RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022672
(294 letters)
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 299 bits (767), Expect = e-101
Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 18/264 (6%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
++G++++D++A GI VGN P +T TAE+A L L +ARR E ++ +R + G
Sbjct: 74 YSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPG 133
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P VG L +T+G+ G G IG A A+ +GF M++ Y+D ++
Sbjct: 134 WEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR------------- 179
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
++ E S+D +L + SL+ T + NK + ++ + AI+VN +
Sbjct: 180 -ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
RG ++D +V L+ + G DVF EP + G ++ N + PHI SA+ RE M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
A A + G + +
Sbjct: 299 AHQANDLIDALFGGADM---SYAL 319
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 294 bits (754), Expect = 2e-99
Identities = 113/278 (40%), Positives = 161/278 (57%), Gaps = 24/278 (8%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG---- 56
AVGY+N+D+ A K GI V NTP VLT+ TA+LA +L LA AR +V+ D F+R+G
Sbjct: 74 YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 57 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
W P F+G + G+T+G+IG GRIG A A+ +GF M ++YY + +E+ +
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVERELN 192
Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
A ++++LRE+D + L L + TYHLIN+ERL MKK AIL
Sbjct: 193 A----------------EFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236
+N +RG V+D ALV+ LK+ + GLDVFE+EPY L ++ N ++ PHI SAS
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 237 REGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 274
REGMA L A N++ +G P V + + +P
Sbjct: 297 REGMAELVAKNLIAFKRGEIP---PTLVNREVIKIRKP 331
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 291 bits (746), Expect = 5e-98
Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 20/264 (7%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
++VGY+++D+ AA GI V +TP VL++ AE+A L L A RR EAD +R+G + G
Sbjct: 101 LSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPG 160
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P +G L G+ +G+ G GRIG A A GF + + Y++ + + + Y
Sbjct: 161 WGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALEEGAIY-- 217
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
++D +L +D+ + ++ +R+A + + A+++N S
Sbjct: 218 --------------HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
RG +I++ AL+E L+ +F GLDVF +EP + P + N + PHI SA+ TR+ M
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAM 323
Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
L + + N +
Sbjct: 324 GWLLIQGIEALNQSDVP---DNLI 344
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 290 bits (744), Expect = 5e-98
Identities = 90/265 (33%), Positives = 132/265 (49%), Gaps = 20/265 (7%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
M+VG +++ ++ K GI VG TP VLT+TTAELA SL L RR+ EA E ++ G +
Sbjct: 83 MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS 142
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P G L TVG+IG GRIG A AR + F + Y + +
Sbjct: 143 WKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGVQRFLYT--GRQPRPEEAAEFQ- 198
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
S E+ ++D I + L T L NK+ MK+ A+ +N S
Sbjct: 199 ------------AEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREG 239
RG V+++ L + L + GLDV EP L +KN +++PHI SA+ TR
Sbjct: 247 RGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNT 306
Query: 240 MATLAALNVLGKIKGYPIWGNPNQV 264
M+ LAA N+L ++G P+ P+++
Sbjct: 307 MSLLAANNLLAGLRGEPM---PSEL 328
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 284 bits (728), Expect = 8e-96
Identities = 109/265 (41%), Positives = 154/265 (58%), Gaps = 27/265 (10%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
+VG ++VD+ AA + GI V +TPGVLTE TA+L +L LA ARR+VE + R GL+
Sbjct: 72 YSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKA 131
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P L +G L+G T+G++G GRIG A A+ F M ++Y+ R K
Sbjct: 132 WHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA-----RTPK------- 178
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
P + S++E+L+EADV+SLH L T+ L+N+ERL MK+ AIL+N +
Sbjct: 179 ------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA 229
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239
RG ++D ALVE L+ +F GLDV + EP L + NA++ PHI SA + TRE
Sbjct: 230 RGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRER 288
Query: 240 MATLAALNVLGKIKGYPIWGNPNQV 264
MA +A N+L ++G PN V
Sbjct: 289 MAEVAVENLLAVLEGREP---PNPV 310
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 283 bits (726), Expect = 4e-95
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
G++ +D++A N+ G+A N+ G T++LA L L+ R ++ R G +
Sbjct: 87 AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 61 WLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
+ + +G +G +G G I AR V G M L+YYD+
Sbjct: 147 FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP--------- 197
Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK + +
Sbjct: 198 -----ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRI 252
Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236
VN +RGPVI + AL+ LK + GLDV E EP + L EMK+ + HI + T
Sbjct: 253 VNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIET 312
Query: 237 REGMATLAALNVLGKIKG 254
L N+ +
Sbjct: 313 FHEFERLTMTNIDRFLLQ 330
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 275 bits (706), Expect = 3e-92
Identities = 86/272 (31%), Positives = 127/272 (46%), Gaps = 28/272 (10%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
G++N DV+A G+ + P +LT TAELA L++ R + AD F+R+G + G
Sbjct: 74 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG 133
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
W P F G L TVG +G G IG A A + G+ L Y++
Sbjct: 134 WQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQYHEAKA------------- 178
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
L EQ + ++ + E+ +D I L L+ T HL+N E LA ++ A+LVN
Sbjct: 179 -LDTQTEQRLGLRQVA-CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASA 232
RG V+DE A++ L++ + DVFE E + + P L N + PHI SA
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA 296
Query: 233 SKWTREGMATLAALNVLGKIKGYPIWGNPNQV 264
+ R + AA N+L + G N V
Sbjct: 297 VRAVRLEIERCAAQNILQALAGERP---INAV 325
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 264 bits (676), Expect = 1e-87
Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 24/264 (9%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
VG + VD+ A + I V TPGVL + A+L +L LA RR+ + D +R G +
Sbjct: 100 NGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAA 159
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
L +G+ KG+ +GV+G G+IG A A E F M++ Y++ R
Sbjct: 160 G-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGMSVRYWN-----RSTL------- 205
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
V W S ++ R++DV+++ T ++++ L + E I+VN +
Sbjct: 206 -------SGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVA 258
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
RG V+DE AL+E LK + GLDVF +EP ++ N +++PH SA+ TR M
Sbjct: 259 RGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAM 318
Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
L N+ G PN V
Sbjct: 319 GKLVLANLAAHFAGEKA---PNTV 339
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 263 bits (675), Expect = 2e-87
Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 25/268 (9%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
+ GY+N+D+ A K GI V G+L+E AE L + R+I AD+F+R G ++
Sbjct: 71 HSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES 130
Query: 61 WLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
L G+ VG++G G IG A AR + F + L Y+ ++ +EK + A
Sbjct: 131 HAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVEKELKA 189
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
R +DE+L ++D++ L L + TYH+IN+ER+ ++ LV
Sbjct: 190 ----------------RYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEG-KYLV 232
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-SEMKNAIVVPHIASASKWT 236
N RG ++DE A+ E +KQ + DVFE EP + L ++ PH A +
Sbjct: 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEA 292
Query: 237 REGMATLAALNVLGKIKGYPIWGNPNQV 264
+E + A N+L ++G + V
Sbjct: 293 QEDVGFRAVENLLKVLRGEVP---EDLV 317
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 260 bits (666), Expect = 4e-86
Identities = 82/264 (31%), Positives = 128/264 (48%), Gaps = 25/264 (9%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
+VG + VD+ + G+ V NTP VLT+ A+LA L LA RRI E D+++R G +
Sbjct: 94 FSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF 153
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
+ + G+ VG+IG GRIG A A E F + Y+ R +K
Sbjct: 154 G--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISYFS-----RSKK------- 198
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
+ S+ E+ +D++ + L T H+IN+E + + + +L+N
Sbjct: 199 -------PNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIG 251
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
RGP +DE LV L + + GLDVFE EP + L ++N +++PH+ S + TR+ M
Sbjct: 252 RGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVM 311
Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
A L N+ G P+ V
Sbjct: 312 ADLVVGNLEAHFSGKPL---LTPV 332
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 254 bits (651), Expect = 3e-84
Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 33/270 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
+ G +++ + + V G + AE A +L LA +RI++ E M+ G Y
Sbjct: 57 VTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR 115
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
+ L++G+ V V+G G IG+ +++ + +
Sbjct: 116 DVE----IPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTPK------------ 158
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
W+ +S++E LREA L+K T L+ + LA M ++A+ VN
Sbjct: 159 --------EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 210
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR- 237
R V+D ++ LK+ P F DV+ + N + P +A R
Sbjct: 211 RAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERV 270
Query: 238 -EGMATLAALNVLGKIKGYPIWGNPNQVEP 266
M A N++ G N +
Sbjct: 271 WRQMVMEAVRNLITYATGGRP---RNIAKR 297
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 254 bits (651), Expect = 1e-83
Identities = 79/270 (29%), Positives = 125/270 (46%), Gaps = 22/270 (8%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL--- 57
+ G++N+D+ +A GIAV N P E TA+ L RR + +R G
Sbjct: 92 IGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQ 151
Query: 58 -YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
+ ++G+T+G+IG GR+G A A + F N+++YD Y
Sbjct: 152 SVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYDPY---------- 200
Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
L E+ + +R S++ ++L +D ++LH L++ +HLIN + M++ A L
Sbjct: 201 -----LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL 255
Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 234
VN +RG ++DE AL + LK+ + LDV E EP+ L + N I PH A S+
Sbjct: 256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE 315
Query: 235 WTREGMATLAALNVLGKIKGYPIWGNPNQV 264
M AA + I G N V
Sbjct: 316 QASIEMREEAAREIRRAITGRIPDSLKNCV 345
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 249 bits (638), Expect = 3e-81
Identities = 59/265 (22%), Positives = 111/265 (41%), Gaps = 20/265 (7%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
+G ++VD+ +A + V + + AE + L+ R + + E+ R G ++
Sbjct: 120 AGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN- 178
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
+ L+ VG + AGRIG A R + F ++L Y D ++
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR------------- 224
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
L + E+ + ++ +++ DV++L+ L T H+IN E L K+ A +VN +
Sbjct: 225 -LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239
RG + D A+ L+ + DV+ +P K M + PHI+ + +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR 343
Query: 240 MATLAALNVLGKIKGYPIWGNPNQV 264
A + +G PI ++
Sbjct: 344 YAAGTREILECFFEGRPI---RDEY 365
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 246 bits (629), Expect = 2e-80
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 36/281 (12%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
+VG++++D++ K GI V + P E+ AE ++ L +R+ ++ ++ +
Sbjct: 72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNF--S 129
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
+ + L T+GVIG GRIGS A F M ++ YD+ + L++ Y
Sbjct: 130 QDSEILARELNRLTLGVIGTGRIGSRVAMYG-LAFGMKVLCYDVVKREDLKEKGCVY--- 185
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
+S+DE+L+E+DVISLH K T+H+IN+ER++ MK L+N +R
Sbjct: 186 --------------TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTAR 231
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEP----------------YMKPGLSEMKNAIV 225
G V+D AL ++ +GLDVFEDE L+ N I+
Sbjct: 232 GKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII 291
Query: 226 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 266
PHIA + + E + V +KG N V
Sbjct: 292 TPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFVVG 332
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 244 bits (626), Expect = 2e-80
Identities = 96/253 (37%), Positives = 141/253 (55%), Gaps = 21/253 (8%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
VG +N+DV AA + GI V N P + + AELA L + AR+I AD MR G W
Sbjct: 75 VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREG---VWA 131
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
+G L+G+T+G+IG GRIG A++ MN++ YD Y E+
Sbjct: 132 KKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILLYDPYPN---EERAKEVN--- 184
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
+ ++ +L+E+DV+++H L ++TYHLIN+ERL MKK AIL+N SRG
Sbjct: 185 -------GKFV---DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMA 241
PV+D ALV+ LK+ + GLDVFE+EP K L++ N ++ PHI +++ +E
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG 294
Query: 242 TLAALNVLGKIKG 254
A V+ +KG
Sbjct: 295 VEVAEKVVKILKG 307
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 236 bits (605), Expect = 2e-77
Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
++ G +++DVN + + N + + AE A +L LA A+ I+E +E M+AG++
Sbjct: 56 ISAGVDHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQ 114
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
LL G+ +G++G G IG A + + F M +I Y
Sbjct: 115 SP-----TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD----------- 157
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
+ S ++ R++D + + L T ++N LA +K +VN +
Sbjct: 158 --QNVDVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVA 209
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI-ASASKWTREG 239
R V+ + ++ LK+ DV+ +EP + + ++NAI+ PH+ S +
Sbjct: 210 RADVVSKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDI 267
Query: 240 MATLAALNVLGKIKGYP 256
LA NV +G
Sbjct: 268 AIQLAFENVRNFFEGEG 284
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 237 bits (608), Expect = 2e-77
Identities = 75/277 (27%), Positives = 118/277 (42%), Gaps = 38/277 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
VG +N+D+ A + G + N P AE AA + R+ DE +
Sbjct: 79 VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLR 135
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
+G ++ Q VGV+G G IG + ++M EGF +I YD+++ LEK
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV---- 190
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
S+D++ ++ADVISLH H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--------------LSEMKNAIVVPH 228
P++D A++ L +F +DV+E E + L N +V P
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPK 297
Query: 229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVE 265
A + M A N L ++G V+
Sbjct: 298 TAFYTTHAVRNMVVKAFDNNLELVEGKE---AETPVK 331
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 234 bits (599), Expect = 7e-76
Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 19/258 (7%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
+G +++D+ AA G+ V G + AE L R V + G ++
Sbjct: 94 GIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-V 152
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
+ L+G+T+G +GAGRIG + + F NL+Y+D Q
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ-------------- 197
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
+ E+ K ++E+L + DVI ++ L + T + NKE + +KK ++VN +R
Sbjct: 198 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNAR 257
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTREG 239
G +++ A+V+ ++ + DV++ +P K P M N + PH + + +
Sbjct: 258 GAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTIDAQLR 316
Query: 240 MATLAALNVLGKIKGYPI 257
A + KG
Sbjct: 317 YAAGTKDMLERYFKGEDF 334
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 231 bits (591), Expect = 2e-74
Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 27/265 (10%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG----- 56
++D+ A G+ V G AEL +L +AA RRI + ++ G
Sbjct: 83 RDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQS 141
Query: 57 --LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 114
PN +G +LKGQT+G+ G G+IG A F MN++
Sbjct: 142 GLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVL------------- 187
Query: 115 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 174
+G+ + + A S D + ++DV+S+H L+ T +I L MK A
Sbjct: 188 --VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTA 245
Query: 175 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASA 232
+ VN SR +++E +V L + +DVFE EP + G L M+N I PHI
Sbjct: 246 LFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHTLLRMENCICTPHIGYV 304
Query: 233 SKWTREGMATLAALNVLGKIKGYPI 257
+ + E +A N+L ++G
Sbjct: 305 ERESYEMYFGIAFQNILDILQGNVD 329
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 229 bits (587), Expect = 3e-74
Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 39/278 (14%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
G +++D A + G + P AELA + ++ R + +
Sbjct: 78 AGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--V 135
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
++ TVGV+G GRIG A++ G +I D+++ +E + T
Sbjct: 136 DAFMFSKEVRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---- 189
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
S+DEVL ++D+I++H K ++ ++ L MK AILVNC+RG
Sbjct: 190 -------------VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARG 236
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVP 227
++D A++E ++ + G DV + E P + + ++ P
Sbjct: 237 QLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITP 296
Query: 228 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVE 265
H+ S + + M ++ N+ + PN+++
Sbjct: 297 HLGSYTDEAVKNMVEVSYQNLKDLAETGDC---PNKIK 331
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 224 bits (572), Expect = 5e-72
Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 38/276 (13%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
VG +N+D+ A +YGI + N P AE A + +L R + + ++AG Y+
Sbjct: 77 VGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--K 134
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
F+G L QTVGV+G G IG ++ +GF +I YD Y Y
Sbjct: 135 AGTFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y---- 188
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
S++++ +++DVI LH + H+IN+ MK AI++N +R
Sbjct: 189 -------------VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 235
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--------------LSEMKNAIVVPH 228
+ID A++ +LK + VG+D +E E L M N ++ PH
Sbjct: 236 NLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH 295
Query: 229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 264
IA ++ M + +++ + +V
Sbjct: 296 IAYYTETAVHNMVYFSLQHLVDFLTKGET---STEV 328
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 220 bits (562), Expect = 2e-70
Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 20/255 (7%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
G +NVD+ AA + GI V NTP + + AEL + + AR+I +A M+ G W
Sbjct: 98 TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWE 154
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
F+G L G+T+G++G GRIG A M + F M I YD + + ++G
Sbjct: 155 RKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIIS---PEVSASFG--- 207
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
V ++E+ D I++H L +T L+N A KK +VNC+RG
Sbjct: 208 -------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
++DE AL+ L+ LDVF +EP L + +N I PH+ +++K +
Sbjct: 258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE 317
Query: 243 LAALNVLGKIKGYPI 257
A+ + +KG +
Sbjct: 318 EIAVQFVDMVKGKSL 332
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 219 bits (560), Expect = 2e-70
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
+G +N+D A K I V PG T++ EL L +AAAR++ + ++G +
Sbjct: 77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSG---IF- 132
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
G L G+T+G++G GRIG+ + M ++ YD+ +
Sbjct: 133 -KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI---REKAEKIN--- 184
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
S++E+L+ +DVISLH + K +I+ + MK I+VN SR
Sbjct: 185 -------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREG 239
++ AL++++K+ ++ DVF +EP + L + + IV HI + +K ++
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 240 MATLAALNVLGKIKGYPI 257
+A + N+L +K +
Sbjct: 295 VAEMTTQNLLNAMKELGM 312
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 221 bits (565), Expect = 8e-69
Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 29/280 (10%)
Query: 2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
VG +NVDV+AA G+ V N P + AE A +L LAA+R+I AD +R W
Sbjct: 74 GVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---TW 130
Query: 62 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
+ F G + G+TVGV+G GRIG A+ + F ++ YD +V+
Sbjct: 131 KRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--AR 179
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
G + ++ D++L AD IS+H T LI+KE LA K I+VN +R
Sbjct: 180 AAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 233
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
G ++DE AL + + + GLDVF EP L E+ +V PH+ +++ ++
Sbjct: 234 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAG 293
Query: 242 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSI 281
T A +V + G + P+ V N + +
Sbjct: 294 TDVAESVRLALAGEFV---PDAV------NVGGGVVNEEV 324
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 211 bits (539), Expect = 1e-66
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 29/263 (11%)
Query: 3 VGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
VG +++D++ N+ G I+V G + AE L R V A E +
Sbjct: 93 VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINH---D 149
Query: 61 WLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 118
W ++G+T+ IGAGRIG +V F + Y YQA +
Sbjct: 150 WEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKDA----- 203
Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
E+ V +R +++E++ +AD+++++ L T LINKE L+ KK A LVN
Sbjct: 204 --------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVN 255
Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIVVPHIAS 231
+RG + + L+ + G DV+ +P K P +M+N + PH +
Sbjct: 256 TARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAMTPHYSG 314
Query: 232 ASKWTREGMATLAALNVLGKIKG 254
+ + A + G
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTG 337
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 205 bits (524), Expect = 5e-64
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 30/241 (12%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
+G N VD++AA K GI V N P T + AEL L R + EA+ G
Sbjct: 78 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VGN 134
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
+G+ +G+IG G IG+ + E M + +YD+ L
Sbjct: 135 KLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG---------- 183
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L+N SRG
Sbjct: 184 --NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 235
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWTR 237
V+D AL + L + +DVF EP L+E N ++ PHI S T+
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG-GS--TQ 292
Query: 238 E 238
E
Sbjct: 293 E 293
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 204 bits (521), Expect = 2e-63
Identities = 79/241 (32%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
VG N V++ AA K GI V N P T + AEL + RRI AG GW
Sbjct: 89 VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG---GWE 145
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
++G+T+G++G G IGS + E M + YYD +L+
Sbjct: 146 KTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY--------- 193
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
N + A+S+DE+L+ +DV+SLH K+T LI + +L MKK A L+N +RG
Sbjct: 194 -GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARG 246
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWTR 237
+D AL + L++ + +DVF EP L ++N I+ PHI S T
Sbjct: 247 SDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG-GS--TE 303
Query: 238 E 238
E
Sbjct: 304 E 304
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 195 bits (498), Expect = 5e-61
Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 31/254 (12%)
Query: 1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
++ G + + + A G+ V NT G+ + +E + L+ R A R
Sbjct: 68 ISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---R 124
Query: 61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
+ L GQ + + G G+IG + A M++I + + F
Sbjct: 125 QWALPMTTSTLTGQQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA- 181
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
++ + L A+ I L TT+HL + E K++ +L+N
Sbjct: 182 --------------FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIG 227
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASK 234
RGP +D AL+ L + + LDV E EP L + ++ PHI+
Sbjct: 228 RGPAVDTTALMTALDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQIA 282
Query: 235 WTREGMATLAALNV 248
R + + A N
Sbjct: 283 HFRATVFPIFAANF 296
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 196 bits (500), Expect = 1e-60
Identities = 73/292 (25%), Positives = 110/292 (37%), Gaps = 53/292 (18%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
+G +++D++ + GIA + PG + LA A
Sbjct: 67 IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
G L +T GV+GAG++G ++ G ++ D + R
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 178
+ V S++ +L EADVISLH + T HL+++ RLA ++ LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
SRG V+D AL L+ V LDV+E EP P L + I PHIA + E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIA-GY--SLE 261
Query: 239 G--MATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALG 288
G T +G + V P +P + AL
Sbjct: 262 GKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLAG--LQLNPGCDPAWALA 311
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 190 bits (485), Expect = 2e-58
Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 49/241 (20%)
Query: 3 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
G ++VD + GI PG E S L A R
Sbjct: 70 AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112
Query: 63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
G L+ +T+G++G G +GS + E + + D +A R
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 178
+ ++DE+++EADV++ H T HL ++ + +K AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
RGPV+D AL+ L V LDV+E EP + L E + I HIA T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA-GY--TLE 264
Query: 239 G 239
G
Sbjct: 265 G 265
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 118 bits (299), Expect = 1e-31
Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 40/257 (15%)
Query: 17 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 76
+ N G+ +E L+ R++ E + L W LKG+T+
Sbjct: 89 DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143
Query: 77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 136
++G G IG A + F M ++ F Y
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186
Query: 137 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195
+++++L +AD ++S+ P + T+HL R K AIL N RG I+E L+ L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 196 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVL 249
+ LDVFE EP L N I+ PH ++ S + +A + N +
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYI 298
Query: 250 GKIKGYPIWGNPNQVEP 266
I G P+ +++
Sbjct: 299 RFIDGQPL---DGKIDF 312
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 112 bits (282), Expect = 3e-29
Identities = 50/249 (20%), Positives = 82/249 (32%), Gaps = 40/249 (16%)
Query: 25 GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 84
+ E A S L RR + L W P + +VG++GAG +
Sbjct: 96 TGMGLQMQEYAVSQVLHWFRRFDDYQALKNQAL---WKP--LPEYTREEFSVGIMGAGVL 150
Query: 85 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144
G+ A + + L + + G + L +
Sbjct: 151 GAKVAESLQ-AWGFPLRCWS-RSRKSWPGVESYVG---------------REELRAFLNQ 193
Query: 145 AD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 203
+I+L P T +IN E L + A ++N +RG + E L+ L +
Sbjct: 194 TRVLINLLP-NTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAM 252
Query: 204 LDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 257
LDVF EP L + + PHIA+ + + + KG P+
Sbjct: 253 LDVFSQEP-----LPQESPLWRHPRVAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPV 305
Query: 258 WGNPNQVEP 266
QV+
Sbjct: 306 ---TGQVDR 311
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 65.7 bits (160), Expect = 2e-12
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
+ G V V+G GR+G + AR + + G +P
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
+ + LR+ DV ++ LA M +++ + P +
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254
Query: 191 VEHLKQNPMFRVGL 204
E + GL
Sbjct: 255 AEKRGIKALLVPGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-09
Identities = 68/384 (17%), Positives = 107/384 (27%), Gaps = 153/384 (39%)
Query: 17 GIAVGNTPGVLTETTAELAAS-LSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLK 72
G A + P T AEL L ++ VE + G +D L F L+
Sbjct: 47 GFAADDEP----TTPAELVGKFLGYVSSL--VEPSK---VGQFDQVLNLCLTEFENCYLE 97
Query: 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLI--YYD----------------LYQATRLEKF 114
G + + A + ++ LI Y L++A
Sbjct: 98 GNDIHALAAKLLQENDTTLVK---TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN- 153
Query: 115 VTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 172
F G Q + +E LR+ L+ TYH++ + +
Sbjct: 154 AQLVAIF----GGQGNTDDY-----FEE-LRD-----LY-----QTYHVLVGDLIKFS-- 191
Query: 173 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---------DEPYMK------P-- 215
L R + +F GL++ E D+ Y+ P
Sbjct: 192 AETLSELIRTTL----------DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 216 ---------------------------GLSEMKNAIVVPH-IASASKWTREGMATLAALN 247
G + +V IA W ++ A+
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 248 VLGKI-----KGYPIW---------------GNP-----------NQVEPFLNE-NAQPP 275
VL I + YP G P QV+ ++N+ N+ P
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 276 AASP---SIVNS-KAL---GLPVS 292
A S+VN K L G P S
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQS 385
Score = 38.9 bits (90), Expect = 0.002
Identities = 49/267 (18%), Positives = 74/267 (27%), Gaps = 85/267 (31%)
Query: 41 AAARRIVE-ADEFMRAGLYDGWLPNLFVGNLLKGQTV--GVIGAGRIGSAYARMMVEGFK 97
AA+ + AD + G+ V N T+ G RI Y+ M+
Sbjct: 1640 KAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI----- 1692
Query: 98 MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--VLD 155
E V + K E ++E +L
Sbjct: 1693 -------------FETIVDGKLKTEKIFKE----------INEHST--SYTFRSEKGLLS 1727
Query: 156 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 215
T + T + A+ + + E A E LK GL
Sbjct: 1728 ATQF---------T--QPALTL------M--EKAAFEDLKSK-----GL---IPADATFA 1760
Query: 216 GLS--EMKNAIV----VPHIASASKWTRE-GMATLAAL--NVLGKIKGYPIWG-NPNQVE 265
G S E A+ V I S + GM A+ + LG+ Y + NP +V
Sbjct: 1761 GHSLGEY-AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRVA 1818
Query: 266 PFLNENAQPPAASP---------SIVN 283
++ A IVN
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 35.8 bits (82), Expect = 0.017
Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 56/176 (31%)
Query: 29 ETTAELAA---SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIG 85
E A LA+ +S+ + +V F R G + V G++ + A G
Sbjct: 1766 EYAA-LASLADVMSIESLVEVV----FYR-----GMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 86 SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-AN----GEQPVTWKRASSMDE 140
+ F + Y +E+ G ++ N +Q
Sbjct: 1816 R-----VAASFSQEALQY------VVERVGKRTGWLVEIVNYNVENQQ-Y---------- 1853
Query: 141 VLREADVISLHPV-LDKTTYHLINKERLATMKKEAI-LVNCSRGPVIDEVALVEHL 194
V + LD T L +K + I ++ + ++EV HL
Sbjct: 1854 ------VAAGDLRALDTVT------NVLNFIKLQKIDIIELQKSLSLEEVE--GHL 1895
Score = 30.8 bits (69), Expect = 0.64
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 37/123 (30%)
Query: 170 MKKEAILVNCSRGPVIDEV---ALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 226
M + L S +V A H K F + LD+ + P + +
Sbjct: 1631 MGMD--LYKTS--KAAQDVWNRAD-NHFKDTYGFSI-LDIVINNP----------VNLTI 1674
Query: 227 PHIASASKWTREG-MATLAALNVLGKIKGYPI------------WGNPNQVEPFLN--EN 271
K RE A + V GK+K I + + + L+ +
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE---KGLLSATQF 1731
Query: 272 AQP 274
QP
Sbjct: 1732 TQP 1734
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 8e-05
Identities = 48/334 (14%), Positives = 91/334 (27%), Gaps = 111/334 (33%)
Query: 30 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-------VGNL----LKG--QTV 76
TT + L+AA + + L + +L +L L + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------- 128
+I + + +L + + L+ +
Sbjct: 331 SIIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 129 -------P-----VTWKRASS------MDEVLREADV--------ISLHPVLDKTTYHLI 162
P + W ++++ + + V IS+ + + L
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 163 NKERLATMKKEAILVN--------CSRGPVIDEVA------LVEHLKQ------NPMFRV 202
N+ L +V+ S + + + HLK +FR
Sbjct: 441 NEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR- 494
Query: 203 GLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGN-P 261
VF D ++ I ++ W G + L L L K Y I N P
Sbjct: 495 --MVFLD-------FRFLEQKI----RHDSTAWNASG-SILNTLQQLKFYKPY-ICDNDP 539
Query: 262 ------NQVEPFLNENAQPPAASPSIVNSKALGL 289
N + FL P +++ SK L
Sbjct: 540 KYERLVNAILDFL------PKIEENLICSKYTDL 567
Score = 34.4 bits (78), Expect = 0.043
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPGLS--EMKNAIVVPHIASASK---WTREGMATLA 244
++ + F D + + K LS E+ + I+ S + WT
Sbjct: 21 ILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 245 ALNVLGKI--KGYPIWGNPNQVEPFLNENAQP 274
+ ++ Y + + P E QP
Sbjct: 79 VQKFVEEVLRINYK-F----LMSPIKTEQRQP 105
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 37.8 bits (88), Expect = 0.003
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 20/108 (18%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
+ G V V+G GR G AR N+ + L + + G P
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFA-ALGANVKVGAR-SSAHLAR--------ITEMGLVPF 204
Query: 131 TWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILV 177
+ E +++ D I+ P + ++N+ L++M + +++
Sbjct: 205 H---TDELKEHVKDIDICINTIPSM------ILNQTVLSSMTPKTLIL 243
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 36.9 bits (86), Expect = 0.006
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWK 133
+ VIG+ + E + I + ++LEK ++ + K
Sbjct: 5 ICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMN----------IKPK 54
Query: 134 RASSMDEVLREADV 147
+ ++ E+L +
Sbjct: 55 KYNNWWEMLEKEKP 68
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 34.8 bits (81), Expect = 0.026
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Query: 137 SMDEVLREADVISL--------HPVLDKTTYHL---INKERLATMKKEAIL-----VNCS 180
SMDE + +DV+ L + + Y + ER MK+ AI+ VN
Sbjct: 196 SMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAPVN-- 253
Query: 181 RGPVID-EVA 189
RG ID +
Sbjct: 254 RGVEIDDSLV 263
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 34.2 bits (79), Expect = 0.034
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 76 VGVIGAGRIGS-AYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
+G+IG G I AY ++ + + + + + + EK + Y
Sbjct: 9 MGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKV-KREKICSDYR------------IM 55
Query: 134 RASSMDEVLREADVISLH-PVLDKTTYH 160
S++ + ++ D I LH T H
Sbjct: 56 PFDSIESLAKKCDCIFLHSS----TETH 79
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 33.9 bits (77), Expect = 0.045
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 29/142 (20%)
Query: 69 NLLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 126
N + +TV ++GA G++G+ R + + L ++ R L+ G
Sbjct: 7 NDVGPKTVAILGAGGKMGARITRKIHDSAHH--LAAIEIAPEGR---------DRLQGMG 55
Query: 127 EQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS------ 180
D + EADV+ L L + ++ + ++ I++
Sbjct: 56 IPLT------DGDGWIDEADVVVL--ALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYA 107
Query: 181 --RGPVIDEVALVEHLKQNPMF 200
D + H P+F
Sbjct: 108 GVMPERADITYFIGHPCHPPLF 129
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 33.9 bits (78), Expect = 0.060
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 74 QTVGVIGAGRIGSAYARMMVEGFKM-----NLIYYDLYQATRLEKFVTAYGQFLKANGEQ 128
+ + +IG G + F ++ YD K + ++
Sbjct: 130 RKMALIGNGAQ----SEFQALAFHKHLGIEEIVAYDTDPL-ATAKLIANLKEYS------ 178
Query: 129 PVTWKRASSMDEVLREADVIS 149
+T +RASS+ E ++ D+I+
Sbjct: 179 GLTIRRASSVAEAVKGVDIIT 199
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 33.1 bits (76), Expect = 0.087
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 20/88 (22%)
Query: 76 VGVIGAGRIGS-AYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
+GV+G G I A+ ++ L + +A + ++
Sbjct: 8 IGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA-KALPICESWRI------------P 54
Query: 134 RASSMDEVLREADVISLH-PVLDKTTYH 160
A S+ + D + +H T H
Sbjct: 55 YADSLSSLAASCDAVFVHSS----TASH 78
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 32.9 bits (74), Expect = 0.11
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 76 VGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGE 127
V V G G + + G ++ ++ +A R K + E
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 128 QPVTWKRASS-MDEVLREADVI 148
K + + + ADV+
Sbjct: 65 VKSRPKVITKDPEIAISGADVV 86
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 32.0 bits (72), Expect = 0.16
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 72 KGQTVGVIGAGRIGSAYARMMVE 94
+G + V+G G +G A + +
Sbjct: 18 QGMKIAVLGTGTVGRTMAGALAD 40
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 31.3 bits (72), Expect = 0.18
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 21/93 (22%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQ 128
G + ++G G + S A +K+ + ++ EK+ +
Sbjct: 19 NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-----------EYE 67
Query: 129 PVTWKRASSMDEVLREADVI-----SLHPVLDK 156
V + +D +++ DVI S P++++
Sbjct: 68 YVLI---NDIDSLIKNNDVIITATSSKTPIVEE 97
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 31.5 bits (72), Expect = 0.28
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTW 132
+ + ++GAG ++ + E F + ++ + EKF ++
Sbjct: 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKE-NAEKFADTVQGEVRV-------- 186
Query: 133 KRASSMDEVLREADVIS 149
SS+ E + ADVI
Sbjct: 187 --CSSVQEAVAGADVII 201
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.5 bits (71), Expect = 0.30
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 135
V ++GAG IG A A + + F + + + ++++F T + A+
Sbjct: 19 VLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLK--VDASNFD------- 69
Query: 136 SSMDEVLREAD-VISLHP 152
+ EV++E + VI P
Sbjct: 70 -KLVEVMKEFELVIGALP 86
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 31.3 bits (70), Expect = 0.31
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 75 TVGVIGAGRIGSAYARMMVEGFKMNLIY 102
+ +G G + + + + +++ I
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYIL 31
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic
structure 2 function project, S2F, unknown function;
HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP:
d.58.4.7
Length = 101
Score = 29.7 bits (67), Expect = 0.33
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 39 SLAAARRIVEADEFMRAGLYDGW 61
+L AA+ D ++ AG+Y
Sbjct: 70 NLQAAKDWAAQDPYVEAGVYADV 92
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 31.1 bits (71), Expect = 0.34
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 76 VGVIGAGRIGSAYARMMVEGFK-MNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
G++G G IGS + R + + ++ D+ R + + Y + K
Sbjct: 26 AGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAG-RAQAALDKYA----------IEAK 74
Query: 134 RASSMDEVLREADV 147
+ +++ + DV
Sbjct: 75 DYNDYHDLINDKDV 88
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 30.8 bits (70), Expect = 0.43
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 76 VGVIGAGRIGSAYARMMVEGFK-MNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
+GVIG G IG + + ++ D+ Q +K V Y +
Sbjct: 5 IGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQE-AAQKVVEQYQ----------LNAT 53
Query: 134 RASSMDEVLREADV 147
+ D +L + +V
Sbjct: 54 VYPNDDSLLADENV 67
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 30.8 bits (70), Expect = 0.54
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 76 VGVIGAGRIGSAYARMM--VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
V IG GR A E K+ Y + + EKF Y
Sbjct: 8 VAAIGLGRWAYVMADAYTKSEKLKLVTC-YSRTED-KREKFGKRYN------------CA 53
Query: 134 RASSMDEVLREADV 147
++M+ +L DV
Sbjct: 54 GDATMEALLAREDV 67
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 30.3 bits (69), Expect = 0.60
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 76 VGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 134
+GVIG GRIG+ +A + L D+ + RL + G K
Sbjct: 5 IGVIGLGRIGTIHAENLKMIDDAILYAISDVRED-RLREMKEKLG-----------VEKA 52
Query: 135 ASSMDEVLREADV 147
E++ + +V
Sbjct: 53 YKDPHELIEDPNV 65
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.4 bits (69), Expect = 0.64
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 76 VGVIGAGRIGSAYARM---MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW 132
++G GRI + + + ++ + D+ A L+ V G
Sbjct: 16 FALVGCGRIANNHFGALEKHADRAELIDV-CDIDPA-ALKAAVERTG------------A 61
Query: 133 KRASSMDEVLREADV 147
+ +S+ ++L + D
Sbjct: 62 RGHASLTDMLAQTDA 76
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 30.4 bits (69), Expect = 0.66
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 74 QTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPV 130
V ++G+G +G ++A GF++ L YD+ T + + + L+ +G
Sbjct: 7 GDVLIVGSGLVGRSWAMLFASGGFRVKL--YDIEPRQITGALENIRKEMKSLQQSGSLKG 64
Query: 131 TWKR---------ASSMDEVLREADVI 148
+ +++ E + I
Sbjct: 65 SLSAEEQLSLISSCTNLAEAVEGVVHI 91
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 30.3 bits (69), Expect = 0.67
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGE 127
+ +VG IGAG++ A A+ + ++ + G
Sbjct: 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV------- 72
Query: 128 QPVTWKRASSMDEVLREADVISL 150
K E ++ +DV+ L
Sbjct: 73 -----KLTPHNKETVQHSDVLFL 90
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 30.6 bits (68), Expect = 0.68
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPV 130
G+ V ++G+G + + +N+ A L K + L +
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDS-- 80
Query: 131 TWKRASSMDEVLREAD-VISLHP 152
++D+VL + D VISL P
Sbjct: 81 ------ALDKVLADNDVVISLIP 97
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 30.4 bits (68), Expect = 0.69
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 11/145 (7%)
Query: 74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGE-QP 129
+T V+G G G A+A + G + D + ++ + A G L
Sbjct: 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 64
Query: 130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
+T S + +++ADVI + +H +A+ E L+ + G +
Sbjct: 65 LT----SDIGLAVKDADVILIVV---PAIHHASIAANIASYISEGQLIILNPGATGGALE 117
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMK 214
+ L++N V + +
Sbjct: 118 FRKILRENGAPEVTIGETSSMLFTC 142
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 30.4 bits (69), Expect = 0.70
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 76 VGVIGAGRIGSAYAR 90
+ + GAGRIG +A
Sbjct: 7 IALFGAGRIGHVHAA 21
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 30.2 bits (68), Expect = 0.75
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 134
+G IG G SA A + + +++ YD A G V+
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG----------VSC-- 73
Query: 135 ASSMDEVLREADVI 148
+S+ EV E DVI
Sbjct: 74 KASVAEVAGECDVI 87
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 30.2 bits (69), Expect = 0.77
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 69 NLLKGQTVGVIGAGRIGSAYARMMVE 94
N + + + ++GAG IG A + +
Sbjct: 1 NAMARKKITLVGAGNIGGTLAHLALI 26
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 76 VGVIGAGRIGSAYAR 90
+IG GR+G +AR
Sbjct: 11 AAIIGLGRLGERHAR 25
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A
Length = 317
Score = 29.8 bits (68), Expect = 0.90
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 70 LLKGQTVGVIGAGRIGSAYARMMVE 94
+++ + + VIG+G+IG A ++ +
Sbjct: 1 MIERRKIAVIGSGQIGGNIAYIVGK 25
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 29.8 bits (68), Expect = 0.92
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 55 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 94
A L D + NL + + V+G G +G A A ++
Sbjct: 1 AALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILM 40
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 30.2 bits (68), Expect = 0.94
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 70 LLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ 128
L+ G+ V + G G +G A M +G ++++ D A L+ + +
Sbjct: 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINA--LQAMMEGF---------- 318
Query: 129 PVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
+++E + +AD++ V +I E + MK AIL N
Sbjct: 319 -----DVVTVEEAIGDADIV----VTATGNKDIIMLEHIKAMKDHAILGN 359
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 29.8 bits (68), Expect = 1.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVE 94
+K + V VIGAG G+ A ++ +
Sbjct: 6 IKRKKVSVIGAGFTGATTAFLLAQ 29
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.4 bits (65), Expect = 1.1
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVE 94
+G + + G G +G A
Sbjct: 17 FQGMEITIFGKGNMGQAIGHNFEI 40
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 29.6 bits (67), Expect = 1.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 76 VGVIGAGRIGSAYAR 90
+ +IGAGR G Y R
Sbjct: 13 LALIGAGRWGKNYIR 27
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 29.4 bits (67), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 69 NLLKGQTVGVIGAGRIGSAYARMMV 93
N KG V +IG G +GS+YA +V
Sbjct: 2 NKFKGNKVVLIGNGAVGSSYAFSLV 26
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 29.0 bits (66), Expect = 1.4
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 74 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
+ +G IG G +G A M+ + +I DL A L+ YG L
Sbjct: 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA-NLKNASEKYG--LTT------ 53
Query: 131 TWKRASSMDEVLREADVI 148
+ +EV + AD++
Sbjct: 54 ----TTDNNEVAKNADIL 67
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 29.4 bits (67), Expect = 1.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 72 KGQTVGVIGAGRIGSAYARMMVE 94
+ + V +IG+G IG +
Sbjct: 8 RRKKVAMIGSGMIGGTMGYLCAL 30
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
V VIGAG +G+ A +
Sbjct: 3 VTVIGAGNVGATVAECVAR 21
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 69 NLLKGQTVGVIGAGRIGSAYARMMVE 94
++ + + +IGAG+IGS A ++ +
Sbjct: 10 TVIMRKKISIIGAGQIGSTIALLLGQ 35
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 29.0 bits (66), Expect = 1.5
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 17/68 (25%)
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVI------------SLHPVLDKTTYHLINKERL 167
L G + W SS++EV+ E D++ S + + K + ++ L
Sbjct: 200 DMLDEKG---IAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANV-KAQF-VLRASDL 254
Query: 168 ATMKKEAI 175
K
Sbjct: 255 HNAKANMK 262
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 29.4 bits (66), Expect = 1.5
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 129
L+ G+ V + G G +G A ++G + ++ ++ + +
Sbjct: 254 LISGKIVVICGYGDVGKGCA-SSMKGLGARVYITEIDPICAIQAVMEGF----------- 301
Query: 130 VTWKRASSMDEVLREADVISLHPVLDKTT--YHLINKERLATMKKEAILVN 178
++DE++ + D T +I E L MK A++ N
Sbjct: 302 ----NVVTLDEIVDKGDFFIT------CTGNVDVIKLEHLLKMKNNAVVGN 342
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 29.0 bits (66), Expect = 1.6
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQ 128
+ + IG G + ++ G+ N I + +L+ F G
Sbjct: 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD-KLDFFKEKCG--------- 50
Query: 129 PVTWKRASSMDEVLREADVISL 150
V + ADV+ L
Sbjct: 51 -VHT--TQDNRQGALNADVVVL 69
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 29.1 bits (66), Expect = 1.6
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTW 132
G IG G + F + + YD+ + +KFV + + G
Sbjct: 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREK-AAKKFV----SYCEDRGISASV- 179
Query: 133 KRASSMDEVLREADVIS 149
E DV+
Sbjct: 180 ----QPAEEASRCDVLV 192
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 29.0 bits (66), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 69 NLLKGQTVGVIGAGRIGSAYARMMVE 94
+ + +IG+G IG A +
Sbjct: 3 GSMARNKIALIGSGMIGGTLAHLAGL 28
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.4 bits (64), Expect = 1.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVE 94
+K + VIG GR G + + +
Sbjct: 4 IKNKQFAVIGLGRFGGSIVKELHR 27
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 29.0 bits (66), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
+ VIGAG +G+ A + E
Sbjct: 3 ITVIGAGNVGATTAFRLAE 21
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 134 RASSMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 178
++D+ AD++ TT +I + + MK I+ N
Sbjct: 292 EVVTLDDAASTADIVV-------TTTGNKDVITIDHMRKMKDMCIVGN 332
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.0 bits (66), Expect = 2.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 70 LLKGQTVGVIGAGRIGSAYARMMVE 94
+ + ++G+G IG A ++V+
Sbjct: 1 MAPKAKIVLVGSGMIGGVMATLIVQ 25
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 28.6 bits (65), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 69 NLLKGQTVGVIGAGRIGSAYARMMV 93
++ Q V ++G G +GS+YA M
Sbjct: 1 SMPNHQKVVLVGDGAVGSSYAFAMA 25
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 28.9 bits (65), Expect = 2.1
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 13/73 (17%)
Query: 76 VGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 134
IG + L ++ KF + +
Sbjct: 7 FAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSD-NRAKFTSLFPSV-----------PF 54
Query: 135 ASSMDEVLREADV 147
A+S ++++ +A +
Sbjct: 55 AASAEQLITDASI 67
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 28.6 bits (65), Expect = 2.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
+ +IGAG +GS A +
Sbjct: 5 ISIIGAGFVGSTTAHWLAA 23
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 28.7 bits (65), Expect = 2.1
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 66 FVGNLLKGQTVGVIGAGRIGSAYARMMVE 94
F G++ + VGV+G G++G RM+VE
Sbjct: 17 FQGHMWNSRKVGVLGGGQLG----RMLVE 41
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 28.6 bits (65), Expect = 2.2
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)
Query: 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 135
+G+IG G++ SA + + + LI R ++ A
Sbjct: 6 IGIIGVGKMASAIIKGLKQT-PHELIISGSSLE-RSKEIAEQLAL------------PYA 51
Query: 136 SSMDEVLREADVISL 150
S +++ + D++ L
Sbjct: 52 MSHQDLIDQVDLVIL 66
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 28.6 bits (65), Expect = 2.4
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
+ ++GAG++G A A M++
Sbjct: 2 ITILGAGKVGMATAVMLMM 20
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 28.7 bits (64), Expect = 2.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 76 VGVIGAGRIGSAYAR 90
V V+G GR GS R
Sbjct: 10 VVVVGVGRAGSVRLR 24
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 137 SMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 178
++EV+R+ D++ T +++ +E L MK I+ N
Sbjct: 268 KLNEVIRQVDIVI-------TCTGNKNVVTREHLDRMKNSCIVCN 305
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.5 bits (61), Expect = 2.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
+ V+GAG+IG A ++
Sbjct: 8 ICVVGAGKIGQMIAALLKT 26
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.1 bits (62), Expect = 2.6
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 75 TVGVIGAGRIGSAYAR 90
V + G G G +
Sbjct: 21 VVCIFGTGDFGKSLGL 36
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 28.2 bits (64), Expect = 2.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 73 GQTVGVIGAGRIGSAYARMMV 93
+ +G+IG G +G+A A ++
Sbjct: 1 ARKIGIIGLGNVGAAVAHGLI 21
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 28.2 bits (64), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 72 KGQTVGVIGAGRIGSAYARMMV 93
Q V ++G G +GS+YA MV
Sbjct: 8 DHQKVILVGDGAVGSSYAYAMV 29
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 137 SMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 178
+++V+ EA + TT +I E M+ +AI+ N
Sbjct: 259 LVEDVVEEAHIFV-------TTTGNDDIITSEHFPRMRDDAIVCN 296
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 28.6 bits (64), Expect = 3.0
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 134 RASSMDEVLREADVISLHPVLDKTT--YHLINKERLATMKKEAILVN 178
+ ++++V+ EAD+ TT +I + + MK AI+ N
Sbjct: 310 QVLTLEDVVSEADIFVT------TTGNKDIIMLDHMKKMKNNAIVCN 350
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 28.2 bits (63), Expect = 3.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 134 RASSMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 178
R +M+ +AD+ T YH+IN + + M+ AI+ N
Sbjct: 322 RVVTMEYAADKADIFV-------TATGNYHVINHDHMKAMRHNAIVCN 362
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 28.4 bits (64), Expect = 3.4
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 70 LLKGQTVGVIGAGRIGSAYARMMVE 94
+L G +G++G G++G RM
Sbjct: 32 ILPGAWLGMVGGGQLG----RMFCF 52
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 70 LLKGQTVGVIGAGRIGSAYARMMVE 94
L G T+G+IG G++G +MM +
Sbjct: 9 LKFGATIGIIGGGQLG----KMMAQ 29
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 27.9 bits (63), Expect = 3.5
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 20/70 (28%)
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--------DKTTYHL------INKE 165
+ L+ G + +++++V+ + DV+ V D+ Y +N +
Sbjct: 200 EELREKG---MKVVETTTLEDVIGKLDVLY---VTRIQKERFPDEQEYLKVKGSYQVNLK 253
Query: 166 RLATMKKEAI 175
L K E
Sbjct: 254 VLEKAKDELR 263
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 27.9 bits (63), Expect = 3.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 72 KGQTVGVIGAGRIGSAYARMMV 93
V +IGAG +GS+YA ++
Sbjct: 4 HVNKVALIGAGFVGSSYAFALI 25
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.8 bits (61), Expect = 3.6
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 75 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
+ +IGAG + + A+ + GF++ +Y +R E+ Q ++A +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVY------SRTEESARELAQKVEA--------E 57
Query: 134 RASSMDEVLREADVISL 150
+ + EV A + +
Sbjct: 58 YTTDLAEVNPYAKLYIV 74
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 28.2 bits (63), Expect = 3.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 76 VGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
+ +IG G I AY ++ + + L+ L T Y
Sbjct: 5 IAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPK-VLGTLATRYR 48
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 27.8 bits (63), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 76 VGVIGAGRIGSAYARMMV 93
VGV+G G +GS A +V
Sbjct: 3 VGVVGTGFVGSTAAFALV 20
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 27.6 bits (61), Expect = 3.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 75 TVGVIGAGRIGSAYAR 90
VG++G+G + A
Sbjct: 30 KVGILGSGDFARSLAT 45
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 28.0 bits (63), Expect = 4.0
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 65 LFVGNLLKGQTVGVIGAGR-IGSAYARMMVE 94
LF +LL+ + + G G IG A + +
Sbjct: 19 LFCPDLLRDKVAFITGGGSGIGFRIAEIFMR 49
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 27.8 bits (63), Expect = 4.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
VG++G+G +GSA A +
Sbjct: 3 VGIVGSGMVGSATAYALAL 21
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 27.6 bits (62), Expect = 4.2
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 133
+G+ GAG G+ +A + F + I ++ + + + P
Sbjct: 122 SVLGLFGAGTQGAEHAAQLSARFALEAIL--VHDPYASPEILER----IGRRCGVPA--- 172
Query: 134 RASSMDEVLREADVI-----SLHPVLD 155
R ++ ++ +AD++ S P+
Sbjct: 173 RMAAPADIAAQADIVVTATRSTTPLFA 199
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 27.9 bits (63), Expect = 4.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMV 93
+K + VIGAG +GS A
Sbjct: 5 VKPTKLAVIGAGAVGSTLAFAAA 27
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates,
ATP binding, lyase; 1.96A {Bacillus anthracis} PDB:
3qff_A* 3r5h_A*
Length = 389
Score = 27.9 bits (63), Expect = 4.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 70 LLKGQTVGVIGAGRIGSAYARMMVE 94
+L G+T+G+IG G++G RMM
Sbjct: 11 ILPGKTIGIIGGGQLG----RMMAL 31
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 27.8 bits (63), Expect = 4.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 76 VGVIGAGRIGSAYARMMV 93
V VIGAG +G++Y ++
Sbjct: 9 VVVIGAGFVGASYVFALM 26
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 27.7 bits (62), Expect = 4.5
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 67 VGNLLKGQTVGVIGA-GRIGSAYAR 90
+ +++ V+G G IG A +
Sbjct: 29 LQSVVSQSRFLVLGGAGSIGQAVTK 53
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 27.5 bits (62), Expect = 4.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 76 VGVIGAGRIGSAYARMMV 93
+G++G GR+GS+ A ++
Sbjct: 3 IGIVGLGRVGSSTAFALL 20
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 27.5 bits (62), Expect = 5.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 76 VGVIGAGRIGSAYARMMV 93
V +IGAG +G++ A M
Sbjct: 10 VAIIGAGFVGASAAFTMA 27
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 27.6 bits (62), Expect = 5.0
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 68 GNLLKGQTVGVIGAGRIGSA---YARMM 92
L G T VIG G +G R +
Sbjct: 167 PLLGPGSTAVVIGVGGLGHVGIQILRAV 194
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 27.8 bits (62), Expect = 5.1
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 17/75 (22%)
Query: 76 VGVIGAGRIGSAYAR---MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW 132
G+ G G GS ++ D + E+F YG
Sbjct: 5 FGICGLGFAGSVLMAPAMRHHPDAQIVAA-CDPNED-VRERFGKEYG------------I 50
Query: 133 KRASSMDEVLREADV 147
+++ E+++ +
Sbjct: 51 PVFATLAEMMQHVQM 65
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 27.5 bits (62), Expect = 5.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
+G +GAGR+GS A +
Sbjct: 3 LGFVGAGRVGSTSAFTCLL 21
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 27.3 bits (61), Expect = 5.8
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 76 VGVIGAGRIGSAYARMMVE 94
+ V+G +G A A ++
Sbjct: 24 ITVVGCDAVGMADAISVLM 42
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 27.1 bits (61), Expect = 6.3
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 71 LKGQTVGVIGAGR-IGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYG 119
LKG+ V G+ IG A A + G + + Y + E YG
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG 82
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 27.2 bits (61), Expect = 6.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 72 KGQTVGVIGAGRIGSAYARMMVE 94
+ V+G G +G A +
Sbjct: 13 TVNKITVVGGGELGIACTLAISA 35
>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly
roll, mercury derivative; 1.05A {Escherichia coli}
SCOP: b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A*
1seh_A* 2hr6_A* 2hrm_A* 1rnj_A* 1syl_A*
Length = 152
Score = 26.8 bits (60), Expect = 6.8
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 13 ANKYGIAVGNTPGV 26
+K+GI +GN G+
Sbjct: 75 GHKHGIVLGNLVGL 88
>3mdx_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal-binding,
nucleotide metabolism, structural genomics; 1.45A
{Brucella melitensis} PDB: 3mbq_A
Length = 178
Score = 26.9 bits (60), Expect = 6.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 13 ANKYGIAVGNTPGV 26
A K GI NTPG
Sbjct: 101 AFKNGITCLNTPGT 114
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation,
nucleotide-binding, cell cycle, coiled coil,
ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Length = 162
Score = 26.5 bits (58), Expect = 6.9
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 188 VALVEHLKQNPMFRVGLDV-FEDEPYMKPGLSEMKNAIVVPHIASASK 234
AL E + + DV ED PY ++AIVVP ++ ++
Sbjct: 33 NALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTE 80
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 27.5 bits (61), Expect = 7.1
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 71 LKGQTVGVIGAGR-IGSAYARMM 92
G+ V GAG +G YA +
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLF 39
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 27.1 bits (61), Expect = 7.4
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 130 VTWKRASSMDEVLREADVISLHPVL--------DKTTYH------LINKERLATMKKEAI 175
K + EV+ E DV+ V D+ Y +++ + MKK++I
Sbjct: 199 YPVKEVENPFEVINEVDVLY---VTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSI 255
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 26.9 bits (60), Expect = 7.4
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 71 LKGQTVGVIGAGR-IGSAYARMM 92
G+ V V GAG +G AYA
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAF 29
>3dfu_A Uncharacterized protein from 6-phosphogluconate
dehydrogenase-like family; putative rossmann-like
dehydrogenase, structural genomics; HET: MSE; 2.07A
{Corynebacterium glutamicum}
Length = 232
Score = 26.9 bits (59), Expect = 7.6
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 75 TVGVIGAGRIGSAYAR 90
VG+ G A
Sbjct: 8 RVGIFDDGSSTVNMAE 23
>3tqz_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; purines,
pyrimidines, nucleosides, nucleotides; 1.75A {Coxiella
burnetii}
Length = 155
Score = 26.4 bits (59), Expect = 7.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 13 ANKYGIAVGNTPGV 26
+K+GI +GN G+
Sbjct: 78 GHKHGIVLGNLVGL 91
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 26.6 bits (58), Expect = 8.4
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148
R +V K+++I+ D+ Q T+ + + +LK G + K + S+D V
Sbjct: 138 RALVP--KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK-SRSIDVTKEPEQVF 193
>3qlj_A Short chain dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 26.9 bits (60), Expect = 8.6
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 69 NLLKGQTVGVIGAGR-IGSAYARMM 92
++ G+ V V GAG IG A+A
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAF 47
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 26.8 bits (60), Expect = 8.7
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 13 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 58
A GI + G + E A +L LA + + A Y
Sbjct: 279 AESAGIPL--WMGGMLEAGVGRAHNLHLATLPGFTKPGDVSSASRY 322
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 26.8 bits (60), Expect = 9.0
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 111
+ ++G G IG++ A+ + + + + LI +L +A +L
Sbjct: 238 IMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKL 273
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 26.7 bits (60), Expect = 9.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 71 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYG 119
L+G V V G G + A + + G K L+ D+ +A + V G
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKLNTEGAK--LVVTDVNKA-AVSAAVAEEG 217
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 26.9 bits (60), Expect = 9.4
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 76 VGVIGAGRIGSAYAR 90
G+IGA I +
Sbjct: 3 WGLIGASTIAREWVI 17
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI,
structure initiative, midwest center for structural
genomic oxidoreductase; 1.90A {Neisseria meningitidis}
SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Length = 263
Score = 26.7 bits (60), Expect = 9.5
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 134
V +G G + +A A +V+ + + + E+ G
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE-KRERLEKELG-------------VE 47
Query: 135 ASSMDEVLREADVI 148
S+ L DV+
Sbjct: 48 TSATLPELHSDDVL 61
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 26.7 bits (60), Expect = 9.5
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 71 LKGQTVGVIGAGR-IGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYG 119
L G+ + GA IG A E G ++ + + + G
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG 80
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 26.6 bits (60), Expect = 9.5
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQPVT 131
+V ++G G +G+ A++ + G + D+ RL+ +G L A
Sbjct: 168 SVVILGGGTVGTNAAKIAL-GMGAQVTILDVNHK-RLQYLDDVFGGRVITLTAT------ 219
Query: 132 WKRASSMDEVLREAD-VISLHPVL---DKTTYHLINKERLATMKKEAILV 177
+++ + ++ AD +I VL K L+ ++ L+ MK+ A++V
Sbjct: 220 ---EANIKKSVQHADLLIG--AVLVPGAKAP-KLVTRDMLSLMKEGAVIV 263
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal
cavity, hydrolase, metal-B pyrimidine biosynthesis,
hydrolase-transferase; HET: FLC; 2.30A {Aquifex
aeolicus}
Length = 291
Score = 26.7 bits (60), Expect = 9.6
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Query: 137 SMDEVLREADVISL----------HPVLDKTTYHL---INKERLATMK 171
+D+ + ADV+ + + +++Y + KER +K
Sbjct: 198 DVDKGIDWADVVIWLRLQKERQKENYIPSESSYFKQFGLTKERFEKVK 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,639,774
Number of extensions: 291445
Number of successful extensions: 1555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 193
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)