BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022674
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 18/252 (7%)
Query: 2 SCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHF 61
SCFQ LF E ++ NF H++ PG E GA S+D LAD I VL +
Sbjct: 40 SCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYL 98
Query: 62 GLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYG 121
++ +GV AGAYIL +A+ + V GL+L++ A W +W +K+ G
Sbjct: 99 NFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------G 151
Query: 122 MCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDI 179
+ + E++L FS+ E+ GN S+++Q R ++ + N+ ++ + N R D+
Sbjct: 152 LTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIENYWNSYNNRRDL 206
Query: 180 S---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAM 236
+ G L+C ++ VG+ +P V SK+D ++ +++ G QP +
Sbjct: 207 NFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKL 266
Query: 237 LIPMEYFLMGYG 248
+YFL G G
Sbjct: 267 TEAFKYFLQGMG 278
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 18/252 (7%)
Query: 2 SCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHF 61
SCFQ LF E ++ NF H++ PG E GA S+D LAD I VL +
Sbjct: 40 SCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYL 98
Query: 62 GLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYG 121
++ +GV AGAYIL +A+ + V GL+L++ A W +W +K+ G
Sbjct: 99 NFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------G 151
Query: 122 MCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDI 179
+ + E++L FS+ E+ GN S+++Q R ++ + N+ + + N R D+
Sbjct: 152 LTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDL 206
Query: 180 S---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAM 236
+ G L+C ++ VG+ +P V SK+D ++ +++ G QP +
Sbjct: 207 NFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKL 266
Query: 237 LIPMEYFLMGYG 248
+YFL G G
Sbjct: 267 TEAFKYFLQGMG 278
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 18/252 (7%)
Query: 2 SCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHF 61
SCFQ LF E ++ NF H++ PG E GA S+D LAD I VL +
Sbjct: 40 SCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYL 98
Query: 62 GLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYG 121
++ +GV AGAYIL +A+ + V GL+L++ A W +W +K+ G
Sbjct: 99 NFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------G 151
Query: 122 MCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDI 179
+ + E++L FS+ E+ GN S+++Q R ++ + N+ + + N R D+
Sbjct: 152 LTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDL 206
Query: 180 S---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAM 236
+ G L+C ++ VG+ +P V SK+D ++ +++ G QP +
Sbjct: 207 NFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKL 266
Query: 237 LIPMEYFLMGYG 248
+YFL G G
Sbjct: 267 TEAFKYFLQGMG 278
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 18/250 (7%)
Query: 2 SCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHF 61
SCFQ LF + ++ NF H++ PG E GA S+D LAD I +L +
Sbjct: 50 SCFQPLFRFGDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL 108
Query: 62 GLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYG 121
++ +GV AGAYIL+ +A+ + V GL+L++ A W +W +K+ G
Sbjct: 109 NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------G 161
Query: 122 MCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDI 179
+ + +++L FS+ E+ GN S+++Q R ++ + N+ + + N R D+
Sbjct: 162 LTSSIPDMILGHLFSQEELSGN-----SELIQKYRGIIQHAPNLENIELYWNSYNNRRDL 216
Query: 180 S---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAM 236
+ G L+C ++ VG+ +P V SK+D ++ +++ G QP +
Sbjct: 217 NFERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKL 276
Query: 237 LIPMEYFLMG 246
+YFL G
Sbjct: 277 TEAFKYFLQG 286
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
pdb|2A2J|B Chain B, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
Length = 246
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 21 FCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHF 61
F + + P G + GA A PV S L +Q+AEV F
Sbjct: 156 FTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRF 196
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 46 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 98
S+D AD A +L+ G+ +G A +L F KY RV+ + P+
Sbjct: 81 SLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 102
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 102
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 102
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 102
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 102
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 2 SCFQGLFFCPEACS---LLLH-------NFCIYHINPPGHEFGAAAISDDEPVL-SVDDL 50
SCF+ PEACS +++H YH + GH FGA A DE L S +L
Sbjct: 72 SCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGEL 131
Query: 51 ADQIAEVLNHFGLGAVMCMGVTAGA 75
Q V + G + V G+
Sbjct: 132 ELQFRRVKCKYPEGTKVTFHVEKGS 156
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 46 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 98
S LA +L G+ +G + G + T +A+ Y +V L+LV+P+
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 61 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 102
FG V MG G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 30 GHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRV 89
GHE A I+ D + D+ Q N +G GA G GA + A R RV
Sbjct: 509 GHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERV 568
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,776,585
Number of Sequences: 62578
Number of extensions: 344079
Number of successful extensions: 894
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)