss_pred CCc
Q 022672 231 SAS 233 (294)
Q Consensus 231 ~~t 233 (294)
..+
T Consensus 152 ~~~ 154 (307)
T COG1893 152 GRD 154 (307)
T ss_pred Cch
Confidence 554
No 357
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.96 E-value=0.17 Score=49.27 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=70.6
Q ss_pred ccCCCEEEEEcC----ChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672 70 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 143 (294)
Q Consensus 70 ~l~gktvGIIGl----G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 143 (294)
-++=++|.|||. |.+|..+.+.| +..|+ +|+..+|..... .+...+.+++++-.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~ 63 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD 63 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence 356688999999 88999999987 55554 788888764321 12334578999888
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcE-EEEcCCCcc-----cCHHHHHHHHHcCCcce
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAI-LVNCSRGPV-----IDEVALVEHLKQNPMFR 201 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gai-lIN~aRG~~-----vd~~aL~~aL~~g~i~g 201 (294)
..|++++++| .+.+...+ ++..+ ..-.++ ++.-+-++. ..+++|.+..+++.+.-
T Consensus 64 ~~Dlavi~vp-~~~~~~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girv 124 (447)
T TIGR02717 64 PVDLAVIVVP-AKYVPQVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRL 124 (447)
T ss_pred CCCEEEEecC-HHHHHHHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEE
Confidence 8999999999 23444444 33333 333344 443333332 23567888877776653
No 358
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.94 E-value=0.088 Score=47.35 Aligned_cols=187 Identities=19% Similarity=0.156 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC----CC-------E
Q 022672 31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 99 (294)
Q Consensus 31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~----g~-------~ 99 (294)
+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|-.+|+.|. .. |. +
T Consensus 4 TaaV~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~ 61 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV---------------------TGKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR 61 (255)
T ss_dssp HHHHHHHHHHHHHHH---------------------HTS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred hHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence 455677777777762 245699999999999999999999874 34 66 5
Q ss_pred EEEEcCCch-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCCccccccccHHHHhcCCC
Q 022672 100 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK 172 (294)
Q Consensus 100 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~Plt~~t~~li~~~~l~~mk~ 172 (294)
++.+|+..- .........| ....... ....+|.|+++.+ |+++=+- ...+.|+++.++.|.+
T Consensus 62 i~lvD~~Gll~~~r~~l~~~~~~~----a~~~~~~---~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~ 130 (255)
T PF03949_consen 62 IWLVDSKGLLTDDREDLNPHKKPF----ARKTNPE---KDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK 130 (255)
T ss_dssp EEEEETTEEEBTTTSSHSHHHHHH----HBSSSTT---T--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred EEEEeccceEeccCccCChhhhhh----hccCccc---ccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence 888887621 1111111111 1111111 1125899999999 9987664 2578899999999987
Q ss_pred ---CcEEEEcCCCcccCHHHHHHHHHc--CCcceEEeeCCCCCCCC-C---CCccCCCCeEEccCCCCC-----cHHHHH
Q 022672 173 ---EAILVNCSRGPVIDEVALVEHLKQ--NPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIASA-----SKWTRE 238 (294)
Q Consensus 173 ---gailIN~aRG~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~-~---~~L~~~~nviiTPHia~~-----t~~~~~ 238 (294)
..++.=.|....--|-.=.++.+- |+...| .-...+|.. + ...-+..|+++-|=++-. ...-.+
T Consensus 131 ~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~A--tGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd 208 (255)
T PF03949_consen 131 HNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFA--TGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITD 208 (255)
T ss_dssp HSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEE--ESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--H
T ss_pred cCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEe--cCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCH
Confidence 899999998776333333334333 332222 111122210 1 123356788888865421 111235
Q ss_pred HHHHHHHHHHHHHH
Q 022672 239 GMATLAALNVLGKI 252 (294)
Q Consensus 239 ~~~~~~~~nl~~~~ 252 (294)
.|...+++-|.++.
T Consensus 209 ~M~~aAA~aLA~~v 222 (255)
T PF03949_consen 209 EMFLAAAEALADLV 222 (255)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC
Confidence 56555666665544
No 359
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.90 E-value=0.041 Score=43.13 Aligned_cols=87 Identities=11% Similarity=0.208 Sum_probs=52.3
Q ss_pred cCChHHHHHHHHHhhc---CCCEEEE-EcCC--chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEc
Q 022672 80 GAGRIGSAYARMMVEG---FKMNLIY-YDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 151 (294)
Q Consensus 80 GlG~IG~~vA~~L~~~---~g~~V~~-~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~ 151 (294)
|+|.||+.+++.|.+. .++++.+ ++++ ......... .......++++++. +.|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999998533 2777664 5665 111110000 01123478999998 99999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 185 (294)
.+. +. +.+-..+.|+.|.-+|-.+-+.+.
T Consensus 67 t~~-~~----~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSS-EA----VAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSC-HH----HHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCc-hH----HHHHHHHHHHCCCeEEEECHHHhh
Confidence 652 22 223345667788899999888888
No 360
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.86 E-value=0.097 Score=48.49 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=44.0
Q ss_pred EEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672 75 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 153 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P 153 (294)
+|+|||.|.+|..+|-.|+. +..-++..+|...........+-. ....-........ ...+ .+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~-~~~~~~~~~~~~i-~~~~-y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFH-HATALTYSTNTKI-RAGD-YDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHH-hhhccCCCCCEEE-EECC-HHHhCCCCEEEECCC
Confidence 58999999999999987642 333479999987543222222210 0000000001111 1234 466899999998765
Q ss_pred C
Q 022672 154 L 154 (294)
Q Consensus 154 l 154 (294)
.
T Consensus 78 ~ 78 (307)
T cd05290 78 P 78 (307)
T ss_pred C
Confidence 3
No 361
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.86 E-value=0.058 Score=54.28 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
....|+|||||-|..|+.+++.+ +.+|++|+.+|+.+......+.+.+ ....+.....+.++.+++|+|.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~~---------~v~~~~D~~~l~~~a~~~dvIt 88 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAARH---------VVGSFDDRAAVREFAKRCDVLT 88 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCcee---------eeCCCCCHHHHHHHHHHCCEEE
Confidence 47889999999999999999985 7899999999987643211111100 0000111123566678889887
Q ss_pred EccC
Q 022672 150 LHPV 153 (294)
Q Consensus 150 l~~P 153 (294)
....
T Consensus 89 ~e~e 92 (577)
T PLN02948 89 VEIE 92 (577)
T ss_pred EecC
Confidence 6544
No 362
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.81 E-value=0.051 Score=45.45 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=47.4
Q ss_pred EEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672 76 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 154 (294)
Q Consensus 76 vGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 154 (294)
|.|+|. |.+|+.+++.| ...|.+|++..|++.+..+ ... +. .....+....++.+.++.+|.|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~~~----~~---~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--SPG----VE---IIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--CTT----EE---EEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--ccc----cc---cceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 678995 99999999997 5788999999888764321 000 00 0001112224567788999999999974
Q ss_pred Cc
Q 022672 155 DK 156 (294)
Q Consensus 155 t~ 156 (294)
+.
T Consensus 71 ~~ 72 (183)
T PF13460_consen 71 PP 72 (183)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 363
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.76 E-value=0.1 Score=45.60 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
.+.++++.|+|. |.||+.+++.| ...|++|++.+++...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 367899999996 89999999998 4679999999987643
No 364
>PRK08223 hypothetical protein; Validated
Probab=94.75 E-value=0.12 Score=47.48 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=57.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCccc-
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTW- 132 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~- 132 (294)
..|++++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-.. .. .+ .+...+.+.... ..+.+
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~ 100 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIR 100 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEE
Confidence 4689999999999999999999985 6666 566776542110 00 00 000011111111 11111
Q ss_pred -----cccCCHHHHhhcCCEEEEccCCC-ccccccccHHHHh
Q 022672 133 -----KRASSMDEVLREADVISLHPVLD-KTTYHLINKERLA 168 (294)
Q Consensus 133 -----~~~~~l~ell~~aDiV~l~~Plt-~~t~~li~~~~l~ 168 (294)
....+.+++++++|+|+-++..- -+++.++++...+
T Consensus 101 ~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~ 142 (287)
T PRK08223 101 AFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ 142 (287)
T ss_pred EEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 11346778899999998777531 1677777766554
No 365
>PRK07411 hypothetical protein; Validated
Probab=94.70 E-value=0.083 Score=50.59 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=60.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~ 133 (294)
..|..++|+|||+|.+|..+|+.|+ ..|+ ++..+|...-.. +.+ + .+...+.+.... ..+.+.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n-p~v~v~ 111 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN-PYCQVD 111 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC-CCCeEE
Confidence 4689999999999999999999985 6676 577777542110 000 0 000011111111 111111
Q ss_pred ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCC
Q 022672 134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 172 (294)
Q Consensus 134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~ 172 (294)
...+..+++.++|+|+.|.- +.+++.++++...+.-+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 112 LYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 11235578899999988875 567888888776655444
No 366
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.70 E-value=0.11 Score=48.30 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=48.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
.+|+|||. |-.|+.+.+.|...-.+++.....+... .. .+.++.++++|++++|+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-----~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-----AARRELLNAADVAILCL 58 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-----cCchhhhcCCCEEEECC
Confidence 47999995 9999999999853335566544322111 00 23345678899999999
Q ss_pred CCCccccccccHHHHhcC-CCCcEEEEcC
Q 022672 153 VLDKTTYHLINKERLATM-KKEAILVNCS 180 (294)
Q Consensus 153 Plt~~t~~li~~~~l~~m-k~gailIN~a 180 (294)
|.. .. .+....+ +.|+.+||.|
T Consensus 59 p~~-~s-----~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 59 PDD-AA-----REAVALIDNPATRVIDAS 81 (313)
T ss_pred CHH-HH-----HHHHHHHHhCCCEEEECC
Confidence 932 22 2222222 5688889887
No 367
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.68 E-value=0.1 Score=52.75 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHH-hhcCCEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVI 148 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiV 148 (294)
...+-|+|+|++|+.+++.| ...|.++++.|.+++.. +... ..+. ..-+-...+. ++. +.++|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~~~--------~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NLMR--------KYGY-KVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HHHH--------hCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence 35799999999999999998 68899999999876542 2211 1111 1101111222 221 5789999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+++.+..+++..+ -...+.+.|...+|--+|
T Consensus 469 v~~~~d~~~n~~i--~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKI--VELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHH--HHHHHHHCCCCeEEEEeC
Confidence 9999855444333 333445566666654444
No 368
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.59 E-value=0.26 Score=47.21 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=48.8
Q ss_pred ccCCCEEEEEcC-----C---hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672 70 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 141 (294)
Q Consensus 70 ~l~gktvGIIGl-----G---~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 141 (294)
.+.|++|+|+|- | ++.++++..+ ..+|++|....|..-.......+..-......+ ..+....++++.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 478999999985 5 5668888876 579999999887531111111110000011111 123345799999
Q ss_pred hhcCCEEEEc
Q 022672 142 LREADVISLH 151 (294)
Q Consensus 142 l~~aDiV~l~ 151 (294)
++++|+|..-
T Consensus 260 v~~aDvVYtd 269 (395)
T PRK07200 260 FKDADIVYPK 269 (395)
T ss_pred hCCCCEEEEc
Confidence 9999999765
No 369
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.58 E-value=0.058 Score=44.75 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.9
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEc-CC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LY 106 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d-~~ 106 (294)
+|||-|||+||+.++|.+...-.+++++.+ +.
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 799999999999999987656788988764 44
No 370
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.16 Score=44.24 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=30.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 107 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~ 107 (294)
.+.++++.|.|. |.||+.+|+.| ...|++|+...++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence 367899999986 99999999998 47799988766543
No 371
>PRK04148 hypothetical protein; Provisional
Probab=94.54 E-value=0.12 Score=41.99 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=45.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.++++..||+| -|..+|+.| ...|.+|++.|.++... +...+ .+...........--++.+.+|+|-.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV-~~a~~--------~~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAV-EKAKK--------LGLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------hCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 56789999999 999999998 57899999999987642 21111 111111111122233677888888666
Q ss_pred cC
Q 022672 152 PV 153 (294)
Q Consensus 152 ~P 153 (294)
=|
T Consensus 85 rp 86 (134)
T PRK04148 85 RP 86 (134)
T ss_pred CC
Confidence 65
No 372
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.53 E-value=0.092 Score=52.58 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=54.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHH-HhhcCCEEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVIS 149 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~e-ll~~aDiV~ 149 (294)
-.+-|+|+|++|+.+|+.| +..|.++++.|.+++.. +...+ .+ ...-.-...+ +++ -++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~~~~--------~g-~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DELRE--------RG-IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHH--------CC-CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 4688999999999999998 68899999999876542 22111 11 1110011122 222 146899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEE
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILV 177 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailI 177 (294)
++.+..+++..++-. . ..+.+...+|
T Consensus 487 v~~~~~~~~~~iv~~-~-~~~~~~~~ii 512 (558)
T PRK10669 487 LTIPNGYEAGEIVAS-A-REKRPDIEII 512 (558)
T ss_pred EEcCChHHHHHHHHH-H-HHHCCCCeEE
Confidence 999865554444322 2 2334555555
No 373
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.53 E-value=0.16 Score=45.60 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.4
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 71 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 71 l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
+.||++.|.|.+ .||+++|+.|+ ..|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 789999999996 69999999985 679999887765
No 374
>PRK13529 malate dehydrogenase; Provisional
Probab=94.52 E-value=1.7 Score=43.41 Aligned_cols=202 Identities=20% Similarity=0.226 Sum_probs=118.5
Q ss_pred CcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc-
Q 022672 17 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG- 95 (294)
Q Consensus 17 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~- 95 (294)
.|.+.|.-= +-+|--+++-+|+..|- .|..|.+.+|.|+|.|..|-.+|+.|...
T Consensus 263 ~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~ 318 (563)
T PRK13529 263 EICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAM 318 (563)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHH
Confidence 466666532 33555677777877762 23568999999999999999999987532
Q ss_pred --CCC-------EEEEEcCCc---hhH--HHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhcC--CEEEEccCCCc
Q 022672 96 --FKM-------NLIYYDLYQ---ATR--LEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVLDK 156 (294)
Q Consensus 96 --~g~-------~V~~~d~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiV~l~~Plt~ 156 (294)
.|. +++.+|+.. ..+ .......|.. .......+ ....+|.|+++.+ |+++=+-
T Consensus 319 ~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~----~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S---- 390 (563)
T PRK13529 319 VREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYAR----KREELADWDTEGDVISLLEVVRNVKPTVLIGVS---- 390 (563)
T ss_pred HHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhh----hcccccccccccCCCCHHHHHhccCCCEEEEec----
Confidence 466 789998762 111 1111111211 11000001 1225899999988 8887543
Q ss_pred cccccccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-cceEEeeCCCCCCCC-C---CCccCCCCeEEc
Q 022672 157 TTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIVV 226 (294)
Q Consensus 157 ~t~~li~~~~l~~mk~---gailIN~aRG~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~~-~---~~L~~~~nviiT 226 (294)
..-+.++++.++.|.+ ..++.=.|+...--|-.-.+|.+ +|+ |.+.+. .-.|.. + ..--+..|+++-
T Consensus 391 ~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~iF 467 (563)
T PRK13529 391 GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---PFAPVEYNGKTYPIGQCNNAYIF 467 (563)
T ss_pred CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---CCCCeeeCCeEeccCcCcceeec
Confidence 2357899999999987 89999999877633333333333 454 333332 112211 0 112356889999
Q ss_pred cCCCCCc-----HHHHHHHHHHHHHHHHHHHc
Q 022672 227 PHIASAS-----KWTREGMATLAALNVLGKIK 253 (294)
Q Consensus 227 PHia~~t-----~~~~~~~~~~~~~nl~~~~~ 253 (294)
|=++-.. ..-.+.|...+++-+.+...
T Consensus 468 PGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 468 PGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred ccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 9876321 11235566666666666554
No 375
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.45 E-value=0.19 Score=48.66 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=61.1
Q ss_pred CEEEEEcCChHHHHHHHHHhhc---------CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672 74 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 143 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~---------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 143 (294)
-+|||+|+|.||+.+++.|.+. .+.++. ++|++.... .. ..........++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHhh
Confidence 3799999999999998876321 245654 456654321 00 00011223468999995
Q ss_pred --cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHcCCc
Q 022672 144 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-EVALVEHLKQNPM 199 (294)
Q Consensus 144 --~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd-~~aL~~aL~~g~i 199 (294)
+.|+|+.+++...... .-..+.|+.|.-+|-..-.-... -+.|.++.++...
T Consensus 70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 4699998886422111 22235566676666443322222 3557776666554
No 376
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.40 E-value=0.058 Score=50.64 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=30.0
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
||||||-|..|+.+++.+ +.+|++|+++|+.+..
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~ 34 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANS 34 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCC
Confidence 599999999999999985 7899999999987543
No 377
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.40 E-value=0.19 Score=46.50 Aligned_cols=68 Identities=25% Similarity=0.444 Sum_probs=44.1
Q ss_pred CEEEEEcCChHHH-HHHHHHhhcCC--CEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCE
Q 022672 74 QTVGVIGAGRIGS-AYARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 147 (294)
Q Consensus 74 ktvGIIGlG~IG~-~vA~~L~~~~g--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi 147 (294)
.++||||+|.+++ ..+..+ ...+ +.++ .+|++... .+.+.+.++ .. ..+.+++++++. .|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~----------~~-~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG----------IA-KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC----------CC-cccCCHHHHhcCCCCCE
Confidence 4799999997775 466665 4554 4544 56887654 233332221 11 245789999976 489
Q ss_pred EEEccCC
Q 022672 148 ISLHPVL 154 (294)
Q Consensus 148 V~l~~Pl 154 (294)
|+++.|.
T Consensus 71 V~Iatp~ 77 (342)
T COG0673 71 VYIATPN 77 (342)
T ss_pred EEEcCCC
Confidence 9999993
No 378
>PRK15076 alpha-galactosidase; Provisional
Probab=94.39 E-value=0.19 Score=48.80 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred CEEEEEcCChHHHHHHH--HHh--hcC-CCEEEEEcCCchhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 74 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~--~L~--~~~-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
++|+|||.|.+|...+- .++ .++ +.+|+.+|....... ..... ...........+....++.+.+++||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~----~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR----KLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 47999999999955443 222 344 459999998764422 11111 11111122233444678889999999
Q ss_pred EEEEccCC
Q 022672 147 VISLHPVL 154 (294)
Q Consensus 147 iV~l~~Pl 154 (294)
+|+.+.-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99888754
No 379
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.37 E-value=0.31 Score=45.45 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=58.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCC-------EEEEEcCCchh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHh
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVL 142 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell 142 (294)
++|+|||. |.+|..+|-.|. ..+. ++..+|..... ......+ +.... ..........+..+.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~ 76 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAF 76 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHh
Confidence 48999999 999999998764 3333 78899984322 1111111 00000 0000011123456778
Q ss_pred hcCCEEEEccCCCc---cccc-cc--cH-------HHHhcCC-CCcEEEEcCCCcccCHHHHH
Q 022672 143 READVISLHPVLDK---TTYH-LI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALV 191 (294)
Q Consensus 143 ~~aDiV~l~~Plt~---~t~~-li--~~-------~~l~~mk-~gailIN~aRG~~vd~~aL~ 191 (294)
++||+|+++.-... +|+- ++ |. ..+.... |.+++|.++ ..+|.-.-+
T Consensus 77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 99999998875321 1211 01 11 1222334 588899886 556655533
No 380
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.35 E-value=2.2 Score=40.11 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=47.1
Q ss_pred c-CCCEEEEEcCC-------hHHHHHHHHHhhcCCCEEEEEcC-CchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672 71 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 141 (294)
Q Consensus 71 l-~gktvGIIGlG-------~IG~~vA~~L~~~~g~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 141 (294)
+ .|++|+|++.| ++.++++..+ ..||++|.+..| ..-...+.+.+..-......+ ..+....++++.
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea 241 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA 241 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 6 78999887644 6788888876 579999999988 321111111110000011111 223445799999
Q ss_pred hhcCCEEEEcc
Q 022672 142 LREADVISLHP 152 (294)
Q Consensus 142 l~~aDiV~l~~ 152 (294)
++++|+|..-.
T Consensus 242 ~~~aDvvy~~~ 252 (335)
T PRK04523 242 YAGADVVYAKS 252 (335)
T ss_pred hCCCCEEEece
Confidence 99999996643
No 381
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.2 Score=48.56 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=67.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
+.+|++.|+|.|.+|.++|+.| ...|.+|.++|...... ..+ +.... ..+....-..-++.+.++|+|+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~--------l~~~~-~gi~~~~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ--------IGKMF-DGLVFYTGRLKDALDNGFDILA 72 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH--------Hhhcc-CCcEEEeCCCCHHHHhCCCEEE
Confidence 5689999999999999999987 68999999999765321 111 11100 0111111111234557899988
Q ss_pred EccCCCcccc----------cccc-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHPVLDKTTY----------HLIN-KERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~Plt~~t~----------~li~-~~~l~~-mk---~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
...--.++.. .++. .+++.. ++ ...+-|--+.|+.--..=+...|+.
T Consensus 73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 7654433221 1222 233333 32 2345555567887777767777765
No 382
>PRK06128 oxidoreductase; Provisional
Probab=94.24 E-value=0.19 Score=45.81 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=30.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
.+.||++.|.|. |.||+++|+.|+ ..|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence 488999999987 899999999984 679998876543
No 383
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.18 Score=45.86 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=32.9
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
..+.||++.|.|. |.||..+|+.|+ ..|++|+.++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 3688999999986 889999999984 67999998887643
No 384
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.11 E-value=0.15 Score=46.93 Aligned_cols=108 Identities=22% Similarity=0.248 Sum_probs=68.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhh-hhhhc-CCCCccccc----------cC
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ-FLKAN-GEQPVTWKR----------AS 136 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~----------~~ 136 (294)
......++-++|+|-+|-..+-. +.-.|+-|..+|-+.....+. ...+. ++... ....-++.. ..
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv--~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQV--ESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhh--hhcccccccccccccCCCccccCCHHHHHHHHH
Confidence 35677888999999999888765 467899999988765432111 00000 00000 000011111 12
Q ss_pred CHHHHhhcCCEEEEc--cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 137 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 137 ~l~ell~~aDiV~l~--~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
-+.+..++.|+|+.. +|.. ..-.++.+++.+.||||+++|+.+
T Consensus 237 ~~a~~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHHHhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEeh
Confidence 255667899999654 5643 356788999999999999999984
No 385
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.06 E-value=0.13 Score=49.24 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=58.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-.. +. .+ .+...+.+.... ..+...
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~i~ 115 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN-PLVNVR 115 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC-CCcEEE
Confidence 3589999999999999999999985 5565 677887542110 00 00 000001111111 111111
Q ss_pred ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672 134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 171 (294)
Q Consensus 134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk 171 (294)
...+..++++++|+|+.|.- +.+++.++|+...+.-+
T Consensus 116 ~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~ 158 (392)
T PRK07878 116 LHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVLAGK 158 (392)
T ss_pred EEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 11235678899999988764 56778788776655433
No 386
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.04 E-value=0.14 Score=49.38 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=50.8
Q ss_pred CcccCCCEEEEEcC----------ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672 68 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 136 (294)
Q Consensus 68 g~~l~gktvGIIGl----------G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
+.++.|++|+|+|+ ..-...+++.| ...| .+|.+|||........ ... .....
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~------------~~~---~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK------------LDG---LVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh------------ccC---ceeeC
Confidence 45689999999998 44677899988 5675 9999999975321000 000 01236
Q ss_pred CHHHHhhcCCEEEEccC
Q 022672 137 SMDEVLREADVISLHPV 153 (294)
Q Consensus 137 ~l~ell~~aDiV~l~~P 153 (294)
++++.+++||.|+++.+
T Consensus 379 ~~~~~~~~ad~vvi~t~ 395 (415)
T PRK11064 379 SLDEALATADVLVMLVD 395 (415)
T ss_pred CHHHHHhCCCEEEECCC
Confidence 88999999999999987
No 387
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.99 E-value=0.13 Score=45.06 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=46.8
Q ss_pred EEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH-HHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEEc
Q 022672 76 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 76 vGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~ 151 (294)
|.|+|. |.+|+.+++.|. .-+.+|.+.-|...+. ...+. ..+..- ..+...++|.+.++.+|.|+++
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~--------~~g~~vv~~d~~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQ--------ALGAEVVEADYDDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHH--------HTTTEEEES-TT-HHHHHHHHTTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhh--------cccceEeecccCCHHHHHHHHcCCceEEee
Confidence 678996 999999999985 5788888877765432 22211 111111 1122335678889999999999
Q ss_pred cCCC
Q 022672 152 PVLD 155 (294)
Q Consensus 152 ~Plt 155 (294)
+|..
T Consensus 72 ~~~~ 75 (233)
T PF05368_consen 72 TPPS 75 (233)
T ss_dssp SSCS
T ss_pred cCcc
Confidence 9854
No 388
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.96 E-value=0.32 Score=45.70 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l 150 (294)
.|++|.|.|.|.+|...++. ++.+|.+|++.+.+.....+ ....+ +.... .......+.++....|+|+-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~~~~~-~~~~~-------Ga~~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSNKEDE-AINRL-------GADSFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcchhhh-HHHhC-------CCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence 58899999999999999987 58999998887765433211 11111 11000 00000123333345788887
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
++.. +.+ + .+.++.++++..+|.++.
T Consensus 254 ~~g~-~~~---~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVSA-VHA---L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCCC-HHH---H-HHHHHHhcCCcEEEEeCC
Confidence 7641 111 2 446677888888887753
No 389
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.92 E-value=0.15 Score=47.31 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.8
Q ss_pred CEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcC
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL 105 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~ 105 (294)
.+|||=|||+||+.++|.+...- .++|++.+-
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 37999999999999999975455 599998765
No 390
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.88 E-value=0.24 Score=45.43 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=51.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 150 (294)
.|+++.|+|.|.||...++. ++.+|++ |++.|...... +.. ... .. ...-++.-...|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~-ak~~G~~~v~~~~~~~~rl-~~a-----------~~~--~~--i~~~~~~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARL-TKAAGGSPPAVWETNPRRR-DGA-----------TGY--EV--LDPEKDPRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-Hhh-----------hhc--cc--cChhhccCCCCCEEEE
Confidence 57789999999999999987 4789997 55566644321 110 000 00 0111111235788887
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+... +.+ + ...++.|+++..++.++
T Consensus 207 ~~G~-~~~---~-~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ASGD-PSL---I-DTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCCC-HHH---H-HHHHHhhhcCcEEEEEe
Confidence 7652 111 1 45677788888888764
No 391
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.87 E-value=0.18 Score=47.08 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=46.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhc
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 144 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~ 144 (294)
.+..++|+|+|. |.||..+|..|+. +..-++..+|...... ...+ +..... ....... .+..+.+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g--~a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG--VAAD-----LSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc--cccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence 467789999999 9999999988731 4455899999832111 0001 001011 1111111 223678899
Q ss_pred CCEEEEccCC
Q 022672 145 ADVISLHPVL 154 (294)
Q Consensus 145 aDiV~l~~Pl 154 (294)
||+|++++-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999887753
No 392
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.86 E-value=0.34 Score=46.81 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=64.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
++.++++.|+|+|..|++.++.| +..|.+|.++|......... .+. .+ .....-..-.+.++..|+|+
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~-------~l~-~g---~~~~~~~~~~~~~~~~d~vv 70 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLD-------KLP-EN---VERHTGSLNDEWLLAADLIV 70 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHH-------HHh-cC---CEEEeCCCCHHHhcCCCEEE
Confidence 35688999999999999999876 68899999999754321000 010 01 11111111224466788765
Q ss_pred EccCCCccccc-----------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 150 LHPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 150 l~~Plt~~t~~-----------li~~-~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
...- -+.... ++.+ +.+.. ++...+-|--+.|+.--..-|.+.|+.
T Consensus 71 ~spg-i~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 71 ASPG-IALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred ECCC-CCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5442 222221 2222 33333 332344455567887777767777764
No 393
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.85 E-value=2.7 Score=38.99 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=49.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|++|++||- +++.++++..+ ..+|++|....|..-. +...+..-......+ .+....++++.++++|+|
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g----~i~~~~d~~~av~~aDvv 222 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG----TLSWEMNLHKAVSHADYV 222 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC----CeEEEeCHHHHhCCCCEE
Confidence 478999999998 68899988876 5799999998875421 111000000011111 123347899999999999
Q ss_pred EEc
Q 022672 149 SLH 151 (294)
Q Consensus 149 ~l~ 151 (294)
..-
T Consensus 223 y~d 225 (311)
T PRK14804 223 YTD 225 (311)
T ss_pred Eee
Confidence 773
No 394
>PRK10206 putative oxidoreductase; Provisional
Probab=93.84 E-value=0.2 Score=47.07 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=41.6
Q ss_pred EEEEEcCChHHHH-HHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672 75 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 149 (294)
Q Consensus 75 tvGIIGlG~IG~~-vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~ 149 (294)
++||||+|.|++. .+..+... -++++. ++|+..... .+.+.+ + ....+.+++++++ +.|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence 6999999998763 34433222 367876 478765321 211111 1 1124578999995 579999
Q ss_pred EccCC
Q 022672 150 LHPVL 154 (294)
Q Consensus 150 l~~Pl 154 (294)
+++|.
T Consensus 70 I~tp~ 74 (344)
T PRK10206 70 VCTHA 74 (344)
T ss_pred EeCCc
Confidence 99993
No 395
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.84 E-value=0.23 Score=53.17 Aligned_cols=107 Identities=9% Similarity=0.108 Sum_probs=65.1
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHH--h--------hh----hhh-hhhcCCCCccc---
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AY----GQF-LKANGEQPVTW--- 132 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~--~--------~~----~~~-~~~~~~~~~~~--- 132 (294)
+.-.++.|+|.|++|+..++.+ .++|++ . .++..-..+.... . .| ..+ ........-.+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 3457899999999999999885 788888 2 3332211111000 0 00 000 00000000000
Q ss_pred -------cccCC-HHHHhhcCCEEEEccCCCccccccccHH-HHhcCCCCc----EEEEcC
Q 022672 133 -------KRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS 180 (294)
Q Consensus 133 -------~~~~~-l~ell~~aDiV~l~~Plt~~t~~li~~~-~l~~mk~ga----ilIN~a 180 (294)
.+... +++.++.+|+++.|+-..+.+-.++.++ +.+.||+|. ++++++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 01111 4578899999999998777788999888 778999998 888875
No 396
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.84 E-value=0.36 Score=46.83 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=60.3
Q ss_pred CcccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672 68 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 137 (294)
Q Consensus 68 g~~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
+..+.|++|+|+|+ ..-+..+++.| ...|.+|.+|||........ .. .+ ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~------------~~---~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--RE------------YG---IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hh------------cC---ccc
Confidence 34689999999998 45678899987 67899999999974321100 00 00 011
Q ss_pred HHH-HhhcCCEEEEccCCCccccccccHHHH-hcCCCCcEEEEcCCCcc
Q 022672 138 MDE-VLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPV 184 (294)
Q Consensus 138 l~e-ll~~aDiV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~aRG~~ 184 (294)
+++ .++.+|.|+++.. -++-+. ++-+.+ +.||...++|++ |+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~-h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVG-HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccC-CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 222 3678999999987 333333 443433 445545688884 5544
No 397
>PLN00106 malate dehydrogenase
Probab=93.83 E-value=0.18 Score=47.01 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=60.5
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhcC
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA 145 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a 145 (294)
...++|+|+|. |.+|..+|..|+. +..-++..+|...... ...+ +.... ..... ...+++.+.+++|
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g--~a~D-----l~~~~-~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPG--VAAD-----VSHIN-TPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCe--eEch-----hhhCC-cCceEEEEeCCCCHHHHcCCC
Confidence 44579999999 9999999998742 3444899999765111 0001 00000 01111 1234567889999
Q ss_pred CEEEEccCCCcc---cccc-c--c----H---HHHhcCCCCcEEEEcCCCc
Q 022672 146 DVISLHPVLDKT---TYHL-I--N----K---ERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 146 DiV~l~~Plt~~---t~~l-i--~----~---~~l~~mk~gailIN~aRG~ 183 (294)
|+|+++.-.... ++.- + | + +.+....|.+++++++-.-
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 999887653221 1111 1 1 1 2233345889999987644
No 398
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.82 E-value=0.79 Score=42.02 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
|++++|||--.=-..+++.| ...|++|..|.-..... + -.+.....+.++.++++|+|++=+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~--~~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------G--FTGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------c--cccceeecchhhhhccCCEEEECC
Confidence 68999999888888889988 57888876654211000 0 001223345566689999999999
Q ss_pred CCCcccc----------ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672 153 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200 (294)
Q Consensus 153 Plt~~t~----------~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 200 (294)
|.+.+.. -.++++.++.|++++++ -++ ++..++-++.++..|.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCTI-YVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCEE-EEe----cCCHHHHHHHHHCCCe
Confidence 9766532 12568899999986653 343 4445565566665554
No 399
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=93.80 E-value=0.37 Score=47.78 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=67.8
Q ss_pred CcccCCCEEEEEcC---ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672 68 GNLLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 143 (294)
Q Consensus 68 g~~l~gktvGIIGl---G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 143 (294)
|..+.|++|++||- +++.++++..+ ..|| ++|....|..-...+.+.+. +... +..+....++++.++
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~~---G~~v~i~~d~~eav~ 240 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKKN---GFEVRIFSSIEEYLS 240 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHhc
Confidence 33588999999998 58999999876 5788 99988877432111222111 1111 122344578999999
Q ss_pred cCCEE--EE-------ccCCC--c---c--ccccccHHHHhcCCCCcEEEEcC
Q 022672 144 EADVI--SL-------HPVLD--K---T--TYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 144 ~aDiV--~l-------~~Plt--~---~--t~~li~~~~l~~mk~gailIN~a 180 (294)
++|+. .. ..... + + -...++++.++.+|++++|..+.
T Consensus 241 ~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 241 QKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred cCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 99952 22 12110 0 0 13446889999999999999884
No 400
>PRK07877 hypothetical protein; Provisional
Probab=93.76 E-value=0.12 Score=53.15 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=59.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchh--HHHHH-----------HhhhhhhhhhcCCCCcccc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQAT--RLEKF-----------VTAYGQFLKANGEQPVTWK 133 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~ 133 (294)
..|.+++|+|+|+| +|..+|..|+ ..|. +++.+|...-. .+.+. .+...+.+.... ..+.+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in-p~i~v~ 179 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD-PYLPVE 179 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC-CCCEEE
Confidence 36999999999999 9999999985 4553 67766643110 00000 000011111111 111111
Q ss_pred ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672 134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 169 (294)
Q Consensus 134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~ 169 (294)
...+++++++++|+|+-|+- +-+++.++++...+.
T Consensus 180 ~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 180 VFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 12468889999999999997 578899998777664
No 401
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.71 E-value=0.54 Score=42.78 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 109 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~ 109 (294)
++++.|+|.|..+++++-.| ...|+ +|++++|+.+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence 57899999999999999987 46787 59999998654
No 402
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.71 E-value=0.36 Score=45.06 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhcCC
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD 146 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aD 146 (294)
..|++|.|+|.|.+|...++.+ +..|++|++++++. ....+ +...+ +...+.. ...++.+ .....|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~~~~~-------Ga~~v~~-~~~~~~~~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-IVEEL-------GATYVNS-SKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-HHHHc-------CCEEecC-CccchhhhhhcCCCC
Confidence 3688999999999999999874 78999999998742 12211 11111 1110100 0111111 224578
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
+|+-++.. +. .+ .+.++.|+++..++.++.
T Consensus 241 ~vid~~g~-~~---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 241 LIIEATGV-PP---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred EEEECcCC-HH---HH-HHHHHHccCCcEEEEEec
Confidence 88888752 11 12 556777888888877653
No 403
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.64 E-value=0.4 Score=45.13 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 109 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~ 109 (294)
.|++|.|.|.|.+|...++. ++..|+ +|++.+++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~l-ak~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLG-AVAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEEcCCHHH
Confidence 57899999999999999887 488999 68888876543
No 404
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.58 E-value=0.16 Score=49.68 Aligned_cols=111 Identities=24% Similarity=0.314 Sum_probs=63.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.||+|+|+|+|.-|.++|+.| .. |++|+++|....... ...+ +.. .. .....+ .+.+.++|+|+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~-~~~~-----~~~---~~--~~~~~~-~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRD-IFEE-----LYS---KN--AIAALS-DSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchH-HHHh-----hhc---Cc--eeccCC-hhHhhCCCEEEEC
Confidence 478999999999999999998 45 999999995433211 1000 000 00 001112 3456789998776
Q ss_pred cCCCccc----------cccccH-HHH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672 152 PVLDKTT----------YHLINK-ERL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 152 ~Plt~~t----------~~li~~-~~l-~~mk~-gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
.--.+.. ..++.+ +++ ..+++ ..+=|--+.|+.--..-|.+.|+.
T Consensus 71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 5332221 123333 232 33333 234454567887777777777765
No 405
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=93.56 E-value=0.36 Score=45.82 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=56.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l 150 (294)
.|++|.|.|.|.+|...++. ++.+|++|++.+...+...+. ...+ +.... .......+.+.....|+|+-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~~~~~-a~~l-------Ga~~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEKEREA-IDRL-------GADSFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHHhHHH-HHhC-------CCcEEEcCcCHHHHHHhhCCCcEEEE
Confidence 58899999999999999987 589999999887654332111 1111 11000 00000112233345688887
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 151 HPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+... +.+ + ...++.++++..++.++
T Consensus 249 ~~G~-~~~---~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 249 TVSA-EHA---L-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred CCCc-HHH---H-HHHHHhhcCCCEEEEEc
Confidence 7642 111 1 44566778888888775
No 406
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.53 E-value=0.89 Score=44.28 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=65.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhc--C----C--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEG--F----K--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~--~----g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 144 (294)
-+|+|||. |.+|..+|-.|+.+ | + -+++.+|...+.......+-... ..... .. .....+-.+.+++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~da-a~~~~-~~--v~i~~~~ye~~kd 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDS-LYPLL-RE--VSIGIDPYEVFQD 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHh-hhhhc-Cc--eEEecCCHHHhCc
Confidence 37999999 99999999887532 2 2 37888898766543322221110 00000 11 1111234577899
Q ss_pred CCEEEEccCCCcccccc-----c--cH-------HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 145 ADVISLHPVLDKTTYHL-----I--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~l-----i--~~-------~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
||+|++..-. +...++ + |. +.+.. -.|++++|.++ ..+|.-..+-.-.+
T Consensus 177 aDiVVitAG~-prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 177 AEWALLIGAK-PRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred CCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 9999988753 222221 1 11 12333 46789999886 56666665443333
No 407
>PLN02214 cinnamoyl-CoA reductase
Probab=93.50 E-value=0.23 Score=46.31 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=49.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCC----CCccccccCCHHHHhhc
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE----QPVTWKRASSMDEVLRE 144 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ell~~ 144 (294)
.+.+++|.|.|. |.||+.+++.| ..-|.+|.+.++............ +..... ...+.....+++++++.
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRE----LEGGKERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHH----hhCCCCcEEEEecCcCChHHHHHHHhc
Confidence 467899999998 99999999998 467999998887643211110000 000000 00111223457788899
Q ss_pred CCEEEEccC
Q 022672 145 ADVISLHPV 153 (294)
Q Consensus 145 aDiV~l~~P 153 (294)
+|+|+-+..
T Consensus 82 ~d~Vih~A~ 90 (342)
T PLN02214 82 CDGVFHTAS 90 (342)
T ss_pred CCEEEEecC
Confidence 999877764
No 408
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.50 E-value=0.24 Score=50.37 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=56.2
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcCCEE
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVI 148 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDiV 148 (294)
..++-|+|+|++|+.+|+.| +..|.++++.|.+++.. +... ..+. ..-+-...+.+- -++++|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~~~--------~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ETLR--------KFGM-KVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HHHH--------hcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46799999999999999998 68899999999876542 2211 1111 111111122221 24689999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVN 178 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN 178 (294)
+++.+..+.+..+ ....+.+.|+..++-
T Consensus 469 vv~~~d~~~n~~i--~~~ar~~~p~~~iia 496 (621)
T PRK03562 469 INAIDDPQTSLQL--VELVKEHFPHLQIIA 496 (621)
T ss_pred EEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence 9999754444333 334444556655543
No 409
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.50 E-value=1.7 Score=40.34 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=56.6
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCcccc----cc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTWK----RA 135 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~~----~~ 135 (294)
+|.|||+|.+|.++++.|+ -.|+ ++..+|...-.. +. .+ .+...+.+.... ..+... ..
T Consensus 1 kVlIVGaGGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHANI 78 (312)
T ss_pred CEEEECCCHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEeccC
Confidence 4899999999999999985 4565 577777542110 00 00 000011111111 111111 11
Q ss_pred C---CHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 136 S---SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 136 ~---~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
. ...+++++.|+|+.++- +.+++..+++-.... +.-+|+.+.
T Consensus 79 ~~~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 79 KDPDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred CCccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEec
Confidence 1 13478899999999985 566777777665543 344777653
No 410
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.18 Score=44.60 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=32.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.+.||++.|.|. |.||+++|+.| ...|++|+..+++..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 478999999986 79999999998 478999999887653
No 411
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.48 E-value=0.48 Score=44.28 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchh
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 109 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~ 109 (294)
.|++|.|.|.|.+|...++. ++.+|++ |++.+++...
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 58899999999999999987 5889985 8888876543
No 412
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.46 E-value=0.36 Score=43.57 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCch
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA 108 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~ 108 (294)
.|++|.|+|.|.||...++. ++.+|.+ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~-ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAA-AAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHH
Confidence 68899999999999999987 4889986 888876554
No 413
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.44 E-value=0.17 Score=45.44 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccH
Q 022672 85 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 164 (294)
Q Consensus 85 G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~ 164 (294)
|..+|-.++ ..|.+|+..||+.+-..+...+ .+.+ .++...++-.+..+.+.+.++..|....|-++. +
T Consensus 33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~----~ved-----AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r 101 (340)
T COG4007 33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWK----RVED-----AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R 101 (340)
T ss_pred chHHHHHHH-HcCCcEEeecCCccccCHHHHH----HHHh-----cCcEEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence 456776764 6799999999987543322111 1222 233444566688899999999999987877765 8
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672 165 ERLATMKKEAILVNCSRGPVIDEVALVEHL 194 (294)
Q Consensus 165 ~~l~~mk~gailIN~aRG~~vd~~aL~~aL 194 (294)
+.+..++.|+++.|+..-+.+ .|+..|
T Consensus 102 ei~~hvpEgAVicnTCT~sp~---vLy~~L 128 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSPV---VLYYSL 128 (340)
T ss_pred HHHhhCcCCcEecccccCchh---HHHHHh
Confidence 899999999999999886654 455555
No 414
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=93.39 E-value=0.38 Score=39.66 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=51.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
...|++|++||+ + +.++++| +..+.+++++|+++...... .... .....++++++||+|+
T Consensus 8 ~~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~~-------------~~~~---~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 8 IGPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGEE-------------PGDV---PDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS-------------CT-E---EGGGHHHHGGG-SEEE
T ss_pred hcCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCCC-------------CCcC---CHHHHHHHHccCCEEE
Confidence 357899999996 2 2367776 57899999999987542110 0001 2345778899999987
Q ss_pred EccCCCcccccccc---HHHHhcCCCCcEEEEcC
Q 022672 150 LHPVLDKTTYHLIN---KERLATMKKEAILVNCS 180 (294)
Q Consensus 150 l~~Plt~~t~~li~---~~~l~~mk~gailIN~a 180 (294)
+.-. -++| .+.++..+++..++=++
T Consensus 68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 68 ITGS------TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp EECH------HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred EEee------eeecCCHHHHHHhCccCCeEEEEe
Confidence 7642 1222 45666677666665544
No 415
>PRK12742 oxidoreductase; Provisional
Probab=93.36 E-value=0.57 Score=40.60 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
.+.||++.|.|. |.||+.+|+.| ...|++|+...++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 367899999996 89999999998 5789998876543
No 416
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.30 E-value=0.46 Score=43.83 Aligned_cols=95 Identities=21% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-ccccc--CCHHHHhh--cC
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRA--SSMDEVLR--EA 145 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~l~ell~--~a 145 (294)
.|.+|.|+|.|.+|...++.+ +.+|++ |++.+++.... +. ...+ +.... ..... ..+.++.. ..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPERL-EL-AKAL-------GADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEEcCCcchHHHHHHHhCCCCC
Confidence 489999999999999999874 889998 99888765432 11 1111 11000 00000 01222222 46
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
|+|+-+... +. .....+..++++..++.++.
T Consensus 233 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSGN-TA----ARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEcC
Confidence 787777652 11 11345667778877777654
No 417
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.26 E-value=0.54 Score=45.31 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=65.9
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 154 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 154 (294)
++.|||+|.+|.++|+.| +..|.+|.++|............ .+... ..+....-.+ .+.+.++|+|+...--
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~--~gi~~~~g~~-~~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLN--EGSVLHTGLH-LEDLNNADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhc--cCcEEEecCc-hHHhccCCEEEECCCC
Confidence 378999999999999997 68999999999765432111000 00000 0111111123 3556789988766533
Q ss_pred Ccccc----------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672 155 DKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 198 (294)
Q Consensus 155 t~~t~----------~li~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~g~ 198 (294)
.++.. .++.+ +++ ..++...+-|.-+.|+.--..=+...|+...
T Consensus 73 ~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 73 PPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 22211 12322 233 3334345666667888877777777776543
No 418
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.26 E-value=0.33 Score=45.48 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=49.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHhhcCCC---EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 73 GQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 73 gktvGIIGl-G~IG~~vA~~L~~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
+++|+|+|. |.+|+.+.+.|+ .-+. ++.+..+..... .. +.-.+ ....+... +. +.++++|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g-~~--------l~~~g-~~i~v~d~-~~-~~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAG-KE--------LSFKG-KELKVEDL-TT-FDFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCC-Ce--------eeeCC-ceeEEeeC-CH-HHHcCCCEE
Confidence 468999998 999999999984 5332 445553322111 00 00001 11111111 22 234789999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
++|+|-. .++.+. . +.++.|+.+|+.|
T Consensus 68 f~A~g~g-~s~~~~-~---~~~~~G~~VIDlS 94 (334)
T PRK14874 68 LFSAGGS-VSKKYA-P---KAAAAGAVVIDNS 94 (334)
T ss_pred EECCChH-HHHHHH-H---HHHhCCCEEEECC
Confidence 9999832 223222 1 2235788999877
No 419
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=93.24 E-value=0.47 Score=46.19 Aligned_cols=126 Identities=15% Similarity=0.254 Sum_probs=74.5
Q ss_pred CEEEEEcCChHHHH--HHHHHhh---cCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 74 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 74 ktvGIIGlG~IG~~--vA~~L~~---~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
.+|.|||.|.. .. +.+-|.+ .++ -+|+.+|...... +. .....+.+......+..+....+.++.++.|||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence 47999999986 33 2222221 243 6899999876432 21 222222233333345566677899999999999
Q ss_pred EEEccCCCcc-----------cccccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672 148 ISLHPVLDKT-----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL 194 (294)
Q Consensus 148 V~l~~Plt~~-----------t~~li~----------------------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL 194 (294)
|+...--... -+|++. .+.++...|++++||.+..--+-..++.+..
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~ 157 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLF 157 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHC
Confidence 9887643221 112222 1223445689999999887766666666554
Q ss_pred HcCCcceE
Q 022672 195 KQNPMFRV 202 (294)
Q Consensus 195 ~~g~i~ga 202 (294)
...++.|.
T Consensus 158 ~~~kviGl 165 (437)
T cd05298 158 PNARILNI 165 (437)
T ss_pred CCCCEEEE
Confidence 34455554
No 420
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.03 E-value=0.13 Score=49.43 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=27.8
Q ss_pred CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCch
Q 022672 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQA 108 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~ 108 (294)
.+|||.|||+||+.++|.+...++++|++ .|+...
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~ 121 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFID 121 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 48999999999999999853248999887 565543
No 421
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.01 E-value=0.63 Score=42.94 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-----hcC
Q 022672 73 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 145 (294)
Q Consensus 73 gktvGIIGl-G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a 145 (294)
|++|.|.|. |.+|+.+.+. ++.+|+ +|++.+++.... +...+.+ +....-.....++.+.+ ...
T Consensus 155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~-~~~~~~l-------Ga~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKC-QLLKSEL-------GFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-HHHHHhc-------CCcEEEECCCCCHHHHHHHHCCCCc
Confidence 489999998 9999999987 589998 899887765432 1111101 11111000112333222 246
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
|+++-++.. + .+ .+.+..++++..+|.++
T Consensus 226 d~vid~~g~-~----~~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVGG-E----IS-DTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCCc-H----HH-HHHHHHhccCCEEEEEe
Confidence 888776652 1 12 56677888888888775
No 422
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=92.99 E-value=3.4 Score=40.23 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.9
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC------EEEEEcCC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM------NLIYYDLY 106 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~------~V~~~d~~ 106 (294)
+|.|||.|.+|.++++.|+ ..|+ ++..+|..
T Consensus 1 kVlvVGaGGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFA-LMGVGTGESGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCcCCCCeEEEECCC
Confidence 4889999999999999985 5666 78888854
No 423
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.95 E-value=0.28 Score=45.54 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=45.2
Q ss_pred CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||.|.||+++|-+|. +.++-++..+|...........+ ...-....+ .........+ .+-++.||+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D-L~~~~~~~~-~~~~i~~~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD-LSHAAAPLG-SDVKITGDGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc-hhhcchhcc-CceEEecCCC-hhhhcCCCEEEEeC
Confidence 47999999999999998774 24566899999873321111111 000000000 0011111022 35678999999988
Q ss_pred --CCCc
Q 022672 153 --VLDK 156 (294)
Q Consensus 153 --Plt~ 156 (294)
|..|
T Consensus 78 G~prKp 83 (313)
T COG0039 78 GVPRKP 83 (313)
T ss_pred CCCCCC
Confidence 5444
No 424
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.94 E-value=0.59 Score=43.63 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=58.8
Q ss_pred EEEEEcC-ChHHHHHHHHHhhc--CC----CEEEEEcCCc--hhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhc
Q 022672 75 TVGVIGA-GRIGSAYARMMVEG--FK----MNLIYYDLYQ--ATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 144 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~--~g----~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 144 (294)
+|+|+|. |.||+.+|..|+.. ++ .++..+|... ........+ +.... ..........+..+.+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~D-----l~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVME-----LQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeee-----hhhhcccccCCcEEecChHHHhCC
Confidence 7999999 99999999887422 12 1588899865 211100000 00000 000001111456788999
Q ss_pred CCEEEEccCCCcccccc-----c--cH-------HHHhcC-CCCcEEEEcCCCcccCHHHHH
Q 022672 145 ADVISLHPVLDKTTYHL-----I--NK-------ERLATM-KKEAILVNCSRGPVIDEVALV 191 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~l-----i--~~-------~~l~~m-k~gailIN~aRG~~vd~~aL~ 191 (294)
||+|+++.-. +...++ + |. ..++.. +|++++|.++ ..+|.-.-+
T Consensus 77 aDiVVitAG~-~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 77 VDVAILVGAF-PRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred CCEEEEeCCC-CCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 9999887643 221111 0 11 123334 5788888885 566655533
No 425
>PRK05442 malate dehydrogenase; Provisional
Probab=92.90 E-value=0.81 Score=42.78 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=58.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHhh-cC-C----CEEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVE-GF-K----MNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~-~~-g----~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 144 (294)
++|+|||. |.+|..+|-.|.. +. + .++..+|..... ......+-. ....... ... ....+..+-+++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~-~~~~~~~-~~~--~i~~~~y~~~~d 80 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELD-DCAFPLL-AGV--VITDDPNVAFKD 80 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhh-hhhhhhc-CCc--EEecChHHHhCC
Confidence 48999998 9999999987642 22 2 178899975321 111111100 0000000 011 112355577899
Q ss_pred CCEEEEccCCCc---ccccc-c--cHH-------HHhc-CCCCcEEEEcCCCcccCHHHH
Q 022672 145 ADVISLHPVLDK---TTYHL-I--NKE-------RLAT-MKKEAILVNCSRGPVIDEVAL 190 (294)
Q Consensus 145 aDiV~l~~Plt~---~t~~l-i--~~~-------~l~~-mk~gailIN~aRG~~vd~~aL 190 (294)
||+|+++.-... +|+-- + |.+ .+.. -++.+++|.++ ..+|.-.-
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~ 138 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNAL 138 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHH
Confidence 999988764211 12211 1 111 1222 34788999987 55655543
No 426
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.24 Score=43.55 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
.+.||++.|.|. |.||+.+|+.|+ ..|++|+..+++...
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 478999999997 899999999984 679999999887643
No 427
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.87 E-value=0.31 Score=48.89 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
-.|+++.|.|. |.||+.+++.| ...|++|++++++...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 46889999997 99999999998 4779999998887644
No 428
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.83 E-value=0.42 Score=44.60 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=57.9
Q ss_pred EEEEEcC-ChHHHHHHHHHhhcCCC-------EEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhh
Q 022672 75 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR 143 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~~g~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~ 143 (294)
+|+|||. |.+|..+|-.|. ..+. ++..+|..... ......+- ........ ......+..+.++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----EDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHH-----hhccccccCCcEEecChHHHhC
Confidence 7999998 999999998763 3343 78999985421 11111110 00000000 1111235567789
Q ss_pred cCCEEEEccCCCc---ccccc-c--cHH-------HHhcCCC-CcEEEEcCCCcccCHHH
Q 022672 144 EADVISLHPVLDK---TTYHL-I--NKE-------RLATMKK-EAILVNCSRGPVIDEVA 189 (294)
Q Consensus 144 ~aDiV~l~~Plt~---~t~~l-i--~~~-------~l~~mk~-gailIN~aRG~~vd~~a 189 (294)
+||+|+++.-... +|+-- + |.+ .+....| .++++.++ ..+|.-.
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9999998765321 12211 1 111 2233344 88998886 5555444
No 429
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.80 E-value=0.71 Score=42.95 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI 148 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV 148 (294)
.|.+|.|+|.|.||...++.+++.+ +.+|++.|++..+. +.. . ..+ .. ...+++.. ..|+|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a-~-------~~~-----~~--~~~~~~~~~~g~d~v 226 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLF-S-------FAD-----ET--YLIDDIPEDLAVDHA 226 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHH-h-------hcC-----ce--eehhhhhhccCCcEE
Confidence 4889999999999999888753234 46899998765432 110 0 001 00 01112222 36888
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
+-++.. +.+...+ .+.++.++++..++.++
T Consensus 227 iD~~G~-~~~~~~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 FECVGG-RGSQSAI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EECCCC-CccHHHH-HHHHHhCcCCcEEEEEe
Confidence 877752 1111112 45677888888887764
No 430
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.78 E-value=0.46 Score=44.76 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=49.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhhc--C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 72 KGQTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 72 ~gktvGIIGl-G~IG~~vA~~L~~~--~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
...+|+|+|. |.+|+.+.+.|. . + ..++.......... ..+...+ ....+.. .+. +.+.++|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~hP~~~l~~las~rsaG---------k~~~~~~-~~~~v~~-~~~-~~~~~~D~ 72 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAG---------KKVTFEG-RDYTVEE-LTE-DSFDGVDI 72 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHH-hCCCCcceEEEEEccCCCC---------CeeeecC-ceeEEEe-CCH-HHHcCCCE
Confidence 4568999998 999999999884 4 3 23443332221110 0011111 1111111 122 44589999
Q ss_pred EEEccCCCccccccccHHHHhc-CCCCcEEEEcC
Q 022672 148 ISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS 180 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~-mk~gailIN~a 180 (294)
|++++|.. .+. +.... .+.|+.+|+.|
T Consensus 73 vf~a~p~~-~s~-----~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 73 ALFSAGGS-ISK-----KFGPIAVDKGAVVVDNS 100 (344)
T ss_pred EEECCCcH-HHH-----HHHHHHHhCCCEEEECC
Confidence 99999932 223 22222 25688999988
No 431
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=92.76 E-value=0.64 Score=43.55 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=58.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~ 149 (294)
..|.++.|.|.|.+|..+++. ++..|++|++.+........ ....+ +.... .......+.++....|+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~~~-~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKREE-ALEHL-------GADDYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHHHH-HHHhc-------CCcEEecCCChHHHHHhcCCCcEEE
Confidence 367899999999999999987 58999998888765543211 11111 11000 0000012333334578888
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
-+++.. .+ -...+..++++..++.++.
T Consensus 250 d~~g~~-~~----~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DTVPVF-HP----LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ECCCch-HH----HHHHHHHhccCCEEEEECC
Confidence 887621 11 1456778889998888864
No 432
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.73 E-value=0.47 Score=44.73 Aligned_cols=91 Identities=16% Similarity=0.356 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhhcCCCE---EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 72 KGQTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
.+.+|||||. |.+|+.+.+.|...-.++ +..+...... +..+.-.+ ....+.. .+.++ ++++|+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~sa---------Gk~~~~~~-~~l~v~~-~~~~~-~~~~Di 71 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSA---------GKTVQFKG-REIIIQE-AKINS-FEGVDI 71 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccC---------CCCeeeCC-cceEEEe-CCHHH-hcCCCE
Confidence 3468999998 999999999985233444 4333322111 00010111 1222222 23344 488999
Q ss_pred EEEccCCCccccccccHHHHhc-CCCCcEEEEcC
Q 022672 148 ISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS 180 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~-mk~gailIN~a 180 (294)
+++++|. ..+ +++... .+.|+.+|+.|
T Consensus 72 vf~a~~~-~~s-----~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 72 AFFSAGG-EVS-----RQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred EEECCCh-HHH-----HHHHHHHHHCCCEEEECc
Confidence 9999983 222 333222 35789999987
No 433
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.69 E-value=0.19 Score=40.44 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 107 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~ 107 (294)
.++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 579999999999999999985 5676 788888653
No 434
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.69 E-value=0.77 Score=42.75 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=31.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
.|.+|.|+|.|.||..+++. ++..|.+|++.+++...
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~-a~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQT-AKAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEcCCHHH
Confidence 48899999999999999987 47899999998876543
No 435
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.68 E-value=0.65 Score=42.62 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=31.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 107 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~ 107 (294)
..|...+|.|+|+|.+|.++|+.|+ ..|+ ++..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence 3588999999999999999999985 5676 588888653
No 436
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.64 E-value=0.48 Score=43.59 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=58.9
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--H-----------HHH-HhhhhhhhhhcCCCCcccc----cc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-----------EKF-VTAYGQFLKANGEQPVTWK----RA 135 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~-----------~~~-~~~~~~~~~~~~~~~~~~~----~~ 135 (294)
+|.|||+|.+|.++++.|+ ..|+ ++...|...-.. + .+. .+...+.+.... ...... ..
T Consensus 1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-p~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-PGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC-CCCEEEEEeccc
Confidence 4899999999999999985 4555 677777432100 0 000 000011111111 111111 11
Q ss_pred -CCHHHHhhcCCEEEEccCCCccccccccHHHHhcC-----CCCcEEEEcCCCc
Q 022672 136 -SSMDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP 183 (294)
Q Consensus 136 -~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~m-----k~gailIN~aRG~ 183 (294)
..-++++++.|+|+.++- +.+++..+++...... +.+.-+|..+..+
T Consensus 79 ~~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 79 QDKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred CchhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 122578899999999886 4667778877655543 2345577776433
No 437
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.63 E-value=1.1 Score=43.37 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=73.1
Q ss_pred CEEEEEcCChHHH-HHHHHHhh---cCC-CEEEEEcCC-chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 74 QTVGVIGAGRIGS-AYARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 74 ktvGIIGlG~IG~-~vA~~L~~---~~g-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
.+|.|||.|..-. .+.+-|++ .+. -+++.+|.. +... +. .....+.+......+..+....++++.+++||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl-~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKL-EI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 4799999999733 22333322 244 689999987 4432 11 111122222333334555667899999999999
Q ss_pred EEEccCCCccccccccH---------------------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672 148 ISLHPVLDKTTYHLINK---------------------------------ERLATMKKEAILVNCSRGPVIDEVALVEHL 194 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~---------------------------------~~l~~mk~gailIN~aRG~~vd~~aL~~aL 194 (294)
|+++.-.........+. +.+....|+++++|.+..--+-..++.+..
T Consensus 79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~ 158 (419)
T cd05296 79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT 158 (419)
T ss_pred EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence 98876432211100111 122334589999999887666666666555
Q ss_pred HcCCcceEE
Q 022672 195 KQNPMFRVG 203 (294)
Q Consensus 195 ~~g~i~ga~ 203 (294)
..++.|.+
T Consensus 159 -~~rviGlc 166 (419)
T cd05296 159 -GDRVIGLC 166 (419)
T ss_pred -cCCEEeeC
Confidence 44555553
No 438
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.62 E-value=0.36 Score=43.99 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.6
Q ss_pred CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
+..+.|+++.|.|. |.||+++|+.|+ ..|++|+..+++.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence 45788999999997 999999999984 67999999998754
No 439
>PRK12747 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.61 Score=40.98 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=28.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcC
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL 105 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~ 105 (294)
+.||++.|.|. |.||+++|+.| ...|++|+..+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence 46899999986 79999999998 478999987653
No 440
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.53 E-value=0.44 Score=44.19 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=55.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 151 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 151 (294)
.|.+|.|.|.|.+|...++. ++..|++|++.+++..+. + +.. +.+..... ...++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~-~-~a~-------~~Ga~~vi----~~~~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR-R-LAL-------ALGAASAG----GAYDTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH-H-HHH-------HhCCceec----cccccCcccceEEEEC
Confidence 48899999999999988876 588999999888775442 1 111 11211110 0000111245776666
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
... .+ .-...++.++++..++.++.
T Consensus 231 ~~~-~~----~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA-GG----LVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc-HH----HHHHHHHhhCCCcEEEEEec
Confidence 542 22 12567788888888887763
No 441
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.51 E-value=0.41 Score=41.88 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 107 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~ 107 (294)
.+.||++.|.|. |.||+.+|+.|+ ..|++|+..+++.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCch
Confidence 378999999998 899999999984 6799999988764
No 442
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.49 E-value=0.28 Score=35.54 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.0
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
++.|||-|.+|-.+|..| ..+|.+|+.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 588999999999999998 689999999887654
No 443
>PRK08324 short chain dehydrogenase; Validated
Probab=92.45 E-value=0.37 Score=49.47 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=34.3
Q ss_pred cccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 69 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 69 ~~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
..+.||++.|.| .|.||+.+|+.| ...|.+|+..+++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999998 5779999999987643
No 444
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.43 E-value=0.23 Score=40.99 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=25.0
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEE-EcC
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL 105 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~ 105 (294)
+|||+|+|+||+.+++.+...-++++.+ .|+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 7999999999999999864456888776 454
No 445
>PLN02427 UDP-apiose/xylose synthase
Probab=92.42 E-value=0.28 Score=46.44 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=33.2
Q ss_pred cCcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 67 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 67 ~g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.|+.+..++|.|.|. |-||+.+++.|.+.-|.+|+++|++..
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND 50 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch
Confidence 356678889999995 999999999984333689999987643
No 446
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.40 E-value=0.7 Score=43.52 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=24.9
Q ss_pred CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEc
Q 022672 74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD 104 (294)
Q Consensus 74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d 104 (294)
.+|+|+| .|.+|+.+.+.|...-.+++.++.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~ 35 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALA 35 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEE
Confidence 5899998 899999999998533456888773
No 447
>PRK14851 hypothetical protein; Provisional
Probab=92.32 E-value=0.35 Score=49.60 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=29.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcC
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL 105 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~ 105 (294)
..|++++|+|+|+|.+|..+|..|+ ..|+ ++..+|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcC
Confidence 4699999999999999999999985 5555 5666663
No 448
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.31 E-value=0.38 Score=45.16 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhhc-C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCE
Q 022672 72 KGQTVGVIGA-GRIGSAYARMMVEG-F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV 147 (294)
Q Consensus 72 ~gktvGIIGl-G~IG~~vA~~L~~~-~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi 147 (294)
.+.+|+|||. |-+|+.+.+.|... + ..++..+....+. +..+.-.+ .+..+ .++++. ++++|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa---------G~~~~~~~-~~~~v---~~~~~~~~~~~Dv 69 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA---------GETLRFGG-KSVTV---QDAAEFDWSQAQL 69 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC---------CceEEECC-cceEE---EeCchhhccCCCE
Confidence 4568999998 99999999998431 4 3465555332111 01111111 12211 244444 378999
Q ss_pred EEEccCCCccccccccHHHHhcC-CCCcEEEEcC
Q 022672 148 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS 180 (294)
Q Consensus 148 V~l~~Plt~~t~~li~~~~l~~m-k~gailIN~a 180 (294)
+++++|.. +..+....+ +.|+.+|+.|
T Consensus 70 vf~a~p~~------~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 70 AFFVAGRE------ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred EEECCCHH------HHHHHHHHHHHCCCEEEECC
Confidence 99999832 223333322 5689999998
No 449
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.21 E-value=0.32 Score=44.80 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=44.9
Q ss_pred CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEE
Q 022672 74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL 150 (294)
Q Consensus 74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l 150 (294)
++|.|.| .|.||+.+++.| ..-|.+|.+.+|+..... .. . ..+..- .......++.+.++.+|+|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~-~l-~-------~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKAS-FL-K-------EWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhh-hH-h-------hcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 4789999 499999999998 467999999887653311 00 0 000000 011123457788999999987
Q ss_pred ccC
Q 022672 151 HPV 153 (294)
Q Consensus 151 ~~P 153 (294)
+.+
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 654
No 450
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.19 E-value=0.48 Score=46.02 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=64.2
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhcCCEEEEc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLREADVISLH 151 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDiV~l~ 151 (294)
+|.|||+|..|.+.|+.| ...|.+|.++|............ .+...+. ....... ..+++.+.+.|.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~gi-~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEGI-TVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcCC-EEEECCccchhhhhHHhhcCCEEEEC
Confidence 589999999999999987 58899999999765432211000 0111110 0100000 1223567889998875
Q ss_pred cCCCcccc----------ccccHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672 152 PVLDKTTY----------HLINKE-RL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 152 ~Plt~~t~----------~li~~~-~l-~~mk~-gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
....++.. .++.+- .+ ..+++ ..+-|--+.|+.--..=|...|+.
T Consensus 76 ~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 76 PGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 54333211 122222 22 33333 345555567887777766666654
No 451
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.11 E-value=0.34 Score=44.98 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=58.7
Q ss_pred EEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCCEEE
Q 022672 75 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 149 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV~ 149 (294)
+|+|||. |.+|..+|-.|+. .+.-++..+|..... ....+ +.. ......... -+++.+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSH-IPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence 5899999 9999999987643 344589999986511 11111 111 111111221 123567899999999
Q ss_pred EccCCCc---cccc-cc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672 150 LHPVLDK---TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDE 187 (294)
Q Consensus 150 l~~Plt~---~t~~-li--~~-------~~l~~mk~gailIN~aRG~~vd~ 187 (294)
++.-... .++- ++ |. +.+..-.|++++|+++- .+|.
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 8875321 1111 11 11 12334468999999954 4553
No 452
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.09 E-value=0.39 Score=42.82 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=33.8
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.++.+|++.|.|. |.||+.+++.| ...|++|+..+++..
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~ 44 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQE 44 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 3588999999988 89999999998 478999999988754
No 453
>PLN02740 Alcohol dehydrogenase-like
Probab=92.08 E-value=0.99 Score=42.69 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA 108 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~ 108 (294)
-.|.+|.|+|.|.||...++. ++.+|+ +|++.++...
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~-ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEG-ARARGASKIIGVDINPE 234 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHCCCCcEEEEcCChH
Confidence 458899999999999999987 489999 6988887654
No 454
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=91.96 E-value=5.1 Score=37.04 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=45.7
Q ss_pred ccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 70 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 70 ~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+.|++|++||=+ ++.++.+..+ ..||++|....|..-...+.+.+.........+ ..+....++ +.++++|+|
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~-~a~~~aDvv 218 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGA-AILGATMTVICPPGHFPDGQIVAEAQELAAKSG---GKLVLTSDI-EAIEGHDAI 218 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CEEEEEcCH-HHHCCCCEE
Confidence 4789999999984 5667777776 579999999887542211111111000011111 122234565 568999999
Q ss_pred EEc
Q 022672 149 SLH 151 (294)
Q Consensus 149 ~l~ 151 (294)
..-
T Consensus 219 y~~ 221 (302)
T PRK14805 219 YTD 221 (302)
T ss_pred Eee
Confidence 763
No 455
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.95 E-value=2 Score=40.27 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=63.5
Q ss_pred CEEEEEcCChHHHHHHHHHhhc--CCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEE
Q 022672 74 QTVGVIGAGRIGSAYARMMVEG--FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI 148 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~~--~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV 148 (294)
-++||+|+|.|++-.++.|... -+..|++ +||+.+ +...|.+ +++.. ..+.+.+.|||++.. |+|
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~-~A~~fAq-------~~~~~--~~k~y~syEeLakd~~vDvV 76 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLE-RAKEFAQ-------RHNIP--NPKAYGSYEELAKDPEVDVV 76 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHH-HHHHHHH-------hcCCC--CCccccCHHHHhcCCCcCEE
Confidence 3699999999999999987322 2677765 566433 2223322 22221 234568999999766 899
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 022672 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM 199 (294)
Q Consensus 149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~i 199 (294)
.+..|. ++-..+ -...+. +...+|+.--=.--+ +.+.++++.+.+.+
T Consensus 77 yi~~~~-~qH~ev-v~l~l~--~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 77 YISTPN-PQHYEV-VMLALN--KGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred EeCCCC-ccHHHH-HHHHHH--cCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 988884 332222 122222 333466654322222 23346666666553
No 456
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.94 E-value=0.52 Score=45.15 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=49.7
Q ss_pred cCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 022672 71 LKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 140 (294)
Q Consensus 71 l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 140 (294)
..|++|+|+|+ ..-...+++.| ...|.+|.+|||...... ..+.....++++
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-----------------~~~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-----------------FFNSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-----------------hcCCeeeCCHHH
Confidence 47899999999 34567888887 689999999999743210 112345689999
Q ss_pred HhhcCCEEEEccC
Q 022672 141 VLREADVISLHPV 153 (294)
Q Consensus 141 ll~~aDiV~l~~P 153 (294)
.++.||.|++..-
T Consensus 356 ~~~~~~~~~~~~~ 368 (388)
T PRK15057 356 FKQQADVIISNRM 368 (388)
T ss_pred HHHhCCEEEEcCC
Confidence 9999999998764
No 457
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.94 E-value=0.59 Score=43.88 Aligned_cols=129 Identities=18% Similarity=0.272 Sum_probs=65.1
Q ss_pred CEEEEEcCChHHHHHHHHHhh-------cCC--CEEEEE-cCCchh------HHHHHHhhhhhhhhhcCCCCcccc----
Q 022672 74 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQAT------RLEKFVTAYGQFLKANGEQPVTWK---- 133 (294)
Q Consensus 74 ktvGIIGlG~IG~~vA~~L~~-------~~g--~~V~~~-d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---- 133 (294)
.+|+|+|+|.+|+.+++.|.+ .+| .+|.+. |++... ..++..+ + ....+ ....+.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~-~---~~~~~-~~~~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKE-V---KENFG-KLSNWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHH-h---hhccC-chhhcccccc
Confidence 479999999999999987643 145 666544 432110 0011000 0 00000 000000
Q ss_pred -ccCCHHHHh--hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcc-eEEeeCCC
Q 022672 134 -RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMF-RVGLDVFE 208 (294)
Q Consensus 134 -~~~~l~ell--~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~i~-ga~lDV~~ 208 (294)
...++++++ .++|+|+-+.+. +... .-..+.++.|.-+|-...|.+- ..++|.+..++.... .+.--|.-
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~~-~~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~ 152 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTND-KNAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMA 152 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCCc-HHHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccc
Confidence 012677887 589999977752 2111 2233455677777766665442 455666655444322 23333444
Q ss_pred CCCC
Q 022672 209 DEPY 212 (294)
Q Consensus 209 ~EP~ 212 (294)
.-|.
T Consensus 153 GiPi 156 (336)
T PRK08374 153 GTPI 156 (336)
T ss_pred cCCc
Confidence 4454
No 458
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.90 E-value=0.22 Score=48.26 Aligned_cols=115 Identities=20% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEE
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL 150 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l 150 (294)
.+-+++|+|+|.+|.++|+.| ...|++|.++|......... .+.... ....... ..+ .+.+.++|+|+.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~-------~l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~ 74 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLD-------TLAREF-PDVELRCGGFD-CELLVQASEIII 74 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHH-------HHHhhc-CCcEEEeCCCC-hHHhcCCCEEEE
Confidence 345899999999999999987 68999999999754321111 011100 0111111 113 344678998877
Q ss_pred ccCCCcccc----------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 151 HPVLDKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 151 ~~Plt~~t~----------~li~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
..--.++.. .++.+ +++ ..++...+-|--+.|+.--..-+...|+.
T Consensus 75 sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 75 SPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 653222211 22332 333 23343445555567887777767777764
No 459
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.88 E-value=0.5 Score=41.63 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.+.||++.|.|. |.||+.+|+.|+ ..|++|+..+++..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 478999999996 999999999984 67999999988754
No 460
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.87 E-value=0.87 Score=41.75 Aligned_cols=94 Identities=19% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHh-----hc
Q 022672 72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE 144 (294)
Q Consensus 72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell-----~~ 144 (294)
.|.+|.|.|. |.+|+.+++. ++..|++|++.+++.... +. .. ..+.... ......++.+.+ ..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiql-Ak~~G~~Vi~~~~s~~~~-~~-~~-------~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKV-AY-LK-------KLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-HH-HH-------HcCCCEEEeccccccHHHHHHHhCCCC
Confidence 5789999995 9999999987 589999999887765432 11 11 1111110 000011233322 13
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
.|+++-++.. + .+ ...++.++++..+|..+.
T Consensus 208 vdvv~d~~G~-~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNVGG-E----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECCCH-H----HH-HHHHHHhCcCcEEEEecc
Confidence 6777766641 1 12 566788888888888754
No 461
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.87 E-value=0.88 Score=41.98 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEE
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 149 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~ 149 (294)
-.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++.+.. +. ...+ +.... ........+++-...|+++
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~-~~-~~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKK-ED-ALKL-------GADEFIATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HHHc-------CCcEEecCcchhhhhhccCCceEEE
Confidence 3577999999999999999874 78999999988765432 11 1111 10000 0000001122234577887
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
-+.+.. ....+.++.++++..+|+++.
T Consensus 238 ~~~g~~-----~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 238 DTVSAS-----HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred ECCCCc-----chHHHHHHHhcCCCEEEEEec
Confidence 777632 112556677777777777754
No 462
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=91.82 E-value=3.2 Score=41.67 Aligned_cols=196 Identities=20% Similarity=0.185 Sum_probs=115.9
Q ss_pred CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672 16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 95 (294)
Q Consensus 16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~ 95 (294)
..|.+.|.-= +-+|--+++-+|+..|- .|..|.+.+|.|+|.|..|-.+|+.|...
T Consensus 288 ~~i~~FnDDi---QGTaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgigia~ll~~~ 343 (581)
T PLN03129 288 TTHLCFNDDI---QGTAAVALAGLLAALRA---------------------TGGDLADQRILFAGAGEAGTGIAELIALA 343 (581)
T ss_pred cCCCEecccc---chHHHHHHHHHHHHHHH---------------------hCCchhhceEEEECCCHHHHHHHHHHHHH
Confidence 4566665532 34555677878887762 23568999999999999999999987532
Q ss_pred ----CCC-------EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEEccCCCc
Q 022672 96 ----FKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDK 156 (294)
Q Consensus 96 ----~g~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~Plt~ 156 (294)
.|+ +++.+|+..- .+ .......|. ... ....+|.|+++. .|+++=+--
T Consensus 344 ~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa----~~~------~~~~~L~e~v~~vkptvLIG~S~--- 410 (581)
T PLN03129 344 MSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA----HDH------EPGASLLEAVKAIKPTVLIGLSG--- 410 (581)
T ss_pred HHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH----hhc------ccCCCHHHHHhccCCCEEEEecC---
Confidence 355 7888886631 00 111111111 111 123589999998 898876531
Q ss_pred cccccccHHHHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHcCC-cceEEeeCCCCCCCC-C---CCccCCCCeEE
Q 022672 157 TTYHLINKERLATMK---KEAILVNCSRGPVI---DEVALVEHLKQNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIV 225 (294)
Q Consensus 157 ~t~~li~~~~l~~mk---~gailIN~aRG~~v---d~~aL~~aL~~g~-i~ga~lDV~~~EP~~-~---~~L~~~~nvii 225 (294)
.-+.++++.++.|. +..++.=.|....- ..++.+++ .+|+ |.+.+. .-+|.. + ..--+..|+++
T Consensus 411 -~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGS---Pf~pv~~~Gr~~~p~Q~NN~~i 485 (581)
T PLN03129 411 -VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGS---PFDPVEYNGKTFHPGQANNAYI 485 (581)
T ss_pred -CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCC---CCCCeeeCCeeecCccccceee
Confidence 24789999999995 78899988876532 23333333 3355 332221 111211 0 11235689999
Q ss_pred ccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 022672 226 VPHIASA-----SKWTREGMATLAALNVLGKIK 253 (294)
Q Consensus 226 TPHia~~-----t~~~~~~~~~~~~~nl~~~~~ 253 (294)
-|=++-. ...-.+.|...+++-+..+..
T Consensus 486 FPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 486 FPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred ccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 9987632 111234555666666666543
No 463
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.78 E-value=0.46 Score=41.84 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.+.||++.|.|. |.||+++|+.|+ ..|.+|+..+++..
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~ 44 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLD 44 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence 478999999997 899999999984 78999999888654
No 464
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.76 E-value=0.92 Score=42.51 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=55.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLH 151 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~ 151 (294)
.+|+|+|. |-.|.++.++|+..-.+++..+..+.... ..+.+.+. . ..+....... ..+.+++ ..+||+||+|
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g-~~~~~~~p-~--l~g~~~l~~~-~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAG-KPVSDVHP-N--LRGLVDLPFQ-TIDPEKIELDECDVVFLA 77 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcC-CchHHhCc-c--cccccccccc-cCChhhhhcccCCEEEEe
Confidence 47999998 99999999998655577876665443110 01111000 0 0010111111 1233343 4569999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672 152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 186 (294)
Q Consensus 152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 186 (294)
+|.. ....++ . ..+.+|..+|+.|--==++
T Consensus 78 lPhg-~s~~~v-~---~l~~~g~~VIDLSadfR~~ 107 (349)
T COG0002 78 LPHG-VSAELV-P---ELLEAGCKVIDLSADFRLK 107 (349)
T ss_pred cCch-hHHHHH-H---HHHhCCCeEEECCcccccC
Confidence 9943 222222 2 2223566699998544344
No 465
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.75 E-value=0.68 Score=41.19 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=56.7
Q ss_pred EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCcccc----cc
Q 022672 75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTWK----RA 135 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~~----~~ 135 (294)
+|.|||.|.+|..+++.|+ ..|+ ++..+|...-.. +. .+ .+...+.+.... ...... ..
T Consensus 1 kVlvvG~GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n-p~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN-PNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC-CCCEEEEEeccC
Confidence 4899999999999999985 4555 566776542110 00 00 000011111111 111110 11
Q ss_pred ---CC-HHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 136 ---SS-MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 136 ---~~-l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
.+ -++++++.|+|+.++- +.+++..+++..... +.-+|+.+..
T Consensus 79 ~~~~~~~~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~---~iplI~~g~~ 125 (234)
T cd01484 79 GPEQDFNDTFFEQFHIIVNALD-NIIARRYVNGMLIFL---IVPLIESGTE 125 (234)
T ss_pred ChhhhchHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEccc
Confidence 11 2467899999999986 566777777766554 3347776543
No 466
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.73 E-value=0.47 Score=41.14 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.0
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
+.++++.|+|. |.||+.+++.|+ ..|.+|++.++++..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE 42 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence 56789999986 999999999985 579999999987543
No 467
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.72 E-value=0.48 Score=41.27 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=32.4
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 70 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 70 ~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.+.+|++.|.| .|.+|+.+++.|+ ..|++|++.+++..
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~ 41 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 46789999999 5999999999984 67999999988754
No 468
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.68 E-value=0.43 Score=44.60 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=58.7
Q ss_pred EEEEEcC-ChHHHHHHHHHhhc------CCCEEEEEcCCchhH-HHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhcC
Q 022672 75 TVGVIGA-GRIGSAYARMMVEG------FKMNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREA 145 (294)
Q Consensus 75 tvGIIGl-G~IG~~vA~~L~~~------~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~a 145 (294)
+|+|+|. |.+|+.++..|... .+.++..+|+..... ...... .+.... ..........++.+.+++|
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~----Dl~d~~~~~~~~~~~~~~~~~~l~~a 79 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVM----ELQDCAFPLLKSVVATTDPEEAFKDV 79 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceee----ehhhccccccCCceecCCHHHHhCCC
Confidence 6999999 99999999987421 224899999854211 111000 000000 0000111235677889999
Q ss_pred CEEEEccCCCcc---cc-ccc--cHH-------HHhcC-CCCcEEEEcCCCcccCHHH
Q 022672 146 DVISLHPVLDKT---TY-HLI--NKE-------RLATM-KKEAILVNCSRGPVIDEVA 189 (294)
Q Consensus 146 DiV~l~~Plt~~---t~-~li--~~~-------~l~~m-k~gailIN~aRG~~vd~~a 189 (294)
|+|+.+.-.... ++ .++ |.+ .+... +|++++|.++ ..+|.-.
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 999887654221 11 111 111 23333 5788888887 3454433
No 469
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=91.67 E-value=1.3 Score=40.89 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=31.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.|++|.|.|.|.+|+.+++. ++.+|.+|++.++...
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~-a~~~G~~vi~~~~~~~ 198 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQY-AAKMGFRTVAISRGSD 198 (333)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHCCCeEEEEeCChH
Confidence 57899999999999999987 4899999998887643
No 470
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=91.64 E-value=1.3 Score=42.89 Aligned_cols=127 Identities=9% Similarity=0.187 Sum_probs=72.9
Q ss_pred CEEEEEcCChH-HHHHHHHHhh---cC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672 74 QTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148 (294)
Q Consensus 74 ktvGIIGlG~I-G~~vA~~L~~---~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 148 (294)
.+|.|||.|.. ...+.+-|.+ .+ +-+|+.+|..+... +. .....+.+......+..+....++++.+++||||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 37999999985 1123333321 24 46899999876432 21 2222223333333455566778999999999999
Q ss_pred EEccCCCcc-----------ccccccH----------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672 149 SLHPVLDKT-----------TYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHLK 195 (294)
Q Consensus 149 ~l~~Plt~~-----------t~~li~~----------------------~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 195 (294)
+...--... -+|++.. +.+....|++++||.+..--+-..++.+...
T Consensus 79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~p 158 (425)
T cd05197 79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVP 158 (425)
T ss_pred EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhCC
Confidence 987653321 1111110 1223345899999998776565666666542
Q ss_pred cCCcceE
Q 022672 196 QNPMFRV 202 (294)
Q Consensus 196 ~g~i~ga 202 (294)
..++.|.
T Consensus 159 ~~rviG~ 165 (425)
T cd05197 159 PEKAVGL 165 (425)
T ss_pred CCcEEEE
Confidence 3344443
No 471
>PRK08589 short chain dehydrogenase; Validated
Probab=91.62 E-value=0.4 Score=42.96 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
.+.||++.|.|. |.||+++|+.|+ ..|++|+..+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence 378999999998 889999999984 679999999887
No 472
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.54 E-value=1.6 Score=42.24 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=63.6
Q ss_pred cCC-CEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCE
Q 022672 71 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 147 (294)
Q Consensus 71 l~g-ktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 147 (294)
+.+ ++|.|||+|..|.+.++.|.+..| ++|.++|......... .+.. .+... ...+. +.+.++|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~-------~l~~----g~~~~~g~~~~-~~~~~~d~ 71 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQE-------QLPE----DVELHSGGWNL-EWLLEADL 71 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHH-------Hhhc----CCEEEeCCCCh-HHhccCCE
Confidence 345 789999999999999998854444 8999999754321100 0111 11111 11133 34578998
Q ss_pred EEEccCCCcccc----------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672 148 ISLHPVLDKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 196 (294)
Q Consensus 148 V~l~~Plt~~t~----------~li~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~ 196 (294)
|+...--.+... .++.+ +++ ..++...+-|--+-|+.--..=|...|+.
T Consensus 72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 876653222211 12322 333 23443445555567887776666677754
No 473
>PRK07985 oxidoreductase; Provisional
Probab=91.54 E-value=0.74 Score=41.92 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=30.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
.+.||++.|.|. |.||+++|+.|+ ..|++|+..++.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~ 82 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLP 82 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCC
Confidence 378999999997 899999999984 679999887654
No 474
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.54 E-value=0.91 Score=42.70 Aligned_cols=95 Identities=23% Similarity=0.203 Sum_probs=57.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC-C----HHHHh--hc
Q 022672 73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVL--RE 144 (294)
Q Consensus 73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell--~~ 144 (294)
+.++.|+|.|.||...++. ++.+|. +|++.|+++... +...+. ........... + ..++- ..
T Consensus 169 ~~~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl-~~A~~~--------~g~~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERL-ELAKEA--------GGADVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCEEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-HHHHHh--------CCCeEeecCccccHHHHHHHHhCCCC
Confidence 3399999999999998776 478886 677788876542 211110 11111010101 1 11333 24
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182 (294)
Q Consensus 145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 182 (294)
+|+++-|.. .+.+. .+.++..+++..++.++-.
T Consensus 239 ~D~vie~~G-~~~~~----~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG-SPPAL----DQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC-CHHHH----HHHHHHhcCCCEEEEEecc
Confidence 999999987 22211 5677888999888888654
No 475
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=91.52 E-value=0.62 Score=42.93 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=50.2
Q ss_pred ccCCCEEEEEc---CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672 70 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146 (294)
Q Consensus 70 ~l~gktvGIIG---lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 146 (294)
.+.|++|+|+| .|+..++.++.| ..||++|..+.|..-...+...+. +...+ ..+......+|.++++|
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~D 226 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEAD 226 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCC
Confidence 49999999999 699999999998 689999999987643221111111 11111 11233456667999999
Q ss_pred EEEEc
Q 022672 147 VISLH 151 (294)
Q Consensus 147 iV~l~ 151 (294)
++.+.
T Consensus 227 Vl~~l 231 (316)
T COG0540 227 VLYML 231 (316)
T ss_pred EEEee
Confidence 99543
No 476
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.51 E-value=1.2 Score=41.62 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=55.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc-ccccCCHHHHhh-----
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLR----- 143 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~----- 143 (294)
-.|.+|.|.|. |.+|..+++. ++.+|++|++.+++.... +..... .+..... .....++.+.+.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k~-~~~~~~-------lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQKV-DLLKNK-------LGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHHH-HHHHHh-------cCCCEEEECCCcccHHHHHHHHCCC
Confidence 35889999999 9999999987 589999999887665432 111000 1111110 000113333222
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 180 (294)
..|+++-++. .. .-...++.++++..++.++
T Consensus 228 gvD~v~d~vG--~~----~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG--GD----MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC--HH----HHHHHHHHhccCCEEEEEC
Confidence 3677776654 11 1155677778887777764
No 477
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.46 E-value=0.45 Score=40.82 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=48.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
++|+|||. |.+|+.+++-. +.-|.+|+++-|++.+.... +. ......+....+++.+.+..-|+|+.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA-~~RGHeVTAivRn~~K~~~~--~~-------~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEA-LKRGHEVTAIVRNASKLAAR--QG-------VTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCchhHHHHHHHH-HhCCCeeEEEEeChHhcccc--cc-------ceeecccccChhhhHhhhcCCceEEEec
Confidence 57999998 99999999984 78899999988876553210 00 0001111223345667889999998876
Q ss_pred CCC
Q 022672 153 VLD 155 (294)
Q Consensus 153 Plt 155 (294)
-..
T Consensus 71 ~~~ 73 (211)
T COG2910 71 GAG 73 (211)
T ss_pred cCC
Confidence 543
No 478
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.43 E-value=0.59 Score=43.65 Aligned_cols=108 Identities=18% Similarity=0.304 Sum_probs=58.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHhh-cCCCE-EEEEc-CCchhHH-HHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCC
Q 022672 73 GQTVGVIGA-GRIGSAYARMMVE-GFKMN-LIYYD-LYQATRL-EKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREAD 146 (294)
Q Consensus 73 gktvGIIGl-G~IG~~vA~~L~~-~~g~~-V~~~d-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aD 146 (294)
+++|||+|. |.+|+.+.++|.. .|-+. +..+. .+..... ..| ......... ..+. ..++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f-----------~~~~~~v~~~~~~~-~~~~~~D 68 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEF-----------GGKSIGVPEDAADE-FVFSDVD 68 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccc-----------cCccccCccccccc-cccccCC
Confidence 368999976 9999999999865 56665 33332 2211110 111 000011100 0111 2356899
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC---C--------cccCHHHHHHHHHcC
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR---G--------PVIDEVALVEHLKQN 197 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR---G--------~~vd~~aL~~aL~~g 197 (294)
+++.|.|.. .++.+. . +..+.|+++|+-+. - .-|+.++|.+..+.|
T Consensus 69 ivf~~ag~~-~s~~~~--p--~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg 125 (334)
T COG0136 69 IVFFAAGGS-VSKEVE--P--KAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRG 125 (334)
T ss_pred EEEEeCchH-HHHHHH--H--HHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhhCC
Confidence 999999842 222211 1 22356777777663 1 247778887777755
No 479
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=91.37 E-value=0.5 Score=45.52 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=48.8
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672 69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147 (294)
Q Consensus 69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 147 (294)
..+.||++.|.|. |.||+++|+.| ...|++|+..+++.....+.. .... . .......+....+++.+.+.+.|+
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~~-~~~~--~-~v~~v~~Dvsd~~~v~~~l~~IDi 248 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLEI-NGED--L-PVKTLHWQVGQEAALAELLEKVDI 248 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHH-hhcC--C-CeEEEEeeCCCHHHHHHHhCCCCE
Confidence 3578999999998 89999999998 467999999987654321111 0000 0 000000111112345566788999
Q ss_pred EEEccC
Q 022672 148 ISLHPV 153 (294)
Q Consensus 148 V~l~~P 153 (294)
++.+..
T Consensus 249 LInnAG 254 (406)
T PRK07424 249 LIINHG 254 (406)
T ss_pred EEECCC
Confidence 887653
No 480
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.36 E-value=1.9 Score=41.29 Aligned_cols=113 Identities=19% Similarity=0.114 Sum_probs=58.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhc--CC----CEEEEE--cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEG--FK----MNLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~--~g----~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 144 (294)
.+|+|||. |.+|..+|-.|+.+ ++ ..+..+ |...+.......+-... ..... . ......+-.+.+++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~-a~~~~-~--~v~i~~~~y~~~kd 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDS-LYPLL-R--EVSIGIDPYEVFED 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHh-hhhhc-C--ceEEecCCHHHhCC
Confidence 47999999 99999999876432 23 134444 66554432222221100 00000 0 11111234477899
Q ss_pred CCEEEEccCCC--c-cccc--------cc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022672 145 ADVISLHPVLD--K-TTYH--------LI---NKERLATMKKEAILVNCSRGPVIDEVALVE 192 (294)
Q Consensus 145 aDiV~l~~Plt--~-~t~~--------li---~~~~l~~mk~gailIN~aRG~~vd~~aL~~ 192 (294)
||+|+++.-.. + +++- ++ ....-+.-+|++++|.++ ..+|.-..+-
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~ 180 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIA 180 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHH
Confidence 99999876431 1 1221 11 111222244888998886 5566555443
No 481
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.36 E-value=1.3 Score=41.11 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=30.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchh
Q 022672 72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 109 (294)
Q Consensus 72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~ 109 (294)
.|++|.|.|.|.+|...++. ++.+|.+ |++.+++...
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~-a~~~G~~~v~~~~~~~~~ 197 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQC-AVALGAKSVTAIDINSEK 197 (347)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHH
Confidence 57899999999999999987 4889997 6778776543
No 482
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.31 E-value=0.75 Score=43.72 Aligned_cols=107 Identities=20% Similarity=0.282 Sum_probs=57.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCCCE---EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 149 (294)
.+|||||. |.+|+.+.+++...-... +..+....... . ...-...........+. +.++++|+++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~--~--------~~~f~g~~~~v~~~~~~-~~~~~~Divf 70 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGG--A--------APSFGGKEGTLQDAFDI-DALKKLDIII 70 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCC--c--------ccccCCCcceEEecCCh-hHhcCCCEEE
Confidence 47999998 999999998444544454 55554432111 0 00001111111111223 3458899999
Q ss_pred EccCCCccccccccHHHHhcC-CCC--cEEEEcC---CCc--------ccCHHHHHHHHHcC
Q 022672 150 LHPVLDKTTYHLINKERLATM-KKE--AILVNCS---RGP--------VIDEVALVEHLKQN 197 (294)
Q Consensus 150 l~~Plt~~t~~li~~~~l~~m-k~g--ailIN~a---RG~--------~vd~~aL~~aL~~g 197 (294)
+++|. ..+ ++....+ +.| +++|+.| |-. =|+.++|..+.+.|
T Consensus 71 ~a~~~-~~s-----~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g 126 (369)
T PRK06598 71 TCQGG-DYT-----NEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANG 126 (369)
T ss_pred ECCCH-HHH-----HHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcC
Confidence 99983 222 2222222 457 6788887 422 25566666544444
No 483
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.30 E-value=0.55 Score=41.37 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
.+.|+++.|.|. |.||+.+|+.|+ ..|++|+..++....
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~-~~G~~v~~~~r~~~~ 43 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLA-EEGAIPVIFGRSAPD 43 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHH-HcCCcEEEEcCChhh
Confidence 588999999995 789999999984 789999888776543
No 484
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.23 E-value=1.3 Score=41.77 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 109 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~ 109 (294)
-.|.+|.|+|.|.||...++. ++.+|+ +|++.+++...
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 357899999999999999987 589999 79988876543
No 485
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=91.17 E-value=1.3 Score=40.81 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=65.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHhhcCCCE-EEEEcCC--chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CC
Q 022672 73 GQTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--AD 146 (294)
Q Consensus 73 gktvGIIGl-G~IG~~vA~~L~~~~g~~-V~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aD 146 (294)
..+|.|.|. |.+|+.+.+.| ..+|.+ ++..+|. ... -.+...+.+++|+-.. .|
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l-~~~g~~~v~pVnp~~~~~~-------------------v~G~~~y~sv~dlp~~~~~D 67 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQM-LAYGTNIVGGVTPGKGGTT-------------------VLGLPVFNTVAEAVEATGAN 67 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHH-HHCCCCEEEEECCCCCCCe-------------------EeCeeccCCHHHHhhccCCC
Confidence 346899998 88999999987 466664 4456765 211 1223446789998887 89
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 201 (294)
Q Consensus 147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g 201 (294)
+.++++|. +.+...+ ++..+.=-+.++++..+- ..-++..|.+..+++.++-
T Consensus 68 lAvi~vp~-~~v~~~l-~e~~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girv 119 (291)
T PRK05678 68 ASVIYVPP-PFAADAI-LEAIDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRL 119 (291)
T ss_pred EEEEEcCH-HHHHHHH-HHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEE
Confidence 99999993 3334433 333332223444444433 3333447888888776553
No 486
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.16 E-value=1.8 Score=40.17 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=57.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC----HHHHhh--
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR-- 143 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~-- 143 (294)
-.|++|.|.|.|.+|+.+++.+ +..|+ +|++.+++.... +. ...+ +....-.....+ +.++..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARR-EL-AEEL-------GATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEECCCccCHHHHHHHHhCCC
Confidence 3578999999999999999874 89999 788887665432 11 1111 110000000112 223332
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672 144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181 (294)
Q Consensus 144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 181 (294)
..|+++-+... +.+ -.+.+..|+++..++.++.
T Consensus 241 ~~d~vid~~g~-~~~----~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 241 GVDVSFDCAGV-QAT----LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCEEEECCCC-HHH----HHHHHHhccCCCEEEEEcc
Confidence 37888887752 111 1456777888888888754
No 487
>PRK09186 flagellin modification protein A; Provisional
Probab=91.15 E-value=0.69 Score=40.58 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 109 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 109 (294)
+.||++.|.|. |.||+.+|+.| ..-|++|++.+++...
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l-~~~g~~v~~~~r~~~~ 40 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAI-LEAGGIVIAADIDKEA 40 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecChHH
Confidence 56899999997 89999999998 4779999998876543
No 488
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.14 E-value=0.7 Score=40.84 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.+.||++.|.|. |.||+++|+.|+ ..|++|++.+++..
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~-~~G~~V~~~~r~~~ 42 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFA-AEGCHLHLVARDAD 42 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 467899999998 789999999984 67999999988754
No 489
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.13 E-value=1.3 Score=40.94 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=31.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
-.|.+|.|.|. |.+|+.+++. ++.+|++|++.+++..
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~ 187 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDE 187 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHH
Confidence 35889999998 9999999987 5899999988776644
No 490
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.10 E-value=0.65 Score=40.56 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=28.9
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 71 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
+.++++-|.| .|.||+.+|++|+ ..|++|++..++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~-~~g~~v~~~~~~ 39 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALA-QEGAKVVINYNS 39 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEcCC
Confidence 6789999998 5999999999984 689998875443
No 491
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=91.06 E-value=0.74 Score=43.22 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=22.9
Q ss_pred EEEEEcCChHHHHHHHHHhh-cC--CCEEEEEc
Q 022672 75 TVGVIGAGRIGSAYARMMVE-GF--KMNLIYYD 104 (294)
Q Consensus 75 tvGIIGlG~IG~~vA~~L~~-~~--g~~V~~~d 104 (294)
+|||.|+|+||+.+.|.|.. .| ..++++.+
T Consensus 3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvain 35 (336)
T PRK13535 3 RVAINGFGRIGRNVLRALYESGRRAEITVVAIN 35 (336)
T ss_pred EEEEECcCHHHHHHHHHHHhcCCCCceEEEEec
Confidence 79999999999999998643 23 46666554
No 492
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.02 E-value=0.75 Score=48.23 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=66.7
Q ss_pred CEEEEEcCChHHHHH-HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672 74 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 152 (294)
Q Consensus 74 ktvGIIGlG~IG~~v-A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 152 (294)
+++.|+|+|..|.+. |+.| +..|++|.++|.......+. +...+ +.+.. ..-.+.+.++|+|+...
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~g---i~~~~-g~~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKG---ARFFL-GHQEEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCC---CEEeC-CCCHHHcCCCCEEEECC
Confidence 369999999999998 9987 68999999999765332221 11111 11111 11235567899988765
Q ss_pred CCCcccc----------ccccH-HHHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672 153 VLDKTTY----------HLINK-ERLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 198 (294)
Q Consensus 153 Plt~~t~----------~li~~-~~l~~-mk~-gailIN~aRG~~vd~~aL~~aL~~g~ 198 (294)
.-.+++. .++.+ +++.. ++. ..+-|--+.|+.--..=+...|++..
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 4333222 22332 23223 332 34556667788877777777776633
No 493
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.02 E-value=0.8 Score=41.98 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=32.9
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
.++.||++.|.|. |.||+.+|+.|+ ..|++|+..++...
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~-~~Ga~Vv~~~~~~~ 47 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLA-RLGATVVVNDVASA 47 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEecCCch
Confidence 4689999999987 789999999984 67999999887543
No 494
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=90.96 E-value=5.9 Score=39.63 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=114.5
Q ss_pred cEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhh---
Q 022672 18 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE--- 94 (294)
Q Consensus 18 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~--- 94 (294)
|.+.|.-= +-+|--+++-+|+..|- .|..|.+.+|.|.|.|..|-.+|+.|..
T Consensus 266 i~~FnDDi---QGTaaV~lAgll~Alr~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~ 321 (559)
T PTZ00317 266 YRCFNDDI---QGTGAVIAAGFLNALKL---------------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAA 321 (559)
T ss_pred CCEecccc---hhHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHH
Confidence 55555432 33556677888887772 2356899999999999999999998742
Q ss_pred cCCC-------EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCCcccc
Q 022672 95 GFKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTY 159 (294)
Q Consensus 95 ~~g~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~Plt~~t~ 159 (294)
..|. +++.+|+..- .+ .......|. ....... .....+|.|+++.. |+++=+- ..-
T Consensus 322 ~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S----~~~ 392 (559)
T PTZ00317 322 EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGLS----GVG 392 (559)
T ss_pred HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEec----CCC
Confidence 2466 7888886521 00 111111111 1000000 00135899999998 8887543 235
Q ss_pred ccccHHHHhcCCC---CcEEEEcCCCcccC---HHHHHHHHHcCC-cceEEeeCCCCCCCC-C---CCccCCCCeEEccC
Q 022672 160 HLINKERLATMKK---EAILVNCSRGPVID---EVALVEHLKQNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPH 228 (294)
Q Consensus 160 ~li~~~~l~~mk~---gailIN~aRG~~vd---~~aL~~aL~~g~-i~ga~lDV~~~EP~~-~---~~L~~~~nviiTPH 228 (294)
+.|+++.++.|.+ ..++.=.|+...-- .++.+++ .+|+ |.+.+. .-+|.. + ..--+..|+++-|=
T Consensus 393 g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~-T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~iFPG 468 (559)
T PTZ00317 393 GVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW-TNGRAIVASGS---PFPPVTLNGKTIQPSQGNNLYVFPG 468 (559)
T ss_pred CCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh-ccCCEEEEECC---CCCCcccCCeeeccCcCcceeeccc
Confidence 7899999999974 89999898876422 3333332 2444 333332 112221 1 11235679999998
Q ss_pred CCCC-----cHHHHHHHHHHHHHHHHHHH
Q 022672 229 IASA-----SKWTREGMATLAALNVLGKI 252 (294)
Q Consensus 229 ia~~-----t~~~~~~~~~~~~~nl~~~~ 252 (294)
++-. .....+.|...+++-+.++.
T Consensus 469 iglG~l~~~a~~Itd~m~~aAA~aLA~~v 497 (559)
T PTZ00317 469 VGLGCAIAQPSYIPDEMLIAAAASLATLV 497 (559)
T ss_pred hhhhhHhhcccCCCHHHHHHHHHHHHhhC
Confidence 7621 11123445555566665554
No 495
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.95 E-value=0.32 Score=42.08 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=31.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672 69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 106 (294)
Q Consensus 69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~ 106 (294)
..|++++|.|+|+|.+|.++++.|+ ..|+ ++..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 4689999999999999999999985 5677 47778755
No 496
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.90 E-value=1.2 Score=40.74 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=57.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HH--hhcC
Q 022672 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA 145 (294)
Q Consensus 71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~a 145 (294)
..|.+|.|+|.|.+|+.+++.+ +..|++ |++.+++.... +.. ..+ +....-.....+.. .. -...
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~-~~~-~~~-------g~~~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKL-ELA-KKL-------GATETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH-HHH-HHh-------CCeEEecCCCCCHHHHHHhcCCCC
Confidence 3578999999999999999874 899997 78787765432 111 111 10000000001111 11 1457
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672 146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183 (294)
Q Consensus 146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 183 (294)
|+++-+.+.. ....+.+..|+++..+|.++..+
T Consensus 228 d~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 228 DVVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred cEEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence 8888776521 12255667788888888886544
No 497
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.90 E-value=0.69 Score=42.96 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=57.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc--c-CCHHHHhhcCCE
Q 022672 74 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV 147 (294)
Q Consensus 74 ktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDi 147 (294)
.+|+|||. |.+|.++|-.|+ ..+ -++..+|.. ... ....+ +.... ....... . +++.+.+++||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~-g~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTP-GVAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-ccc-eeehH-----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence 47999999 999999998763 334 478999986 211 11111 11111 1111221 1 245677899999
Q ss_pred EEEccCCC--c-ccccc-c--cH-------HHHhcCCCCcEEEEcCCC
Q 022672 148 ISLHPVLD--K-TTYHL-I--NK-------ERLATMKKEAILVNCSRG 182 (294)
Q Consensus 148 V~l~~Plt--~-~t~~l-i--~~-------~~l~~mk~gailIN~aRG 182 (294)
|+++.-.. + ++|-- + |. +.+....|++++|+++-.
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 98876532 1 12211 1 11 223444689999999653
No 498
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.87 E-value=0.8 Score=44.58 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=31.7
Q ss_pred CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
|..-.+++|.|.|. |-||+.+++.| ...|.+|++.|+.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~L-l~~G~~V~~ld~~ 152 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRL-MARGDSVIVVDNF 152 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHH-HHCcCEEEEEeCC
Confidence 33446799999995 99999999998 5779999998864
No 499
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.86 E-value=0.59 Score=41.08 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672 71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 108 (294)
Q Consensus 71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~ 108 (294)
+.+|++.|.|. |.||+++|+.|+ ..|++|+..+++..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~-~~G~~V~~~~r~~~ 40 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAA-RAGADVVLAARTAE 40 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 67899999986 899999999984 78999999998764
No 500
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.84 E-value=0.67 Score=40.95 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672 70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 106 (294)
Q Consensus 70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~ 106 (294)
.+.||++.|.|. |.||+.+|+.|+ ..|++|+..++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALA-KAGADIIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCC
Confidence 588999999998 899999999984 789999988776
Done!